molstar 2.3.2 → 2.3.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (710) hide show
  1. package/CHANGELOG.md +191 -160
  2. package/LICENSE +20 -20
  3. package/README.md +176 -176
  4. package/build/viewer/embedded.html +43 -43
  5. package/build/viewer/index.html +94 -88
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/viewer/embedded.html +43 -43
  9. package/lib/apps/viewer/index.d.ts +296 -5
  10. package/lib/apps/viewer/index.html +94 -88
  11. package/lib/apps/viewer/index.js +96 -6
  12. package/lib/apps/viewer/index.js.map +1 -1
  13. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  14. package/lib/commonjs/apps/viewer/index.d.ts +295 -4
  15. package/lib/commonjs/apps/viewer/index.js +96 -6
  16. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  17. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  18. package/lib/commonjs/cli/cif2bcif/index.js +0 -0
  19. package/lib/commonjs/cli/cifschema/index.js +0 -0
  20. package/lib/commonjs/extensions/cellpack/color/generate.d.ts +1 -1
  21. package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
  22. package/lib/commonjs/extensions/cellpack/color/provided.d.ts +1 -1
  23. package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
  24. package/lib/commonjs/extensions/cellpack/curve.d.ts +2 -2
  25. package/lib/commonjs/extensions/cellpack/curve.js +2 -2
  26. package/lib/commonjs/extensions/cellpack/data.d.ts +32 -0
  27. package/lib/commonjs/extensions/cellpack/index.d.ts +1 -1
  28. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  29. package/lib/commonjs/extensions/cellpack/model.d.ts +5 -3
  30. package/lib/commonjs/extensions/cellpack/model.js +193 -55
  31. package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
  32. package/lib/commonjs/extensions/cellpack/preset.d.ts +2 -1
  33. package/lib/commonjs/extensions/cellpack/preset.js +12 -15
  34. package/lib/commonjs/extensions/cellpack/preset.js.map +1 -1
  35. package/lib/commonjs/extensions/cellpack/property.d.ts +1 -1
  36. package/lib/commonjs/extensions/cellpack/property.js +1 -1
  37. package/lib/commonjs/extensions/cellpack/representation.d.ts +53 -0
  38. package/lib/commonjs/extensions/cellpack/representation.js +47 -0
  39. package/lib/commonjs/extensions/cellpack/representation.js.map +1 -0
  40. package/lib/commonjs/extensions/cellpack/state.d.ts +16 -5
  41. package/lib/commonjs/extensions/cellpack/state.js +233 -26
  42. package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
  43. package/lib/commonjs/extensions/cellpack/util.d.ts +3 -1
  44. package/lib/commonjs/extensions/cellpack/util.js +31 -3
  45. package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
  46. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
  47. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
  48. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  49. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
  50. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  51. package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
  52. package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
  53. package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
  54. package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
  55. package/lib/commonjs/mol-canvas3d/camera.js +21 -1
  56. package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
  57. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -4
  58. package/lib/commonjs/mol-canvas3d/canvas3d.js +8 -2
  59. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  60. package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  61. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
  62. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
  63. package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
  64. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  65. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
  66. package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
  67. package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
  68. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  69. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
  70. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  71. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  72. package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
  73. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  74. package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
  75. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
  76. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +19 -11
  77. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
  78. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
  79. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +57 -15
  80. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  81. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  82. package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
  83. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  84. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  85. package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
  86. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  87. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  88. package/lib/commonjs/mol-gl/_spec/cylinders.spec.d.ts +6 -0
  89. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js +42 -0
  90. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js.map +1 -0
  91. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
  92. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js +42 -0
  93. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js.map +1 -0
  94. package/lib/commonjs/mol-gl/_spec/gl.d.ts +9 -0
  95. package/lib/commonjs/mol-gl/_spec/gl.js +33 -0
  96. package/lib/commonjs/mol-gl/_spec/gl.js.map +1 -0
  97. package/lib/commonjs/mol-gl/_spec/gl.shim.js +1 -1
  98. package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
  99. package/lib/commonjs/mol-gl/_spec/image.spec.d.ts +6 -0
  100. package/lib/commonjs/mol-gl/_spec/image.spec.js +42 -0
  101. package/lib/commonjs/mol-gl/_spec/image.spec.js.map +1 -0
  102. package/lib/commonjs/mol-gl/_spec/lines.spec.d.ts +6 -0
  103. package/lib/commonjs/mol-gl/_spec/lines.spec.js +42 -0
  104. package/lib/commonjs/mol-gl/_spec/lines.spec.js.map +1 -0
  105. package/lib/commonjs/mol-gl/_spec/mesh.spec.d.ts +6 -0
  106. package/lib/commonjs/mol-gl/_spec/mesh.spec.js +42 -0
  107. package/lib/commonjs/mol-gl/_spec/mesh.spec.js.map +1 -0
  108. package/lib/commonjs/mol-gl/_spec/points.spec.d.ts +6 -0
  109. package/lib/commonjs/mol-gl/_spec/points.spec.js +42 -0
  110. package/lib/commonjs/mol-gl/_spec/points.spec.js.map +1 -0
  111. package/lib/commonjs/mol-gl/_spec/renderer.spec.d.ts +7 -1
  112. package/lib/commonjs/mol-gl/_spec/renderer.spec.js +6 -44
  113. package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
  114. package/lib/commonjs/mol-gl/_spec/spheres.spec.d.ts +6 -0
  115. package/lib/commonjs/mol-gl/_spec/spheres.spec.js +42 -0
  116. package/lib/commonjs/mol-gl/_spec/spheres.spec.js.map +1 -0
  117. package/lib/commonjs/mol-gl/_spec/text.spec.d.ts +6 -0
  118. package/lib/commonjs/mol-gl/_spec/text.spec.js +42 -0
  119. package/lib/commonjs/mol-gl/_spec/text.spec.js.map +1 -0
  120. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
  121. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js +42 -0
  122. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
  123. package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
  124. package/lib/commonjs/mol-gl/renderer.js +3 -0
  125. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  126. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  127. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  128. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  129. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  130. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  131. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js.map +1 -1
  132. package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
  133. package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
  134. package/lib/commonjs/mol-gl/shader/lines.vert.js.map +1 -1
  135. package/lib/commonjs/mol-gl/shader/points.vert.d.ts +1 -1
  136. package/lib/commonjs/mol-gl/shader/points.vert.js +1 -1
  137. package/lib/commonjs/mol-gl/shader/points.vert.js.map +1 -1
  138. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  139. package/lib/commonjs/mol-gl/webgl/context.js +4 -2
  140. package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
  141. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +5 -5
  142. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  143. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +3 -3
  144. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  145. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -22
  146. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  147. package/lib/commonjs/mol-math/geometry/primitives/axes3d.d.ts +2 -1
  148. package/lib/commonjs/mol-math/geometry/primitives/axes3d.js +9 -2
  149. package/lib/commonjs/mol-math/geometry/primitives/axes3d.js.map +1 -1
  150. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  151. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +11 -3
  152. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  153. package/lib/commonjs/mol-math/misc.d.ts +3 -1
  154. package/lib/commonjs/mol-math/misc.js +24 -2
  155. package/lib/commonjs/mol-math/misc.js.map +1 -1
  156. package/lib/commonjs/mol-model/loci.d.ts +32 -32
  157. package/lib/commonjs/mol-model/loci.js +4 -3
  158. package/lib/commonjs/mol-model/loci.js.map +1 -1
  159. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  160. package/lib/commonjs/mol-model/structure/structure/element/loci.d.ts +1 -0
  161. package/lib/commonjs/mol-model/structure/structure/element/loci.js +14 -0
  162. package/lib/commonjs/mol-model/structure/structure/element/loci.js.map +1 -1
  163. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -3
  164. package/lib/commonjs/mol-model/structure/structure/structure.js +2 -1
  165. package/lib/commonjs/mol-model/structure/structure/structure.js.map +1 -1
  166. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  167. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  168. package/lib/commonjs/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  169. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +6 -1
  170. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js.map +1 -1
  171. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +8 -8
  172. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
  173. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
  174. package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +1 -1
  175. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +29 -3
  176. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map +1 -1
  177. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +3 -0
  178. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +3 -0
  179. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +9 -0
  180. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +12 -0
  181. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  182. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  183. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  184. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +22 -8
  185. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  186. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +1 -1
  187. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js.map +1 -1
  188. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  189. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  190. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +5 -5
  191. package/lib/commonjs/mol-plugin/commands.d.ts +6 -2
  192. package/lib/commonjs/mol-plugin/config.d.ts +1 -0
  193. package/lib/commonjs/mol-plugin/config.js +11 -3
  194. package/lib/commonjs/mol-plugin/config.js.map +1 -1
  195. package/lib/commonjs/mol-plugin/context.js +6 -4
  196. package/lib/commonjs/mol-plugin/context.js.map +1 -1
  197. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +6 -6
  198. package/lib/commonjs/mol-plugin-state/builder/data.d.ts +3 -3
  199. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +17 -17
  200. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +9 -9
  201. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  202. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +20 -16
  203. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js.map +1 -1
  204. package/lib/commonjs/mol-plugin-state/formats/shape.d.ts +2 -2
  205. package/lib/commonjs/mol-plugin-state/formats/structure.d.ts +6 -6
  206. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +26 -26
  207. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  208. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  209. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +2 -2
  210. package/lib/commonjs/mol-plugin-state/manager/interactivity.js +12 -11
  211. package/lib/commonjs/mol-plugin-state/manager/interactivity.js.map +1 -1
  212. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.d.ts +7 -2
  213. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +111 -13
  214. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js.map +1 -1
  215. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +3 -3
  216. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +4 -10
  217. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js.map +1 -1
  218. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +6 -6
  219. package/lib/commonjs/mol-plugin-state/transforms/helpers.d.ts +3 -1
  220. package/lib/commonjs/mol-plugin-state/transforms/helpers.js +7 -4
  221. package/lib/commonjs/mol-plugin-state/transforms/helpers.js.map +1 -1
  222. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +9 -9
  223. package/lib/commonjs/mol-plugin-state/transforms/model.js.map +1 -1
  224. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +18 -3
  225. package/lib/commonjs/mol-plugin-state/transforms/representation.js +54 -2
  226. package/lib/commonjs/mol-plugin-state/transforms/representation.js.map +1 -1
  227. package/lib/commonjs/mol-plugin-ui/sequence.d.ts +1 -1
  228. package/lib/commonjs/mol-plugin-ui/sequence.js +16 -2
  229. package/lib/commonjs/mol-plugin-ui/sequence.js.map +1 -1
  230. package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +11 -2
  231. package/lib/commonjs/mol-plugin-ui/structure/measurements.js +49 -6
  232. package/lib/commonjs/mol-plugin-ui/structure/measurements.js.map +1 -1
  233. package/lib/commonjs/mol-plugin-ui/structure/selection.d.ts +1 -1
  234. package/lib/commonjs/mol-repr/representation.d.ts +1 -0
  235. package/lib/commonjs/mol-repr/representation.js +10 -4
  236. package/lib/commonjs/mol-repr/representation.js.map +1 -1
  237. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +6 -5
  238. package/lib/commonjs/mol-repr/shape/loci/orientation.js +37 -51
  239. package/lib/commonjs/mol-repr/shape/loci/orientation.js.map +1 -1
  240. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +27 -0
  241. package/lib/commonjs/mol-repr/shape/loci/plane.js +61 -0
  242. package/lib/commonjs/mol-repr/shape/loci/plane.js.map +1 -0
  243. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
  244. package/lib/commonjs/mol-repr/structure/params.d.ts +1 -1
  245. package/lib/commonjs/mol-repr/structure/registry.d.ts +34 -15
  246. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +18 -6
  247. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +9 -0
  248. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
  249. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +18 -6
  250. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  251. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  252. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +40 -19
  253. package/lib/commonjs/mol-repr/structure/representation/line.js +10 -4
  254. package/lib/commonjs/mol-repr/structure/representation/line.js.map +1 -1
  255. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  256. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
  257. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +12 -4
  258. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +20 -9
  259. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  260. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +4 -2
  261. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +13 -8
  262. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  263. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +12 -4
  264. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +21 -7
  265. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  266. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +4 -2
  267. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +14 -6
  268. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  269. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +3 -0
  270. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +3 -0
  271. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +26 -0
  272. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +77 -0
  273. package/lib/commonjs/mol-repr/structure/visual/element-cross.js.map +1 -0
  274. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  275. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
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  578. package/lib/mol-plugin-ui/structure/measurements.js +50 -7
  579. package/lib/mol-plugin-ui/structure/measurements.js.map +1 -1
  580. package/lib/mol-repr/representation.d.ts +1 -0
  581. package/lib/mol-repr/representation.js +8 -2
  582. package/lib/mol-repr/representation.js.map +1 -1
  583. package/lib/mol-repr/shape/loci/orientation.d.ts +6 -5
  584. package/lib/mol-repr/shape/loci/orientation.js +38 -52
  585. package/lib/mol-repr/shape/loci/orientation.js.map +1 -1
  586. package/lib/mol-repr/shape/loci/plane.d.ts +27 -0
  587. package/lib/mol-repr/shape/loci/plane.js +57 -0
  588. package/lib/mol-repr/shape/loci/plane.js.map +1 -0
  589. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
  590. package/lib/mol-repr/structure/complex-visual.d.ts +1 -1
  591. package/lib/mol-repr/structure/params.d.ts +1 -1
  592. package/lib/mol-repr/structure/registry.d.ts +30 -11
  593. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +12 -0
  594. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +9 -0
  595. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  596. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +12 -0
  597. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  598. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  599. package/lib/mol-repr/structure/representation/label.d.ts +3 -3
  600. package/lib/mol-repr/structure/representation/line.d.ts +37 -16
  601. package/lib/mol-repr/structure/representation/line.js +10 -4
  602. package/lib/mol-repr/structure/representation/line.js.map +1 -1
  603. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  604. package/lib/mol-repr/structure/units-visual.d.ts +1 -1
  605. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +8 -0
  606. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +20 -9
  607. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  608. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +2 -0
  609. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js +13 -8
  610. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  611. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +8 -0
  612. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +21 -7
  613. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  614. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +2 -0
  615. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +14 -6
  616. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  617. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +3 -0
  618. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +3 -0
  619. package/lib/mol-repr/structure/visual/element-cross.d.ts +26 -0
  620. package/lib/mol-repr/structure/visual/element-cross.js +72 -0
  621. package/lib/mol-repr/structure/visual/element-cross.js.map +1 -0
  622. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  623. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
  624. package/lib/mol-repr/structure/visual/label-text.d.ts +1 -1
  625. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +2 -2
  626. package/lib/mol-repr/structure/visual/orientation-axes-mesh.d.ts +35 -0
  627. package/lib/mol-repr/structure/visual/orientation-axes-mesh.js +43 -0
  628. package/lib/mol-repr/structure/visual/orientation-axes-mesh.js.map +1 -0
  629. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.d.ts +31 -0
  630. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js +48 -0
  631. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh copy.js.map +1 -0
  632. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +3 -0
  633. package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +22 -15
  634. package/lib/mol-repr/structure/visual/polymer-trace-mesh.js.map +1 -1
  635. package/lib/mol-repr/structure/visual/polymer-tube-mesh.js +1 -1
  636. package/lib/mol-repr/structure/visual/polymer-tube-mesh.js.map +1 -1
  637. package/lib/mol-repr/structure/visual/util/bond.d.ts +18 -4
  638. package/lib/mol-repr/structure/visual/util/bond.js +2 -1
  639. package/lib/mol-repr/structure/visual/util/bond.js.map +1 -1
  640. package/lib/mol-repr/structure/visual/util/color.d.ts +2 -2
  641. package/lib/mol-repr/structure/visual/util/element.d.ts +4 -4
  642. package/lib/mol-repr/structure/visual/util/link.d.ts +14 -4
  643. package/lib/mol-repr/structure/visual/util/link.js +90 -37
  644. package/lib/mol-repr/structure/visual/util/link.js.map +1 -1
  645. package/lib/mol-repr/structure/visual/util/orientation.d.ts +17 -0
  646. package/lib/mol-repr/structure/visual/util/orientation.js +71 -0
  647. package/lib/mol-repr/structure/visual/util/orientation.js.map +1 -0
  648. package/lib/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  649. package/lib/mol-repr/volume/direct-volume.d.ts +5 -5
  650. package/lib/mol-repr/volume/registry.d.ts +3 -3
  651. package/lib/mol-repr/volume/slice.d.ts +6 -6
  652. package/lib/mol-script/language/builder.d.ts +0 -1
  653. package/lib/mol-task/util/scheduler.d.ts +0 -1
  654. package/lib/mol-theme/color/atom-id.d.ts +12 -12
  655. package/lib/mol-theme/color/chain-id.d.ts +12 -12
  656. package/lib/mol-theme/color/element-index.d.ts +12 -12
  657. package/lib/mol-theme/color/element-symbol.d.ts +12 -12
  658. package/lib/mol-theme/color/entity-id.d.ts +12 -12
  659. package/lib/mol-theme/color/entity-source.d.ts +12 -12
  660. package/lib/mol-theme/color/illustrative.d.ts +12 -12
  661. package/lib/mol-theme/color/model-index.d.ts +12 -12
  662. package/lib/mol-theme/color/operator-hkl.d.ts +12 -12
  663. package/lib/mol-theme/color/operator-name.d.ts +12 -12
  664. package/lib/mol-theme/color/polymer-id.d.ts +12 -12
  665. package/lib/mol-theme/color/polymer-index.d.ts +12 -12
  666. package/lib/mol-theme/color/unit-index.d.ts +12 -12
  667. package/lib/mol-theme/color.d.ts +78 -78
  668. package/lib/mol-theme/label.d.ts +1 -0
  669. package/lib/mol-theme/label.js +9 -0
  670. package/lib/mol-theme/label.js.map +1 -1
  671. package/lib/mol-util/color/palette.d.ts +12 -12
  672. package/lib/servers/model/config.js +0 -1
  673. package/lib/servers/model/config.js.map +1 -1
  674. package/lib/servers/volume/config.js +0 -1
  675. package/lib/servers/volume/config.js.map +1 -1
  676. package/lib/tests/browser/index.html +36 -36
  677. package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
  678. package/package.json +159 -155
  679. package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.d.ts +0 -1
  680. package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js +0 -5
  681. package/lib/commonjs/mol-gl/shader/chunks/wboit-params.glsl.js.map +0 -1
  682. package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.d.ts +0 -6
  683. package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js +0 -40
  684. package/lib/commonjs/mol-model/structure/model/properties/utils/guess-element.js.map +0 -1
  685. package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js +0 -3
  686. package/lib/commonjs/mol-repr/structure/visual/aromatic-ring-mesh.js.map +0 -1
  687. package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts +0 -37
  688. package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.js +0 -116
  689. package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone-iterator.js.map +0 -1
  690. package/lib/commonjs/mol-script/util/residue-list.d.ts +0 -7
  691. package/lib/commonjs/mol-script/util/residue-list.js +0 -63
  692. package/lib/commonjs/mol-script/util/residue-list.js.map +0 -1
  693. package/lib/mol-gl/shader/chunks/wboit-params.glsl.d.ts +0 -1
  694. package/lib/mol-gl/shader/chunks/wboit-params.glsl.js +0 -2
  695. package/lib/mol-gl/shader/chunks/wboit-params.glsl.js.map +0 -1
  696. package/lib/mol-model/structure/model/properties/utils/guess-element.d.ts +0 -6
  697. package/lib/mol-model/structure/model/properties/utils/guess-element.js +0 -36
  698. package/lib/mol-model/structure/model/properties/utils/guess-element.js.map +0 -1
  699. package/lib/mol-model-formats/structure/mol copy.d.ts +0 -17
  700. package/lib/mol-model-formats/structure/mol copy.js +0 -86
  701. package/lib/mol-model-formats/structure/mol copy.js.map +0 -1
  702. package/lib/mol-repr/structure/visual/aromatic-ring-mesh.d.ts +0 -0
  703. package/lib/mol-repr/structure/visual/aromatic-ring-mesh.js +0 -3
  704. package/lib/mol-repr/structure/visual/aromatic-ring-mesh.js.map +0 -1
  705. package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.d.ts +0 -37
  706. package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.js +0 -112
  707. package/lib/mol-repr/structure/visual/util/polymer/backbone-iterator.js.map +0 -1
  708. package/lib/mol-script/util/residue-list.d.ts +0 -7
  709. package/lib/mol-script/util/residue-list.js +0 -59
  710. package/lib/mol-script/util/residue-list.js.map +0 -1
@@ -1,37 +1,37 @@
1
- <!DOCTYPE html>
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- <html lang="en">
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- <head>
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- <meta charset="utf-8" />
5
- <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
- <title>Mol* Docking Viewer</title>
7
- <style>
8
- #app {
9
- position: absolute;
10
- left: 100px;
11
- top: 100px;
12
- width: 800px;
13
- height: 600px;
14
- }
15
- </style>
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- <link rel="stylesheet" type="text/css" href="molstar.css" />
17
- </head>
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- <body>
19
- <div id="app"></div>
20
- <script type="text/javascript" src="./molstar.js"></script>
21
- <script type="text/javascript">
22
- var viewer = new DockingViewer('app', [0x33DD22, 0x1133EE], true);
23
-
24
- function getParam(name, regex) {
25
- var r = new RegExp(name + '=' + '(' + regex + ')[&]?', 'i');
26
- return decodeURIComponent(((window.location.search || '').match(r) || [])[1] || '');
27
- }
28
- var pdbqt = getParam('pdbqt', '[^&]+').trim();
29
- var mol2 = getParam('mol2', '[^&]+').trim();
30
-
31
- viewer.loadStructuresFromUrlsAndMerge([
32
- { url: pdbqt, format: 'pdbqt' },
33
- { url: mol2, format: 'mol2' }
34
- ]);
35
- </script>
36
- </body>
1
+ <!DOCTYPE html>
2
+ <html lang="en">
3
+ <head>
4
+ <meta charset="utf-8" />
5
+ <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
+ <title>Mol* Docking Viewer</title>
7
+ <style>
8
+ #app {
9
+ position: absolute;
10
+ left: 100px;
11
+ top: 100px;
12
+ width: 800px;
13
+ height: 600px;
14
+ }
15
+ </style>
16
+ <link rel="stylesheet" type="text/css" href="molstar.css" />
17
+ </head>
18
+ <body>
19
+ <div id="app"></div>
20
+ <script type="text/javascript" src="./molstar.js"></script>
21
+ <script type="text/javascript">
22
+ var viewer = new DockingViewer('app', [0x33DD22, 0x1133EE], true);
23
+
24
+ function getParam(name, regex) {
25
+ var r = new RegExp(name + '=' + '(' + regex + ')[&]?', 'i');
26
+ return decodeURIComponent(((window.location.search || '').match(r) || [])[1] || '');
27
+ }
28
+ var pdbqt = getParam('pdbqt', '[^&]+').trim();
29
+ var mol2 = getParam('mol2', '[^&]+').trim();
30
+
31
+ viewer.loadStructuresFromUrlsAndMerge([
32
+ { url: pdbqt, format: 'pdbqt' },
33
+ { url: mol2, format: 'mol2' }
34
+ ]);
35
+ </script>
36
+ </body>
37
37
  </html>
@@ -1,44 +1,44 @@
1
- <!DOCTYPE html>
2
- <html lang="en">
3
- <head>
4
- <meta charset="utf-8" />
5
- <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
- <link rel="icon" href="./favicon.ico" type="image/x-icon">
7
- <title>Embedded Mol* Viewer</title>
8
- <style>
9
- #app {
10
- position: absolute;
11
- left: 100px;
12
- top: 100px;
13
- width: 800px;
14
- height: 600px;
15
- }
16
- </style>
17
- <link rel="stylesheet" type="text/css" href="molstar.css" />
18
- </head>
19
- <body>
20
- <div id="app"></div>
21
- <script type="text/javascript" src="./molstar.js"></script>
22
- <script type="text/javascript">
23
- var viewer = new molstar.Viewer('app', {
24
- layoutIsExpanded: true,
25
- layoutShowControls: false,
26
- layoutShowRemoteState: false,
27
- layoutShowSequence: true,
28
- layoutShowLog: false,
29
- layoutShowLeftPanel: true,
30
-
31
- viewportShowExpand: true,
32
- viewportShowSelectionMode: false,
33
- viewportShowAnimation: false,
34
-
35
- pdbProvider: 'rcsb',
36
- emdbProvider: 'rcsb',
37
- });
38
- viewer.loadPdb('7bv2');
39
- viewer.loadEmdb('EMD-30210', { detail: 6 });
40
-
41
- // viewer.loadAllModelsOrAssemblyFromUrl('https://cs.litemol.org/5ire/full', 'mmcif', false, { representationParams: { theme: { globalName: 'operator-name' } } })
42
- </script>
43
- </body>
1
+ <!DOCTYPE html>
2
+ <html lang="en">
3
+ <head>
4
+ <meta charset="utf-8" />
5
+ <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
+ <link rel="icon" href="./favicon.ico" type="image/x-icon">
7
+ <title>Embedded Mol* Viewer</title>
8
+ <style>
9
+ #app {
10
+ position: absolute;
11
+ left: 100px;
12
+ top: 100px;
13
+ width: 800px;
14
+ height: 600px;
15
+ }
16
+ </style>
17
+ <link rel="stylesheet" type="text/css" href="molstar.css" />
18
+ </head>
19
+ <body>
20
+ <div id="app"></div>
21
+ <script type="text/javascript" src="./molstar.js"></script>
22
+ <script type="text/javascript">
23
+ var viewer = new molstar.Viewer('app', {
24
+ layoutIsExpanded: true,
25
+ layoutShowControls: false,
26
+ layoutShowRemoteState: false,
27
+ layoutShowSequence: true,
28
+ layoutShowLog: false,
29
+ layoutShowLeftPanel: true,
30
+
31
+ viewportShowExpand: true,
32
+ viewportShowSelectionMode: false,
33
+ viewportShowAnimation: false,
34
+
35
+ pdbProvider: 'rcsb',
36
+ emdbProvider: 'rcsb',
37
+ });
38
+ viewer.loadPdb('7bv2');
39
+ viewer.loadEmdb('EMD-30210', { detail: 6 });
40
+
41
+ // viewer.loadAllModelsOrAssemblyFromUrl('https://cs.litemol.org/5ire/full', 'mmcif', false, { representationParams: { theme: { globalName: 'operator-name' } } })
42
+ </script>
43
+ </body>
44
44
  </html>
@@ -1,16 +1,20 @@
1
1
  /**
2
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author David Sehnal <david.sehnal@gmail.com>
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
+ import { PresetTrajectoryHierarchy } from '../../mol-plugin-state/builder/structure/hierarchy-preset';
7
8
  import { StructureRepresentationPresetProvider } from '../../mol-plugin-state/builder/structure/representation-preset';
8
9
  import { DataFormatProvider } from '../../mol-plugin-state/formats/provider';
10
+ import { BuildInStructureFormat } from '../../mol-plugin-state/formats/structure';
9
11
  import { BuiltInTrajectoryFormat } from '../../mol-plugin-state/formats/trajectory';
10
12
  import { BuildInVolumeFormat } from '../../mol-plugin-state/formats/volume';
13
+ import { PluginStateObject } from '../../mol-plugin-state/objects';
11
14
  import { PluginUIContext } from '../../mol-plugin-ui/context';
12
15
  import { PluginLayoutControlsDisplay } from '../../mol-plugin/layout';
13
16
  import { PluginState } from '../../mol-plugin/state';
17
+ import { StateObjectSelector } from '../../mol-state';
14
18
  import { Color } from '../../mol-util/color';
15
19
  import '../../mol-util/polyfill';
16
20
  import './embedded.html';
@@ -20,7 +24,7 @@ export { PLUGIN_VERSION as version } from '../../mol-plugin/version';
20
24
  export { setDebugMode, setProductionMode } from '../../mol-util/debug';
21
25
  declare const DefaultViewerOptions: {
22
26
  customFormats: [string, DataFormatProvider<any, any, any>][];
23
- extensions: ("geo-export" | "g3d" | "cellpack" | "dnatco-confal-pyramids" | "pdbe-structure-quality-report" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation" | "mp4-export")[];
27
+ extensions: ("g3d" | "cellpack" | "dnatco-confal-pyramids" | "pdbe-structure-quality-report" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation" | "mp4-export" | "geo-export")[];
24
28
  layoutIsExpanded: boolean;
25
29
  layoutShowControls: boolean;
26
30
  layoutShowRemoteState: boolean;
@@ -29,9 +33,12 @@ declare const DefaultViewerOptions: {
29
33
  layoutShowLog: boolean;
30
34
  layoutShowLeftPanel: boolean;
31
35
  collapseLeftPanel: boolean;
32
- disableAntialiasing: boolean;
33
- pixelScale: number;
34
- enableWboit: boolean;
36
+ collapseRightPanel: boolean;
37
+ disableAntialiasing: boolean | undefined;
38
+ pixelScale: number | undefined;
39
+ pickScale: number | undefined;
40
+ pickPadding: number | undefined;
41
+ enableWboit: boolean | undefined;
35
42
  viewportShowExpand: boolean | undefined;
36
43
  viewportShowControls: boolean | undefined;
37
44
  viewportShowSettings: boolean | undefined;
@@ -106,6 +113,256 @@ export declare class Viewer {
106
113
  entryId?: string | string[];
107
114
  isLazy?: boolean;
108
115
  }): Promise<void>;
116
+ /**
117
+ * @example
118
+ * viewer.loadTrajectory({
119
+ * model: { kind: 'model-url', url: 'villin.gro', format: 'gro' },
120
+ * coordinates: { kind: 'coordinates-url', url: 'villin.xtc', format: 'xtc', isBinary: true },
121
+ * preset: 'all-models' // or 'default'
122
+ * });
123
+ */
124
+ loadTrajectory(params: LoadTrajectoryParams): Promise<{
125
+ model: StateObjectSelector<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
126
+ coords: StateObjectSelector<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
127
+ preset: {
128
+ model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
129
+ modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
130
+ unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
131
+ structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
132
+ structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
133
+ representation: {} | {
134
+ components?: undefined;
135
+ representations?: undefined;
136
+ } | {
137
+ components: {
138
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
139
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
140
+ };
141
+ representations: {
142
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
143
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
144
+ };
145
+ } | {
146
+ components?: undefined;
147
+ representations?: undefined;
148
+ } | {
149
+ components: {
150
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
151
+ };
152
+ representations: {
153
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
154
+ };
155
+ } | {
156
+ components?: undefined;
157
+ representations?: undefined;
158
+ } | {
159
+ components: {
160
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
161
+ ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
162
+ nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
163
+ branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
164
+ water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
165
+ ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
166
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
167
+ coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
168
+ };
169
+ representations: {
170
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
171
+ ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
172
+ nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
173
+ branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
174
+ branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
175
+ water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
176
+ ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
177
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
178
+ coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
179
+ };
180
+ } | {
181
+ components?: undefined;
182
+ representations?: undefined;
183
+ } | {
184
+ components: {
185
+ all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
186
+ branched: undefined;
187
+ };
188
+ representations: {
189
+ all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
190
+ };
191
+ } | {
192
+ components?: undefined;
193
+ representations?: undefined;
194
+ } | {
195
+ components: {
196
+ protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
197
+ nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
198
+ };
199
+ representations: {
200
+ protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
201
+ nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
202
+ };
203
+ } | undefined;
204
+ } | {
205
+ models?: undefined;
206
+ structures?: undefined;
207
+ } | {
208
+ models: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>[];
209
+ structures: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>[];
210
+ } | {
211
+ model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
212
+ modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
213
+ unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
214
+ structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
215
+ structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
216
+ representation: {} | {
217
+ components?: undefined;
218
+ representations?: undefined;
219
+ } | {
220
+ components: {
221
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
222
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
223
+ };
224
+ representations: {
225
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
226
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
227
+ };
228
+ } | {
229
+ components?: undefined;
230
+ representations?: undefined;
231
+ } | {
232
+ components: {
233
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
234
+ };
235
+ representations: {
236
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
237
+ };
238
+ } | {
239
+ components?: undefined;
240
+ representations?: undefined;
241
+ } | {
242
+ components: {
243
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
244
+ ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
245
+ nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
246
+ branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
247
+ water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
248
+ ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
249
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
250
+ coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
251
+ };
252
+ representations: {
253
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
254
+ ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
255
+ nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
256
+ branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
257
+ branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
258
+ water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
259
+ ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
260
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
261
+ coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
262
+ };
263
+ } | {
264
+ components?: undefined;
265
+ representations?: undefined;
266
+ } | {
267
+ components: {
268
+ all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
269
+ branched: undefined;
270
+ };
271
+ representations: {
272
+ all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
273
+ };
274
+ } | {
275
+ components?: undefined;
276
+ representations?: undefined;
277
+ } | {
278
+ components: {
279
+ protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
280
+ nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
281
+ };
282
+ representations: {
283
+ protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
284
+ nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
285
+ };
286
+ } | undefined;
287
+ } | {
288
+ model: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
289
+ modelProperties: StateObjectSelector<PluginStateObject.Molecule.Model, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
290
+ unitcell: StateObjectSelector<PluginStateObject.Shape.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
291
+ structure: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
292
+ structureProperties: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
293
+ representation: {} | {
294
+ components?: undefined;
295
+ representations?: undefined;
296
+ } | {
297
+ components: {
298
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
299
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
300
+ };
301
+ representations: {
302
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
303
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
304
+ };
305
+ } | {
306
+ components?: undefined;
307
+ representations?: undefined;
308
+ } | {
309
+ components: {
310
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
311
+ };
312
+ representations: {
313
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
314
+ };
315
+ } | {
316
+ components?: undefined;
317
+ representations?: undefined;
318
+ } | {
319
+ components: {
320
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
321
+ ligand: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
322
+ nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
323
+ branched: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
324
+ water: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
325
+ ion: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
326
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
327
+ coarse: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
328
+ };
329
+ representations: {
330
+ polymer: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
331
+ ligand: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
332
+ nonStandard: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
333
+ branchedBallAndStick: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
334
+ branchedSnfg3d: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
335
+ water: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
336
+ ion: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
337
+ lipid: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
338
+ coarse: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
339
+ };
340
+ } | {
341
+ components?: undefined;
342
+ representations?: undefined;
343
+ } | {
344
+ components: {
345
+ all: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
346
+ branched: undefined;
347
+ };
348
+ representations: {
349
+ all: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
350
+ };
351
+ } | {
352
+ components?: undefined;
353
+ representations?: undefined;
354
+ } | {
355
+ components: {
356
+ protein: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
357
+ nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>> | undefined;
358
+ };
359
+ representations: {
360
+ protein: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
361
+ nucleic: StateObjectSelector<PluginStateObject.Molecule.Structure.Representation3D, import("../../mol-state/transformer").StateTransformer<import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, import("../../mol-state/object").StateObject<any, import("../../mol-state/object").StateObject.Type<any>>, any>>;
362
+ };
363
+ } | undefined;
364
+ } | undefined;
365
+ }>;
109
366
  handleResize(): void;
110
367
  }
111
368
  export interface LoadStructureOptions {
@@ -118,3 +375,37 @@ export interface VolumeIsovalueInfo {
118
375
  alpha?: number;
119
376
  volumeIndex?: number;
120
377
  }
378
+ export interface LoadTrajectoryParams {
379
+ model: {
380
+ kind: 'model-url';
381
+ url: string;
382
+ format?: BuiltInTrajectoryFormat;
383
+ isBinary?: boolean;
384
+ } | {
385
+ kind: 'model-data';
386
+ data: string | number[] | ArrayBuffer | Uint8Array;
387
+ format?: BuiltInTrajectoryFormat;
388
+ } | {
389
+ kind: 'topology-url';
390
+ url: string;
391
+ format: BuildInStructureFormat;
392
+ isBinary?: boolean;
393
+ } | {
394
+ kind: 'topology-data';
395
+ data: string | number[] | ArrayBuffer | Uint8Array;
396
+ format: BuildInStructureFormat;
397
+ };
398
+ modelLabel?: string;
399
+ coordinates: {
400
+ kind: 'coordinates-url';
401
+ url: string;
402
+ format: BuildInStructureFormat;
403
+ isBinary?: boolean;
404
+ } | {
405
+ kind: 'coordinates-data';
406
+ data: string | number[] | ArrayBuffer | Uint8Array;
407
+ format: BuildInStructureFormat;
408
+ };
409
+ coordinatesLabel?: string;
410
+ preset?: keyof PresetTrajectoryHierarchy;
411
+ }