molstar 2.4.0 → 2.4.1

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "molstar",
-  "version": "2.4.0",
+  "version": "2.4.1",
   "description": "A comprehensive macromolecular library.",
   "homepage": "https://github.com/molstar/molstar#readme",
   "repository": {

package/lib/commonjs/mol-repr/structure/visual/util/color.d.ts

@@ -1,24 +0,0 @@
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { MeshValues } from '../../../../mol-gl/renderable/mesh';
-import { TextureMeshValues } from '../../../../mol-gl/renderable/texture-mesh';
-import { WebGLContext } from '../../../../mol-gl/webgl/context';
-import { Texture } from '../../../../mol-gl/webgl/texture';
-import { Theme } from '../../../../mol-theme/theme';
-import { ParamDefinition as PD } from '../../../../mol-util/param-definition';
-export declare const ColorSmoothingParams: {
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
-        resolutionFactor: number;
-        sampleStride: number;
-    }>, "on">>;
-};
-export declare type ColorSmoothingParams = typeof ColorSmoothingParams;
-export declare function getColorSmoothingProps(props: PD.Values<ColorSmoothingParams>, theme: Theme, resolution?: number): {
-    resolution: number;
-    stride: number;
-} | undefined;
-export declare function applyMeshColorSmoothing(values: MeshValues, resolution: number, stride: number, webgl?: WebGLContext, colorTexture?: Texture): void;
-export declare function applyTextureMeshColorSmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;

package/lib/commonjs/mol-repr/structure/visual/util/color.js

@@ -1,100 +0,0 @@
-"use strict";
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.applyTextureMeshColorSmoothing = exports.applyMeshColorSmoothing = exports.getColorSmoothingProps = exports.ColorSmoothingParams = void 0;
-var color_smoothing_1 = require("../../../../mol-geo/geometry/mesh/color-smoothing");
-var color_smoothing_2 = require("../../../../mol-geo/geometry/texture-mesh/color-smoothing");
-var interpolate_1 = require("../../../../mol-math/interpolate");
-var mol_util_1 = require("../../../../mol-util");
-var param_definition_1 = require("../../../../mol-util/param-definition");
-exports.ColorSmoothingParams = {
-    smoothColors: param_definition_1.ParamDefinition.MappedStatic('auto', {
-        auto: param_definition_1.ParamDefinition.Group({}),
-        on: param_definition_1.ParamDefinition.Group({
-            resolutionFactor: param_definition_1.ParamDefinition.Numeric(2, { min: 0.5, max: 6, step: 0.1 }),
-            sampleStride: param_definition_1.ParamDefinition.Numeric(3, { min: 1, max: 12, step: 1 }),
-        }),
-        off: param_definition_1.ParamDefinition.Group({})
-    }),
-};
-function getColorSmoothingProps(props, theme, resolution) {
-    if ((props.smoothColors.name === 'on' || (props.smoothColors.name === 'auto' && theme.color.preferSmoothing)) && resolution && resolution < 3) {
-        var stride = 3;
-        if (props.smoothColors.name === 'on') {
-            resolution *= props.smoothColors.params.resolutionFactor;
-            stride = props.smoothColors.params.sampleStride;
-        }
-        else {
-            // https://graphtoy.com/?f1(x,t)=(2-smoothstep(0,1.1,x))*x&coords=0.7,0.6,1.8
-            resolution *= 2 - (0, interpolate_1.smoothstep)(0, 1.1, resolution);
-            resolution = Math.max(0.5, resolution);
-            if (resolution > 1.2)
-                stride = 2;
-        }
-        return { resolution: resolution, stride: stride };
-    }
-    ;
-}
-exports.getColorSmoothingProps = getColorSmoothingProps;
-function isSupportedColorType(x) {
-    return x === 'group' || x === 'groupInstance';
-}
-function applyMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
-    if (!isSupportedColorType(values.dColorType.ref.value))
-        return;
-    var smoothingData = (0, color_smoothing_1.calcMeshColorSmoothing)({
-        vertexCount: values.uVertexCount.ref.value,
-        instanceCount: values.uInstanceCount.ref.value,
-        groupCount: values.uGroupCount.ref.value,
-        transformBuffer: values.aTransform.ref.value,
-        instanceBuffer: values.aInstance.ref.value,
-        positionBuffer: values.aPosition.ref.value,
-        groupBuffer: values.aGroup.ref.value,
-        colorData: values.tColor.ref.value,
-        colorType: values.dColorType.ref.value,
-        boundingSphere: values.boundingSphere.ref.value,
-        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
-    }, resolution, stride, webgl, colorTexture);
-    if (smoothingData.kind === 'volume') {
-        mol_util_1.ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-        mol_util_1.ValueCell.update(values.tColorGrid, smoothingData.texture);
-        mol_util_1.ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
-        mol_util_1.ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
-        mol_util_1.ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
-    }
-    else if (smoothingData.kind === 'vertex') {
-        mol_util_1.ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-        mol_util_1.ValueCell.update(values.tColor, smoothingData.texture);
-        mol_util_1.ValueCell.update(values.uColorTexDim, smoothingData.texDim);
-    }
-}
-exports.applyMeshColorSmoothing = applyMeshColorSmoothing;
-function applyTextureMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
-    if (!isSupportedColorType(values.dColorType.ref.value))
-        return;
-    stride *= 3; // triple because TextureMesh is never indexed (no elements buffer)
-    var smoothingData = (0, color_smoothing_2.calcTextureMeshColorSmoothing)({
-        vertexCount: values.uVertexCount.ref.value,
-        instanceCount: values.uInstanceCount.ref.value,
-        groupCount: values.uGroupCount.ref.value,
-        transformBuffer: values.aTransform.ref.value,
-        instanceBuffer: values.aInstance.ref.value,
-        positionTexture: values.tPosition.ref.value,
-        groupTexture: values.tGroup.ref.value,
-        colorData: values.tColor.ref.value,
-        colorType: values.dColorType.ref.value,
-        boundingSphere: values.boundingSphere.ref.value,
-        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
-    }, resolution, stride, webgl, colorTexture);
-    mol_util_1.ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-    mol_util_1.ValueCell.update(values.tColorGrid, smoothingData.texture);
-    mol_util_1.ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
-    mol_util_1.ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
-    mol_util_1.ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
-}
-exports.applyTextureMeshColorSmoothing = applyTextureMeshColorSmoothing;
-//# sourceMappingURL=color.js.map

package/lib/commonjs/mol-repr/structure/visual/util/color.js.map

@@ -1 +0,0 @@
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package/lib/mol-gl/_spec/shader.spec.js

@@ -1,2 +0,0 @@
-"use strict";
-//# sourceMappingURL=shader.spec.js.map

package/lib/mol-gl/_spec/shader.spec.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"shader.spec.js","sourceRoot":"","sources":["../../../src/mol-gl/_spec/shader.spec.ts"],"names":[],"mappings":""}

package/lib/mol-gl/compute/copy.d.ts

@@ -1,20 +0,0 @@
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { WebGLContext } from '../../mol-gl/webgl/context';
-import { Texture } from '../../mol-gl/webgl/texture';
-import { TextureSpec, UniformSpec, Values } from '../../mol-gl/renderable/schema';
-import { ComputeRenderable } from '../../mol-gl/renderable';
-declare const CopySchema: {
-    tColor: TextureSpec<"texture">;
-    uTexSize: UniformSpec<"v2">;
-    drawCount: import("../../mol-gl/renderable/schema").ValueSpec<"number">;
-    instanceCount: import("../../mol-gl/renderable/schema").ValueSpec<"number">;
-    aPosition: import("../../mol-gl/renderable/schema").AttributeSpec<"float32">;
-    uQuadScale: UniformSpec<"v2">;
-};
-export declare type CopyRenderable = ComputeRenderable<Values<typeof CopySchema>>;
-export declare function getCopyRenderable(ctx: WebGLContext, colorTexture: Texture): CopyRenderable;
-export {};

package/lib/mol-gl/compute/copy.js

@@ -1,24 +0,0 @@
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { __assign } from "tslib";
-import { QuadSchema, QuadValues } from '../../mol-gl/compute/util';
-import { TextureSpec, UniformSpec } from '../../mol-gl/renderable/schema';
-import { createComputeRenderable } from '../../mol-gl/renderable';
-import { ShaderCode } from '../../mol-gl/shader-code';
-import { createComputeRenderItem } from '../../mol-gl/webgl/render-item';
-import { ValueCell } from '../../mol-util';
-import { Vec2 } from '../../mol-math/linear-algebra';
-import { quad_vert } from '../../mol-gl/shader/quad.vert';
-import { copy_frag } from '../../mol-gl/shader/copy.frag';
-var CopySchema = __assign(__assign({}, QuadSchema), { tColor: TextureSpec('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: UniformSpec('v2') });
-var CopyShaderCode = ShaderCode('copy', quad_vert, copy_frag);
-export function getCopyRenderable(ctx, colorTexture) {
-    var values = __assign(__assign({}, QuadValues), { tColor: ValueCell.create(colorTexture), uTexSize: ValueCell.create(Vec2.create(colorTexture.getWidth(), colorTexture.getHeight())) });
-    var schema = __assign({}, CopySchema);
-    var renderItem = createComputeRenderItem(ctx, 'triangles', CopyShaderCode, schema, values);
-    return createComputeRenderable(renderItem, values);
-}
-//# sourceMappingURL=copy.js.map

package/lib/mol-gl/compute/copy.js.map

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package/lib/mol-repr/structure/visual/orientation-axes-mesh.d.ts

@@ -1,35 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { ParamDefinition as PD } from '../../../mol-util/param-definition';
-import { UnitsVisual } from '../units-visual';
-import { VisualContext } from '../../visual';
-import { Unit, Structure } from '../../../mol-model/structure';
-import { Theme } from '../../../mol-theme/theme';
-import { Mesh } from '../../../mol-geo/geometry/mesh/mesh';
-export declare const OrientationAxesMeshParams: {
-    sizeFactor: PD.Numeric;
-    axesScale: PD.Numeric;
-    radialSegments: PD.Numeric;
-    detail: PD.Numeric;
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
-    includeParent: PD.BooleanParam;
-    doubleSided: PD.BooleanParam;
-    flipSided: PD.BooleanParam;
-    flatShaded: PD.BooleanParam;
-    ignoreLight: PD.BooleanParam;
-    xrayShaded: PD.BooleanParam;
-    alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-};
-export declare type OrientationAxesMeshParams = typeof OrientationAxesMeshParams;
-export declare function OrientationAxesMeshVisual(materialId: number): UnitsVisual<OrientationAxesMeshParams>;
-export interface OrientationAxesMeshProps {
-    detail: number;
-    radialSegments: number;
-    sizeFactor: number;
-    axesScale: number;
-}
-export declare function createOrientationAxesMesh(ctx: VisualContext, unit: Unit, structure: Structure, theme: Theme, props: OrientationAxesMeshProps, mesh?: Mesh): Mesh;

package/lib/mol-repr/structure/visual/orientation-axes-mesh.js

@@ -1,43 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { __assign } from "tslib";
-import { ParamDefinition as PD } from '../../../mol-util/param-definition';
-import { UnitsMeshParams, UnitsMeshVisual } from '../units-visual';
-import { Mesh } from '../../../mol-geo/geometry/mesh/mesh';
-import { MeshBuilder } from '../../../mol-geo/geometry/mesh/mesh-builder';
-import { addAxes } from '../../../mol-geo/geometry/mesh/builder/axes';
-import { Sphere3D } from '../../../mol-math/geometry';
-import { BaseGeometry } from '../../../mol-geo/geometry/base';
-import { eachUnit, getUnitLoci, isUnitApplicable, UnitIterator } from './util/orientation';
-export var OrientationAxesMeshParams = __assign(__assign({}, UnitsMeshParams), { sizeFactor: PD.Numeric(1, { min: 0, max: 2, step: 0.1 }), axesScale: PD.Numeric(1, { min: 0, max: 20, step: 0.1 }), radialSegments: PD.Numeric(16, { min: 2, max: 56, step: 2 }, BaseGeometry.CustomQualityParamInfo), detail: PD.Numeric(0, { min: 0, max: 3, step: 1 }, BaseGeometry.CustomQualityParamInfo) });
-export function OrientationAxesMeshVisual(materialId) {
-    return UnitsMeshVisual({
-        defaultProps: PD.getDefaultValues(OrientationAxesMeshParams),
-        createGeometry: createOrientationAxesMesh,
-        createLocationIterator: UnitIterator,
-        getLoci: getUnitLoci,
-        eachLocation: eachUnit,
-        setUpdateState: function (state, newProps, currentProps) {
-            state.createGeometry = (newProps.sizeFactor !== currentProps.sizeFactor ||
-                newProps.detail !== currentProps.detail);
-        }
-    }, materialId);
-}
-export function createOrientationAxesMesh(ctx, unit, structure, theme, props, mesh) {
-    if (!isUnitApplicable(unit))
-        return Mesh.createEmpty(mesh);
-    var detail = props.detail, sizeFactor = props.sizeFactor, radialSegments = props.radialSegments, axesScale = props.axesScale;
-    var vertexCount = 256;
-    var builderState = MeshBuilder.createState(vertexCount, vertexCount / 2, mesh);
-    var axes = unit.principalAxes.momentsAxes;
-    builderState.currentGroup = 0;
-    addAxes(builderState, axes, axesScale, detail, radialSegments);
-    var m = MeshBuilder.getMesh(builderState);
-    var sphere = Sphere3D.expand(Sphere3D(), unit.boundary.sphere, 1 * props.sizeFactor);
-    m.setBoundingSphere(sphere);
-    return m;
-}
-//# sourceMappingURL=orientation-axes-mesh.js.map

package/lib/mol-repr/structure/visual/orientation-axes-mesh.js.map

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package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.d.ts

@@ -1,31 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { ParamDefinition as PD } from '../../../mol-util/param-definition';
-import { UnitsVisual } from '../../../mol-repr/structure/units-visual';
-import { VisualContext } from '../../../mol-repr/visual';
-import { Unit, Structure } from '../../../mol-model/structure';
-import { Theme } from '../../../mol-theme/theme';
-import { Mesh } from '../../../mol-geo/geometry/mesh/mesh';
-export declare const OrientationEllipsoidMeshParams: {
-    sizeFactor: PD.Numeric;
-    detail: PD.Numeric;
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
-    includeParent: PD.BooleanParam;
-    doubleSided: PD.BooleanParam;
-    flipSided: PD.BooleanParam;
-    flatShaded: PD.BooleanParam;
-    ignoreLight: PD.BooleanParam;
-    xrayShaded: PD.BooleanParam;
-    alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-};
-export declare type OrientationEllipsoidMeshParams = typeof OrientationEllipsoidMeshParams;
-export declare function OrientationEllipsoidMeshVisual(materialId: number): UnitsVisual<OrientationEllipsoidMeshParams>;
-export interface OrientationEllipsoidMeshProps {
-    detail: number;
-    sizeFactor: number;
-}
-export declare function createOrientationEllipsoidMesh(ctx: VisualContext, unit: Unit, structure: Structure, theme: Theme, props: OrientationEllipsoidMeshProps, mesh?: Mesh): Mesh;

package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js

@@ -1,48 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { __assign } from "tslib";
-import { ParamDefinition as PD } from '../../../mol-util/param-definition';
-import { UnitsMeshParams, UnitsMeshVisual } from '../../../mol-repr/structure/units-visual';
-import { Mesh } from '../../../mol-geo/geometry/mesh/mesh';
-import { MeshBuilder } from '../../../mol-geo/geometry/mesh/mesh-builder';
-import { Vec3 } from '../../../mol-math/linear-algebra';
-import { addEllipsoid } from '../../../mol-geo/geometry/mesh/builder/ellipsoid';
-import { Axes3D, Sphere3D } from '../../../mol-math/geometry';
-import { BaseGeometry } from '../../../mol-geo/geometry/base';
-import { eachUnit, getUnitLoci, isUnitApplicable, UnitIterator } from './util/orientation';
-export var OrientationEllipsoidMeshParams = __assign(__assign({}, UnitsMeshParams), { sizeFactor: PD.Numeric(1, { min: 0, max: 2, step: 0.1 }), detail: PD.Numeric(0, { min: 0, max: 3, step: 1 }, BaseGeometry.CustomQualityParamInfo) });
-export function OrientationEllipsoidMeshVisual(materialId) {
-    return UnitsMeshVisual({
-        defaultProps: PD.getDefaultValues(OrientationEllipsoidMeshParams),
-        createGeometry: createOrientationEllipsoidMesh,
-        createLocationIterator: UnitIterator,
-        getLoci: getUnitLoci,
-        eachLocation: eachUnit,
-        setUpdateState: function (state, newProps, currentProps) {
-            state.createGeometry = (newProps.sizeFactor !== currentProps.sizeFactor ||
-                newProps.detail !== currentProps.detail);
-        }
-    }, materialId);
-}
-export function createOrientationEllipsoidMesh(ctx, unit, structure, theme, props, mesh) {
-    if (!isUnitApplicable(unit))
-        return Mesh.createEmpty(mesh);
-    var detail = props.detail, sizeFactor = props.sizeFactor;
-    var vertexCount = 256;
-    var builderState = MeshBuilder.createState(vertexCount, vertexCount / 2, mesh);
-    var axes = unit.principalAxes.boxAxes;
-    var origin = axes.origin, dirA = axes.dirA, dirB = axes.dirB;
-    var size = Axes3D.size(Vec3(), axes);
-    Vec3.scale(size, size, sizeFactor / 2);
-    var radiusScale = Vec3.create(size[2], size[1], size[0]);
-    builderState.currentGroup = 0;
-    addEllipsoid(builderState, origin, dirA, dirB, radiusScale, detail + 1);
-    var m = MeshBuilder.getMesh(builderState);
-    var sphere = Sphere3D.expand(Sphere3D(), unit.boundary.sphere, 1 * props.sizeFactor);
-    m.setBoundingSphere(sphere);
-    return m;
-}
-//# sourceMappingURL=orientation-ellipsoid-mesh%20copy.js.map

package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js.map

@@ -1 +0,0 @@
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package/lib/mol-repr/structure/visual/util/color.d.ts

@@ -1,24 +0,0 @@
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { MeshValues } from '../../../../mol-gl/renderable/mesh';
-import { TextureMeshValues } from '../../../../mol-gl/renderable/texture-mesh';
-import { WebGLContext } from '../../../../mol-gl/webgl/context';
-import { Texture } from '../../../../mol-gl/webgl/texture';
-import { Theme } from '../../../../mol-theme/theme';
-import { ParamDefinition as PD } from '../../../../mol-util/param-definition';
-export declare const ColorSmoothingParams: {
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
-        resolutionFactor: number;
-        sampleStride: number;
-    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "auto">>;
-};
-export declare type ColorSmoothingParams = typeof ColorSmoothingParams;
-export declare function getColorSmoothingProps(props: PD.Values<ColorSmoothingParams>, theme: Theme, resolution?: number): {
-    resolution: number;
-    stride: number;
-} | undefined;
-export declare function applyMeshColorSmoothing(values: MeshValues, resolution: number, stride: number, webgl?: WebGLContext, colorTexture?: Texture): void;
-export declare function applyTextureMeshColorSmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;

package/lib/mol-repr/structure/visual/util/color.js

@@ -1,94 +0,0 @@
-/**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { calcMeshColorSmoothing } from '../../../../mol-geo/geometry/mesh/color-smoothing';
-import { calcTextureMeshColorSmoothing } from '../../../../mol-geo/geometry/texture-mesh/color-smoothing';
-import { smoothstep } from '../../../../mol-math/interpolate';
-import { ValueCell } from '../../../../mol-util';
-import { ParamDefinition as PD } from '../../../../mol-util/param-definition';
-export var ColorSmoothingParams = {
-    smoothColors: PD.MappedStatic('auto', {
-        auto: PD.Group({}),
-        on: PD.Group({
-            resolutionFactor: PD.Numeric(2, { min: 0.5, max: 6, step: 0.1 }),
-            sampleStride: PD.Numeric(3, { min: 1, max: 12, step: 1 }),
-        }),
-        off: PD.Group({})
-    }),
-};
-export function getColorSmoothingProps(props, theme, resolution) {
-    if ((props.smoothColors.name === 'on' || (props.smoothColors.name === 'auto' && theme.color.preferSmoothing)) && resolution && resolution < 3) {
-        var stride = 3;
-        if (props.smoothColors.name === 'on') {
-            resolution *= props.smoothColors.params.resolutionFactor;
-            stride = props.smoothColors.params.sampleStride;
-        }
-        else {
-            // https://graphtoy.com/?f1(x,t)=(2-smoothstep(0,1.1,x))*x&coords=0.7,0.6,1.8
-            resolution *= 2 - smoothstep(0, 1.1, resolution);
-            resolution = Math.max(0.5, resolution);
-            if (resolution > 1.2)
-                stride = 2;
-        }
-        return { resolution: resolution, stride: stride };
-    }
-    ;
-}
-function isSupportedColorType(x) {
-    return x === 'group' || x === 'groupInstance';
-}
-export function applyMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
-    if (!isSupportedColorType(values.dColorType.ref.value))
-        return;
-    var smoothingData = calcMeshColorSmoothing({
-        vertexCount: values.uVertexCount.ref.value,
-        instanceCount: values.uInstanceCount.ref.value,
-        groupCount: values.uGroupCount.ref.value,
-        transformBuffer: values.aTransform.ref.value,
-        instanceBuffer: values.aInstance.ref.value,
-        positionBuffer: values.aPosition.ref.value,
-        groupBuffer: values.aGroup.ref.value,
-        colorData: values.tColor.ref.value,
-        colorType: values.dColorType.ref.value,
-        boundingSphere: values.boundingSphere.ref.value,
-        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
-    }, resolution, stride, webgl, colorTexture);
-    if (smoothingData.kind === 'volume') {
-        ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-        ValueCell.update(values.tColorGrid, smoothingData.texture);
-        ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
-        ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
-        ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
-    }
-    else if (smoothingData.kind === 'vertex') {
-        ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-        ValueCell.update(values.tColor, smoothingData.texture);
-        ValueCell.update(values.uColorTexDim, smoothingData.texDim);
-    }
-}
-export function applyTextureMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
-    if (!isSupportedColorType(values.dColorType.ref.value))
-        return;
-    stride *= 3; // triple because TextureMesh is never indexed (no elements buffer)
-    var smoothingData = calcTextureMeshColorSmoothing({
-        vertexCount: values.uVertexCount.ref.value,
-        instanceCount: values.uInstanceCount.ref.value,
-        groupCount: values.uGroupCount.ref.value,
-        transformBuffer: values.aTransform.ref.value,
-        instanceBuffer: values.aInstance.ref.value,
-        positionTexture: values.tPosition.ref.value,
-        groupTexture: values.tGroup.ref.value,
-        colorData: values.tColor.ref.value,
-        colorType: values.dColorType.ref.value,
-        boundingSphere: values.boundingSphere.ref.value,
-        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
-    }, resolution, stride, webgl, colorTexture);
-    ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
-    ValueCell.update(values.tColorGrid, smoothingData.texture);
-    ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
-    ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
-    ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
-}
-//# sourceMappingURL=color.js.map

package/lib/mol-repr/structure/visual/util/color.js.map

@@ -1 +0,0 @@
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package/lib/mol-repr/structure/visual/util/orientation.d.ts

@@ -1,17 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { Unit, StructureElement } from '../../../../mol-model/structure';
-import { PickingId } from '../../../../mol-geo/geometry/picking';
-import { Interval } from '../../../../mol-data/int';
-import { Loci } from '../../../../mol-model/loci';
-import { LocationIterator } from '../../../../mol-geo/util/location-iterator';
-import { StructureGroup } from './common';
-export declare function isUnitApplicable(unit: Unit): boolean;
-export declare function UnitIterator(structureGroup: StructureGroup): LocationIterator;
-export declare function getUnitLoci(pickingId: PickingId, structureGroup: StructureGroup, id: number): StructureElement.Loci | {
-    kind: "empty-loci";
-};
-export declare function eachUnit(loci: Loci, structureGroup: StructureGroup, apply: (interval: Interval) => boolean): boolean;

package/lib/mol-repr/structure/visual/util/orientation.js

@@ -1,71 +0,0 @@
-/**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
- *
- * @author Alexander Rose <alexander.rose@weirdbyte.de>
- */
-import { Unit, Structure, StructureElement } from '../../../../mol-model/structure';
-import { OrderedSet, Interval } from '../../../../mol-data/int';
-import { EmptyLoci } from '../../../../mol-model/loci';
-import { LocationIterator } from '../../../../mol-geo/util/location-iterator';
-export function isUnitApplicable(unit) {
-    if (Unit.Traits.is(unit.traits, 1 /* MultiChain */))
-        return false;
-    if (Unit.Traits.is(unit.traits, 2 /* Partitioned */))
-        return false;
-    if (Unit.isCoarse(unit))
-        return true;
-    if (unit.elements.length === 0)
-        return false;
-    unit.model.atomicHierarchy.derived.residue.moleculeType;
-    var rI = unit.residueIndex[unit.elements[0]];
-    var mt = unit.model.atomicHierarchy.derived.residue.moleculeType[rI];
-    if (mt === 3 /* Ion */)
-        return false;
-    if (mt === 2 /* Water */)
-        return false;
-    return true;
-}
-export function UnitIterator(structureGroup) {
-    var group = structureGroup.group, structure = structureGroup.structure;
-    var groupCount = 1;
-    var instanceCount = group.units.length;
-    var location = StructureElement.Location.create(structure);
-    var getLocation = function (groupIndex, instanceIndex) {
-        var unit = group.units[instanceIndex];
-        location.unit = unit;
-        location.element = unit.elements[groupIndex];
-        return location;
-    };
-    return LocationIterator(groupCount, instanceCount, 1, getLocation);
-}
-export function getUnitLoci(pickingId, structureGroup, id) {
-    var objectId = pickingId.objectId, instanceId = pickingId.instanceId;
-    if (id === objectId) {
-        var structure = structureGroup.structure, group = structureGroup.group;
-        var unit = group.units[instanceId];
-        var indices = OrderedSet.ofBounds(0, unit.elements.length);
-        return StructureElement.Loci(structure, [{ unit: unit, indices: indices }]);
-    }
-    return EmptyLoci;
-}
-export function eachUnit(loci, structureGroup, apply) {
-    var changed = false;
-    if (!StructureElement.Loci.is(loci))
-        return false;
-    var structure = structureGroup.structure, group = structureGroup.group;
-    if (!Structure.areEquivalent(loci.structure, structure))
-        return false;
-    var elementCount = group.elements.length;
-    for (var _i = 0, _a = loci.elements; _i < _a.length; _i++) {
-        var e = _a[_i];
-        var unitIdx = group.unitIndexMap.get(e.unit.id);
-        if (unitIdx !== undefined) {
-            if (OrderedSet.size(e.indices) === elementCount) {
-                if (apply(Interval.ofSingleton(unitIdx)))
-                    changed = true;
-            }
-        }
-    }
-    return changed;
-}
-//# sourceMappingURL=orientation.js.map

package/lib/mol-repr/structure/visual/util/orientation.js.map

@@ -1 +0,0 @@
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