molstar 2.3.2 → 2.3.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +191 -160
- package/LICENSE +20 -20
- package/README.md +176 -176
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +94 -88
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.d.ts +296 -5
- package/lib/apps/viewer/index.html +94 -88
- package/lib/apps/viewer/index.js +96 -6
- package/lib/apps/viewer/index.js.map +1 -1
- package/lib/cli/chem-comp-dict/util.d.ts +4 -4
- package/lib/commonjs/apps/viewer/index.d.ts +295 -4
- package/lib/commonjs/apps/viewer/index.js +96 -6
- package/lib/commonjs/apps/viewer/index.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
- package/lib/commonjs/cli/cif2bcif/index.js +0 -0
- package/lib/commonjs/cli/cifschema/index.js +0 -0
- package/lib/commonjs/extensions/cellpack/color/generate.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
- package/lib/commonjs/extensions/cellpack/color/provided.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
- package/lib/commonjs/extensions/cellpack/curve.d.ts +2 -2
- package/lib/commonjs/extensions/cellpack/curve.js +2 -2
- package/lib/commonjs/extensions/cellpack/data.d.ts +32 -0
- package/lib/commonjs/extensions/cellpack/index.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/index.js +1 -1
- package/lib/commonjs/extensions/cellpack/model.d.ts +5 -3
- package/lib/commonjs/extensions/cellpack/model.js +193 -55
- package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/preset.d.ts +2 -1
- package/lib/commonjs/extensions/cellpack/preset.js +12 -15
- package/lib/commonjs/extensions/cellpack/preset.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/property.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/property.js +1 -1
- package/lib/commonjs/extensions/cellpack/representation.d.ts +53 -0
- package/lib/commonjs/extensions/cellpack/representation.js +47 -0
- package/lib/commonjs/extensions/cellpack/representation.js.map +1 -0
- package/lib/commonjs/extensions/cellpack/state.d.ts +16 -5
- package/lib/commonjs/extensions/cellpack/state.js +233 -26
- package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/util.d.ts +3 -1
- package/lib/commonjs/extensions/cellpack/util.js +31 -3
- package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
- package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
- package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
- package/lib/commonjs/mol-canvas3d/camera.js +21 -1
- package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -4
- package/lib/commonjs/mol-canvas3d/canvas3d.js +8 -2
- package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
- package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
- package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
- package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
- package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +19 -11
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +57 -15
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/cylinders.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/cylinders.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/cylinders.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/gl.d.ts +9 -0
- package/lib/commonjs/mol-gl/_spec/gl.js +33 -0
- package/lib/commonjs/mol-gl/_spec/gl.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/gl.shim.js +1 -1
- package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/image.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/image.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/image.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/lines.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/lines.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/lines.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/mesh.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/mesh.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/mesh.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/points.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/points.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/points.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/renderer.spec.d.ts +7 -1
- package/lib/commonjs/mol-gl/_spec/renderer.spec.js +6 -44
- package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/spheres.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/spheres.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/spheres.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/text.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/text.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/text.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
- package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js +42 -0
- package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
- package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
- package/lib/commonjs/mol-gl/renderer.js +3 -0
- package/lib/commonjs/mol-gl/renderer.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/lines.vert.js.map +1 -1
- package/lib/commonjs/mol-gl/shader/points.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/points.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/points.vert.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/context.js +4 -2
- package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +5 -5
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -22
- package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.d.ts +2 -1
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.js +9 -2
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +11 -3
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
- package/lib/commonjs/mol-math/misc.d.ts +3 -1
- package/lib/commonjs/mol-math/misc.js +24 -2
- package/lib/commonjs/mol-math/misc.js.map +1 -1
- package/lib/commonjs/mol-model/loci.d.ts +32 -32
- package/lib/commonjs/mol-model/loci.js +4 -3
- package/lib/commonjs/mol-model/loci.js.map +1 -1
- package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/loci.d.ts +1 -0
- package/lib/commonjs/mol-model/structure/structure/element/loci.js +14 -0
- package/lib/commonjs/mol-model/structure/structure/element/loci.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -3
- package/lib/commonjs/mol-model/structure/structure/structure.js +2 -1
- package/lib/commonjs/mol-model/structure/structure/structure.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.d.ts +2 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +6 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js.map +1 -1
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +8 -8
- package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
- package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
- package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +29 -3
- package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map +1 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +3 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +3 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +9 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +12 -0
- package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
- package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +22 -8
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js.map +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +5 -5
- package/lib/commonjs/mol-plugin/commands.d.ts +6 -2
- package/lib/commonjs/mol-plugin/config.d.ts +1 -0
- package/lib/commonjs/mol-plugin/config.js +11 -3
- package/lib/commonjs/mol-plugin/config.js.map +1 -1
- package/lib/commonjs/mol-plugin/context.js +6 -4
- package/lib/commonjs/mol-plugin/context.js.map +1 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/builder/data.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +17 -17
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +9 -9
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +20 -16
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js.map +1 -1
- package/lib/commonjs/mol-plugin-state/formats/shape.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/formats/structure.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +26 -26
- package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +7 -7
- package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/manager/interactivity.js +12 -11
- package/lib/commonjs/mol-plugin-state/manager/interactivity.js.map +1 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/measurement.d.ts +7 -2
- package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +111 -13
- package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js.map +1 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +4 -10
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.js.map +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/transforms/helpers.d.ts +3 -1
- package/lib/commonjs/mol-plugin-state/transforms/helpers.js +7 -4
- package/lib/commonjs/mol-plugin-state/transforms/helpers.js.map +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +9 -9
- package/lib/commonjs/mol-plugin-state/transforms/model.js.map +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +18 -3
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +54 -2
- package/lib/commonjs/mol-plugin-state/transforms/representation.js.map +1 -1
- package/lib/commonjs/mol-plugin-ui/sequence.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/sequence.js +16 -2
- package/lib/commonjs/mol-plugin-ui/sequence.js.map +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +11 -2
- package/lib/commonjs/mol-plugin-ui/structure/measurements.js +49 -6
- package/lib/commonjs/mol-plugin-ui/structure/measurements.js.map +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/selection.d.ts +1 -1
- package/lib/commonjs/mol-repr/representation.d.ts +1 -0
- package/lib/commonjs/mol-repr/representation.js +10 -4
- package/lib/commonjs/mol-repr/representation.js.map +1 -1
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +6 -5
- package/lib/commonjs/mol-repr/shape/loci/orientation.js +37 -51
- package/lib/commonjs/mol-repr/shape/loci/orientation.js.map +1 -1
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +27 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.js +61 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.js.map +1 -0
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/params.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/registry.d.ts +34 -15
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +18 -6
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +9 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +18 -6
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +40 -19
- package/lib/commonjs/mol-repr/structure/representation/line.js +10 -4
- package/lib/commonjs/mol-repr/structure/representation/line.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +12 -4
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +20 -9
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +4 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +13 -8
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +12 -4
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +21 -7
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +4 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +14 -6
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +26 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.js +77 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.js.map +1 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +22 -15
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +30 -16
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +2 -1
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/color.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/util/link.d.ts +14 -4
- package/lib/commonjs/mol-repr/structure/visual/util/link.js +90 -37
- package/lib/commonjs/mol-repr/structure/visual/util/link.js.map +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts +2 -2
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +5 -5
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +3 -3
- package/lib/commonjs/mol-repr/volume/registry.d.ts +3 -3
- package/lib/commonjs/mol-repr/volume/slice.d.ts +3 -3
- package/lib/commonjs/mol-script/language/builder.d.ts +0 -1
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- package/lib/mol-repr/structure/visual/element-cross.js.map +1 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
- package/lib/mol-repr/structure/visual/label-text.d.ts +1 -1
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
- package/lib/mol-repr/structure/visual/orientation-axes-mesh.d.ts +35 -0
- package/lib/mol-repr/structure/visual/orientation-axes-mesh.js +43 -0
- package/lib/mol-repr/structure/visual/orientation-axes-mesh.js.map +1 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.d.ts +31 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js +48 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js.map +1 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +3 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +22 -15
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.js.map +1 -1
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.js +1 -1
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.js.map +1 -1
- package/lib/mol-repr/structure/visual/util/bond.d.ts +18 -4
- package/lib/mol-repr/structure/visual/util/bond.js +2 -1
- package/lib/mol-repr/structure/visual/util/bond.js.map +1 -1
- package/lib/mol-repr/structure/visual/util/color.d.ts +2 -2
- package/lib/mol-repr/structure/visual/util/element.d.ts +4 -4
- package/lib/mol-repr/structure/visual/util/link.d.ts +14 -4
- package/lib/mol-repr/structure/visual/util/link.js +90 -37
- package/lib/mol-repr/structure/visual/util/link.js.map +1 -1
- package/lib/mol-repr/structure/visual/util/orientation.d.ts +17 -0
- package/lib/mol-repr/structure/visual/util/orientation.js +71 -0
- package/lib/mol-repr/structure/visual/util/orientation.js.map +1 -0
- package/lib/mol-repr/structure/visual/util/polymer.d.ts +2 -2
- package/lib/mol-repr/volume/direct-volume.d.ts +5 -5
- package/lib/mol-repr/volume/registry.d.ts +3 -3
- package/lib/mol-repr/volume/slice.d.ts +6 -6
- package/lib/mol-script/language/builder.d.ts +0 -1
- package/lib/mol-task/util/scheduler.d.ts +0 -1
- package/lib/mol-theme/color/atom-id.d.ts +12 -12
- package/lib/mol-theme/color/chain-id.d.ts +12 -12
- package/lib/mol-theme/color/element-index.d.ts +12 -12
- package/lib/mol-theme/color/element-symbol.d.ts +12 -12
- package/lib/mol-theme/color/entity-id.d.ts +12 -12
- package/lib/mol-theme/color/entity-source.d.ts +12 -12
- package/lib/mol-theme/color/illustrative.d.ts +12 -12
- package/lib/mol-theme/color/model-index.d.ts +12 -12
- package/lib/mol-theme/color/operator-hkl.d.ts +12 -12
- package/lib/mol-theme/color/operator-name.d.ts +12 -12
- package/lib/mol-theme/color/polymer-id.d.ts +12 -12
- package/lib/mol-theme/color/polymer-index.d.ts +12 -12
- package/lib/mol-theme/color/unit-index.d.ts +12 -12
- package/lib/mol-theme/color.d.ts +78 -78
- package/lib/mol-theme/label.d.ts +1 -0
- package/lib/mol-theme/label.js +9 -0
- package/lib/mol-theme/label.js.map +1 -1
- package/lib/mol-util/color/palette.d.ts +12 -12
- package/lib/servers/model/config.js +0 -1
- package/lib/servers/model/config.js.map +1 -1
- package/lib/servers/volume/config.js +0 -1
- package/lib/servers/volume/config.js.map +1 -1
- package/lib/tests/browser/index.html +36 -36
- package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
- package/package.json +159 -155
- package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js +0 -5
- package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js.map +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.d.ts +0 -6
- package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js +0 -40
- package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js.map +0 -1
- package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js +0 -3
- package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js.map +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts +0 -37
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.js +0 -116
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.js.map +0 -1
- package/lib/commonjs/mol-script/util/residue-list.d.ts +0 -7
- package/lib/commonjs/mol-script/util/residue-list.js +0 -63
- package/lib/commonjs/mol-script/util/residue-list.js.map +0 -1
- package/lib/mol-gl/shader/chunks/wboit-params.glsl.d.ts +0 -1
- package/lib/mol-gl/shader/chunks/wboit-params.glsl.js +0 -2
- package/lib/mol-gl/shader/chunks/wboit-params.glsl.js.map +0 -1
- package/lib/mol-model/structure/model/properties/utils/guess-element.d.ts +0 -6
- package/lib/mol-model/structure/model/properties/utils/guess-element.js +0 -36
- package/lib/mol-model/structure/model/properties/utils/guess-element.js.map +0 -1
- package/lib/mol-model-formats/structure/mol copy.d.ts +0 -17
- package/lib/mol-model-formats/structure/mol copy.js +0 -86
- package/lib/mol-model-formats/structure/mol copy.js.map +0 -1
- package/lib/mol-repr/structure/visual/aromatic-ring-mesh.d.ts +0 -0
- package/lib/mol-repr/structure/visual/aromatic-ring-mesh.js +0 -3
- package/lib/mol-repr/structure/visual/aromatic-ring-mesh.js.map +0 -1
- package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts +0 -37
- package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.js +0 -112
- package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.js.map +0 -1
- package/lib/mol-script/util/residue-list.d.ts +0 -7
- package/lib/mol-script/util/residue-list.js +0 -59
- package/lib/mol-script/util/residue-list.js.map +0 -1
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left: 0;
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.msp-layout-standard {
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overflow-y: auto;
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}
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.msp-layout-static {
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overflow: hidden;
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}
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.msp-layout-top, .msp-layout-main, .msp-layout-bottom {
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.msp-layout-static {
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left: 0;
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top: 0;
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bottom: 0;
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}
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}
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.msp-layout-right {
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.msp-layout-static {
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left: 0;
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right: 0;
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top: 0;
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bottom: 0; // height: $row-height + $control-spacing;
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}
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.msp-layout-scrollable {
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left: 0;
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right: 0;
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top: $row-height + $control-spacing + 1;
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bottom: 0;
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}
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}
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.msp-layout-left {
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.msp-layout-static {
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left: 0;
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right: 0;
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bottom: 0;
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top: 0;
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}
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1
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+
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|
+
.msp-layout-expanded, .msp-layout-standard {
|
|
4
|
+
left: 0;
|
|
5
|
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right: 0;
|
|
6
|
+
top: 0;
|
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7
|
+
bottom: 0;
|
|
8
|
+
}
|
|
9
|
+
|
|
10
|
+
.msp-layout-standard {
|
|
11
|
+
border: 1px solid $border-color;
|
|
12
|
+
}
|
|
13
|
+
|
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14
|
+
.msp-layout-region {
|
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|
+
overflow: hidden;
|
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16
|
+
}
|
|
17
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+
|
|
18
|
+
.msp-layout-static, .msp-layout-scrollable {
|
|
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|
+
position: absolute;
|
|
20
|
+
}
|
|
21
|
+
|
|
22
|
+
.msp-scrollable {
|
|
23
|
+
overflow-y: auto;
|
|
24
|
+
}
|
|
25
|
+
|
|
26
|
+
.msp-scrollable-container {
|
|
27
|
+
position: absolute;
|
|
28
|
+
left: 0;
|
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|
+
right: 0;
|
|
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|
+
top: 0;
|
|
31
|
+
bottom: 0;
|
|
32
|
+
overflow-y: auto;
|
|
33
|
+
}
|
|
34
|
+
|
|
35
|
+
.msp-layout-static {
|
|
36
|
+
overflow: hidden;
|
|
37
|
+
}
|
|
38
|
+
|
|
39
|
+
.msp-layout-top, .msp-layout-main, .msp-layout-bottom {
|
|
40
|
+
.msp-layout-static {
|
|
41
|
+
left: 0;
|
|
42
|
+
right: 0;
|
|
43
|
+
top: 0;
|
|
44
|
+
bottom: 0;
|
|
45
|
+
}
|
|
46
|
+
}
|
|
47
|
+
|
|
48
|
+
.msp-layout-right {
|
|
49
|
+
.msp-layout-static {
|
|
50
|
+
left: 0;
|
|
51
|
+
right: 0;
|
|
52
|
+
top: 0;
|
|
53
|
+
bottom: 0; // height: $row-height + $control-spacing;
|
|
54
|
+
}
|
|
55
|
+
|
|
56
|
+
.msp-layout-scrollable {
|
|
57
|
+
left: 0;
|
|
58
|
+
right: 0;
|
|
59
|
+
top: $row-height + $control-spacing + 1;
|
|
60
|
+
bottom: 0;
|
|
61
|
+
}
|
|
62
|
+
|
|
63
|
+
}
|
|
64
|
+
|
|
65
|
+
.msp-layout-left {
|
|
66
|
+
.msp-layout-static {
|
|
67
|
+
left: 0;
|
|
68
|
+
right: 0;
|
|
69
|
+
bottom: 0;
|
|
70
|
+
top: 0;
|
|
71
|
+
}
|
|
72
72
|
}
|
|
@@ -1,90 +1,90 @@
|
|
|
1
|
-
|
|
2
|
-
.msp-layout-main {
|
|
3
|
-
position: absolute;
|
|
4
|
-
left: $expanded-left-width;
|
|
5
|
-
right: $expanded-right-width;
|
|
6
|
-
bottom: $expanded-bottom-height;
|
|
7
|
-
top: $expanded-top-height;
|
|
8
|
-
}
|
|
9
|
-
|
|
10
|
-
.msp-layout-top {
|
|
11
|
-
position: absolute;
|
|
12
|
-
left: $expanded-left-width;
|
|
13
|
-
right: $expanded-right-width;
|
|
14
|
-
height: $expanded-top-height;
|
|
15
|
-
top: 0;
|
|
16
|
-
border-bottom: 1px solid $border-color;
|
|
17
|
-
}
|
|
18
|
-
|
|
19
|
-
.msp-layout-bottom {
|
|
20
|
-
position: absolute;
|
|
21
|
-
left: $expanded-left-width;
|
|
22
|
-
right: $expanded-right-width;
|
|
23
|
-
height: $expanded-bottom-height;
|
|
24
|
-
bottom: 0;
|
|
25
|
-
border-top: 1px solid $border-color;
|
|
26
|
-
}
|
|
27
|
-
|
|
28
|
-
.msp-layout-right {
|
|
29
|
-
position: absolute;
|
|
30
|
-
width: $expanded-right-width;
|
|
31
|
-
right: 0;
|
|
32
|
-
bottom: 0;
|
|
33
|
-
top: 0;
|
|
34
|
-
border-left: 1px solid $border-color;
|
|
35
|
-
}
|
|
36
|
-
|
|
37
|
-
.msp-layout-left {
|
|
38
|
-
position: absolute;
|
|
39
|
-
width: $expanded-left-width;
|
|
40
|
-
left: 0;
|
|
41
|
-
bottom: 0;
|
|
42
|
-
top: 0;
|
|
43
|
-
border-right: 1px solid $border-color;
|
|
44
|
-
}
|
|
45
|
-
|
|
46
|
-
.msp-layout-hide-right {
|
|
47
|
-
.msp-layout-right {
|
|
48
|
-
display: none;
|
|
49
|
-
}
|
|
50
|
-
.msp-layout-main, .msp-layout-top, .msp-layout-bottom {
|
|
51
|
-
right: 0;
|
|
52
|
-
}
|
|
53
|
-
}
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
.msp-layout-hide-left {
|
|
57
|
-
.msp-layout-left {
|
|
58
|
-
display: none;
|
|
59
|
-
}
|
|
60
|
-
.msp-layout-main, .msp-layout-top, .msp-layout-bottom {
|
|
61
|
-
left: 0;
|
|
62
|
-
}
|
|
63
|
-
}
|
|
64
|
-
|
|
65
|
-
.msp-layout-collapse-left {
|
|
66
|
-
.msp-layout-left {
|
|
67
|
-
width: $collapsed-left-width;
|
|
68
|
-
}
|
|
69
|
-
.msp-layout-main, .msp-layout-top, .msp-layout-bottom {
|
|
70
|
-
left: $collapsed-left-width;
|
|
71
|
-
}
|
|
72
|
-
}
|
|
73
|
-
|
|
74
|
-
.msp-layout-hide-bottom {
|
|
75
|
-
.msp-layout-bottom {
|
|
76
|
-
display: none;
|
|
77
|
-
}
|
|
78
|
-
.msp-layout-main {
|
|
79
|
-
bottom: 0;
|
|
80
|
-
}
|
|
81
|
-
}
|
|
82
|
-
|
|
83
|
-
.msp-layout-hide-top {
|
|
84
|
-
.msp-layout-top {
|
|
85
|
-
display: none;
|
|
86
|
-
}
|
|
87
|
-
.msp-layout-main {
|
|
88
|
-
top: 0;
|
|
89
|
-
}
|
|
1
|
+
|
|
2
|
+
.msp-layout-main {
|
|
3
|
+
position: absolute;
|
|
4
|
+
left: $expanded-left-width;
|
|
5
|
+
right: $expanded-right-width;
|
|
6
|
+
bottom: $expanded-bottom-height;
|
|
7
|
+
top: $expanded-top-height;
|
|
8
|
+
}
|
|
9
|
+
|
|
10
|
+
.msp-layout-top {
|
|
11
|
+
position: absolute;
|
|
12
|
+
left: $expanded-left-width;
|
|
13
|
+
right: $expanded-right-width;
|
|
14
|
+
height: $expanded-top-height;
|
|
15
|
+
top: 0;
|
|
16
|
+
border-bottom: 1px solid $border-color;
|
|
17
|
+
}
|
|
18
|
+
|
|
19
|
+
.msp-layout-bottom {
|
|
20
|
+
position: absolute;
|
|
21
|
+
left: $expanded-left-width;
|
|
22
|
+
right: $expanded-right-width;
|
|
23
|
+
height: $expanded-bottom-height;
|
|
24
|
+
bottom: 0;
|
|
25
|
+
border-top: 1px solid $border-color;
|
|
26
|
+
}
|
|
27
|
+
|
|
28
|
+
.msp-layout-right {
|
|
29
|
+
position: absolute;
|
|
30
|
+
width: $expanded-right-width;
|
|
31
|
+
right: 0;
|
|
32
|
+
bottom: 0;
|
|
33
|
+
top: 0;
|
|
34
|
+
border-left: 1px solid $border-color;
|
|
35
|
+
}
|
|
36
|
+
|
|
37
|
+
.msp-layout-left {
|
|
38
|
+
position: absolute;
|
|
39
|
+
width: $expanded-left-width;
|
|
40
|
+
left: 0;
|
|
41
|
+
bottom: 0;
|
|
42
|
+
top: 0;
|
|
43
|
+
border-right: 1px solid $border-color;
|
|
44
|
+
}
|
|
45
|
+
|
|
46
|
+
.msp-layout-hide-right {
|
|
47
|
+
.msp-layout-right {
|
|
48
|
+
display: none;
|
|
49
|
+
}
|
|
50
|
+
.msp-layout-main, .msp-layout-top, .msp-layout-bottom {
|
|
51
|
+
right: 0;
|
|
52
|
+
}
|
|
53
|
+
}
|
|
54
|
+
|
|
55
|
+
|
|
56
|
+
.msp-layout-hide-left {
|
|
57
|
+
.msp-layout-left {
|
|
58
|
+
display: none;
|
|
59
|
+
}
|
|
60
|
+
.msp-layout-main, .msp-layout-top, .msp-layout-bottom {
|
|
61
|
+
left: 0;
|
|
62
|
+
}
|
|
63
|
+
}
|
|
64
|
+
|
|
65
|
+
.msp-layout-collapse-left {
|
|
66
|
+
.msp-layout-left {
|
|
67
|
+
width: $collapsed-left-width;
|
|
68
|
+
}
|
|
69
|
+
.msp-layout-main, .msp-layout-top, .msp-layout-bottom {
|
|
70
|
+
left: $collapsed-left-width;
|
|
71
|
+
}
|
|
72
|
+
}
|
|
73
|
+
|
|
74
|
+
.msp-layout-hide-bottom {
|
|
75
|
+
.msp-layout-bottom {
|
|
76
|
+
display: none;
|
|
77
|
+
}
|
|
78
|
+
.msp-layout-main {
|
|
79
|
+
bottom: 0;
|
|
80
|
+
}
|
|
81
|
+
}
|
|
82
|
+
|
|
83
|
+
.msp-layout-hide-top {
|
|
84
|
+
.msp-layout-top {
|
|
85
|
+
display: none;
|
|
86
|
+
}
|
|
87
|
+
.msp-layout-main {
|
|
88
|
+
top: 0;
|
|
89
|
+
}
|
|
90
90
|
}
|