molstar 2.3.2 → 2.3.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (710) hide show
  1. package/CHANGELOG.md +191 -160
  2. package/LICENSE +20 -20
  3. package/README.md +176 -176
  4. package/build/viewer/embedded.html +43 -43
  5. package/build/viewer/index.html +94 -88
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/viewer/embedded.html +43 -43
  9. package/lib/apps/viewer/index.d.ts +296 -5
  10. package/lib/apps/viewer/index.html +94 -88
  11. package/lib/apps/viewer/index.js +96 -6
  12. package/lib/apps/viewer/index.js.map +1 -1
  13. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  14. package/lib/commonjs/apps/viewer/index.d.ts +295 -4
  15. package/lib/commonjs/apps/viewer/index.js +96 -6
  16. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  17. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  18. package/lib/commonjs/cli/cif2bcif/index.js +0 -0
  19. package/lib/commonjs/cli/cifschema/index.js +0 -0
  20. package/lib/commonjs/extensions/cellpack/color/generate.d.ts +1 -1
  21. package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
  22. package/lib/commonjs/extensions/cellpack/color/provided.d.ts +1 -1
  23. package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
  24. package/lib/commonjs/extensions/cellpack/curve.d.ts +2 -2
  25. package/lib/commonjs/extensions/cellpack/curve.js +2 -2
  26. package/lib/commonjs/extensions/cellpack/data.d.ts +32 -0
  27. package/lib/commonjs/extensions/cellpack/index.d.ts +1 -1
  28. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  29. package/lib/commonjs/extensions/cellpack/model.d.ts +5 -3
  30. package/lib/commonjs/extensions/cellpack/model.js +193 -55
  31. package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
  32. package/lib/commonjs/extensions/cellpack/preset.d.ts +2 -1
  33. package/lib/commonjs/extensions/cellpack/preset.js +12 -15
  34. package/lib/commonjs/extensions/cellpack/preset.js.map +1 -1
  35. package/lib/commonjs/extensions/cellpack/property.d.ts +1 -1
  36. package/lib/commonjs/extensions/cellpack/property.js +1 -1
  37. package/lib/commonjs/extensions/cellpack/representation.d.ts +53 -0
  38. package/lib/commonjs/extensions/cellpack/representation.js +47 -0
  39. package/lib/commonjs/extensions/cellpack/representation.js.map +1 -0
  40. package/lib/commonjs/extensions/cellpack/state.d.ts +16 -5
  41. package/lib/commonjs/extensions/cellpack/state.js +233 -26
  42. package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
  43. package/lib/commonjs/extensions/cellpack/util.d.ts +3 -1
  44. package/lib/commonjs/extensions/cellpack/util.js +31 -3
  45. package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
  46. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
  47. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
  48. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  49. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
  50. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  51. package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
  52. package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
  53. package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
  54. package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
  55. package/lib/commonjs/mol-canvas3d/camera.js +21 -1
  56. package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
  57. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -4
  58. package/lib/commonjs/mol-canvas3d/canvas3d.js +8 -2
  59. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  60. package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  61. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
  62. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
  63. package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
  64. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  65. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
  66. package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
  67. package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
  68. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  69. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
  70. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  71. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  72. package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
  73. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  74. package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
  75. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
  76. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +19 -11
  77. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
  78. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
  79. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +57 -15
  80. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  81. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  82. package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
  83. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  84. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  85. package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
  86. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  87. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  88. package/lib/commonjs/mol-gl/_spec/cylinders.spec.d.ts +6 -0
  89. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js +42 -0
  90. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js.map +1 -0
  91. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
  92. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js +42 -0
  93. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js.map +1 -0
  94. package/lib/commonjs/mol-gl/_spec/gl.d.ts +9 -0
  95. package/lib/commonjs/mol-gl/_spec/gl.js +33 -0
  96. package/lib/commonjs/mol-gl/_spec/gl.js.map +1 -0
  97. package/lib/commonjs/mol-gl/_spec/gl.shim.js +1 -1
  98. package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
  99. package/lib/commonjs/mol-gl/_spec/image.spec.d.ts +6 -0
  100. package/lib/commonjs/mol-gl/_spec/image.spec.js +42 -0
  101. package/lib/commonjs/mol-gl/_spec/image.spec.js.map +1 -0
  102. package/lib/commonjs/mol-gl/_spec/lines.spec.d.ts +6 -0
  103. package/lib/commonjs/mol-gl/_spec/lines.spec.js +42 -0
  104. package/lib/commonjs/mol-gl/_spec/lines.spec.js.map +1 -0
  105. package/lib/commonjs/mol-gl/_spec/mesh.spec.d.ts +6 -0
  106. package/lib/commonjs/mol-gl/_spec/mesh.spec.js +42 -0
  107. package/lib/commonjs/mol-gl/_spec/mesh.spec.js.map +1 -0
  108. package/lib/commonjs/mol-gl/_spec/points.spec.d.ts +6 -0
  109. package/lib/commonjs/mol-gl/_spec/points.spec.js +42 -0
  110. package/lib/commonjs/mol-gl/_spec/points.spec.js.map +1 -0
  111. package/lib/commonjs/mol-gl/_spec/renderer.spec.d.ts +7 -1
  112. package/lib/commonjs/mol-gl/_spec/renderer.spec.js +6 -44
  113. package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
  114. package/lib/commonjs/mol-gl/_spec/spheres.spec.d.ts +6 -0
  115. package/lib/commonjs/mol-gl/_spec/spheres.spec.js +42 -0
  116. package/lib/commonjs/mol-gl/_spec/spheres.spec.js.map +1 -0
  117. package/lib/commonjs/mol-gl/_spec/text.spec.d.ts +6 -0
  118. package/lib/commonjs/mol-gl/_spec/text.spec.js +42 -0
  119. package/lib/commonjs/mol-gl/_spec/text.spec.js.map +1 -0
  120. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
  121. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js +42 -0
  122. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
  123. package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
  124. package/lib/commonjs/mol-gl/renderer.js +3 -0
  125. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  126. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  127. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  128. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  129. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  130. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  131. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js.map +1 -1
  132. package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
  133. package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
  134. package/lib/commonjs/mol-gl/shader/lines.vert.js.map +1 -1
  135. package/lib/commonjs/mol-gl/shader/points.vert.d.ts +1 -1
  136. package/lib/commonjs/mol-gl/shader/points.vert.js +1 -1
  137. package/lib/commonjs/mol-gl/shader/points.vert.js.map +1 -1
  138. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  139. package/lib/commonjs/mol-gl/webgl/context.js +4 -2
  140. package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
  141. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +5 -5
  142. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  143. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +3 -3
  144. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  145. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -22
  146. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  147. package/lib/commonjs/mol-math/geometry/primitives/axes3d.d.ts +2 -1
  148. package/lib/commonjs/mol-math/geometry/primitives/axes3d.js +9 -2
  149. package/lib/commonjs/mol-math/geometry/primitives/axes3d.js.map +1 -1
  150. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  151. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +11 -3
  152. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  153. package/lib/commonjs/mol-math/misc.d.ts +3 -1
  154. package/lib/commonjs/mol-math/misc.js +24 -2
  155. package/lib/commonjs/mol-math/misc.js.map +1 -1
  156. package/lib/commonjs/mol-model/loci.d.ts +32 -32
  157. package/lib/commonjs/mol-model/loci.js +4 -3
  158. package/lib/commonjs/mol-model/loci.js.map +1 -1
  159. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  160. package/lib/commonjs/mol-model/structure/structure/element/loci.d.ts +1 -0
  161. package/lib/commonjs/mol-model/structure/structure/element/loci.js +14 -0
  162. package/lib/commonjs/mol-model/structure/structure/element/loci.js.map +1 -1
  163. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -3
  164. package/lib/commonjs/mol-model/structure/structure/structure.js +2 -1
  165. package/lib/commonjs/mol-model/structure/structure/structure.js.map +1 -1
  166. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  167. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  168. package/lib/commonjs/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  169. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +6 -1
  170. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js.map +1 -1
  171. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +8 -8
  172. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
  173. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
  174. package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +1 -1
  175. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +29 -3
  176. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map +1 -1
  177. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +3 -0
  178. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +3 -0
  179. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +9 -0
  180. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +12 -0
  181. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  182. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  183. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  184. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +22 -8
  185. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  186. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +1 -1
  187. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js.map +1 -1
  188. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  189. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  190. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +5 -5
  191. package/lib/commonjs/mol-plugin/commands.d.ts +6 -2
  192. package/lib/commonjs/mol-plugin/config.d.ts +1 -0
  193. package/lib/commonjs/mol-plugin/config.js +11 -3
  194. package/lib/commonjs/mol-plugin/config.js.map +1 -1
  195. package/lib/commonjs/mol-plugin/context.js +6 -4
  196. package/lib/commonjs/mol-plugin/context.js.map +1 -1
  197. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +6 -6
  198. package/lib/commonjs/mol-plugin-state/builder/data.d.ts +3 -3
  199. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +17 -17
  200. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +9 -9
  201. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  202. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +20 -16
  203. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js.map +1 -1
  204. package/lib/commonjs/mol-plugin-state/formats/shape.d.ts +2 -2
  205. package/lib/commonjs/mol-plugin-state/formats/structure.d.ts +6 -6
  206. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +26 -26
  207. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  208. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  209. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +2 -2
  210. package/lib/commonjs/mol-plugin-state/manager/interactivity.js +12 -11
  211. package/lib/commonjs/mol-plugin-state/manager/interactivity.js.map +1 -1
  212. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.d.ts +7 -2
  213. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +111 -13
  214. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js.map +1 -1
  215. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +3 -3
  216. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +4 -10
  217. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js.map +1 -1
  218. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +6 -6
  219. package/lib/commonjs/mol-plugin-state/transforms/helpers.d.ts +3 -1
  220. package/lib/commonjs/mol-plugin-state/transforms/helpers.js +7 -4
  221. package/lib/commonjs/mol-plugin-state/transforms/helpers.js.map +1 -1
  222. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +9 -9
  223. package/lib/commonjs/mol-plugin-state/transforms/model.js.map +1 -1
  224. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +18 -3
  225. package/lib/commonjs/mol-plugin-state/transforms/representation.js +54 -2
  226. package/lib/commonjs/mol-plugin-state/transforms/representation.js.map +1 -1
  227. package/lib/commonjs/mol-plugin-ui/sequence.d.ts +1 -1
  228. package/lib/commonjs/mol-plugin-ui/sequence.js +16 -2
  229. package/lib/commonjs/mol-plugin-ui/sequence.js.map +1 -1
  230. package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +11 -2
  231. package/lib/commonjs/mol-plugin-ui/structure/measurements.js +49 -6
  232. package/lib/commonjs/mol-plugin-ui/structure/measurements.js.map +1 -1
  233. package/lib/commonjs/mol-plugin-ui/structure/selection.d.ts +1 -1
  234. package/lib/commonjs/mol-repr/representation.d.ts +1 -0
  235. package/lib/commonjs/mol-repr/representation.js +10 -4
  236. package/lib/commonjs/mol-repr/representation.js.map +1 -1
  237. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +6 -5
  238. package/lib/commonjs/mol-repr/shape/loci/orientation.js +37 -51
  239. package/lib/commonjs/mol-repr/shape/loci/orientation.js.map +1 -1
  240. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +27 -0
  241. package/lib/commonjs/mol-repr/shape/loci/plane.js +61 -0
  242. package/lib/commonjs/mol-repr/shape/loci/plane.js.map +1 -0
  243. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
  244. package/lib/commonjs/mol-repr/structure/params.d.ts +1 -1
  245. package/lib/commonjs/mol-repr/structure/registry.d.ts +34 -15
  246. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +18 -6
  247. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +9 -0
  248. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
  249. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +18 -6
  250. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  251. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  252. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +40 -19
  253. package/lib/commonjs/mol-repr/structure/representation/line.js +10 -4
  254. package/lib/commonjs/mol-repr/structure/representation/line.js.map +1 -1
  255. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  256. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
  257. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +12 -4
  258. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +20 -9
  259. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  260. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +4 -2
  261. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +13 -8
  262. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  263. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +12 -4
  264. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +21 -7
  265. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  266. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +4 -2
  267. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +14 -6
  268. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  269. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +3 -0
  270. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +3 -0
  271. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +26 -0
  272. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +77 -0
  273. package/lib/commonjs/mol-repr/structure/visual/element-cross.js.map +1 -0
  274. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  275. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  276. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  277. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +3 -0
  278. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +22 -15
  279. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js.map +1 -1
  280. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js +1 -1
  281. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js.map +1 -1
  282. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +30 -16
  283. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +2 -1
  284. package/lib/commonjs/mol-repr/structure/visual/util/bond.js.map +1 -1
  285. package/lib/commonjs/mol-repr/structure/visual/util/color.d.ts +2 -2
  286. package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +4 -4
  287. package/lib/commonjs/mol-repr/structure/visual/util/link.d.ts +14 -4
  288. package/lib/commonjs/mol-repr/structure/visual/util/link.js +90 -37
  289. package/lib/commonjs/mol-repr/structure/visual/util/link.js.map +1 -1
  290. package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  291. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +5 -5
  292. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +3 -3
  293. package/lib/commonjs/mol-repr/volume/registry.d.ts +3 -3
  294. package/lib/commonjs/mol-repr/volume/slice.d.ts +3 -3
  295. package/lib/commonjs/mol-script/language/builder.d.ts +0 -1
  296. package/lib/commonjs/mol-theme/color/atom-id.d.ts +12 -12
  297. package/lib/commonjs/mol-theme/color/chain-id.d.ts +12 -12
  298. package/lib/commonjs/mol-theme/color/element-index.d.ts +12 -12
  299. package/lib/commonjs/mol-theme/color/element-symbol.d.ts +12 -12
  300. package/lib/commonjs/mol-theme/color/entity-id.d.ts +12 -12
  301. package/lib/commonjs/mol-theme/color/entity-source.d.ts +12 -12
  302. package/lib/commonjs/mol-theme/color/illustrative.d.ts +12 -12
  303. package/lib/commonjs/mol-theme/color/model-index.d.ts +12 -12
  304. package/lib/commonjs/mol-theme/color/operator-hkl.d.ts +12 -12
  305. package/lib/commonjs/mol-theme/color/operator-name.d.ts +12 -12
  306. package/lib/commonjs/mol-theme/color/polymer-id.d.ts +12 -12
  307. package/lib/commonjs/mol-theme/color/polymer-index.d.ts +12 -12
  308. package/lib/commonjs/mol-theme/color/unit-index.d.ts +12 -12
  309. package/lib/commonjs/mol-theme/color.d.ts +78 -78
  310. package/lib/commonjs/mol-theme/label.d.ts +1 -0
  311. package/lib/commonjs/mol-theme/label.js +11 -1
  312. package/lib/commonjs/mol-theme/label.js.map +1 -1
  313. package/lib/commonjs/mol-util/color/lists.d.ts +3 -3
  314. package/lib/commonjs/mol-util/color/palette.d.ts +13 -13
  315. package/lib/commonjs/mol-util/color/scale.d.ts +1 -1
  316. package/lib/commonjs/servers/model/config.js +0 -1
  317. package/lib/commonjs/servers/model/config.js.map +1 -1
  318. package/lib/commonjs/servers/model/preprocess.js +0 -0
  319. package/lib/commonjs/servers/model/query.js +0 -0
  320. package/lib/commonjs/servers/model/server.js +0 -0
  321. package/lib/commonjs/servers/volume/config.js +0 -1
  322. package/lib/commonjs/servers/volume/config.js.map +1 -1
  323. package/lib/commonjs/servers/volume/pack.js +0 -0
  324. package/lib/commonjs/servers/volume/query.js +0 -0
  325. package/lib/commonjs/servers/volume/server.js +0 -0
  326. package/lib/examples/alpha-orbitals/index.html +60 -60
  327. package/lib/examples/basic-wrapper/index.html +136 -136
  328. package/lib/examples/lighting/index.html +86 -86
  329. package/lib/examples/proteopedia-wrapper/index.html +235 -235
  330. package/lib/extensions/cellpack/color/generate.d.ts +1 -1
  331. package/lib/extensions/cellpack/color/generate.js +1 -1
  332. package/lib/extensions/cellpack/color/provided.d.ts +1 -1
  333. package/lib/extensions/cellpack/color/provided.js +1 -1
  334. package/lib/extensions/cellpack/curve.d.ts +2 -2
  335. package/lib/extensions/cellpack/curve.js +2 -2
  336. package/lib/extensions/cellpack/data.d.ts +32 -0
  337. package/lib/extensions/cellpack/index.d.ts +1 -1
  338. package/lib/extensions/cellpack/index.js +1 -1
  339. package/lib/extensions/cellpack/model.d.ts +5 -3
  340. package/lib/extensions/cellpack/model.js +194 -56
  341. package/lib/extensions/cellpack/model.js.map +1 -1
  342. package/lib/extensions/cellpack/preset.d.ts +2 -1
  343. package/lib/extensions/cellpack/preset.js +12 -15
  344. package/lib/extensions/cellpack/preset.js.map +1 -1
  345. package/lib/extensions/cellpack/property.d.ts +1 -1
  346. package/lib/extensions/cellpack/property.js +1 -1
  347. package/lib/extensions/cellpack/representation.d.ts +53 -0
  348. package/lib/extensions/cellpack/representation.js +43 -0
  349. package/lib/extensions/cellpack/representation.js.map +1 -0
  350. package/lib/extensions/cellpack/state.d.ts +16 -5
  351. package/lib/extensions/cellpack/state.js +231 -24
  352. package/lib/extensions/cellpack/state.js.map +1 -1
  353. package/lib/extensions/cellpack/util.d.ts +3 -1
  354. package/lib/extensions/cellpack/util.js +29 -2
  355. package/lib/extensions/cellpack/util.js.map +1 -1
  356. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -4
  357. package/lib/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  358. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +2 -2
  359. package/lib/extensions/rcsb/validation-report/representation.d.ts +15 -0
  360. package/lib/extensions/rcsb/validation-report/representation.js +2 -2
  361. package/lib/mol-canvas3d/camera/util.d.ts +4 -3
  362. package/lib/mol-canvas3d/camera/util.js +15 -16
  363. package/lib/mol-canvas3d/camera/util.js.map +1 -1
  364. package/lib/mol-canvas3d/camera.d.ts +11 -3
  365. package/lib/mol-canvas3d/camera.js +22 -2
  366. package/lib/mol-canvas3d/camera.js.map +1 -1
  367. package/lib/mol-canvas3d/canvas3d.d.ts +14 -4
  368. package/lib/mol-canvas3d/canvas3d.js +9 -3
  369. package/lib/mol-canvas3d/canvas3d.js.map +1 -1
  370. package/lib/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  371. package/lib/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  372. package/lib/mol-canvas3d/helper/interaction-events.js +43 -9
  373. package/lib/mol-canvas3d/helper/interaction-events.js.map +1 -1
  374. package/lib/mol-canvas3d/passes/draw.js +1 -0
  375. package/lib/mol-canvas3d/passes/draw.js.map +1 -1
  376. package/lib/mol-canvas3d/passes/image.d.ts +2 -2
  377. package/lib/mol-canvas3d/passes/pick.d.ts +5 -2
  378. package/lib/mol-canvas3d/passes/pick.js +17 -3
  379. package/lib/mol-canvas3d/passes/pick.js.map +1 -1
  380. package/lib/mol-data/int/impl/ordered-set.d.ts +3 -3
  381. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  382. package/lib/mol-geo/geometry/direct-volume/direct-volume.js +12 -3
  383. package/lib/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  384. package/lib/mol-geo/geometry/image/image.d.ts +2 -2
  385. package/lib/mol-geo/geometry/image/image.js +5 -2
  386. package/lib/mol-geo/geometry/image/image.js.map +1 -1
  387. package/lib/mol-geo/geometry/lines/lines.js +1 -1
  388. package/lib/mol-geo/geometry/lines/lines.js.map +1 -1
  389. package/lib/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
  390. package/lib/mol-geo/geometry/mesh/builder/sheet.js +19 -11
  391. package/lib/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
  392. package/lib/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
  393. package/lib/mol-geo/geometry/mesh/builder/tube.js +57 -15
  394. package/lib/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  395. package/lib/mol-geo/geometry/points/points.js +1 -1
  396. package/lib/mol-geo/geometry/points/points.js.map +1 -1
  397. package/lib/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  398. package/lib/mol-geo/geometry/text/text.js +1 -1
  399. package/lib/mol-geo/geometry/text/text.js.map +1 -1
  400. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  401. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  402. package/lib/mol-gl/_spec/cylinders.spec.d.ts +6 -0
  403. package/lib/mol-gl/_spec/cylinders.spec.js +38 -0
  404. package/lib/mol-gl/_spec/cylinders.spec.js.map +1 -0
  405. package/lib/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
  406. package/lib/mol-gl/_spec/direct-volume.spec.js +38 -0
  407. package/lib/mol-gl/_spec/direct-volume.spec.js.map +1 -0
  408. package/lib/mol-gl/_spec/gl.d.ts +9 -0
  409. package/lib/mol-gl/_spec/gl.js +28 -0
  410. package/lib/mol-gl/_spec/gl.js.map +1 -0
  411. package/lib/mol-gl/_spec/gl.shim.js +1 -1
  412. package/lib/mol-gl/_spec/gl.shim.js.map +1 -1
  413. package/lib/mol-gl/_spec/image.spec.d.ts +6 -0
  414. package/lib/mol-gl/_spec/image.spec.js +38 -0
  415. package/lib/mol-gl/_spec/image.spec.js.map +1 -0
  416. package/lib/mol-gl/_spec/lines.spec.d.ts +6 -0
  417. package/lib/mol-gl/_spec/lines.spec.js +38 -0
  418. package/lib/mol-gl/_spec/lines.spec.js.map +1 -0
  419. package/lib/mol-gl/_spec/mesh.spec.d.ts +6 -0
  420. package/lib/mol-gl/_spec/mesh.spec.js +38 -0
  421. package/lib/mol-gl/_spec/mesh.spec.js.map +1 -0
  422. package/lib/mol-gl/_spec/points.spec.d.ts +6 -0
  423. package/lib/mol-gl/_spec/points.spec.js +38 -0
  424. package/lib/mol-gl/_spec/points.spec.js.map +1 -0
  425. package/lib/mol-gl/_spec/renderer.spec.d.ts +7 -1
  426. package/lib/mol-gl/_spec/renderer.spec.js +6 -46
  427. package/lib/mol-gl/_spec/renderer.spec.js.map +1 -1
  428. package/lib/{commonjs/mol-repr/structure/visual/aromatic-ring-mesh.d.ts → mol-gl/_spec/shader.spec.d.ts} +0 -0
  429. package/lib/mol-gl/_spec/shader.spec.js +2 -0
  430. package/lib/mol-gl/_spec/shader.spec.js.map +1 -0
  431. package/lib/mol-gl/_spec/spheres.spec.d.ts +6 -0
  432. package/lib/mol-gl/_spec/spheres.spec.js +38 -0
  433. package/lib/mol-gl/_spec/spheres.spec.js.map +1 -0
  434. package/lib/mol-gl/_spec/text.spec.d.ts +6 -0
  435. package/lib/mol-gl/_spec/text.spec.js +38 -0
  436. package/lib/mol-gl/_spec/text.spec.js.map +1 -0
  437. package/lib/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
  438. package/lib/mol-gl/_spec/texture-mesh.spec.js +38 -0
  439. package/lib/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
  440. package/lib/mol-gl/renderer.d.ts +3 -2
  441. package/lib/mol-gl/renderer.js +3 -0
  442. package/lib/mol-gl/renderer.js.map +1 -1
  443. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  444. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  445. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  446. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  447. package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
  448. package/lib/mol-gl/shader/direct-volume.frag.js.map +1 -1
  449. package/lib/mol-gl/shader/lines.vert.d.ts +1 -1
  450. package/lib/mol-gl/shader/lines.vert.js +1 -1
  451. package/lib/mol-gl/shader/lines.vert.js.map +1 -1
  452. package/lib/mol-gl/shader/points.vert.d.ts +1 -1
  453. package/lib/mol-gl/shader/points.vert.js +1 -1
  454. package/lib/mol-gl/shader/points.vert.js.map +1 -1
  455. package/lib/mol-gl/webgl/context.d.ts +1 -1
  456. package/lib/mol-gl/webgl/context.js +4 -2
  457. package/lib/mol-gl/webgl/context.js.map +1 -1
  458. package/lib/mol-io/reader/cif/schema/bird.d.ts +5 -5
  459. package/lib/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  460. package/lib/mol-io/reader/cif/schema/density-server.d.ts +4 -4
  461. package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  462. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +23 -23
  463. package/lib/mol-io/reader/ply/schema.d.ts +1 -1
  464. package/lib/mol-math/geometry/primitives/axes3d.d.ts +2 -1
  465. package/lib/mol-math/geometry/primitives/axes3d.js +9 -2
  466. package/lib/mol-math/geometry/primitives/axes3d.js.map +1 -1
  467. package/lib/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  468. package/lib/mol-math/linear-algebra/3d/vec3.js +11 -3
  469. package/lib/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  470. package/lib/mol-math/misc.d.ts +3 -1
  471. package/lib/mol-math/misc.js +22 -1
  472. package/lib/mol-math/misc.js.map +1 -1
  473. package/lib/mol-model/loci.d.ts +32 -32
  474. package/lib/mol-model/loci.js +4 -3
  475. package/lib/mol-model/loci.js.map +1 -1
  476. package/lib/mol-model/shape/shape.d.ts +1 -1
  477. package/lib/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  478. package/lib/mol-model/structure/structure/element/loci.d.ts +1 -0
  479. package/lib/mol-model/structure/structure/element/loci.js +14 -0
  480. package/lib/mol-model/structure/structure/element/loci.js.map +1 -1
  481. package/lib/mol-model/structure/structure/properties.d.ts +3 -3
  482. package/lib/mol-model/structure/structure/structure.js +2 -1
  483. package/lib/mol-model/structure/structure/structure.js.map +1 -1
  484. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  485. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  486. package/lib/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  487. package/lib/mol-model/structure/structure/unit/bonds.js +7 -2
  488. package/lib/mol-model/structure/structure/unit/bonds.js.map +1 -1
  489. package/lib/mol-model/structure/structure/unit.d.ts +2 -2
  490. package/lib/mol-model-formats/shape/ply.d.ts +12 -12
  491. package/lib/mol-model-formats/structure/basic/schema.d.ts +6 -6
  492. package/lib/mol-model-formats/structure/common/component.d.ts +8 -8
  493. package/lib/mol-model-formats/structure/common/entity.d.ts +1 -1
  494. package/lib/mol-model-formats/structure/pdb/entity.js +29 -3
  495. package/lib/mol-model-formats/structure/pdb/entity.js.map +1 -1
  496. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +3 -0
  497. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +3 -0
  498. package/lib/mol-model-props/computed/representations/interactions.d.ts +9 -0
  499. package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +12 -0
  500. package/lib/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  501. package/lib/mol-plugin/behavior/behavior.d.ts +1 -1
  502. package/lib/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  503. package/lib/mol-plugin/behavior/dynamic/representation.js +23 -9
  504. package/lib/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  505. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +1 -1
  506. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js.map +1 -1
  507. package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  508. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  509. package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +7 -7
  510. package/lib/mol-plugin/commands.d.ts +6 -2
  511. package/lib/mol-plugin/config.d.ts +1 -0
  512. package/lib/mol-plugin/config.js +11 -3
  513. package/lib/mol-plugin/config.js.map +1 -1
  514. package/lib/mol-plugin/context.js +6 -4
  515. package/lib/mol-plugin/context.js.map +1 -1
  516. package/lib/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  517. package/lib/mol-plugin/version.js +2 -2
  518. package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  519. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +7 -7
  520. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +7 -7
  521. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  522. package/lib/mol-plugin-state/builder/structure/representation-preset.js +20 -16
  523. package/lib/mol-plugin-state/builder/structure/representation-preset.js.map +1 -1
  524. package/lib/mol-plugin-state/formats/volume.d.ts +16 -16
  525. package/lib/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  526. package/lib/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  527. package/lib/mol-plugin-state/manager/interactivity.d.ts +2 -2
  528. package/lib/mol-plugin-state/manager/interactivity.js +12 -11
  529. package/lib/mol-plugin-state/manager/interactivity.js.map +1 -1
  530. package/lib/mol-plugin-state/manager/structure/measurement.d.ts +7 -2
  531. package/lib/mol-plugin-state/manager/structure/measurement.js +110 -12
  532. package/lib/mol-plugin-state/manager/structure/measurement.js.map +1 -1
  533. package/lib/mol-plugin-state/manager/structure/selection.d.ts +3 -3
  534. package/lib/mol-plugin-state/manager/structure/selection.js +4 -10
  535. package/lib/mol-plugin-state/manager/structure/selection.js.map +1 -1
  536. package/lib/mol-plugin-state/transforms/data.d.ts +1 -1
  537. package/lib/mol-plugin-state/transforms/helpers.d.ts +3 -1
  538. package/lib/mol-plugin-state/transforms/helpers.js +5 -3
  539. package/lib/mol-plugin-state/transforms/helpers.js.map +1 -1
  540. package/lib/mol-plugin-state/transforms/model.d.ts +9 -9
  541. package/lib/mol-plugin-state/transforms/model.js.map +1 -1
  542. package/lib/mol-plugin-state/transforms/representation.d.ts +19 -4
  543. package/lib/mol-plugin-state/transforms/representation.js +54 -2
  544. package/lib/mol-plugin-state/transforms/representation.js.map +1 -1
  545. package/lib/mol-plugin-ui/sequence/polymer.d.ts +1 -1
  546. package/lib/mol-plugin-ui/sequence.d.ts +1 -1
  547. package/lib/mol-plugin-ui/sequence.js +16 -2
  548. package/lib/mol-plugin-ui/sequence.js.map +1 -1
  549. package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
  550. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  551. package/lib/mol-plugin-ui/skin/base/components/controls.scss +420 -420
  552. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  553. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  554. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  555. package/lib/mol-plugin-ui/skin/base/components/misc.scss +616 -616
  556. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  557. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  558. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  559. package/lib/mol-plugin-ui/skin/base/components/toast.scss +81 -81
  560. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  561. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +127 -127
  562. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  563. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  564. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  565. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  566. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  567. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  568. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  569. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  570. package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
  571. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  572. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  573. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  574. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  575. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  576. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  577. package/lib/mol-plugin-ui/structure/measurements.d.ts +10 -1
  578. package/lib/mol-plugin-ui/structure/measurements.js +50 -7
  579. package/lib/mol-plugin-ui/structure/measurements.js.map +1 -1
  580. package/lib/mol-repr/representation.d.ts +1 -0
  581. package/lib/mol-repr/representation.js +8 -2
  582. package/lib/mol-repr/representation.js.map +1 -1
  583. package/lib/mol-repr/shape/loci/orientation.d.ts +6 -5
  584. package/lib/mol-repr/shape/loci/orientation.js +38 -52
  585. package/lib/mol-repr/shape/loci/orientation.js.map +1 -1
  586. package/lib/mol-repr/shape/loci/plane.d.ts +27 -0
  587. package/lib/mol-repr/shape/loci/plane.js +57 -0
  588. package/lib/mol-repr/shape/loci/plane.js.map +1 -0
  589. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
  590. package/lib/mol-repr/structure/complex-visual.d.ts +1 -1
  591. package/lib/mol-repr/structure/params.d.ts +1 -1
  592. package/lib/mol-repr/structure/registry.d.ts +30 -11
  593. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +12 -0
  594. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +9 -0
  595. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  596. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +12 -0
  597. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  598. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  599. package/lib/mol-repr/structure/representation/label.d.ts +3 -3
  600. package/lib/mol-repr/structure/representation/line.d.ts +37 -16
  601. package/lib/mol-repr/structure/representation/line.js +10 -4
  602. package/lib/mol-repr/structure/representation/line.js.map +1 -1
  603. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  604. package/lib/mol-repr/structure/units-visual.d.ts +1 -1
  605. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +8 -0
  606. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +20 -9
  607. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  608. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +2 -0
  609. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js +13 -8
  610. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  611. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +8 -0
  612. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +21 -7
  613. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  614. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +2 -0
  615. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +14 -6
  616. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  617. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +3 -0
  618. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +3 -0
  619. package/lib/mol-repr/structure/visual/element-cross.d.ts +26 -0
  620. package/lib/mol-repr/structure/visual/element-cross.js +72 -0
  621. package/lib/mol-repr/structure/visual/element-cross.js.map +1 -0
  622. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  623. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  624. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -1
  625. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  626. package/lib/mol-repr/structure/visual/orientation-axes-mesh.d.ts +35 -0
  627. package/lib/mol-repr/structure/visual/orientation-axes-mesh.js +43 -0
  628. package/lib/mol-repr/structure/visual/orientation-axes-mesh.js.map +1 -0
  629. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.d.ts +31 -0
  630. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js +48 -0
  631. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js.map +1 -0
  632. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +3 -0
  633. package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +22 -15
  634. package/lib/mol-repr/structure/visual/polymer-trace-mesh.js.map +1 -1
  635. package/lib/mol-repr/structure/visual/polymer-tube-mesh.js +1 -1
  636. package/lib/mol-repr/structure/visual/polymer-tube-mesh.js.map +1 -1
  637. package/lib/mol-repr/structure/visual/util/bond.d.ts +18 -4
  638. package/lib/mol-repr/structure/visual/util/bond.js +2 -1
  639. package/lib/mol-repr/structure/visual/util/bond.js.map +1 -1
  640. package/lib/mol-repr/structure/visual/util/color.d.ts +2 -2
  641. package/lib/mol-repr/structure/visual/util/element.d.ts +4 -4
  642. package/lib/mol-repr/structure/visual/util/link.d.ts +14 -4
  643. package/lib/mol-repr/structure/visual/util/link.js +90 -37
  644. package/lib/mol-repr/structure/visual/util/link.js.map +1 -1
  645. package/lib/mol-repr/structure/visual/util/orientation.d.ts +17 -0
  646. package/lib/mol-repr/structure/visual/util/orientation.js +71 -0
  647. package/lib/mol-repr/structure/visual/util/orientation.js.map +1 -0
  648. package/lib/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  649. package/lib/mol-repr/volume/direct-volume.d.ts +5 -5
  650. package/lib/mol-repr/volume/registry.d.ts +3 -3
  651. package/lib/mol-repr/volume/slice.d.ts +6 -6
  652. package/lib/mol-script/language/builder.d.ts +0 -1
  653. package/lib/mol-task/util/scheduler.d.ts +0 -1
  654. package/lib/mol-theme/color/atom-id.d.ts +12 -12
  655. package/lib/mol-theme/color/chain-id.d.ts +12 -12
  656. package/lib/mol-theme/color/element-index.d.ts +12 -12
  657. package/lib/mol-theme/color/element-symbol.d.ts +12 -12
  658. package/lib/mol-theme/color/entity-id.d.ts +12 -12
  659. package/lib/mol-theme/color/entity-source.d.ts +12 -12
  660. package/lib/mol-theme/color/illustrative.d.ts +12 -12
  661. package/lib/mol-theme/color/model-index.d.ts +12 -12
  662. package/lib/mol-theme/color/operator-hkl.d.ts +12 -12
  663. package/lib/mol-theme/color/operator-name.d.ts +12 -12
  664. package/lib/mol-theme/color/polymer-id.d.ts +12 -12
  665. package/lib/mol-theme/color/polymer-index.d.ts +12 -12
  666. package/lib/mol-theme/color/unit-index.d.ts +12 -12
  667. package/lib/mol-theme/color.d.ts +78 -78
  668. package/lib/mol-theme/label.d.ts +1 -0
  669. package/lib/mol-theme/label.js +9 -0
  670. package/lib/mol-theme/label.js.map +1 -1
  671. package/lib/mol-util/color/palette.d.ts +12 -12
  672. package/lib/servers/model/config.js +0 -1
  673. package/lib/servers/model/config.js.map +1 -1
  674. package/lib/servers/volume/config.js +0 -1
  675. package/lib/servers/volume/config.js.map +1 -1
  676. package/lib/tests/browser/index.html +36 -36
  677. package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
  678. package/package.json +159 -155
  679. package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.d.ts +0 -1
  680. package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js +0 -5
  681. package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js.map +0 -1
  682. package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.d.ts +0 -6
  683. package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js +0 -40
  684. package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js.map +0 -1
  685. package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js +0 -3
  686. package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js.map +0 -1
  687. package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts +0 -37
  688. package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.js +0 -116
  689. package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.js.map +0 -1
  690. package/lib/commonjs/mol-script/util/residue-list.d.ts +0 -7
  691. package/lib/commonjs/mol-script/util/residue-list.js +0 -63
  692. package/lib/commonjs/mol-script/util/residue-list.js.map +0 -1
  693. package/lib/mol-gl/shader/chunks/wboit-params.glsl.d.ts +0 -1
  694. package/lib/mol-gl/shader/chunks/wboit-params.glsl.js +0 -2
  695. package/lib/mol-gl/shader/chunks/wboit-params.glsl.js.map +0 -1
  696. package/lib/mol-model/structure/model/properties/utils/guess-element.d.ts +0 -6
  697. package/lib/mol-model/structure/model/properties/utils/guess-element.js +0 -36
  698. package/lib/mol-model/structure/model/properties/utils/guess-element.js.map +0 -1
  699. package/lib/mol-model-formats/structure/mol copy.d.ts +0 -17
  700. package/lib/mol-model-formats/structure/mol copy.js +0 -86
  701. package/lib/mol-model-formats/structure/mol copy.js.map +0 -1
  702. package/lib/mol-repr/structure/visual/aromatic-ring-mesh.d.ts +0 -0
  703. package/lib/mol-repr/structure/visual/aromatic-ring-mesh.js +0 -3
  704. package/lib/mol-repr/structure/visual/aromatic-ring-mesh.js.map +0 -1
  705. package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts +0 -37
  706. package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.js +0 -112
  707. package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.js.map +0 -1
  708. package/lib/mol-script/util/residue-list.d.ts +0 -7
  709. package/lib/mol-script/util/residue-list.js +0 -59
  710. package/lib/mol-script/util/residue-list.js.map +0 -1

There are too many changes on this page to be displayed.


The amount of changes on this page would crash your brower.

You can still verify the content by downloading the package file manually.