molstar 2.4.0 → 2.4.1

package/lib/extensions/dnatco/confal-pyramids/representation.d.ts

@@ -10,7 +10,7 @@ import { StructureRepresentation, StructureRepresentationProvider } from '../../
 import { ParamDefinition as PD } from '../../../mol-util/param-definition';
 import { ThemeRegistryContext } from '../../../mol-theme/theme';
 export declare const ConfalPyramidsParams: {
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -18,11 +18,11 @@ export declare const ConfalPyramidsParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type ConfalPyramidsParams = typeof ConfalPyramidsParams;
 export declare function getConfalPyramidsParams(ctx: ThemeRegistryContext, structure: Structure): {
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -30,12 +30,12 @@ export declare function getConfalPyramidsParams(ctx: ThemeRegistryContext, struc
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type ConfalPyramidsRepresentation = StructureRepresentation<ConfalPyramidsParams>;
 export declare function ConfalPyramidsRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, ConfalPyramidsParams>): ConfalPyramidsRepresentation;
 export declare const ConfalPyramidsRepresentationProvider: StructureRepresentationProvider<{
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -43,5 +43,5 @@ export declare const ConfalPyramidsRepresentationProvider: StructureRepresentati
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 }, "confal-pyramids">;

package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts

@@ -25,18 +25,18 @@ declare const AssemblySymmetry3D: StateTransformer<PluginStateObject.Molecule.St
     ignoreLight: boolean;
     xrayShaded: boolean;
     alpha: number;
-    quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
+    quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
     axesColor: PD.NamedParams<PD.Normalize<{
         colorValue: any;
     }>, "uniform"> | PD.NamedParams<PD.Normalize<unknown>, "byOrder">;
 }>>;
 export declare const AssemblySymmetryPresetParams: {
     ignoreHydrogens: PD.Base<boolean | undefined>;
-    quality: PD.Base<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest" | undefined>;
+    quality: PD.Base<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest" | undefined>;
     theme: PD.Base<PD.Normalize<{
-        globalName: "occupancy" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | "uniform" | undefined;
-        carbonColor: "chain-id" | "operator-name" | "element-symbol" | undefined;
-        symmetryColor: "occupancy" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | "uniform" | undefined;
+        globalName: "uniform" | "occupancy" | "element-index" | "element-symbol" | "carbohydrate-symbol" | "chain-id" | "operator-name" | "molecule-type" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "unit-index" | "uncertainty" | "entity-source" | "illustrative" | "hydrophobicity" | "model-index" | "operator-hkl" | "partial-charge" | "atom-id" | "entity-id" | undefined;
+        carbonColor: "element-symbol" | "chain-id" | "operator-name" | undefined;
+        symmetryColor: "uniform" | "occupancy" | "element-index" | "element-symbol" | "carbohydrate-symbol" | "chain-id" | "operator-name" | "molecule-type" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "unit-index" | "uncertainty" | "entity-source" | "illustrative" | "hydrophobicity" | "model-index" | "operator-hkl" | "partial-charge" | "atom-id" | "entity-id" | undefined;
         focus: PD.Normalize<{
             name: any;
             params: any;
@@ -45,7 +45,7 @@ export declare const AssemblySymmetryPresetParams: {
 };
 export declare const AssemblySymmetryPreset: StructureRepresentationPresetProvider<{
     ignoreHydrogens: boolean | undefined;
-    quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest" | undefined;
+    quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest" | undefined;
     theme: PD.Normalize<{
         globalName: any;
         carbonColor: any;

package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts

@@ -17,7 +17,7 @@ export declare const AssemblySymmetryParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     axesColor: PD.Mapped<PD.NamedParams<PD.Normalize<{
         colorValue: Color;
     }>, "uniform"> | PD.NamedParams<PD.Normalize<unknown>, "byOrder">>;

package/lib/extensions/rcsb/validation-report/behavior.d.ts

@@ -12,7 +12,7 @@ export declare const RCSBValidationReport: import("../../../mol-state/transforme
 }>;
 export declare const ValidationReportGeometryQualityPreset: StructureRepresentationPresetProvider<{
     ignoreHydrogens: boolean | undefined;
-    quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest" | undefined;
+    quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest" | undefined;
     theme: PD.Normalize<{
         globalName: any;
         carbonColor: any;
@@ -48,7 +48,7 @@ export declare const ValidationReportGeometryQualityPreset: StructureRepresentat
 }>;
 export declare const ValidationReportDensityFitPreset: StructureRepresentationPresetProvider<{
     ignoreHydrogens: boolean | undefined;
-    quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest" | undefined;
+    quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest" | undefined;
     theme: PD.Normalize<{
         globalName: any;
         carbonColor: any;
@@ -76,7 +76,7 @@ export declare const ValidationReportDensityFitPreset: StructureRepresentationPr
 }>;
 export declare const ValidationReportRandomCoilIndexPreset: StructureRepresentationPresetProvider<{
     ignoreHydrogens: boolean | undefined;
-    quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest" | undefined;
+    quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest" | undefined;
     theme: PD.Normalize<{
         globalName: any;
         carbonColor: any;

package/lib/extensions/rcsb/validation-report/representation.d.ts

@@ -24,7 +24,7 @@ export declare const IntraUnitClashParams: {
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -32,7 +32,7 @@ export declare const IntraUnitClashParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type IntraUnitClashParams = typeof IntraUnitClashParams;
 export declare function IntraUnitClashVisual(materialId: number): UnitsVisual<IntraUnitClashParams>;
@@ -49,7 +49,7 @@ export declare const InterUnitClashParams: {
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -57,12 +57,12 @@ export declare const InterUnitClashParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type InterUnitClashParams = typeof InterUnitClashParams;
 export declare function InterUnitClashVisual(materialId: number): ComplexVisual<InterUnitClashParams>;
 export declare const ClashesParams: {
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     visuals: PD.MultiSelect<"intra-clash" | "inter-clash">;
     linkCap: PD.BooleanParam;
     sizeFactor: PD.Numeric;
@@ -83,11 +83,11 @@ export declare const ClashesParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type ClashesParams = typeof ClashesParams;
 export declare function getClashesParams(ctx: ThemeRegistryContext, structure: Structure): {
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     visuals: PD.MultiSelect<"intra-clash" | "inter-clash">;
     linkCap: PD.BooleanParam;
     sizeFactor: PD.Numeric;
@@ -108,12 +108,12 @@ export declare function getClashesParams(ctx: ThemeRegistryContext, structure: S
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type ClashesRepresentation = StructureRepresentation<ClashesParams>;
 export declare function ClashesRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, ClashesParams>): ClashesRepresentation;
 export declare const ClashesRepresentationProvider: StructureRepresentationProvider<{
-    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     visuals: PD.MultiSelect<"intra-clash" | "inter-clash">;
     linkCap: PD.BooleanParam;
     sizeFactor: PD.Numeric;
@@ -134,5 +134,5 @@ export declare const ClashesRepresentationProvider: StructureRepresentationProvi
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 }, ValidationReport.Tag.Clashes>;

package/lib/mol-canvas3d/canvas3d.d.ts

@@ -98,13 +98,13 @@ export declare const Canvas3DParams: {
         selectStrength: number;
         markerPriority: number;
         xrayEdgeFalloff: number;
-        style: PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<{
+        style: PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<{
             lightIntensity: any;
             ambientIntensity: any;
             metalness: any;
             roughness: any;
             reflectivity: any;
-        }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
+        }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
         clip: PD.Normalize<{
             variant: any;
             objects: any;
@@ -244,13 +244,13 @@ export declare const DefaultCanvas3DParams: PD.Values<{
         selectStrength: number;
         markerPriority: number;
         xrayEdgeFalloff: number;
-        style: PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<{
+        style: PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<{
             lightIntensity: any;
             ambientIntensity: any;
             metalness: any;
             roughness: any;
             reflectivity: any;
-        }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
+        }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
         clip: PD.Normalize<{
             variant: any;
             objects: any;

package/lib/mol-canvas3d/helper/camera-helper.d.ts

@@ -22,7 +22,7 @@ export declare const CameraHelperParams: {
         flipSided: boolean;
         flatShaded: boolean;
         xrayShaded: boolean;
-        quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
+        quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
     }>, "on">>;
 };
 export declare type CameraHelperParams = typeof CameraHelperParams;

package/lib/mol-canvas3d/helper/handle-helper.d.ts

@@ -24,7 +24,7 @@ export declare const HandleHelperParams: {
         flipSided: boolean;
         flatShaded: boolean;
         xrayShaded: boolean;
-        quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
+        quality: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
     }>, "on">>;
 };
 export declare type HandleHelperParams = typeof HandleHelperParams;

package/lib/mol-data/int/impl/ordered-set.d.ts

@@ -31,9 +31,9 @@ export declare function findPredecessorIndex(set: OrderedSetImpl, x: number): nu
 export declare function findPredecessorIndexInInterval(set: OrderedSetImpl, x: number, bounds: I): number;
 export declare function findRange(set: OrderedSetImpl, min: number, max: number): I<number>;
 export declare function intersectionSize(a: OrderedSetImpl, b: OrderedSetImpl): number;
-export declare function union(a: OrderedSetImpl, b: OrderedSetImpl): S<number> | I<number>;
-export declare function intersect(a: OrderedSetImpl, b: OrderedSetImpl): S<number> | I<number>;
-export declare function subtract(a: OrderedSetImpl, b: OrderedSetImpl): S<number> | I<number>;
+export declare function union(a: OrderedSetImpl, b: OrderedSetImpl): I<number> | S<number>;
+export declare function intersect(a: OrderedSetImpl, b: OrderedSetImpl): I<number> | S<number>;
+export declare function subtract(a: OrderedSetImpl, b: OrderedSetImpl): I<number> | S<number>;
 export declare function forEach(set: OrderedSetImpl, f: (value: number, i: number, ctx: any) => void, ctx: any): any;
 export declare function forEachSegment(set: OrderedSetImpl, segment: (v: number) => number, f: (value: number, segIndex: number, ctx: any) => void, ctx: any): any;
 export declare function indexedIntersect(idxA: OrderedSetImpl, a: S, b: S): OrderedSetImpl;

package/lib/mol-geo/geometry/base.d.ts

@@ -22,8 +22,8 @@ export declare const VisualQualityInfo: {
     lowest: {};
 };
 export declare type VisualQuality = keyof typeof VisualQualityInfo;
-export declare const VisualQualityNames: ("custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest")[];
-export declare const VisualQualityOptions: ["custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest", string][];
+export declare const VisualQualityNames: ("auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest")[];
+export declare const VisualQualityOptions: ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string][];
 export declare const ColorSmoothingParams: {
     smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
         resolutionFactor: number;
@@ -39,7 +39,7 @@ export declare function getColorSmoothingProps(smoothColors: PD.Values<ColorSmoo
 export declare namespace BaseGeometry {
     const Params: {
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const ShadingCategory: PD.Info;

package/lib/mol-geo/geometry/cylinders/cylinders.d.ts

@@ -44,7 +44,7 @@ export declare namespace Cylinders {
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Cylinders, Params>;

package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts

@@ -72,7 +72,7 @@ export declare namespace DirectVolume {
         stepsPerCell: PD.Numeric;
         jumpLength: PD.Numeric;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<DirectVolume, Params>;

package/lib/mol-geo/geometry/image/image.d.ts

@@ -16,7 +16,7 @@ export declare const InterpolationTypes: {
     bspline: string;
 };
 export declare type InterpolationTypes = keyof typeof InterpolationTypes;
-export declare const InterpolationTypeNames: ("bspline" | "nearest" | "catmulrom" | "mitchell")[];
+export declare const InterpolationTypeNames: ("nearest" | "bspline" | "catmulrom" | "mitchell")[];
 export { Image };
 interface Image {
     readonly kind: 'image';
@@ -31,9 +31,9 @@ declare namespace Image {
     function create(imageTexture: TextureImage<Uint8Array>, corners: Float32Array, groupTexture: TextureImage<Uint8Array>, image?: Image): Image;
     function createEmpty(image?: Image): Image;
     const Params: {
-        interpolation: PD.Select<"bspline" | "nearest" | "catmulrom" | "mitchell">;
+        interpolation: PD.Select<"nearest" | "bspline" | "catmulrom" | "mitchell">;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Image, Params>;

package/lib/mol-geo/geometry/lines/lines.d.ts

@@ -40,7 +40,7 @@ export declare namespace Lines {
         sizeFactor: PD.Numeric;
         lineSizeAttenuation: PD.BooleanParam;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Lines, Params>;

package/lib/mol-geo/geometry/mesh/builder/tube.js

@@ -5,7 +5,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 import { Vec3 } from '../../../../mol-math/linear-algebra';
-import { ChunkedArray } from '../../../../mol-data/util';
+import { cantorPairing, ChunkedArray } from '../../../../mol-data/util';
 var normalVector = Vec3();
 var surfacePoint = Vec3();
 var controlPoint = Vec3();
@@ -30,24 +30,26 @@ var v3dot = Vec3.dot;
 var v3unitX = Vec3.unitX;
 var caAdd3 = ChunkedArray.add3;
 var CosSinCache = new Map();
-function getCosSin(radialSegments) {
-    if (!CosSinCache.has(radialSegments)) {
+function getCosSin(radialSegments, shift) {
+    var offset = shift ? 1 : 0;
+    var hash = cantorPairing(radialSegments, offset);
+    if (!CosSinCache.has(hash)) {
         var cos = [];
         var sin = [];
         for (var j = 0; j < radialSegments; ++j) {
-            var t = 2 * Math.PI * j / radialSegments;
+            var t = (j * 2 + offset) / radialSegments * Math.PI;
             cos[j] = Math.cos(t);
             sin[j] = Math.sin(t);
         }
-        CosSinCache.set(radialSegments, { cos: cos, sin: sin });
+        CosSinCache.set(hash, { cos: cos, sin: sin });
     }
-    return CosSinCache.get(radialSegments);
+    return CosSinCache.get(hash);
 }
 export function addTube(state, controlPoints, normalVectors, binormalVectors, linearSegments, radialSegments, widthValues, heightValues, startCap, endCap, crossSection) {
     var currentGroup = state.currentGroup, vertices = state.vertices, normals = state.normals, indices = state.indices, groups = state.groups;
     var vertexCount = vertices.elementCount;
-    var _a = getCosSin(radialSegments), cos = _a.cos, sin = _a.sin;
-    var q1 = radialSegments / 4;
+    var _a = getCosSin(radialSegments, crossSection === 'rounded'), cos = _a.cos, sin = _a.sin;
+    var q1 = Math.round(radialSegments / 4);
     var q3 = q1 * 3;
     for (var i = 0; i <= linearSegments; ++i) {
         var i3 = i * 3;
@@ -64,7 +66,15 @@ export function addTube(state, controlPoints, normalVectors, binormalVectors, li
                     ? (j < q1 || j >= q3) ? height - width : -height + width
                     : (j >= q1 && j < q3) ? -height + width : height - width;
                 v3scaleAndAdd(surfacePoint, surfacePoint, u, h);
-                add2AndScale2(normalVector, u, v, cos[j], sin[j]);
+                if (j === q1 || j === q1 - 1) {
+                    add2AndScale2(normalVector, u, v, 0, 1);
+                }
+                else if (j === q3 || j === q3 - 1) {
+                    add2AndScale2(normalVector, u, v, 0, -1);
+                }
+                else {
+                    add2AndScale2(normalVector, u, v, cos[j], sin[j]);
+                }
             }
             else {
                 add3AndScale2(surfacePoint, u, v, controlPoint, height * cos[j], width * sin[j]);

package/lib/mol-geo/geometry/mesh/builder/tube.js.map

@@ -1 +1 @@
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package/lib/mol-geo/geometry/mesh/mesh.d.ts

@@ -63,7 +63,7 @@ export declare namespace Mesh {
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Mesh, Params>;

package/lib/mol-geo/geometry/points/points.d.ts

@@ -34,13 +34,13 @@ export declare namespace Points {
         fuzzy: string;
     };
     type StyleTypes = keyof typeof StyleTypes;
-    const StyleTypeNames: ("square" | "circle" | "fuzzy")[];
+    const StyleTypeNames: ("circle" | "square" | "fuzzy")[];
     const Params: {
         sizeFactor: PD.Numeric;
         pointSizeAttenuation: PD.BooleanParam;
-        pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
+        pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Points, Params>;

package/lib/mol-geo/geometry/spheres/spheres.d.ts

@@ -35,7 +35,7 @@ export declare namespace Spheres {
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Spheres, Params>;

package/lib/mol-geo/geometry/text/text.d.ts

@@ -59,7 +59,7 @@ export declare namespace Text {
         fontVariant: PD.Select<import("./font-atlas").FontVariant>;
         fontWeight: PD.Select<import("./font-atlas").FontWeight>;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Text, Params>;

package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts

@@ -46,7 +46,7 @@ export declare namespace TextureMesh {
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
         alpha: PD.Numeric;
-        quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+        quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<TextureMesh, Params>;

package/lib/mol-gl/renderer.d.ts

@@ -59,13 +59,13 @@ export declare const RendererParams: {
     selectStrength: PD.Numeric;
     markerPriority: PD.Select<number>;
     xrayEdgeFalloff: PD.Numeric;
-    style: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<{
+    style: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<{
         lightIntensity: number;
         ambientIntensity: number;
         metalness: number;
         roughness: number;
         reflectivity: number;
-    }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">>;
+    }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">>;
     clip: PD.Group<PD.Normalize<{
         variant: Clipping.Variant;
         objects: PD.Normalize<{

package/lib/mol-io/common/typed-array.d.ts

@@ -25,6 +25,6 @@ export interface TypedArrayBufferContext {
 }
 export declare function getElementByteSize(type: TypedArrayValueType): 1 | 2 | 4;
 export declare function makeTypedArray(type: TypedArrayValueType, buffer: ArrayBuffer, byteOffset?: number, length?: number): TypedArrayValueArray;
-export declare function createTypedArray(type: TypedArrayValueType, size: number): Float32Array | Uint16Array | Int8Array | Int16Array;
+export declare function createTypedArray(type: TypedArrayValueType, size: number): Int8Array | Int16Array | Uint16Array | Float32Array;
 export declare function createTypedArrayBufferContext(size: number, type: TypedArrayValueType): TypedArrayBufferContext;
 export declare function readTypedArray(ctx: TypedArrayBufferContext, file: FileHandle, position: number, byteCount: number, valueByteOffset: number, littleEndian?: boolean): Promise<TypedArrayValueArray>;

package/lib/mol-io/reader/cif/schema/ccd.d.ts

@@ -93,7 +93,7 @@ export declare const CCD_Schema: {
          * linking monomers, monomers with some type of N-terminal (or 5')
          * cap and monomers with some type of C-terminal (or 3') cap.
          */
-        type: Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other">;
+        type: Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking">;
         /**
          * Synonym list for the component.
          */
@@ -318,7 +318,7 @@ export declare const CCD_Schema: {
         /**
          * Stereochemical configuration across a double bond.
          */
-        pdbx_stereo_config: Schema.Aliased<"E" | "Z" | "N">;
+        pdbx_stereo_config: Schema.Aliased<"N" | "E" | "Z">;
         /**
          * A flag indicating an aromatic bond.
          */

package/lib/mol-io/reader/cif/schema/density-server.d.ts

@@ -10,11 +10,11 @@ export declare const DensityServer_Header_Schema: {
         server_version: Schema.Str;
         datetime_utc: Schema.Str;
         guid: Schema.Str;
-        is_empty: Schema.Aliased<"y" | "no" | "n" | "yes">;
-        has_error: Schema.Aliased<"y" | "no" | "n" | "yes">;
+        is_empty: Schema.Aliased<"y" | "yes" | "no" | "n">;
+        has_error: Schema.Aliased<"y" | "yes" | "no" | "n">;
         error: Schema.Str;
         query_source_id: Schema.Str;
-        query_type: Schema.Aliased<"box" | "cell">;
+        query_type: Schema.Aliased<"cell" | "box">;
         query_box_type: Schema.Aliased<"cartesian" | "fractional">;
         query_box_a: Schema.Tensor;
         query_box_b: Schema.Tensor;