molstar 2.3.2 → 2.3.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (710) hide show
  1. package/CHANGELOG.md +191 -160
  2. package/LICENSE +20 -20
  3. package/README.md +176 -176
  4. package/build/viewer/embedded.html +43 -43
  5. package/build/viewer/index.html +94 -88
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/viewer/embedded.html +43 -43
  9. package/lib/apps/viewer/index.d.ts +296 -5
  10. package/lib/apps/viewer/index.html +94 -88
  11. package/lib/apps/viewer/index.js +96 -6
  12. package/lib/apps/viewer/index.js.map +1 -1
  13. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  14. package/lib/commonjs/apps/viewer/index.d.ts +295 -4
  15. package/lib/commonjs/apps/viewer/index.js +96 -6
  16. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  17. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  18. package/lib/commonjs/cli/cif2bcif/index.js +0 -0
  19. package/lib/commonjs/cli/cifschema/index.js +0 -0
  20. package/lib/commonjs/extensions/cellpack/color/generate.d.ts +1 -1
  21. package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
  22. package/lib/commonjs/extensions/cellpack/color/provided.d.ts +1 -1
  23. package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
  24. package/lib/commonjs/extensions/cellpack/curve.d.ts +2 -2
  25. package/lib/commonjs/extensions/cellpack/curve.js +2 -2
  26. package/lib/commonjs/extensions/cellpack/data.d.ts +32 -0
  27. package/lib/commonjs/extensions/cellpack/index.d.ts +1 -1
  28. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  29. package/lib/commonjs/extensions/cellpack/model.d.ts +5 -3
  30. package/lib/commonjs/extensions/cellpack/model.js +193 -55
  31. package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
  32. package/lib/commonjs/extensions/cellpack/preset.d.ts +2 -1
  33. package/lib/commonjs/extensions/cellpack/preset.js +12 -15
  34. package/lib/commonjs/extensions/cellpack/preset.js.map +1 -1
  35. package/lib/commonjs/extensions/cellpack/property.d.ts +1 -1
  36. package/lib/commonjs/extensions/cellpack/property.js +1 -1
  37. package/lib/commonjs/extensions/cellpack/representation.d.ts +53 -0
  38. package/lib/commonjs/extensions/cellpack/representation.js +47 -0
  39. package/lib/commonjs/extensions/cellpack/representation.js.map +1 -0
  40. package/lib/commonjs/extensions/cellpack/state.d.ts +16 -5
  41. package/lib/commonjs/extensions/cellpack/state.js +233 -26
  42. package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
  43. package/lib/commonjs/extensions/cellpack/util.d.ts +3 -1
  44. package/lib/commonjs/extensions/cellpack/util.js +31 -3
  45. package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
  46. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
  47. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
  48. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  49. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
  50. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  51. package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
  52. package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
  53. package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
  54. package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
  55. package/lib/commonjs/mol-canvas3d/camera.js +21 -1
  56. package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
  57. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -4
  58. package/lib/commonjs/mol-canvas3d/canvas3d.js +8 -2
  59. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  60. package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  61. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
  62. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
  63. package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
  64. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  65. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
  66. package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
  67. package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
  68. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  69. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
  70. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  71. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  72. package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
  73. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  74. package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
  75. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
  76. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +19 -11
  77. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
  78. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
  79. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +57 -15
  80. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  81. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  82. package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
  83. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  84. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  85. package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
  86. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  87. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  88. package/lib/commonjs/mol-gl/_spec/cylinders.spec.d.ts +6 -0
  89. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js +42 -0
  90. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js.map +1 -0
  91. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
  92. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js +42 -0
  93. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js.map +1 -0
  94. package/lib/commonjs/mol-gl/_spec/gl.d.ts +9 -0
  95. package/lib/commonjs/mol-gl/_spec/gl.js +33 -0
  96. package/lib/commonjs/mol-gl/_spec/gl.js.map +1 -0
  97. package/lib/commonjs/mol-gl/_spec/gl.shim.js +1 -1
  98. package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
  99. package/lib/commonjs/mol-gl/_spec/image.spec.d.ts +6 -0
  100. package/lib/commonjs/mol-gl/_spec/image.spec.js +42 -0
  101. package/lib/commonjs/mol-gl/_spec/image.spec.js.map +1 -0
  102. package/lib/commonjs/mol-gl/_spec/lines.spec.d.ts +6 -0
  103. package/lib/commonjs/mol-gl/_spec/lines.spec.js +42 -0
  104. package/lib/commonjs/mol-gl/_spec/lines.spec.js.map +1 -0
  105. package/lib/commonjs/mol-gl/_spec/mesh.spec.d.ts +6 -0
  106. package/lib/commonjs/mol-gl/_spec/mesh.spec.js +42 -0
  107. package/lib/commonjs/mol-gl/_spec/mesh.spec.js.map +1 -0
  108. package/lib/commonjs/mol-gl/_spec/points.spec.d.ts +6 -0
  109. package/lib/commonjs/mol-gl/_spec/points.spec.js +42 -0
  110. package/lib/commonjs/mol-gl/_spec/points.spec.js.map +1 -0
  111. package/lib/commonjs/mol-gl/_spec/renderer.spec.d.ts +7 -1
  112. package/lib/commonjs/mol-gl/_spec/renderer.spec.js +6 -44
  113. package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
  114. package/lib/commonjs/mol-gl/_spec/spheres.spec.d.ts +6 -0
  115. package/lib/commonjs/mol-gl/_spec/spheres.spec.js +42 -0
  116. package/lib/commonjs/mol-gl/_spec/spheres.spec.js.map +1 -0
  117. package/lib/commonjs/mol-gl/_spec/text.spec.d.ts +6 -0
  118. package/lib/commonjs/mol-gl/_spec/text.spec.js +42 -0
  119. package/lib/commonjs/mol-gl/_spec/text.spec.js.map +1 -0
  120. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
  121. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js +42 -0
  122. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
  123. package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
  124. package/lib/commonjs/mol-gl/renderer.js +3 -0
  125. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  126. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  127. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  128. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  129. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  130. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  131. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js.map +1 -1
  132. package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
  133. package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
  134. package/lib/commonjs/mol-gl/shader/lines.vert.js.map +1 -1
  135. package/lib/commonjs/mol-gl/shader/points.vert.d.ts +1 -1
  136. package/lib/commonjs/mol-gl/shader/points.vert.js +1 -1
  137. package/lib/commonjs/mol-gl/shader/points.vert.js.map +1 -1
  138. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  139. package/lib/commonjs/mol-gl/webgl/context.js +4 -2
  140. package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
  141. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +5 -5
  142. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  143. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +3 -3
  144. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  145. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -22
  146. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  147. package/lib/commonjs/mol-math/geometry/primitives/axes3d.d.ts +2 -1
  148. package/lib/commonjs/mol-math/geometry/primitives/axes3d.js +9 -2
  149. package/lib/commonjs/mol-math/geometry/primitives/axes3d.js.map +1 -1
  150. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  151. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +11 -3
  152. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  153. package/lib/commonjs/mol-math/misc.d.ts +3 -1
  154. package/lib/commonjs/mol-math/misc.js +24 -2
  155. package/lib/commonjs/mol-math/misc.js.map +1 -1
  156. package/lib/commonjs/mol-model/loci.d.ts +32 -32
  157. package/lib/commonjs/mol-model/loci.js +4 -3
  158. package/lib/commonjs/mol-model/loci.js.map +1 -1
  159. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  160. package/lib/commonjs/mol-model/structure/structure/element/loci.d.ts +1 -0
  161. package/lib/commonjs/mol-model/structure/structure/element/loci.js +14 -0
  162. package/lib/commonjs/mol-model/structure/structure/element/loci.js.map +1 -1
  163. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -3
  164. package/lib/commonjs/mol-model/structure/structure/structure.js +2 -1
  165. package/lib/commonjs/mol-model/structure/structure/structure.js.map +1 -1
  166. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  167. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  168. package/lib/commonjs/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  169. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +6 -1
  170. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js.map +1 -1
  171. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +8 -8
  172. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
  173. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
  174. package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +1 -1
  175. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +29 -3
  176. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map +1 -1
  177. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +3 -0
  178. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +3 -0
  179. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +9 -0
  180. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +12 -0
  181. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  182. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  183. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  184. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +22 -8
  185. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  186. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +1 -1
  187. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js.map +1 -1
  188. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  189. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  190. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +5 -5
  191. package/lib/commonjs/mol-plugin/commands.d.ts +6 -2
  192. package/lib/commonjs/mol-plugin/config.d.ts +1 -0
  193. package/lib/commonjs/mol-plugin/config.js +11 -3
  194. package/lib/commonjs/mol-plugin/config.js.map +1 -1
  195. package/lib/commonjs/mol-plugin/context.js +6 -4
  196. package/lib/commonjs/mol-plugin/context.js.map +1 -1
  197. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +6 -6
  198. package/lib/commonjs/mol-plugin-state/builder/data.d.ts +3 -3
  199. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +17 -17
  200. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +9 -9
  201. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  202. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +20 -16
  203. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js.map +1 -1
  204. package/lib/commonjs/mol-plugin-state/formats/shape.d.ts +2 -2
  205. package/lib/commonjs/mol-plugin-state/formats/structure.d.ts +6 -6
  206. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +26 -26
  207. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  208. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  209. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +2 -2
  210. package/lib/commonjs/mol-plugin-state/manager/interactivity.js +12 -11
  211. package/lib/commonjs/mol-plugin-state/manager/interactivity.js.map +1 -1
  212. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.d.ts +7 -2
  213. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +111 -13
  214. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js.map +1 -1
  215. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +3 -3
  216. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +4 -10
  217. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js.map +1 -1
  218. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +6 -6
  219. package/lib/commonjs/mol-plugin-state/transforms/helpers.d.ts +3 -1
  220. package/lib/commonjs/mol-plugin-state/transforms/helpers.js +7 -4
  221. package/lib/commonjs/mol-plugin-state/transforms/helpers.js.map +1 -1
  222. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +9 -9
  223. package/lib/commonjs/mol-plugin-state/transforms/model.js.map +1 -1
  224. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +18 -3
  225. package/lib/commonjs/mol-plugin-state/transforms/representation.js +54 -2
  226. package/lib/commonjs/mol-plugin-state/transforms/representation.js.map +1 -1
  227. package/lib/commonjs/mol-plugin-ui/sequence.d.ts +1 -1
  228. package/lib/commonjs/mol-plugin-ui/sequence.js +16 -2
  229. package/lib/commonjs/mol-plugin-ui/sequence.js.map +1 -1
  230. package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +11 -2
  231. package/lib/commonjs/mol-plugin-ui/structure/measurements.js +49 -6
  232. package/lib/commonjs/mol-plugin-ui/structure/measurements.js.map +1 -1
  233. package/lib/commonjs/mol-plugin-ui/structure/selection.d.ts +1 -1
  234. package/lib/commonjs/mol-repr/representation.d.ts +1 -0
  235. package/lib/commonjs/mol-repr/representation.js +10 -4
  236. package/lib/commonjs/mol-repr/representation.js.map +1 -1
  237. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +6 -5
  238. package/lib/commonjs/mol-repr/shape/loci/orientation.js +37 -51
  239. package/lib/commonjs/mol-repr/shape/loci/orientation.js.map +1 -1
  240. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +27 -0
  241. package/lib/commonjs/mol-repr/shape/loci/plane.js +61 -0
  242. package/lib/commonjs/mol-repr/shape/loci/plane.js.map +1 -0
  243. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
  244. package/lib/commonjs/mol-repr/structure/params.d.ts +1 -1
  245. package/lib/commonjs/mol-repr/structure/registry.d.ts +34 -15
  246. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +18 -6
  247. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +9 -0
  248. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
  249. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +18 -6
  250. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  251. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  252. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +40 -19
  253. package/lib/commonjs/mol-repr/structure/representation/line.js +10 -4
  254. package/lib/commonjs/mol-repr/structure/representation/line.js.map +1 -1
  255. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  256. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
  257. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +12 -4
  258. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +20 -9
  259. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  260. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +4 -2
  261. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +13 -8
  262. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  263. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +12 -4
  264. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +21 -7
  265. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  266. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +4 -2
  267. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +14 -6
  268. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  269. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +3 -0
  270. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +3 -0
  271. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +26 -0
  272. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +77 -0
  273. package/lib/commonjs/mol-repr/structure/visual/element-cross.js.map +1 -0
  274. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  275. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
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- //
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- // Links
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- //
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- // Improve readability of focused elements when they are also in an
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- //
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- // Address styling not present in IE 8/9/10/11, Safari, and Chrome.
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- abbr[title] {
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- border-bottom: 1px dotted;
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- }
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-
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- //
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- // Address style set to `bolder` in Firefox 4+, Safari, and Chrome.
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- //
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- b,
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- strong {
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- font-weight: bold;
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- }
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-
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- //
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- font-size: 80%;
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- }
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- img {
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- border: 0;
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- }
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-
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- //
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- // Correct overflow not hidden in IE 9/10/11.
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- //
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- overflow: hidden;
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- }
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-
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- // Forms
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- // Known limitation: by default, Chrome and Safari on OS X allow very limited
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- // styling of `select`, unless a `border` property is set.
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- //
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-
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- //
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- // 1. Correct color not being inherited.
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- // Known issue: affects color of disabled elements.
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- // 2. Correct font properties not being inherited.
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- // 3. Address margins set differently in Firefox 4+, Safari, and Chrome.
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- //
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- // Correct `button` style inheritance in Firefox, IE 8/9/10/11, and Opera.
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- // Correct `select` style inheritance in Firefox.
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- //
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- select {
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- overflow: auto;
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+ /*! normalize.css v3.0.3 | MIT License | github.com/necolas/normalize.css */
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+
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+ //
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+ // 1. Set default font family to sans-serif.
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+ // 2. Prevent iOS and IE text size adjust after device orientation change,
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+ // without disabling user zoom.
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+ //
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+ * {
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+ box-sizing: border-box; // 1
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+ }
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+
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+ //
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+ // Address `[hidden]` styling not present in IE 8/9/10.
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+ // Hide the `template` element in IE 8/9/10/11, Safari, and Firefox < 22.
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+ //
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+
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+ [hidden],
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+ template {
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+ display: none;
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+ }
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+
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+ // Links
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+ // ==========================================================================
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+
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+ //
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+ // Remove the gray background color from active links in IE 10.
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+ //
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+
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+ a {
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+ background-color: transparent;
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+ }
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+
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+ //
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+ // Improve readability of focused elements when they are also in an
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+ // active/hover state.
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+ //
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+
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+ a:active,
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+ a:hover {
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+ outline: 0;
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+ }
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+
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+ // Text-level semantics
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+ // ==========================================================================
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+
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+ //
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+ // Address styling not present in IE 8/9/10/11, Safari, and Chrome.
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+ //
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+
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+ abbr[title] {
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+ border-bottom: 1px dotted;
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+ }
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+
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+ //
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+ // Address style set to `bolder` in Firefox 4+, Safari, and Chrome.
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+ //
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+
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+ b,
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+ strong {
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+ font-weight: bold;
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+ }
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+
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+ //
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+ // Address inconsistent and variable font size in all browsers.
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+ //
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+
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+ small {
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+ font-size: 80%;
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+ }
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+
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+ // Embedded content
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+ // ==========================================================================
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+
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+ //
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+ // Remove border when inside `a` element in IE 8/9/10.
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+ //
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+
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+ img {
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+ border: 0;
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+ }
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+
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+ //
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+ // Correct overflow not hidden in IE 9/10/11.
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+ //
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+
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+ svg:not(:root) {
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+ overflow: hidden;
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+ }
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+
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+ // Forms
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+ // ==========================================================================
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+
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+ //
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+ // Known limitation: by default, Chrome and Safari on OS X allow very limited
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+ // styling of `select`, unless a `border` property is set.
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+ //
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+
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+ //
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+ // 1. Correct color not being inherited.
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+ // Known issue: affects color of disabled elements.
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+ // 2. Correct font properties not being inherited.
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+ // 3. Address margins set differently in Firefox 4+, Safari, and Chrome.
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+ //
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+
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+ button,
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+ input,
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+ optgroup,
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+ select,
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+ textarea {
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+ color: inherit; // 1
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+ font: inherit; // 2
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+ margin: 0; // 3
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+ }
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+
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+ //
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+ // Address `overflow` set to `hidden` in IE 8/9/10/11.
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+ //
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+
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+ button {
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+ overflow: visible;
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+ }
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+
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+ //
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+ // Address inconsistent `text-transform` inheritance for `button` and `select`.
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+ // All other form control elements do not inherit `text-transform` values.
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+ // Correct `button` style inheritance in Firefox, IE 8/9/10/11, and Opera.
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+ // Correct `select` style inheritance in Firefox.
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+ //
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+
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+ button,
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+ select {
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+ text-transform: none;
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+ }
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+
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+ //
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+ // 1. Avoid the WebKit bug in Android 4.0.* where (2) destroys native `audio`
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+ // and `video` controls.
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+ // 2. Correct inability to style clickable `input` types in iOS.
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+ // 3. Improve usability and consistency of cursor style between image-type
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+ // `input` and others.
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+ //
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+
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+ button,
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+ html input[type="button"], // 1
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+ input[type="reset"],
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+ input[type="submit"] {
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+ -webkit-appearance: button; // 2
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+ cursor: pointer; // 3
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+ }
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+
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+ //
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+ // Re-set default cursor for disabled elements.
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+ //
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+
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+ button[disabled],
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+ html input[disabled] {
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+ cursor: default;
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+ }
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+
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+ //
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+ // Remove inner padding and border in Firefox 4+.
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+ //
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+
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+ button::-moz-focus-inner,
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+ input::-moz-focus-inner {
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+ border: 0;
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+ padding: 0;
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+ }
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+
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+ //
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+ // Address Firefox 4+ setting `line-height` on `input` using `!important` in
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+ // the UA stylesheet.
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+ //
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+
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+ input {
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+ line-height: normal;
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+ }
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+
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+ //
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+ // It's recommended that you don't attempt to style these elements.
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+ // Firefox's implementation doesn't respect box-sizing, padding, or width.
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+ //
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+ // 1. Address box sizing set to `content-box` in IE 8/9/10.
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+ // 2. Remove excess padding in IE 8/9/10.
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+ //
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+
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+ input[type="checkbox"],
188
+ input[type="radio"] {
189
+ box-sizing: border-box; // 1
190
+ padding: 0; // 2
191
+ }
192
+
193
+ //
194
+ // Fix the cursor style for Chrome's increment/decrement buttons. For certain
195
+ // `font-size` values of the `input`, it causes the cursor style of the
196
+ // decrement button to change from `default` to `text`.
197
+ //
198
+
199
+ input[type="number"]::-webkit-inner-spin-button,
200
+ input[type="number"]::-webkit-outer-spin-button {
201
+ height: auto;
202
+ }
203
+
204
+ //
205
+ // Remove default vertical scrollbar in IE 8/9/10/11.
206
+ //
207
+
208
+ textarea {
209
+ overflow: auto;
210
210
  }
@@ -1,41 +1,41 @@
1
-
2
- @mixin non-selectable {
3
- -webkit-user-select: none; /* Chrome/Safari */
4
- -moz-user-select: none; /* Firefox */
5
- -ms-user-select: none; /* IE10+ */
6
- /* Rules below not implemented in browsers yet */
7
- -o-user-select: none;
8
- user-select: none;
9
-
10
- cursor: default;
11
- }
12
-
13
- ::-webkit-scrollbar {
14
- width: 10px;
15
- height:10px;
16
- }
17
-
18
- ::-webkit-scrollbar-track {
19
- //-webkit-box-shadow: inset 0 0 6px rgba(0,0,0,0.8);
20
- border-radius: 0;
21
- background-color: color-lower-contrast($control-background, 4%);
22
- }
23
-
24
- ::-webkit-scrollbar-thumb {
25
- border-radius: 0;
26
- //-webkit-box-shadow: inset 0 0 6px rgba(0,0,0,0.9);
27
- background-color: color-lower-contrast($control-background, 8%);
28
- }
29
-
30
- @import 'components/controls-base';
31
- @import 'components/controls';
32
- @import 'components/slider';
33
- @import 'components/misc';
34
- @import 'components/tasks';
35
- @import 'components/viewport';
36
- @import 'components/log';
37
- @import 'components/sequence';
38
- @import 'components/transformer';
39
- @import 'components/toast';
40
- @import 'components/help';
1
+
2
+ @mixin non-selectable {
3
+ -webkit-user-select: none; /* Chrome/Safari */
4
+ -moz-user-select: none; /* Firefox */
5
+ -ms-user-select: none; /* IE10+ */
6
+ /* Rules below not implemented in browsers yet */
7
+ -o-user-select: none;
8
+ user-select: none;
9
+
10
+ cursor: default;
11
+ }
12
+
13
+ ::-webkit-scrollbar {
14
+ width: 10px;
15
+ height:10px;
16
+ }
17
+
18
+ ::-webkit-scrollbar-track {
19
+ //-webkit-box-shadow: inset 0 0 6px rgba(0,0,0,0.8);
20
+ border-radius: 0;
21
+ background-color: color-lower-contrast($control-background, 4%);
22
+ }
23
+
24
+ ::-webkit-scrollbar-thumb {
25
+ border-radius: 0;
26
+ //-webkit-box-shadow: inset 0 0 6px rgba(0,0,0,0.9);
27
+ background-color: color-lower-contrast($control-background, 8%);
28
+ }
29
+
30
+ @import 'components/controls-base';
31
+ @import 'components/controls';
32
+ @import 'components/slider';
33
+ @import 'components/misc';
34
+ @import 'components/tasks';
35
+ @import 'components/viewport';
36
+ @import 'components/log';
37
+ @import 'components/sequence';
38
+ @import 'components/transformer';
39
+ @import 'components/toast';
40
+ @import 'components/help';
41
41
  @import 'components/line-graph';
@@ -1,86 +1,86 @@
1
-
2
- // measures
3
-
4
- $control-label-width: 110px;
5
- $control-label-short-width: 70px;
6
- $row-height: 32px;
7
- $control-spacing: 10px;
8
- $entity-subtree-offset: 8px;
9
- $info-vertical-padding: 3px;
10
- $slider-border-radius-base: 6px;
11
-
12
- // layout
13
- $expanded-top-height: 100px;
14
- $expanded-bottom-height: 70px; // 3 * $row-height + 2;
15
- $expanded-right-width: 300px;
16
- $expanded-left-width: 330px;
17
-
18
- $collapsed-left-width: $row-height;
19
-
20
- $expanded-portrait-bottom-height: 10 * ($row-height + 1) + 3 * $control-spacing + 1;
21
- $expanded-portrait-top-height: 3 * $row-height + 1;
22
-
23
- $standard-bottom-height: 8 * ($row-height + 1) + 3 * $control-spacing + 1;
24
- $standard-top-height: 3 * $row-height + 1;
25
-
26
-
27
- $color-accent-cyan: color-lower-contrast(#95a5a6, 15%);
28
- $color-accent-red: color-lower-contrast(#e74c3c, 15%);
29
- $color-accent-gray: color-lower-contrast(#34495e, 10%);
30
- $color-accent-green: color-lower-contrast(#2ecc71, 10%);
31
- $color-accent-purple: color-lower-contrast(#9b59b6, 10%);
32
- $color-accent-blue: color-lower-contrast(#3498db, 5%);
33
- $color-accent-orange: color-lower-contrast(#e67e22, 5%);
34
-
35
- // TypeClass = 'Root' | 'Group' | 'Data' | 'Object' | 'Representation3D' | 'Behavior'
36
-
37
- $type-class-Root: $default-background;
38
- $type-class-Data: color-lower-contrast(#95a5a6, 15%);
39
- $type-class-Object: color-lower-contrast(#2ecc71, 10%);
40
- $type-class-Behavior: color-lower-contrast(#9b59b6, 10%);
41
- $type-class-Representation3D: color-lower-contrast(#3498db, 5%);
42
- $type-class-Group: color-lower-contrast(#e67e22, 5%);
43
-
44
- //////////////////////////////////////////////////
45
- // COLORS and COMPUTED COLORS
46
-
47
- $slider-disabledColor: #ccc;
48
-
49
- $control-background: color-increase-contrast($default-background, 6.5%);
50
- $border-color: color-increase-contrast($default-background, 15%);
51
- $msp-form-control-background: color-lower-contrast($default-background, 2.5%);
52
-
53
- // buttons
54
- $msp-btn-link-font-color: $font-color;
55
- $msp-btn-link-toggle-on-font-color: $font-color;
56
- $msp-btn-link-toggle-off-font-color: color-lower-contrast($font-color, 33%);
57
-
58
- // used for "actions" -- i.e. + in selection
59
- $msp-btn-remove-font-color: $font-color;
60
-
61
- $msp-btn-action-background: $msp-form-control-background;
62
-
63
- // update selection etc
64
- //!! $msp-btn-commit-on-font-color: $entity-current-font-color;
65
- $msp-btn-commit-on-hover-font-color: color-lower-contrast($msp-btn-commit-on-font-color, 20%); //!!Change
66
- $msp-btn-commit-on-background: color-lower-contrast($default-background, 2%);
67
- $msp-btn-commit-off-background: color-lower-contrast($default-background, 4%); //$control-background;
68
- $msp-btn-commit-off-font-color: $font-color;
69
-
70
- // log
71
- $log-font-color: color-lower-contrast($font-color, 5%);
72
- $log-timestamp-font-color: color-lower-contrast($font-color, 20%);
73
-
74
- // highlight
75
- $highlight-info-font-color: $hover-font-color;
76
- $highlight-info-additional-font-color: color-lower-contrast($hover-font-color, 20%);
77
-
78
- // entity state
79
- $entity-color-fully-visible: $font-color;
80
- $entity-color-not-visible: color-lower-contrast($font-color, 66%);
81
- $entity-color-partialy-visible: color-lower-contrast($font-color, 33%);
82
- $entity-tag-color: color-lower-contrast($font-color, 20%);
83
-
84
- // sequence
85
- $sequence-background: $default-background;
1
+
2
+ // measures
3
+
4
+ $control-label-width: 110px;
5
+ $control-label-short-width: 70px;
6
+ $row-height: 32px;
7
+ $control-spacing: 10px;
8
+ $entity-subtree-offset: 8px;
9
+ $info-vertical-padding: 3px;
10
+ $slider-border-radius-base: 6px;
11
+
12
+ // layout
13
+ $expanded-top-height: 100px;
14
+ $expanded-bottom-height: 70px; // 3 * $row-height + 2;
15
+ $expanded-right-width: 300px;
16
+ $expanded-left-width: 330px;
17
+
18
+ $collapsed-left-width: $row-height;
19
+
20
+ $expanded-portrait-bottom-height: 10 * ($row-height + 1) + 3 * $control-spacing + 1;
21
+ $expanded-portrait-top-height: 3 * $row-height + 1;
22
+
23
+ $standard-bottom-height: 8 * ($row-height + 1) + 3 * $control-spacing + 1;
24
+ $standard-top-height: 3 * $row-height + 1;
25
+
26
+
27
+ $color-accent-cyan: color-lower-contrast(#95a5a6, 15%);
28
+ $color-accent-red: color-lower-contrast(#e74c3c, 15%);
29
+ $color-accent-gray: color-lower-contrast(#34495e, 10%);
30
+ $color-accent-green: color-lower-contrast(#2ecc71, 10%);
31
+ $color-accent-purple: color-lower-contrast(#9b59b6, 10%);
32
+ $color-accent-blue: color-lower-contrast(#3498db, 5%);
33
+ $color-accent-orange: color-lower-contrast(#e67e22, 5%);
34
+
35
+ // TypeClass = 'Root' | 'Group' | 'Data' | 'Object' | 'Representation3D' | 'Behavior'
36
+
37
+ $type-class-Root: $default-background;
38
+ $type-class-Data: color-lower-contrast(#95a5a6, 15%);
39
+ $type-class-Object: color-lower-contrast(#2ecc71, 10%);
40
+ $type-class-Behavior: color-lower-contrast(#9b59b6, 10%);
41
+ $type-class-Representation3D: color-lower-contrast(#3498db, 5%);
42
+ $type-class-Group: color-lower-contrast(#e67e22, 5%);
43
+
44
+ //////////////////////////////////////////////////
45
+ // COLORS and COMPUTED COLORS
46
+
47
+ $slider-disabledColor: #ccc;
48
+
49
+ $control-background: color-increase-contrast($default-background, 6.5%);
50
+ $border-color: color-increase-contrast($default-background, 15%);
51
+ $msp-form-control-background: color-lower-contrast($default-background, 2.5%);
52
+
53
+ // buttons
54
+ $msp-btn-link-font-color: $font-color;
55
+ $msp-btn-link-toggle-on-font-color: $font-color;
56
+ $msp-btn-link-toggle-off-font-color: color-lower-contrast($font-color, 33%);
57
+
58
+ // used for "actions" -- i.e. + in selection
59
+ $msp-btn-remove-font-color: $font-color;
60
+
61
+ $msp-btn-action-background: $msp-form-control-background;
62
+
63
+ // update selection etc
64
+ //!! $msp-btn-commit-on-font-color: $entity-current-font-color;
65
+ $msp-btn-commit-on-hover-font-color: color-lower-contrast($msp-btn-commit-on-font-color, 20%); //!!Change
66
+ $msp-btn-commit-on-background: color-lower-contrast($default-background, 2%);
67
+ $msp-btn-commit-off-background: color-lower-contrast($default-background, 4%); //$control-background;
68
+ $msp-btn-commit-off-font-color: $font-color;
69
+
70
+ // log
71
+ $log-font-color: color-lower-contrast($font-color, 5%);
72
+ $log-timestamp-font-color: color-lower-contrast($font-color, 20%);
73
+
74
+ // highlight
75
+ $highlight-info-font-color: $hover-font-color;
76
+ $highlight-info-additional-font-color: color-lower-contrast($hover-font-color, 20%);
77
+
78
+ // entity state
79
+ $entity-color-fully-visible: $font-color;
80
+ $entity-color-not-visible: color-lower-contrast($font-color, 66%);
81
+ $entity-color-partialy-visible: color-lower-contrast($font-color, 33%);
82
+ $entity-tag-color: color-lower-contrast($font-color, 20%);
83
+
84
+ // sequence
85
+ $sequence-background: $default-background;
86
86
  $sequence-number-color: $hover-font-color;
@@ -1,2 +1,2 @@
1
- @import 'colors/blue';
1
+ @import 'colors/blue';
2
2
  @import 'base/base';