molstar 2.3.2 → 2.3.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (710) hide show
  1. package/CHANGELOG.md +191 -160
  2. package/LICENSE +20 -20
  3. package/README.md +176 -176
  4. package/build/viewer/embedded.html +43 -43
  5. package/build/viewer/index.html +94 -88
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/viewer/embedded.html +43 -43
  9. package/lib/apps/viewer/index.d.ts +296 -5
  10. package/lib/apps/viewer/index.html +94 -88
  11. package/lib/apps/viewer/index.js +96 -6
  12. package/lib/apps/viewer/index.js.map +1 -1
  13. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  14. package/lib/commonjs/apps/viewer/index.d.ts +295 -4
  15. package/lib/commonjs/apps/viewer/index.js +96 -6
  16. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  17. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  18. package/lib/commonjs/cli/cif2bcif/index.js +0 -0
  19. package/lib/commonjs/cli/cifschema/index.js +0 -0
  20. package/lib/commonjs/extensions/cellpack/color/generate.d.ts +1 -1
  21. package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
  22. package/lib/commonjs/extensions/cellpack/color/provided.d.ts +1 -1
  23. package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
  24. package/lib/commonjs/extensions/cellpack/curve.d.ts +2 -2
  25. package/lib/commonjs/extensions/cellpack/curve.js +2 -2
  26. package/lib/commonjs/extensions/cellpack/data.d.ts +32 -0
  27. package/lib/commonjs/extensions/cellpack/index.d.ts +1 -1
  28. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  29. package/lib/commonjs/extensions/cellpack/model.d.ts +5 -3
  30. package/lib/commonjs/extensions/cellpack/model.js +193 -55
  31. package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
  32. package/lib/commonjs/extensions/cellpack/preset.d.ts +2 -1
  33. package/lib/commonjs/extensions/cellpack/preset.js +12 -15
  34. package/lib/commonjs/extensions/cellpack/preset.js.map +1 -1
  35. package/lib/commonjs/extensions/cellpack/property.d.ts +1 -1
  36. package/lib/commonjs/extensions/cellpack/property.js +1 -1
  37. package/lib/commonjs/extensions/cellpack/representation.d.ts +53 -0
  38. package/lib/commonjs/extensions/cellpack/representation.js +47 -0
  39. package/lib/commonjs/extensions/cellpack/representation.js.map +1 -0
  40. package/lib/commonjs/extensions/cellpack/state.d.ts +16 -5
  41. package/lib/commonjs/extensions/cellpack/state.js +233 -26
  42. package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
  43. package/lib/commonjs/extensions/cellpack/util.d.ts +3 -1
  44. package/lib/commonjs/extensions/cellpack/util.js +31 -3
  45. package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
  46. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
  47. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
  48. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  49. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +15 -0
  50. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  51. package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
  52. package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
  53. package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
  54. package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
  55. package/lib/commonjs/mol-canvas3d/camera.js +21 -1
  56. package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
  57. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +14 -4
  58. package/lib/commonjs/mol-canvas3d/canvas3d.js +8 -2
  59. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  60. package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  61. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
  62. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
  63. package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
  64. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  65. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
  66. package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
  67. package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
  68. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  69. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
  70. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  71. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  72. package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
  73. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  74. package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
  75. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
  76. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +19 -11
  77. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
  78. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
  79. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +57 -15
  80. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  81. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  82. package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
  83. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  84. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  85. package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
  86. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  87. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  88. package/lib/commonjs/mol-gl/_spec/cylinders.spec.d.ts +6 -0
  89. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js +42 -0
  90. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js.map +1 -0
  91. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
  92. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js +42 -0
  93. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js.map +1 -0
  94. package/lib/commonjs/mol-gl/_spec/gl.d.ts +9 -0
  95. package/lib/commonjs/mol-gl/_spec/gl.js +33 -0
  96. package/lib/commonjs/mol-gl/_spec/gl.js.map +1 -0
  97. package/lib/commonjs/mol-gl/_spec/gl.shim.js +1 -1
  98. package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
  99. package/lib/commonjs/mol-gl/_spec/image.spec.d.ts +6 -0
  100. package/lib/commonjs/mol-gl/_spec/image.spec.js +42 -0
  101. package/lib/commonjs/mol-gl/_spec/image.spec.js.map +1 -0
  102. package/lib/commonjs/mol-gl/_spec/lines.spec.d.ts +6 -0
  103. package/lib/commonjs/mol-gl/_spec/lines.spec.js +42 -0
  104. package/lib/commonjs/mol-gl/_spec/lines.spec.js.map +1 -0
  105. package/lib/commonjs/mol-gl/_spec/mesh.spec.d.ts +6 -0
  106. package/lib/commonjs/mol-gl/_spec/mesh.spec.js +42 -0
  107. package/lib/commonjs/mol-gl/_spec/mesh.spec.js.map +1 -0
  108. package/lib/commonjs/mol-gl/_spec/points.spec.d.ts +6 -0
  109. package/lib/commonjs/mol-gl/_spec/points.spec.js +42 -0
  110. package/lib/commonjs/mol-gl/_spec/points.spec.js.map +1 -0
  111. package/lib/commonjs/mol-gl/_spec/renderer.spec.d.ts +7 -1
  112. package/lib/commonjs/mol-gl/_spec/renderer.spec.js +6 -44
  113. package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
  114. package/lib/commonjs/mol-gl/_spec/spheres.spec.d.ts +6 -0
  115. package/lib/commonjs/mol-gl/_spec/spheres.spec.js +42 -0
  116. package/lib/commonjs/mol-gl/_spec/spheres.spec.js.map +1 -0
  117. package/lib/commonjs/mol-gl/_spec/text.spec.d.ts +6 -0
  118. package/lib/commonjs/mol-gl/_spec/text.spec.js +42 -0
  119. package/lib/commonjs/mol-gl/_spec/text.spec.js.map +1 -0
  120. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
  121. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js +42 -0
  122. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
  123. package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
  124. package/lib/commonjs/mol-gl/renderer.js +3 -0
  125. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  126. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  127. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  128. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  129. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  130. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  131. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js.map +1 -1
  132. package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
  133. package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
  134. package/lib/commonjs/mol-gl/shader/lines.vert.js.map +1 -1
  135. package/lib/commonjs/mol-gl/shader/points.vert.d.ts +1 -1
  136. package/lib/commonjs/mol-gl/shader/points.vert.js +1 -1
  137. package/lib/commonjs/mol-gl/shader/points.vert.js.map +1 -1
  138. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  139. package/lib/commonjs/mol-gl/webgl/context.js +4 -2
  140. package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
  141. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +5 -5
  142. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  143. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +3 -3
  144. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  145. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +22 -22
  146. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  147. package/lib/commonjs/mol-math/geometry/primitives/axes3d.d.ts +2 -1
  148. package/lib/commonjs/mol-math/geometry/primitives/axes3d.js +9 -2
  149. package/lib/commonjs/mol-math/geometry/primitives/axes3d.js.map +1 -1
  150. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +3 -1
  151. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +11 -3
  152. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  153. package/lib/commonjs/mol-math/misc.d.ts +3 -1
  154. package/lib/commonjs/mol-math/misc.js +24 -2
  155. package/lib/commonjs/mol-math/misc.js.map +1 -1
  156. package/lib/commonjs/mol-model/loci.d.ts +32 -32
  157. package/lib/commonjs/mol-model/loci.js +4 -3
  158. package/lib/commonjs/mol-model/loci.js.map +1 -1
  159. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  160. package/lib/commonjs/mol-model/structure/structure/element/loci.d.ts +1 -0
  161. package/lib/commonjs/mol-model/structure/structure/element/loci.js +14 -0
  162. package/lib/commonjs/mol-model/structure/structure/element/loci.js.map +1 -1
  163. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +3 -3
  164. package/lib/commonjs/mol-model/structure/structure/structure.js +2 -1
  165. package/lib/commonjs/mol-model/structure/structure/structure.js.map +1 -1
  166. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  167. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js.map +1 -1
  168. package/lib/commonjs/mol-model/structure/structure/unit/bonds.d.ts +2 -1
  169. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +6 -1
  170. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js.map +1 -1
  171. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +8 -8
  172. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
  173. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
  174. package/lib/commonjs/mol-model-formats/structure/common/entity.d.ts +1 -1
  175. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +29 -3
  176. package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map +1 -1
  177. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +3 -0
  178. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +3 -0
  179. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +9 -0
  180. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +12 -0
  181. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  182. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  183. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +4 -2
  184. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +22 -8
  185. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map +1 -1
  186. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +1 -1
  187. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js.map +1 -1
  188. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  189. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  190. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +5 -5
  191. package/lib/commonjs/mol-plugin/commands.d.ts +6 -2
  192. package/lib/commonjs/mol-plugin/config.d.ts +1 -0
  193. package/lib/commonjs/mol-plugin/config.js +11 -3
  194. package/lib/commonjs/mol-plugin/config.js.map +1 -1
  195. package/lib/commonjs/mol-plugin/context.js +6 -4
  196. package/lib/commonjs/mol-plugin/context.js.map +1 -1
  197. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +6 -6
  198. package/lib/commonjs/mol-plugin-state/builder/data.d.ts +3 -3
  199. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +17 -17
  200. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +9 -9
  201. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  202. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +20 -16
  203. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js.map +1 -1
  204. package/lib/commonjs/mol-plugin-state/formats/shape.d.ts +2 -2
  205. package/lib/commonjs/mol-plugin-state/formats/structure.d.ts +6 -6
  206. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +26 -26
  207. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +7 -7
  208. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  209. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +2 -2
  210. package/lib/commonjs/mol-plugin-state/manager/interactivity.js +12 -11
  211. package/lib/commonjs/mol-plugin-state/manager/interactivity.js.map +1 -1
  212. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.d.ts +7 -2
  213. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +111 -13
  214. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js.map +1 -1
  215. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +3 -3
  216. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +4 -10
  217. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js.map +1 -1
  218. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +6 -6
  219. package/lib/commonjs/mol-plugin-state/transforms/helpers.d.ts +3 -1
  220. package/lib/commonjs/mol-plugin-state/transforms/helpers.js +7 -4
  221. package/lib/commonjs/mol-plugin-state/transforms/helpers.js.map +1 -1
  222. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +9 -9
  223. package/lib/commonjs/mol-plugin-state/transforms/model.js.map +1 -1
  224. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +18 -3
  225. package/lib/commonjs/mol-plugin-state/transforms/representation.js +54 -2
  226. package/lib/commonjs/mol-plugin-state/transforms/representation.js.map +1 -1
  227. package/lib/commonjs/mol-plugin-ui/sequence.d.ts +1 -1
  228. package/lib/commonjs/mol-plugin-ui/sequence.js +16 -2
  229. package/lib/commonjs/mol-plugin-ui/sequence.js.map +1 -1
  230. package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +11 -2
  231. package/lib/commonjs/mol-plugin-ui/structure/measurements.js +49 -6
  232. package/lib/commonjs/mol-plugin-ui/structure/measurements.js.map +1 -1
  233. package/lib/commonjs/mol-plugin-ui/structure/selection.d.ts +1 -1
  234. package/lib/commonjs/mol-repr/representation.d.ts +1 -0
  235. package/lib/commonjs/mol-repr/representation.js +10 -4
  236. package/lib/commonjs/mol-repr/representation.js.map +1 -1
  237. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +6 -5
  238. package/lib/commonjs/mol-repr/shape/loci/orientation.js +37 -51
  239. package/lib/commonjs/mol-repr/shape/loci/orientation.js.map +1 -1
  240. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +27 -0
  241. package/lib/commonjs/mol-repr/shape/loci/plane.js +61 -0
  242. package/lib/commonjs/mol-repr/shape/loci/plane.js.map +1 -0
  243. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -1
  244. package/lib/commonjs/mol-repr/structure/params.d.ts +1 -1
  245. package/lib/commonjs/mol-repr/structure/registry.d.ts +34 -15
  246. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +18 -6
  247. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +9 -0
  248. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
  249. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +18 -6
  250. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +6 -6
  251. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  252. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +40 -19
  253. package/lib/commonjs/mol-repr/structure/representation/line.js +10 -4
  254. package/lib/commonjs/mol-repr/structure/representation/line.js.map +1 -1
  255. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +6 -6
  256. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +1 -1
  257. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +12 -4
  258. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +20 -9
  259. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js.map +1 -1
  260. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +4 -2
  261. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +13 -8
  262. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js.map +1 -1
  263. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +12 -4
  264. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +21 -7
  265. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js.map +1 -1
  266. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +4 -2
  267. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +14 -6
  268. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js.map +1 -1
  269. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +3 -0
  270. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +3 -0
  271. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +26 -0
  272. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +77 -0
  273. package/lib/commonjs/mol-repr/structure/visual/element-cross.js.map +1 -0
  274. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  275. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +8 -8
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-
381
- .msp-state-snapshot-viewport-controls {
382
- line-height: $row-height;
383
- float: left;
384
- margin-right: $control-spacing;
385
-
386
- > button {
387
- background-color: $msp-form-control-background;
388
- }
389
-
390
- > select {
391
- display: inline-block;
392
- width: 200px;
393
- margin-right: $control-spacing;
394
- }
395
- }
396
-
397
- .msp-animation-viewport-controls {
398
- line-height: $row-height;
399
- float: left;
400
- margin-right: $control-spacing;
401
- position: relative;
402
-
403
- > div:first-child {
404
- position: relative;
405
- display: inline-block;
406
-
407
- > button {
408
- position: relative;
409
- }
410
- }
411
-
412
- .msp-animation-viewport-controls-select {
413
- width: 290px;
414
- position: absolute;
415
- left: 0;
416
- margin-top: $control-spacing;
417
- background: $control-background;
418
-
419
- .msp-control-row:first-child {
420
- margin-top: 0;
421
- }
422
- }
423
- }
424
- }
425
-
426
- .msp-selection-viewport-controls {
427
- position: relative;
428
- // display: inline-block;
429
- margin: $control-spacing auto 0 auto;
430
- width: 430px;
431
-
432
- &-actions {
433
- position: absolute;
434
- width: 100%;
435
- top: $row-height;
436
- background: $control-background;
437
- }
438
-
439
- > .msp-flex-row .msp-btn {
440
- padding: 0 5px;
441
- }
442
-
443
- select.msp-form-control {
444
- padding: 0 5px;
445
- text-align: center;
446
- background: $msp-form-control-background;
447
- flex: 0 0 80px;
448
- text-overflow: ellipsis;
449
- }
450
- }
451
-
452
- .msp-param-object-list-item {
453
- margin-top: 1px;
454
- position: relative;
455
- > button {
456
- text-align: left;
457
- > span {
458
- font-weight: bold;
459
- }
460
- }
461
- > div {
462
- position: absolute;
463
- right: 0;
464
- top: 0
465
- }
466
- }
467
-
468
- .msp-state-actions {
469
- .msp-transform-wrapper:last-child {
470
- margin-bottom: 10px;
471
- }
472
- }
473
-
474
- .msp-button-row {
475
- display:flex;
476
- flex-direction:row;
477
- height: $row-height;
478
- width: inherit;
479
-
480
- > button {
481
- margin: 0;
482
- flex: 1 1 auto;
483
- margin-right: 1px;
484
- height: $row-height;
485
-
486
- text-align-last: center;
487
- background: none;
488
- padding: 0 $control-spacing;
489
- overflow: hidden;
490
- }
491
- }
492
-
493
- .msp-action-menu-options {
494
- &-no-header, .msp-control-group-children {
495
- max-height: 300px;
496
- overflow: hidden;
497
- overflow-y: auto;
498
- }
499
-
500
- .msp-control-row, button, .msp-icon, .msp-flex-row {
501
- height: 24px;
502
- line-height: 24px;
503
- }
504
-
505
- button {
506
- text-align: left;
507
- }
508
-
509
-
510
- .msp-action-menu-button {
511
- margin-top: 1px;
512
- display: flex;
513
- .msp-icon {
514
- margin-right: 6px;
515
- }
516
- }
517
- }
518
-
519
- .msp-representation-entry {
520
- position: relative;
521
- > .msp-control-group-header {
522
- > .msp-btn {
523
- font-weight: bold;
524
- }
525
- > .msp-icon, > .msp-btn-link {
526
- line-height: 24px;
527
- height: 24px;
528
- }
529
- }
530
- }
531
-
532
- .msp-parameter-matrix {
533
- input {
534
- flex: 1 1 auto;
535
- min-width: 0;
536
- }
537
- }
538
-
539
- .msp-btn-apply-simple {
540
- text-align: left;
541
- .msp-icon {
542
- margin-right: 10px;
543
- }
544
- }
545
-
546
- @mixin type-class-border($name, $color) {
547
- .msp-type-class-#{$name} {
548
- border-left-color: $color;
549
- }
550
- }
551
-
552
- // TypeClass = 'Root' | 'Group' | 'Data' | 'Object' | 'Representation3D' | 'Behavior'
553
- @include type-class-border('Root', $type-class-Root);
554
- @include type-class-border('Group', $type-class-Group);
555
- @include type-class-border('Data', $type-class-Data);
556
- @include type-class-border('Object', $type-class-Object);
557
- @include type-class-border('Representation3D', $type-class-Representation3D);
558
- @include type-class-border('Behavior', $type-class-Behavior);
559
-
560
- @mixin accent($name, $color) {
561
- .msp-accent-color-#{$name} {
562
- color: $color;
563
- }
564
- .msp-accent-bg-#{$name} {
565
- background: $color;
566
- }
567
- .msp-transform-header-brand-#{$name} {
568
- border-bottom: 1px solid $color;
569
- &:active, &:focus {
570
- border-bottom: 1px solid $color;
571
- }
572
- }
573
- }
574
-
575
- @include accent('cyan', $color-accent-cyan);
576
- @include accent('red', $color-accent-red);
577
- @include accent('gray', $color-accent-gray);
578
- @include accent('green', $color-accent-green);
579
- @include accent('purple', $color-accent-purple);
580
- @include accent('blue', $color-accent-blue);
581
- @include accent('orange', $color-accent-orange);
582
-
583
- .msp-volume-channel-inline-controls {
584
- > :first-child {
585
- position: absolute;
586
- left: 0;
587
- top: 0;
588
- height: $row-height;
589
- right: 32px;
590
- }
591
-
592
- .msp-slider {
593
- > div:first-child() {
594
- right: 42px;
595
- }
596
- > div:last-child() {
597
- width: 30px;
598
- }
599
- }
600
-
601
- > button {
602
- position: absolute;
603
- right: 0;
604
- width: 32px;
605
- top: 0;
606
- padding: 0;
607
-
608
- .msp-material-icon {
609
- margin-right: 0;
610
- }
611
- }
612
- }
613
-
614
- .msp-list-unstyled {
615
- padding-left: 0;
616
- list-style: none;
1
+ .msp-description {
2
+ padding: $control-spacing;
3
+ font-size: 85%;
4
+ background: $default-background;
5
+ text-align: center;
6
+ //font-style: italic;
7
+
8
+ -webkit-user-select: none; /* Chrome/Safari */
9
+ -moz-user-select: none; /* Firefox */
10
+ -ms-user-select: none; /* IE10+ */
11
+
12
+ /* Rules below not implemented in browsers yet */
13
+ -o-user-select: none;
14
+ user-select: none;
15
+
16
+ font-weight: light;
17
+
18
+ cursor: default;
19
+ }
20
+
21
+ .msp-description:not(:first-child) {
22
+ border-top: 1px solid $control-background;
23
+ }
24
+
25
+ .msp-color-picker input {
26
+ color: black !important;
27
+ }
28
+
29
+ .msp-no-webgl {
30
+ position: absolute;
31
+ width: 100%;
32
+ height: 100%;
33
+ left: 0;
34
+ top: 0;
35
+ display: table;
36
+ text-align: center;
37
+ background: $default-background;
38
+
39
+ > div {
40
+ b {
41
+ font-size: 120%;
42
+ }
43
+ display: table-cell;
44
+ vertical-align: middle;
45
+ text-align: center;
46
+ width: 100%;
47
+ height: 100%;
48
+ }
49
+ }
50
+
51
+ .msp-loader-msp-btn-file {
52
+ position: relative;
53
+ overflow: hidden;
54
+ }
55
+
56
+ .msp-loader-msp-btn-file input[type=file] {
57
+ position: absolute;
58
+ top: 0;
59
+ right: 0;
60
+ min-width: 100%;
61
+ min-height: 100%;
62
+ font-size: 100px;
63
+ text-align: right;
64
+ filter: alpha(opacity=0);
65
+ opacity: 0;
66
+ outline: none;
67
+ background: white;
68
+ cursor: inherit;
69
+ display: block;
70
+ }
71
+
72
+ .msp-controls-section {
73
+ margin-bottom: $control-spacing;
74
+ }
75
+
76
+ .msp-combined-color-button {
77
+ border: 4px solid $msp-form-control-background !important;
78
+ margin: 0;
79
+ text-align: center;
80
+ padding-right: $control-spacing;
81
+ padding-left: $control-spacing;
82
+
83
+ &:hover {
84
+ border-color: color-increase-contrast($msp-form-control-background, 5%) !important;
85
+ border: none;
86
+ outline-offset: -1px !important;
87
+ outline: 1px solid color-increase-contrast($msp-form-control-background, 20%) !important;
88
+ }
89
+ }
90
+
91
+ .msp-combined-color-swatch {
92
+ width: 100%;
93
+ display: grid;
94
+ grid-gap: 1px;
95
+ grid-template-columns: repeat(6, auto);
96
+
97
+ .msp-btn {
98
+ &:hover {
99
+ outline-offset: -1px !important;
100
+ outline: 1px solid color-increase-contrast($msp-form-control-background, 20%) !important;
101
+ }
102
+ }
103
+ }
104
+
105
+ .msp-action-select {
106
+ position: relative;
107
+
108
+ select {
109
+ padding-left: $control-spacing + $row-height;
110
+ }
111
+
112
+ option:first-child {
113
+ color: color-lower-contrast($font-color, 15%);
114
+ }
115
+
116
+ > .msp-icon {
117
+ display: block;
118
+ top: 0;
119
+ left: $control-spacing;
120
+ position: absolute;
121
+ line-height: $row-height;
122
+ }
123
+ }
124
+
125
+ .msp-simple-help-section {
126
+ height: 28px;
127
+ line-height: 28px;
128
+ margin-top: 5px;
129
+ margin-bottom: 5px;
130
+ padding: 0 10px;
131
+ font-weight: 500;
132
+ background: $default-background;
133
+ color: $font-color;
134
+ }
135
+
136
+ .msp-left-panel-controls-buttons {
137
+ position: absolute;
138
+ width: $row-height;
139
+ top: 0;
140
+ bottom: 0;
141
+ padding-top: $control-spacing;
142
+
143
+ background: $default-background;
144
+
145
+ // .msp-btn-link-toggle-on {
146
+ // border-left: 1px solid $font-color;
147
+ // }
148
+ }
149
+
150
+ .msp-left-panel-controls-buttons-bottom {
151
+ position: absolute;
152
+ bottom: 0;
153
+ }
154
+
155
+ .msp-left-panel-controls-button-data-dirty {
156
+ position: absolute;
157
+ width: 6px;
158
+ height: 6px;
159
+ background: $color-accent-orange;
160
+ border-radius: 3px;
161
+ right: 6px;
162
+ bottom: 6px;
163
+ }
164
+
165
+ .msp-left-panel-controls {
166
+ .msp-scrollable-container {
167
+ left: $row-height + 1px;
168
+ }
169
+ }
170
+
171
+ .msp-mapped-parameter-group {
172
+ position: relative;
173
+
174
+ > .msp-control-row:first-child {
175
+ > div:nth-child(2) {
176
+ right: 33px;
177
+ }
178
+ }
179
+
180
+ > button:first-child {
181
+ right: 33px;
182
+ }
183
+
184
+ > .msp-btn-icon {
185
+ position: absolute;
186
+ right: 0;
187
+ width: 32px;
188
+ top: 0;
189
+ padding: 0;
190
+ }
191
+ }
192
+
193
+ .msp-shape-filled {
194
+ fill: $font-color;
195
+ stroke: $font-color;
196
+ }
197
+
198
+ .msp-shape-empty {
199
+ fill: none;
200
+ stroke: $font-color;
201
+ }
202
+
203
+ .msp-no-overflow {
204
+ overflow: hidden;
205
+ text-overflow: ellipsis;
206
+ white-space: nowrap;
207
+ }
208
+
209
+ .msp-25-lower-contrast-text {
210
+ color: color-lower-contrast($font-color, 25%);
211
+ }
212
+
213
+ .msp-expandable-group-color-stripe {
214
+ position: absolute;
215
+ left: 0;
216
+ top: $row-height - 2px;
217
+ width: $control-label-width + $control-spacing;
218
+ height: 2px;
219
+ }
220
+
221
+ .msp-section-header {
222
+ height: $row-height;
223
+ line-height: $row-height;
224
+ margin-top: $control-spacing;
225
+ margin-bottom: $control-spacing;
226
+ text-align: right;
227
+ padding: 0 $control-spacing;
228
+ font-weight: bold;
229
+ background: $default-background;
230
+ overflow: hidden;
231
+ // border-bottom: 1px solid $color-accent-orange;
232
+ cursor: default;
233
+
234
+ > .msp-icon {
235
+ display: block;
236
+ float: left;
237
+ }
238
+
239
+ > small {
240
+ font-weight: normal;
241
+ }
242
+ }
243
+
244
+ .msp-current-header {
245
+ height: $row-height;
246
+ line-height: $row-height;
247
+ margin-bottom: $control-spacing;
248
+ text-align: center;
249
+ font-weight: bold;
250
+ background: $default-background;
251
+ }
252
+
253
+ .msp-flex-row {
254
+ margin-top: 1px;
255
+ background: $default-background;
256
+
257
+ display:flex;
258
+ flex-direction:row;
259
+ width: inherit;
260
+ height: $row-height;
261
+
262
+ > .msp-flex-item {
263
+ margin: 0;
264
+ flex: 1 1 auto;
265
+ margin-right: 1px;
266
+ overflow: hidden;
267
+ }
268
+
269
+ > .msp-flex-item:last-child {
270
+ margin-right: 0;
271
+ }
272
+
273
+ > select, > button {
274
+ margin: 0;
275
+ flex: 1 1 auto;
276
+ margin-right: 1px;
277
+ height: $row-height;
278
+
279
+ // text-align-last: center;
280
+ // padding: 0 $control-spacing;
281
+ overflow: hidden;
282
+ }
283
+
284
+ .msp-btn-icon, .msp-btn-icon-small {
285
+ flex: 0 0 32px;
286
+ max-width: 32px;
287
+ }
288
+
289
+ > select {
290
+ background: none;
291
+
292
+ > option[value = _] {
293
+ display: none;
294
+ }
295
+ }
296
+
297
+ > select:last-child, > button:last-child {
298
+ margin-right: 0;
299
+ }
300
+
301
+ > button.msp-control-button-label {
302
+ background: $default-background;
303
+ }
304
+ }
305
+
306
+ .msp-state-list {
307
+ list-style: none;
308
+ // margin-top: $control-spacing;
309
+
310
+ > li {
311
+ position: relative;
312
+ overflow: hidden;
313
+
314
+ > button:first-child {
315
+ text-align: left;
316
+ border-left: $control-spacing solid color-increase-contrast($default-background, 12%) !important;
317
+ }
318
+
319
+ > div {
320
+ position: absolute;
321
+ right: 0;
322
+ top: 0;
323
+ }
324
+ }
325
+ }
326
+
327
+ .msp-tree-row {
328
+ position: relative;
329
+ margin-top: 0;
330
+ margin-bottom: 1px;
331
+ background: transparent;
332
+
333
+ &-current {
334
+ .msp-btn-tree-label {
335
+ > span {
336
+ font-weight: bold;
337
+ }
338
+
339
+ border-radius: 0 !important;
340
+ }
341
+ }
342
+
343
+ .msp-btn-tree-label {
344
+ text-align: left;
345
+ border-radius: 0 0 0 8px;
346
+ border-left-width: 4px;
347
+ border-left-style: solid;
348
+ }
349
+
350
+ .msp-btn-tree-label > small {
351
+ color: color-lower-contrast($font-color, 20%);
352
+ }
353
+ }
354
+
355
+ .msp-tree-updates-wrapper {
356
+ .msp-control-group-header:last-child {
357
+ margin-bottom: 1px;
358
+ }
359
+ }
360
+
361
+ .msp-viewport-top-left-controls {
362
+ position: absolute;
363
+ left: $control-spacing;
364
+ top: $control-spacing;
365
+
366
+ .msp-traj-controls {
367
+ line-height: $row-height;
368
+ float: left;
369
+ margin-right: $control-spacing;
370
+ background-color: $msp-form-control-background;
371
+
372
+ > span {
373
+ color: $font-color;
374
+ margin-left: $control-spacing;
375
+ margin-right: $control-spacing;
376
+ font-size: 85%;
377
+ display: inline-block;
378
+ }
379
+ }
380
+
381
+ .msp-state-snapshot-viewport-controls {
382
+ line-height: $row-height;
383
+ float: left;
384
+ margin-right: $control-spacing;
385
+
386
+ > button {
387
+ background-color: $msp-form-control-background;
388
+ }
389
+
390
+ > select {
391
+ display: inline-block;
392
+ width: 200px;
393
+ margin-right: $control-spacing;
394
+ }
395
+ }
396
+
397
+ .msp-animation-viewport-controls {
398
+ line-height: $row-height;
399
+ float: left;
400
+ margin-right: $control-spacing;
401
+ position: relative;
402
+
403
+ > div:first-child {
404
+ position: relative;
405
+ display: inline-block;
406
+
407
+ > button {
408
+ position: relative;
409
+ }
410
+ }
411
+
412
+ .msp-animation-viewport-controls-select {
413
+ width: 290px;
414
+ position: absolute;
415
+ left: 0;
416
+ margin-top: $control-spacing;
417
+ background: $control-background;
418
+
419
+ .msp-control-row:first-child {
420
+ margin-top: 0;
421
+ }
422
+ }
423
+ }
424
+ }
425
+
426
+ .msp-selection-viewport-controls {
427
+ position: relative;
428
+ // display: inline-block;
429
+ margin: $control-spacing auto 0 auto;
430
+ width: 430px;
431
+
432
+ &-actions {
433
+ position: absolute;
434
+ width: 100%;
435
+ top: $row-height;
436
+ background: $control-background;
437
+ }
438
+
439
+ > .msp-flex-row .msp-btn {
440
+ padding: 0 5px;
441
+ }
442
+
443
+ select.msp-form-control {
444
+ padding: 0 5px;
445
+ text-align: center;
446
+ background: $msp-form-control-background;
447
+ flex: 0 0 80px;
448
+ text-overflow: ellipsis;
449
+ }
450
+ }
451
+
452
+ .msp-param-object-list-item {
453
+ margin-top: 1px;
454
+ position: relative;
455
+ > button {
456
+ text-align: left;
457
+ > span {
458
+ font-weight: bold;
459
+ }
460
+ }
461
+ > div {
462
+ position: absolute;
463
+ right: 0;
464
+ top: 0
465
+ }
466
+ }
467
+
468
+ .msp-state-actions {
469
+ .msp-transform-wrapper:last-child {
470
+ margin-bottom: 10px;
471
+ }
472
+ }
473
+
474
+ .msp-button-row {
475
+ display:flex;
476
+ flex-direction:row;
477
+ height: $row-height;
478
+ width: inherit;
479
+
480
+ > button {
481
+ margin: 0;
482
+ flex: 1 1 auto;
483
+ margin-right: 1px;
484
+ height: $row-height;
485
+
486
+ text-align-last: center;
487
+ background: none;
488
+ padding: 0 $control-spacing;
489
+ overflow: hidden;
490
+ }
491
+ }
492
+
493
+ .msp-action-menu-options {
494
+ &-no-header, .msp-control-group-children {
495
+ max-height: 300px;
496
+ overflow: hidden;
497
+ overflow-y: auto;
498
+ }
499
+
500
+ .msp-control-row, button, .msp-icon, .msp-flex-row {
501
+ height: 24px;
502
+ line-height: 24px;
503
+ }
504
+
505
+ button {
506
+ text-align: left;
507
+ }
508
+
509
+
510
+ .msp-action-menu-button {
511
+ margin-top: 1px;
512
+ display: flex;
513
+ .msp-icon {
514
+ margin-right: 6px;
515
+ }
516
+ }
517
+ }
518
+
519
+ .msp-representation-entry {
520
+ position: relative;
521
+ > .msp-control-group-header {
522
+ > .msp-btn {
523
+ font-weight: bold;
524
+ }
525
+ > .msp-icon, > .msp-btn-link {
526
+ line-height: 24px;
527
+ height: 24px;
528
+ }
529
+ }
530
+ }
531
+
532
+ .msp-parameter-matrix {
533
+ input {
534
+ flex: 1 1 auto;
535
+ min-width: 0;
536
+ }
537
+ }
538
+
539
+ .msp-btn-apply-simple {
540
+ text-align: left;
541
+ .msp-icon {
542
+ margin-right: 10px;
543
+ }
544
+ }
545
+
546
+ @mixin type-class-border($name, $color) {
547
+ .msp-type-class-#{$name} {
548
+ border-left-color: $color;
549
+ }
550
+ }
551
+
552
+ // TypeClass = 'Root' | 'Group' | 'Data' | 'Object' | 'Representation3D' | 'Behavior'
553
+ @include type-class-border('Root', $type-class-Root);
554
+ @include type-class-border('Group', $type-class-Group);
555
+ @include type-class-border('Data', $type-class-Data);
556
+ @include type-class-border('Object', $type-class-Object);
557
+ @include type-class-border('Representation3D', $type-class-Representation3D);
558
+ @include type-class-border('Behavior', $type-class-Behavior);
559
+
560
+ @mixin accent($name, $color) {
561
+ .msp-accent-color-#{$name} {
562
+ color: $color;
563
+ }
564
+ .msp-accent-bg-#{$name} {
565
+ background: $color;
566
+ }
567
+ .msp-transform-header-brand-#{$name} {
568
+ border-bottom: 1px solid $color;
569
+ &:active, &:focus {
570
+ border-bottom: 1px solid $color;
571
+ }
572
+ }
573
+ }
574
+
575
+ @include accent('cyan', $color-accent-cyan);
576
+ @include accent('red', $color-accent-red);
577
+ @include accent('gray', $color-accent-gray);
578
+ @include accent('green', $color-accent-green);
579
+ @include accent('purple', $color-accent-purple);
580
+ @include accent('blue', $color-accent-blue);
581
+ @include accent('orange', $color-accent-orange);
582
+
583
+ .msp-volume-channel-inline-controls {
584
+ > :first-child {
585
+ position: absolute;
586
+ left: 0;
587
+ top: 0;
588
+ height: $row-height;
589
+ right: 32px;
590
+ }
591
+
592
+ .msp-slider {
593
+ > div:first-child() {
594
+ right: 42px;
595
+ }
596
+ > div:last-child() {
597
+ width: 30px;
598
+ }
599
+ }
600
+
601
+ > button {
602
+ position: absolute;
603
+ right: 0;
604
+ width: 32px;
605
+ top: 0;
606
+ padding: 0;
607
+
608
+ .msp-material-icon {
609
+ margin-right: 0;
610
+ }
611
+ }
612
+ }
613
+
614
+ .msp-list-unstyled {
615
+ padding-left: 0;
616
+ list-style: none;
617
617
  }