molstar 2.4.0 → 2.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (305) hide show
  1. package/build/viewer/molstar.js +1 -1
  2. package/lib/apps/docking-viewer/viewport.d.ts +2 -2
  3. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  4. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
  5. package/lib/commonjs/apps/viewer/index.d.ts +2 -2
  6. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  7. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +1 -1
  8. package/lib/commonjs/extensions/anvil/behavior.d.ts +2 -2
  9. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
  10. package/lib/commonjs/extensions/cellpack/representation.d.ts +2 -2
  11. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
  12. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +6 -6
  13. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -6
  14. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  15. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
  16. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +10 -10
  17. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +4 -4
  18. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -1
  19. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  20. package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -3
  21. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  22. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
  23. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +3 -3
  24. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -1
  25. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +18 -8
  26. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  27. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  28. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -3
  29. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
  30. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
  31. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  32. package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
  33. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  34. package/lib/commonjs/mol-io/common/typed-array.d.ts +1 -1
  35. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  36. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +3 -3
  37. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  38. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +14 -14
  39. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  40. package/lib/commonjs/mol-model/loci.d.ts +20 -20
  41. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  42. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +54 -5
  43. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
  44. package/lib/commonjs/mol-model/structure/structure/unit.d.ts +2 -2
  45. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +6 -6
  46. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +5 -5
  47. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
  48. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.d.ts +1 -1
  49. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +1 -7
  50. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js.map +1 -1
  51. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +2 -2
  52. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +2 -2
  53. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +6 -6
  54. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +8 -8
  55. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  56. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  57. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -1
  58. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +4 -4
  59. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +2 -2
  60. package/lib/commonjs/mol-plugin/commands.d.ts +2 -2
  61. package/lib/commonjs/mol-plugin/config.d.ts +1 -1
  62. package/lib/commonjs/mol-plugin/layout.d.ts +4 -4
  63. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -3
  64. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +2 -2
  65. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  66. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -5
  67. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +5 -5
  68. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +15 -15
  69. package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -1
  70. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +10 -10
  71. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +5 -5
  72. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  73. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +1 -1
  74. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +3 -3
  75. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
  76. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +7 -7
  77. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +10 -10
  78. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +2 -2
  79. package/lib/commonjs/mol-plugin-ui/sequence/polymer.d.ts +1 -1
  80. package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +1 -1
  81. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -1
  82. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +1 -1
  83. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -1
  84. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +1 -1
  85. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +1 -1
  86. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +2 -2
  87. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -1
  88. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +2 -2
  89. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +12 -12
  90. package/lib/commonjs/mol-repr/structure/params.d.ts +11 -11
  91. package/lib/commonjs/mol-repr/structure/registry.d.ts +41 -41
  92. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +6 -6
  93. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +15 -15
  94. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +6 -6
  95. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +9 -9
  96. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +15 -15
  97. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  98. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +6 -6
  99. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +9 -9
  100. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +18 -18
  101. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  102. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +6 -6
  103. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +9 -9
  104. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +6 -6
  105. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +6 -6
  106. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +17 -17
  107. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +10 -10
  108. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +5 -5
  109. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +10 -10
  110. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +5 -5
  111. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +2 -2
  112. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +2 -2
  113. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +2 -2
  114. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +2 -2
  115. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +3 -3
  116. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +4 -4
  117. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +2 -2
  118. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +4 -4
  119. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  120. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +2 -2
  121. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +3 -3
  122. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  123. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +2 -2
  124. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +2 -2
  125. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +2 -2
  126. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +2 -2
  127. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +4 -4
  128. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +4 -4
  129. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +2 -2
  130. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +2 -2
  131. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +5 -5
  132. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +2 -2
  133. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +18 -18
  134. package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +2 -2
  135. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +8 -8
  136. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +12 -12
  137. package/lib/commonjs/mol-repr/volume/registry.d.ts +8 -8
  138. package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -1
  139. package/lib/commonjs/mol-repr/volume/slice.d.ts +12 -12
  140. package/lib/commonjs/mol-theme/color/element-symbol.d.ts +4 -4
  141. package/lib/commonjs/mol-theme/color.d.ts +2 -2
  142. package/lib/commonjs/mol-util/color/lists.d.ts +3 -3
  143. package/lib/commonjs/mol-util/color/names.d.ts +1 -1
  144. package/lib/commonjs/mol-util/color/palette.d.ts +1 -1
  145. package/lib/commonjs/mol-util/color/scale.d.ts +1 -1
  146. package/lib/commonjs/servers/model/config.d.ts +2 -2
  147. package/lib/extensions/anvil/behavior.d.ts +2 -2
  148. package/lib/extensions/anvil/representation.d.ts +5 -5
  149. package/lib/extensions/cellpack/representation.d.ts +2 -2
  150. package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
  151. package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +6 -6
  152. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -6
  153. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  154. package/lib/extensions/rcsb/validation-report/behavior.d.ts +3 -3
  155. package/lib/extensions/rcsb/validation-report/representation.d.ts +10 -10
  156. package/lib/mol-canvas3d/canvas3d.d.ts +4 -4
  157. package/lib/mol-canvas3d/helper/camera-helper.d.ts +1 -1
  158. package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  159. package/lib/mol-data/int/impl/ordered-set.d.ts +3 -3
  160. package/lib/mol-geo/geometry/base.d.ts +3 -3
  161. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  162. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
  163. package/lib/mol-geo/geometry/image/image.d.ts +3 -3
  164. package/lib/mol-geo/geometry/lines/lines.d.ts +1 -1
  165. package/lib/mol-geo/geometry/mesh/builder/tube.js +19 -9
  166. package/lib/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  167. package/lib/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  168. package/lib/mol-geo/geometry/points/points.d.ts +3 -3
  169. package/lib/mol-geo/geometry/spheres/spheres.d.ts +1 -1
  170. package/lib/mol-geo/geometry/text/text.d.ts +1 -1
  171. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  172. package/lib/mol-gl/renderer.d.ts +2 -2
  173. package/lib/mol-io/common/typed-array.d.ts +1 -1
  174. package/lib/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  175. package/lib/mol-io/reader/cif/schema/density-server.d.ts +3 -3
  176. package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  177. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +14 -14
  178. package/lib/mol-io/reader/ply/schema.d.ts +1 -1
  179. package/lib/mol-model/loci.d.ts +20 -20
  180. package/lib/mol-model/shape/shape.d.ts +1 -1
  181. package/lib/mol-model/structure/structure/properties.d.ts +2 -2
  182. package/lib/mol-model/structure/structure/unit.d.ts +2 -2
  183. package/lib/mol-model-formats/shape/ply.d.ts +6 -6
  184. package/lib/mol-model-formats/structure/basic/schema.d.ts +5 -5
  185. package/lib/mol-model-formats/structure/common/component.d.ts +8 -8
  186. package/lib/mol-model-props/computed/interactions/hydrogen-bonds.d.ts +1 -1
  187. package/lib/mol-model-props/computed/interactions/hydrogen-bonds.js +1 -7
  188. package/lib/mol-model-props/computed/interactions/hydrogen-bonds.js.map +1 -1
  189. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +2 -2
  190. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +2 -2
  191. package/lib/mol-model-props/computed/representations/interactions.d.ts +6 -6
  192. package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +8 -8
  193. package/lib/mol-plugin/behavior/behavior.d.ts +1 -1
  194. package/lib/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  195. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -1
  196. package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +4 -4
  197. package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +2 -2
  198. package/lib/mol-plugin/commands.d.ts +2 -2
  199. package/lib/mol-plugin/layout.d.ts +4 -4
  200. package/lib/mol-plugin/util/viewport-screenshot.d.ts +3 -3
  201. package/lib/mol-plugin/version.js +2 -2
  202. package/lib/mol-plugin-state/actions/structure.d.ts +1 -1
  203. package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  204. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -5
  205. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +5 -5
  206. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +15 -15
  207. package/lib/mol-plugin-state/builder/structure/representation.d.ts +1 -1
  208. package/lib/mol-plugin-state/formats/volume.d.ts +10 -10
  209. package/lib/mol-plugin-state/helpers/root-structure.d.ts +5 -5
  210. package/lib/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  211. package/lib/mol-plugin-state/manager/interactivity.d.ts +1 -1
  212. package/lib/mol-plugin-state/manager/structure/component.d.ts +3 -3
  213. package/lib/mol-plugin-state/transforms/data.d.ts +1 -1
  214. package/lib/mol-plugin-state/transforms/model.d.ts +7 -7
  215. package/lib/mol-plugin-state/transforms/representation.d.ts +10 -10
  216. package/lib/mol-plugin-ui/structure/measurements.d.ts +1 -1
  217. package/lib/mol-plugin-ui/structure/selection.d.ts +1 -1
  218. package/lib/mol-repr/shape/loci/angle.d.ts +1 -1
  219. package/lib/mol-repr/shape/loci/common.d.ts +1 -1
  220. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -1
  221. package/lib/mol-repr/shape/loci/distance.d.ts +1 -1
  222. package/lib/mol-repr/shape/loci/label.d.ts +1 -1
  223. package/lib/mol-repr/shape/loci/orientation.d.ts +2 -2
  224. package/lib/mol-repr/shape/loci/plane.d.ts +1 -1
  225. package/lib/mol-repr/shape/model/unitcell.d.ts +2 -2
  226. package/lib/mol-repr/structure/complex-visual.d.ts +12 -12
  227. package/lib/mol-repr/structure/params.d.ts +11 -11
  228. package/lib/mol-repr/structure/registry.d.ts +41 -41
  229. package/lib/mol-repr/structure/representation/backbone.d.ts +6 -6
  230. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +15 -15
  231. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +6 -6
  232. package/lib/mol-repr/structure/representation/cartoon.d.ts +9 -9
  233. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +15 -15
  234. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  235. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +6 -6
  236. package/lib/mol-repr/structure/representation/label.d.ts +9 -9
  237. package/lib/mol-repr/structure/representation/line.d.ts +18 -18
  238. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  239. package/lib/mol-repr/structure/representation/orientation.d.ts +6 -6
  240. package/lib/mol-repr/structure/representation/point.d.ts +9 -9
  241. package/lib/mol-repr/structure/representation/putty.d.ts +6 -6
  242. package/lib/mol-repr/structure/representation/spacefill.d.ts +6 -6
  243. package/lib/mol-repr/structure/units-visual.d.ts +17 -17
  244. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +10 -10
  245. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +5 -5
  246. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +10 -10
  247. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +5 -5
  248. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +2 -2
  249. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +2 -2
  250. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +2 -2
  251. package/lib/mol-repr/structure/visual/element-cross.d.ts +2 -2
  252. package/lib/mol-repr/structure/visual/element-point.d.ts +3 -3
  253. package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -4
  254. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +2 -2
  255. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +4 -4
  256. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  257. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +2 -2
  258. package/lib/mol-repr/structure/visual/label-text.d.ts +3 -3
  259. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  260. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +2 -2
  261. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +2 -2
  262. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +2 -2
  263. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +2 -2
  264. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +4 -4
  265. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +4 -4
  266. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +2 -2
  267. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +2 -2
  268. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +5 -5
  269. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +2 -2
  270. package/lib/mol-repr/structure/visual/util/bond.d.ts +18 -18
  271. package/lib/mol-repr/structure/visual/util/common.d.ts +2 -2
  272. package/lib/mol-repr/volume/direct-volume.d.ts +8 -8
  273. package/lib/mol-repr/volume/isosurface.d.ts +12 -12
  274. package/lib/mol-repr/volume/registry.d.ts +8 -8
  275. package/lib/mol-repr/volume/representation.d.ts +1 -1
  276. package/lib/mol-repr/volume/slice.d.ts +12 -12
  277. package/lib/mol-theme/color/element-symbol.d.ts +4 -4
  278. package/lib/mol-theme/color.d.ts +2 -2
  279. package/lib/mol-util/color/names.d.ts +1 -1
  280. package/lib/mol-util/color/palette.d.ts +1 -1
  281. package/lib/mol-util/color/scale.d.ts +1 -1
  282. package/lib/servers/model/config.d.ts +2 -2
  283. package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
  284. package/package.json +1 -1
  285. package/lib/commonjs/mol-repr/structure/visual/util/color.d.ts +0 -24
  286. package/lib/commonjs/mol-repr/structure/visual/util/color.js +0 -100
  287. package/lib/commonjs/mol-repr/structure/visual/util/color.js.map +0 -1
  288. package/lib/mol-gl/_spec/shader.spec.d.ts +0 -0
  289. package/lib/mol-gl/_spec/shader.spec.js +0 -2
  290. package/lib/mol-gl/_spec/shader.spec.js.map +0 -1
  291. package/lib/mol-gl/compute/copy.d.ts +0 -20
  292. package/lib/mol-gl/compute/copy.js +0 -24
  293. package/lib/mol-gl/compute/copy.js.map +0 -1
  294. package/lib/mol-repr/structure/visual/orientation-axes-mesh.d.ts +0 -35
  295. package/lib/mol-repr/structure/visual/orientation-axes-mesh.js +0 -43
  296. package/lib/mol-repr/structure/visual/orientation-axes-mesh.js.map +0 -1
  297. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.d.ts +0 -31
  298. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js +0 -48
  299. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js.map +0 -1
  300. package/lib/mol-repr/structure/visual/util/color.d.ts +0 -24
  301. package/lib/mol-repr/structure/visual/util/color.js +0 -94
  302. package/lib/mol-repr/structure/visual/util/color.js.map +0 -1
  303. package/lib/mol-repr/structure/visual/util/orientation.d.ts +0 -17
  304. package/lib/mol-repr/structure/visual/util/orientation.js +0 -71
  305. package/lib/mol-repr/structure/visual/util/orientation.js.map +0 -1
@@ -16,14 +16,14 @@ export declare const MolecularSurfaceMeshParams: {
16
16
  probeRadius: PD.Numeric;
17
17
  resolution: PD.Numeric;
18
18
  probePositions: PD.Numeric;
19
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
19
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
20
20
  doubleSided: PD.BooleanParam;
21
21
  flipSided: PD.BooleanParam;
22
22
  flatShaded: PD.BooleanParam;
23
23
  ignoreLight: PD.BooleanParam;
24
24
  xrayShaded: PD.BooleanParam;
25
25
  alpha: PD.Numeric;
26
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
26
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
27
27
  };
28
28
  export declare type MolecularSurfaceMeshParams = typeof MolecularSurfaceMeshParams;
29
29
  export declare type MolecularSurfaceMeshProps = PD.Values<MolecularSurfaceMeshParams>;
@@ -13,10 +13,10 @@ export declare const MolecularSurfaceWireframeParams: {
13
13
  probeRadius: PD.Numeric;
14
14
  resolution: PD.Numeric;
15
15
  probePositions: PD.Numeric;
16
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
16
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
17
17
  lineSizeAttenuation: PD.BooleanParam;
18
18
  alpha: PD.Numeric;
19
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
19
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
20
20
  };
21
21
  export declare type MolecularSurfaceWireframeParams = typeof MolecularSurfaceWireframeParams;
22
22
  export declare function MolecularSurfaceWireframeVisual(materialId: number): UnitsVisual<MolecularSurfaceWireframeParams>;
@@ -17,7 +17,7 @@ export declare type NucleotideBlockMeshProps = typeof DefaultNucleotideBlockMesh
17
17
  export declare const NucleotideBlockParams: {
18
18
  sizeFactor: PD.Numeric;
19
19
  radialSegments: PD.Numeric;
20
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
20
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
21
21
  includeParent: PD.BooleanParam;
22
22
  doubleSided: PD.BooleanParam;
23
23
  flipSided: PD.BooleanParam;
@@ -25,7 +25,7 @@ export declare const NucleotideBlockParams: {
25
25
  ignoreLight: PD.BooleanParam;
26
26
  xrayShaded: PD.BooleanParam;
27
27
  alpha: PD.Numeric;
28
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
28
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
29
29
  };
30
30
  export declare type NucleotideBlockParams = typeof NucleotideBlockParams;
31
31
  export declare function NucleotideBlockVisual(materialId: number): UnitsVisual<NucleotideBlockParams>;
@@ -20,7 +20,7 @@ export declare const NucleotideRingParams: {
20
20
  sizeFactor: PD.Numeric;
21
21
  radialSegments: PD.Numeric;
22
22
  detail: PD.Numeric;
23
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
23
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
24
24
  includeParent: PD.BooleanParam;
25
25
  doubleSided: PD.BooleanParam;
26
26
  flipSided: PD.BooleanParam;
@@ -28,7 +28,7 @@ export declare const NucleotideRingParams: {
28
28
  ignoreLight: PD.BooleanParam;
29
29
  xrayShaded: PD.BooleanParam;
30
30
  alpha: PD.Numeric;
31
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
31
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
32
32
  };
33
33
  export declare type NucleotideRingParams = typeof NucleotideRingParams;
34
34
  export declare function NucleotideRingVisual(materialId: number): UnitsVisual<NucleotideRingParams>;
@@ -12,7 +12,7 @@ import { Mesh } from '../../../mol-geo/geometry/mesh/mesh';
12
12
  export declare const OrientationEllipsoidMeshParams: {
13
13
  sizeFactor: PD.Numeric;
14
14
  detail: PD.Numeric;
15
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
15
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
16
16
  includeParent: PD.BooleanParam;
17
17
  doubleSided: PD.BooleanParam;
18
18
  flipSided: PD.BooleanParam;
@@ -20,7 +20,7 @@ export declare const OrientationEllipsoidMeshParams: {
20
20
  ignoreLight: PD.BooleanParam;
21
21
  xrayShaded: PD.BooleanParam;
22
22
  alpha: PD.Numeric;
23
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
23
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
24
24
  };
25
25
  export declare type OrientationEllipsoidMeshParams = typeof OrientationEllipsoidMeshParams;
26
26
  export declare function OrientationEllipsoidMeshVisual(materialId: number): UnitsVisual<OrientationEllipsoidMeshParams>;
@@ -11,14 +11,14 @@ export declare const PolymerBackboneCylinderParams: {
11
11
  sizeFactor: PD.Numeric;
12
12
  radialSegments: PD.Numeric;
13
13
  tryUseImpostor: PD.BooleanParam;
14
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
14
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
15
15
  includeParent: PD.BooleanParam;
16
16
  sizeAspectRatio: PD.Numeric;
17
17
  doubleSided: PD.BooleanParam;
18
18
  ignoreLight: PD.BooleanParam;
19
19
  xrayShaded: PD.BooleanParam;
20
20
  alpha: PD.Numeric;
21
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
21
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
22
22
  flipSided: PD.BooleanParam;
23
23
  flatShaded: PD.BooleanParam;
24
24
  };
@@ -27,14 +27,14 @@ export declare function PolymerBackboneCylinderVisual(materialId: number, struct
27
27
  sizeFactor: PD.Numeric;
28
28
  radialSegments: PD.Numeric;
29
29
  tryUseImpostor: PD.BooleanParam;
30
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
30
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
31
31
  includeParent: PD.BooleanParam;
32
32
  sizeAspectRatio: PD.Numeric;
33
33
  doubleSided: PD.BooleanParam;
34
34
  ignoreLight: PD.BooleanParam;
35
35
  xrayShaded: PD.BooleanParam;
36
36
  alpha: PD.Numeric;
37
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
37
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
38
38
  flipSided: PD.BooleanParam;
39
39
  flatShaded: PD.BooleanParam;
40
40
  }>;
@@ -11,13 +11,13 @@ export declare const PolymerBackboneSphereParams: {
11
11
  sizeFactor: PD.Numeric;
12
12
  detail: PD.Numeric;
13
13
  tryUseImpostor: PD.BooleanParam;
14
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
14
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
15
15
  includeParent: PD.BooleanParam;
16
16
  doubleSided: PD.BooleanParam;
17
17
  ignoreLight: PD.BooleanParam;
18
18
  xrayShaded: PD.BooleanParam;
19
19
  alpha: PD.Numeric;
20
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
20
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
21
21
  flipSided: PD.BooleanParam;
22
22
  flatShaded: PD.BooleanParam;
23
23
  };
@@ -26,13 +26,13 @@ export declare function PolymerBackboneSphereVisual(materialId: number, structur
26
26
  sizeFactor: PD.Numeric;
27
27
  detail: PD.Numeric;
28
28
  tryUseImpostor: PD.BooleanParam;
29
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
29
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
30
30
  includeParent: PD.BooleanParam;
31
31
  doubleSided: PD.BooleanParam;
32
32
  ignoreLight: PD.BooleanParam;
33
33
  xrayShaded: PD.BooleanParam;
34
34
  alpha: PD.Numeric;
35
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
35
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
36
36
  flipSided: PD.BooleanParam;
37
37
  flatShaded: PD.BooleanParam;
38
38
  }>;
@@ -14,7 +14,7 @@ export declare const DefaultPolymerDirectionWedgeProps: PD.Values<{
14
14
  export declare type PolymerDirectionWedgeProps = typeof DefaultPolymerDirectionWedgeProps;
15
15
  export declare const PolymerDirectionParams: {
16
16
  sizeFactor: PD.Numeric;
17
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
17
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
18
18
  includeParent: PD.BooleanParam;
19
19
  doubleSided: PD.BooleanParam;
20
20
  flipSided: PD.BooleanParam;
@@ -22,7 +22,7 @@ export declare const PolymerDirectionParams: {
22
22
  ignoreLight: PD.BooleanParam;
23
23
  xrayShaded: PD.BooleanParam;
24
24
  alpha: PD.Numeric;
25
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
25
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
26
26
  };
27
27
  export declare type PolymerDirectionParams = typeof PolymerDirectionParams;
28
28
  export declare function PolymerDirectionVisual(materialId: number): UnitsVisual<PolymerDirectionParams>;
@@ -17,7 +17,7 @@ export declare type PolymerGapCylinderProps = typeof DefaultPolymerGapCylinderPr
17
17
  export declare const PolymerGapParams: {
18
18
  sizeFactor: PD.Numeric;
19
19
  radialSegments: PD.Numeric;
20
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
20
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
21
21
  includeParent: PD.BooleanParam;
22
22
  doubleSided: PD.BooleanParam;
23
23
  flipSided: PD.BooleanParam;
@@ -25,7 +25,7 @@ export declare const PolymerGapParams: {
25
25
  ignoreLight: PD.BooleanParam;
26
26
  xrayShaded: PD.BooleanParam;
27
27
  alpha: PD.Numeric;
28
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
28
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
29
29
  };
30
30
  export declare type PolymerGapParams = typeof PolymerGapParams;
31
31
  export declare function PolymerGapVisual(materialId: number): UnitsVisual<PolymerGapParams>;
@@ -10,7 +10,7 @@ export declare const PolymerTraceMeshParams: {
10
10
  aspectRatio: PD.Numeric;
11
11
  arrowFactor: PD.Numeric;
12
12
  tubularHelices: PD.BooleanParam;
13
- helixProfile: PD.Select<"elliptical" | "rounded" | "square">;
13
+ helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
14
14
  detail: PD.Numeric;
15
15
  linearSegments: PD.Numeric;
16
16
  radialSegments: PD.Numeric;
@@ -20,7 +20,7 @@ export declare const DefaultPolymerTraceMeshProps: PD.Values<{
20
20
  aspectRatio: PD.Numeric;
21
21
  arrowFactor: PD.Numeric;
22
22
  tubularHelices: PD.BooleanParam;
23
- helixProfile: PD.Select<"elliptical" | "rounded" | "square">;
23
+ helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
24
24
  detail: PD.Numeric;
25
25
  linearSegments: PD.Numeric;
26
26
  radialSegments: PD.Numeric;
@@ -31,11 +31,11 @@ export declare const PolymerTraceParams: {
31
31
  aspectRatio: PD.Numeric;
32
32
  arrowFactor: PD.Numeric;
33
33
  tubularHelices: PD.BooleanParam;
34
- helixProfile: PD.Select<"elliptical" | "rounded" | "square">;
34
+ helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
35
35
  detail: PD.Numeric;
36
36
  linearSegments: PD.Numeric;
37
37
  radialSegments: PD.Numeric;
38
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
38
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
39
39
  includeParent: PD.BooleanParam;
40
40
  doubleSided: PD.BooleanParam;
41
41
  flipSided: PD.BooleanParam;
@@ -43,7 +43,7 @@ export declare const PolymerTraceParams: {
43
43
  ignoreLight: PD.BooleanParam;
44
44
  xrayShaded: PD.BooleanParam;
45
45
  alpha: PD.Numeric;
46
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
46
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
47
47
  };
48
48
  export declare type PolymerTraceParams = typeof PolymerTraceParams;
49
49
  export declare function PolymerTraceVisual(materialId: number): UnitsVisual<PolymerTraceParams>;
@@ -23,7 +23,7 @@ export declare const PolymerTubeParams: {
23
23
  detail: PD.Numeric;
24
24
  linearSegments: PD.Numeric;
25
25
  radialSegments: PD.Numeric;
26
- unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
26
+ unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
27
27
  includeParent: PD.BooleanParam;
28
28
  doubleSided: PD.BooleanParam;
29
29
  flipSided: PD.BooleanParam;
@@ -31,7 +31,7 @@ export declare const PolymerTubeParams: {
31
31
  ignoreLight: PD.BooleanParam;
32
32
  xrayShaded: PD.BooleanParam;
33
33
  alpha: PD.Numeric;
34
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
34
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
35
35
  };
36
36
  export declare type PolymerTubeParams = typeof PolymerTubeParams;
37
37
  export declare function PolymerTubeVisual(materialId: number): UnitsVisual<PolymerTubeParams>;
@@ -12,27 +12,27 @@ import { Loci } from '../../../../mol-model/loci';
12
12
  import { Interval } from '../../../../mol-data/int';
13
13
  import { StructureGroup } from './common';
14
14
  export declare const BondParams: {
15
- includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
16
- excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
15
+ includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
16
+ excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
17
17
  ignoreHydrogens: PD.BooleanParam;
18
18
  aromaticBonds: PD.BooleanParam;
19
- multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
19
+ multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
20
20
  };
21
21
  export declare const DefaultBondProps: PD.Values<{
22
- includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
23
- excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
22
+ includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
23
+ excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
24
24
  ignoreHydrogens: PD.BooleanParam;
25
25
  aromaticBonds: PD.BooleanParam;
26
- multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
26
+ multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
27
27
  }>;
28
28
  export declare type BondProps = typeof DefaultBondProps;
29
29
  export declare const BondCylinderParams: {
30
30
  adjustCylinderLength: PD.BooleanParam;
31
- includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
32
- excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
31
+ includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
32
+ excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
33
33
  ignoreHydrogens: PD.BooleanParam;
34
34
  aromaticBonds: PD.BooleanParam;
35
- multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
35
+ multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
36
36
  linkScale: PD.Numeric;
37
37
  linkSpacing: PD.Numeric;
38
38
  linkCap: PD.BooleanParam;
@@ -47,11 +47,11 @@ export declare const BondCylinderParams: {
47
47
  };
48
48
  export declare const DefaultBondCylinderProps: PD.Values<{
49
49
  adjustCylinderLength: PD.BooleanParam;
50
- includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
51
- excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
50
+ includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
51
+ excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
52
52
  ignoreHydrogens: PD.BooleanParam;
53
53
  aromaticBonds: PD.BooleanParam;
54
- multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
54
+ multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
55
55
  linkScale: PD.Numeric;
56
56
  linkSpacing: PD.Numeric;
57
57
  linkCap: PD.BooleanParam;
@@ -66,22 +66,22 @@ export declare const DefaultBondCylinderProps: PD.Values<{
66
66
  }>;
67
67
  export declare type BondCylinderProps = typeof DefaultBondCylinderProps;
68
68
  export declare const BondLineParams: {
69
- includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
70
- excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
69
+ includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
70
+ excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
71
71
  ignoreHydrogens: PD.BooleanParam;
72
72
  aromaticBonds: PD.BooleanParam;
73
- multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
73
+ multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
74
74
  linkScale: PD.Numeric;
75
75
  linkSpacing: PD.Numeric;
76
76
  aromaticDashCount: PD.Numeric;
77
77
  dashCount: PD.Numeric;
78
78
  };
79
79
  export declare const DefaultBondLineProps: PD.Values<{
80
- includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
81
- excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
80
+ includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
81
+ excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
82
82
  ignoreHydrogens: PD.BooleanParam;
83
83
  aromaticBonds: PD.BooleanParam;
84
- multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
84
+ multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
85
85
  linkScale: PD.Numeric;
86
86
  linkSpacing: PD.Numeric;
87
87
  aromaticDashCount: PD.Numeric;
@@ -29,7 +29,7 @@ export declare const UnitKindInfo: {
29
29
  gaussians: {};
30
30
  };
31
31
  export declare type UnitKind = keyof typeof UnitKindInfo;
32
- export declare const UnitKindOptions: ["atomic" | "spheres" | "gaussians", string][];
32
+ export declare const UnitKindOptions: ["spheres" | "gaussians" | "atomic", string][];
33
33
  export declare function includesUnitKind(unitKinds: UnitKind[], unit: Unit): boolean;
34
34
  export declare function getVolumeSliceInfo(box: Box3D, resolution: number, maxCells?: number): {
35
35
  area: number;
@@ -48,7 +48,7 @@ export declare function ensureReasonableResolution<T>(box: Box3D, props: {
48
48
  } & T & {
49
49
  resolution: number;
50
50
  };
51
- export declare function getConformation(unit: Unit): import("../../../../mol-model/structure/model/properties/coarse").CoarseSphereConformation | import("../../../../mol-model/structure/model/properties/coarse").CoarseGaussianConformation | import("../../../../mol-model/structure/model/properties/atomic").AtomicConformation;
51
+ export declare function getConformation(unit: Unit): import("../../../../mol-model/structure/model/properties/atomic").AtomicConformation | import("../../../../mol-model/structure/model/properties/coarse").CoarseSphereConformation | import("../../../../mol-model/structure/model/properties/coarse").CoarseGaussianConformation;
52
52
  export declare const CommonSurfaceParams: {
53
53
  ignoreHydrogens: PD.BooleanParam;
54
54
  traceOnly: PD.BooleanParam;
@@ -18,18 +18,18 @@ import { PickingId } from '../../mol-geo/geometry/picking';
18
18
  export declare function createDirectVolume2d(ctx: RuntimeContext, webgl: WebGLContext, volume: Volume, directVolume?: DirectVolume): DirectVolume;
19
19
  export declare function createDirectVolume3d(ctx: RuntimeContext, webgl: WebGLContext, volume: Volume, directVolume?: DirectVolume): DirectVolume;
20
20
  export declare function createDirectVolume(ctx: VisualContext, volume: Volume, theme: Theme, props: PD.Values<DirectVolumeParams>, directVolume?: DirectVolume): Promise<DirectVolume>;
21
- export declare function getDirectVolumeLoci(pickingId: PickingId, volume: Volume, props: DirectVolumeProps, id: number): {
21
+ export declare function getDirectVolumeLoci(pickingId: PickingId, volume: Volume, props: DirectVolumeProps, id: number): Volume.Cell.Loci | {
22
22
  kind: "empty-loci";
23
- } | Volume.Cell.Loci;
23
+ };
24
24
  export declare function eachDirectVolume(loci: Loci, volume: Volume, props: DirectVolumeProps, apply: (interval: Interval) => boolean): boolean;
25
25
  export declare const DirectVolumeParams: {
26
26
  quality: {
27
27
  isEssential: boolean;
28
28
  type: "select";
29
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
29
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
30
30
  cycle?: boolean | undefined;
31
31
  isOptional?: boolean | undefined;
32
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
32
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
33
33
  label?: string | undefined;
34
34
  description?: string | undefined;
35
35
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -76,10 +76,10 @@ export declare function getDirectVolumeParams(ctx: ThemeRegistryContext, volume:
76
76
  quality: {
77
77
  isEssential: boolean;
78
78
  type: "select";
79
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
79
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
80
80
  cycle?: boolean | undefined;
81
81
  isOptional?: boolean | undefined;
82
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
82
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
83
83
  label?: string | undefined;
84
84
  description?: string | undefined;
85
85
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -128,10 +128,10 @@ export declare const DirectVolumeRepresentationProvider: VolumeRepresentationPro
128
128
  quality: {
129
129
  isEssential: boolean;
130
130
  type: "select";
131
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
131
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
132
132
  cycle?: boolean | undefined;
133
133
  isOptional?: boolean | undefined;
134
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
134
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
135
135
  label?: string | undefined;
136
136
  description?: string | undefined;
137
137
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -45,10 +45,10 @@ export declare function IsosurfaceVisual(materialId: number, volume: Volume, pro
45
45
  quality: {
46
46
  isEssential: boolean;
47
47
  type: "select";
48
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
48
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
49
49
  cycle?: boolean | undefined;
50
50
  isOptional?: boolean | undefined;
51
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
51
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
52
52
  label?: string | undefined;
53
53
  description?: string | undefined;
54
54
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -101,10 +101,10 @@ export declare const IsosurfaceMeshParams: {
101
101
  quality: {
102
102
  isEssential: boolean;
103
103
  type: "select";
104
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
104
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
105
105
  cycle?: boolean | undefined;
106
106
  isOptional?: boolean | undefined;
107
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
107
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
108
108
  label?: string | undefined;
109
109
  description?: string | undefined;
110
110
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -159,10 +159,10 @@ export declare const IsosurfaceWireframeParams: {
159
159
  quality: {
160
160
  isEssential: boolean;
161
161
  type: "select";
162
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
162
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
163
163
  cycle?: boolean | undefined;
164
164
  isOptional?: boolean | undefined;
165
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
165
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
166
166
  label?: string | undefined;
167
167
  description?: string | undefined;
168
168
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -212,10 +212,10 @@ export declare const IsosurfaceParams: {
212
212
  quality: {
213
213
  isEssential: boolean;
214
214
  type: "select";
215
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
215
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
216
216
  cycle?: boolean | undefined;
217
217
  isOptional?: boolean | undefined;
218
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
218
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
219
219
  label?: string | undefined;
220
220
  description?: string | undefined;
221
221
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -270,10 +270,10 @@ export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: V
270
270
  quality: {
271
271
  isEssential: boolean;
272
272
  type: "select";
273
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
273
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
274
274
  cycle?: boolean | undefined;
275
275
  isOptional?: boolean | undefined;
276
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
276
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
277
277
  label?: string | undefined;
278
278
  description?: string | undefined;
279
279
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -329,10 +329,10 @@ export declare const IsosurfaceRepresentationProvider: VolumeRepresentationProvi
329
329
  quality: {
330
330
  isEssential: boolean;
331
331
  type: "select";
332
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
332
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
333
333
  cycle?: boolean | undefined;
334
334
  isOptional?: boolean | undefined;
335
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
335
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
336
336
  label?: string | undefined;
337
337
  description?: string | undefined;
338
338
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -15,10 +15,10 @@ export declare namespace VolumeRepresentationRegistry {
15
15
  quality: {
16
16
  isEssential: boolean;
17
17
  type: "select";
18
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
18
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
19
19
  cycle?: boolean | undefined;
20
20
  isOptional?: boolean | undefined;
21
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
21
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
22
22
  label?: string | undefined;
23
23
  description?: string | undefined;
24
24
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -71,10 +71,10 @@ export declare namespace VolumeRepresentationRegistry {
71
71
  quality: {
72
72
  isEssential: boolean;
73
73
  type: "select";
74
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
74
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
75
75
  cycle?: boolean | undefined;
76
76
  isOptional?: boolean | undefined;
77
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
77
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
78
78
  label?: string | undefined;
79
79
  description?: string | undefined;
80
80
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -91,7 +91,7 @@ export declare namespace VolumeRepresentationRegistry {
91
91
  legend?: import("../../mol-util/legend").Legend | undefined;
92
92
  }) | undefined;
93
93
  };
94
- dimension: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "y"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "x"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "z">>;
94
+ dimension: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "x"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "y"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "z">>;
95
95
  isoValue: import("../../mol-util/param-definition").ParamDefinition.Conditioned<Readonly<{
96
96
  kind: "absolute";
97
97
  absoluteValue: number;
@@ -114,17 +114,17 @@ export declare namespace VolumeRepresentationRegistry {
114
114
  relativeValue: number;
115
115
  }>, number>;
116
116
  }>;
117
- interpolation: import("../../mol-util/param-definition").ParamDefinition.Select<"bspline" | "nearest" | "catmulrom" | "mitchell">;
117
+ interpolation: import("../../mol-util/param-definition").ParamDefinition.Select<"nearest" | "bspline" | "catmulrom" | "mitchell">;
118
118
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
119
119
  }, "slice">;
120
120
  'direct-volume': import("./representation").VolumeRepresentationProvider<{
121
121
  quality: {
122
122
  isEssential: boolean;
123
123
  type: "select";
124
- options: readonly (readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string] | readonly ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string, string | undefined])[];
124
+ options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
125
125
  cycle?: boolean | undefined;
126
126
  isOptional?: boolean | undefined;
127
- defaultValue: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
127
+ defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
128
128
  label?: string | undefined;
129
129
  description?: string | undefined;
130
130
  legend?: import("../../mol-util/legend").Legend | undefined;
@@ -37,7 +37,7 @@ export declare type VolumeRepresentationProvider<P extends VolumeParams, Id exte
37
37
  export declare function VolumeRepresentationProvider<P extends VolumeParams, Id extends string>(p: VolumeRepresentationProvider<P, Id>): VolumeRepresentationProvider<P, Id>;
38
38
  export declare const VolumeParams: {
39
39
  alpha: PD.Numeric;
40
- quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
40
+ quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
41
41
  };
42
42
  export declare type VolumeParams = typeof VolumeParams;
43
43
  export declare function VolumeRepresentation<P extends VolumeParams>(label: string, ctx: RepresentationContext, getParams: RepresentationParamsGetter<Volume, P>, visualCtor: (materialId: number, volume: Volume, props: PD.Values<P>, webgl?: WebGLContext) => VolumeVisual<P>, getLoci: (volume: Volume, props: PD.Values<P>) => Loci): VolumeRepresentation<P>;