npm - larvitar - Versions diffs - 1.2.0 → 1.2.1 - Mend

larvitar 1.2.0 → 1.2.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (190) hide show

package/.github/workflows/build-docs.yml +1 -1
package/.github/workflows/deploy.yml +4 -4
package/README.md +3 -3
package/modules/vuex/larvitar.js +1 -0
package/package.json +1 -1
package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +0 -171
package/docs/documentation/Tools.Annotation.ContoursTool.html +0 -218
package/docs/documentation/Tools.Annotation.DiameterTool.html +0 -219
package/docs/documentation/Tools.Annotation.SeedsTool.html +0 -214
package/docs/documentation/Tools.Brush.BrushTool.html +0 -218
package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +0 -218
package/docs/documentation/Tools.PolylineScissorsTool.html +0 -218
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff2 +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +0 -978
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +0 -1049
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
package/docs/documentation/global.html +0 -1303
package/docs/documentation/imageAnonymization.js.html +0 -245
package/docs/documentation/imageColormaps.js.html +0 -283
package/docs/documentation/imageContours.js.html +0 -278
package/docs/documentation/imageIo.js.html +0 -291
package/docs/documentation/imageLayers.js.html +0 -188
package/docs/documentation/imageLoading.js.html +0 -297
package/docs/documentation/imageParsing.js.html +0 -385
package/docs/documentation/imagePresets.js.html +0 -207
package/docs/documentation/imageRendering.js.html +0 -849
package/docs/documentation/imageReslice.js.html +0 -162
package/docs/documentation/imageStore.js.html +0 -360
package/docs/documentation/imageTools.js.html +0 -784
package/docs/documentation/imageUtils.js.html +0 -1609
package/docs/documentation/image_colormaps.js.html +0 -283
package/docs/documentation/image_contours.js.html +0 -279
package/docs/documentation/image_io.js.html +0 -288
package/docs/documentation/image_layers.js.html +0 -188
package/docs/documentation/image_loading.js.html +0 -294
package/docs/documentation/image_parsing.js.html +0 -391
package/docs/documentation/image_presets.js.html +0 -207
package/docs/documentation/image_rendering.js.html +0 -845
package/docs/documentation/image_reslice.js.html +0 -164
package/docs/documentation/image_store.js.html +0 -359
package/docs/documentation/image_tools.js.html +0 -792
package/docs/documentation/image_utils.js.html +0 -1609
package/docs/documentation/index.html +0 -175
package/docs/documentation/loaders_commonLoader.js.html +0 -306
package/docs/documentation/loaders_dicomLoader.js.html +0 -130
package/docs/documentation/loaders_fileLoader.js.html +0 -155
package/docs/documentation/loaders_multiframeLoader.js.html +0 -443
package/docs/documentation/loaders_niftiLoader.js.html +0 -150
package/docs/documentation/loaders_nrrdLoader.js.html +0 -545
package/docs/documentation/loaders_resliceLoader.js.html +0 -258
package/docs/documentation/module-imaging_contours.html +0 -954
package/docs/documentation/module-imaging_imageAnonymization.html +0 -544
package/docs/documentation/module-imaging_imageColormaps.html +0 -1012
package/docs/documentation/module-imaging_imageContours.html +0 -954
package/docs/documentation/module-imaging_imageIo.html +0 -1057
package/docs/documentation/module-imaging_imageLayers.html +0 -904
package/docs/documentation/module-imaging_imageLoading.html +0 -1301
package/docs/documentation/module-imaging_imageParsing.html +0 -1356
package/docs/documentation/module-imaging_imagePresets.html +0 -679
package/docs/documentation/module-imaging_imageRendering.html +0 -3223
package/docs/documentation/module-imaging_imageReslice.html +0 -413
package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +0 -284
package/docs/documentation/module-imaging_imageStore.html +0 -1560
package/docs/documentation/module-imaging_imageTools.html +0 -3617
package/docs/documentation/module-imaging_imageUtils.html +0 -7253
package/docs/documentation/module-imaging_io.html +0 -1057
package/docs/documentation/module-imaging_layers.html +0 -904
package/docs/documentation/module-imaging_loading.html +0 -1301
package/docs/documentation/module-imaging_parsing.html +0 -1375
package/docs/documentation/module-imaging_presets.html +0 -679
package/docs/documentation/module-imaging_rendering.html +0 -8094
package/docs/documentation/module-imaging_reslice.html +0 -411
package/docs/documentation/module-imaging_store-Larvitar_Store.html +0 -284
package/docs/documentation/module-imaging_store.html +0 -1537
package/docs/documentation/module-imaging_strategies_eraseFreehand.html +0 -708
package/docs/documentation/module-imaging_strategies_fillFreehand.html +0 -708
package/docs/documentation/module-imaging_tools.html +0 -3617
package/docs/documentation/module-imaging_tools_custom_contourTool.html +0 -207
package/docs/documentation/module-imaging_tools_custom_diameterTool.html +0 -205
package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +0 -205
package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +0 -203
package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +0 -684
package/docs/documentation/module-imaging_tools_default.html +0 -205
package/docs/documentation/module-imaging_tools_interaction.html +0 -530
package/docs/documentation/module-imaging_tools_io.html +0 -832
package/docs/documentation/module-imaging_tools_main.html +0 -2028
package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +0 -567
package/docs/documentation/module-imaging_tools_segmentation.html +0 -3586
package/docs/documentation/module-imaging_tools_state.html +0 -494
package/docs/documentation/module-imaging_utils.html +0 -7253
package/docs/documentation/module-loaders_commonLoader.html +0 -1313
package/docs/documentation/module-loaders_dicomLoader.html +0 -522
package/docs/documentation/module-loaders_fileLoader.html +0 -593
package/docs/documentation/module-loaders_multiframeLoader.html +0 -1169
package/docs/documentation/module-loaders_niftiLoader.html +0 -565
package/docs/documentation/module-loaders_nrrdLoader.html +0 -1459
package/docs/documentation/module-loaders_resliceLoader.html +0 -590
package/docs/documentation/module-monitors_memory.html +0 -980
package/docs/documentation/module-tools_default.html +0 -740
package/docs/documentation/module.exports_module.exports.html +0 -203
package/docs/documentation/monitors_memory.js.html +0 -189
package/docs/documentation/parsers_nrrd.js.html +0 -569
package/docs/documentation/scripts/collapse.js +0 -20
package/docs/documentation/scripts/linenumber.js +0 -25
package/docs/documentation/scripts/nav.js +0 -12
package/docs/documentation/scripts/polyfill.js +0 -4
package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +0 -202
package/docs/documentation/scripts/prettify/lang-css.js +0 -2
package/docs/documentation/scripts/prettify/prettify.js +0 -28
package/docs/documentation/scripts/search.js +0 -83
package/docs/documentation/styles/jsdoc.css +0 -765
package/docs/documentation/styles/prettify.css +0 -80
package/docs/documentation/tools_contourTool.js.html +0 -1963
package/docs/documentation/tools_custom_contourTool.js.html +0 -1968
package/docs/documentation/tools_custom_diameterTool.js.html +0 -225
package/docs/documentation/tools_custom_editMaskTool.js.html +0 -225
package/docs/documentation/tools_custom_polylineScissorsTool.js.html +0 -143
package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +0 -245
package/docs/documentation/tools_default.js.html +0 -576
package/docs/documentation/tools_diameterTool.js.html +0 -219
package/docs/documentation/tools_editMaskTool.js.html +0 -219
package/docs/documentation/tools_interaction.js.html +0 -258
package/docs/documentation/tools_io.js.html +0 -297
package/docs/documentation/tools_main.js.html +0 -443
package/docs/documentation/tools_polygonSegmentationMixin.js.html +0 -329
package/docs/documentation/tools_polylineScissorsTool.js.html +0 -136
package/docs/documentation/tools_seedTool.js.html +0 -423
package/docs/documentation/tools_segmentation.js.html +0 -558
package/docs/documentation/tools_state.js.html +0 -163
package/docs/documentation/tools_strategies_eraseFreehand.js.html +0 -160
package/docs/documentation/tools_strategies_fillFreehand.js.html +0 -163
package/docs/documentation/tools_thresholdsBrushTool.js.html +0 -239
package/docs/documentation/tools_tools.default.js.html +0 -569
package/docs/documentation/tools_tools.interaction.js.html +0 -251
package/docs/documentation/tools_tools.io.js.html +0 -288
package/docs/documentation/tools_tools.main.js.html +0 -442
package/docs/documentation/tools_tools.segmentation.js.html +0 -445
package/docs/documentation/tools_tools.state.js.html +0 -157
package/docs/examples/base.html +0 -170
package/docs/examples/colorMaps.html +0 -181
package/docs/examples/defaultTools.html +0 -246
package/docs/examples/demo/anon1 +0 -0
package/docs/examples/demo/anon10 +0 -0
package/docs/examples/demo/anon11 +0 -0
package/docs/examples/demo/anon12 +0 -0
package/docs/examples/demo/anon13 +0 -0
package/docs/examples/demo/anon14 +0 -0
package/docs/examples/demo/anon15 +0 -0
package/docs/examples/demo/anon16 +0 -0
package/docs/examples/demo/anon17 +0 -0
package/docs/examples/demo/anon18 +0 -0
package/docs/examples/demo/anon19 +0 -0
package/docs/examples/demo/anon2 +0 -0
package/docs/examples/demo/anon20 +0 -0
package/docs/examples/demo/anon21 +0 -0
package/docs/examples/demo/anon22 +0 -0
package/docs/examples/demo/anon23 +0 -0
package/docs/examples/demo/anon24 +0 -0
package/docs/examples/demo/anon3 +0 -0
package/docs/examples/demo/anon4 +0 -0
package/docs/examples/demo/anon5 +0 -0
package/docs/examples/demo/anon6 +0 -0
package/docs/examples/demo/anon7 +0 -0
package/docs/examples/demo/anon8 +0 -0
package/docs/examples/demo/anon9 +0 -0
package/docs/examples/demo/example.nrrd +0 -0
package/docs/examples/demo/segmentation.nrrd +0 -0
package/docs/examples/demo/xa_integris.dcm +0 -0
package/docs/examples/index.html +0 -129
package/docs/examples/larvitar.js +0 -108623
package/docs/examples/layers.html +0 -250
package/docs/examples/masks.html +0 -273
package/docs/examples/multiframe.html +0 -200
package/docs/examples/nrrd.html +0 -96
package/docs/examples/reslice.html +0 -174
package/docs/index.html +0 -92

package/docs/documentation/image_tools.js.html DELETED Viewed

@@ -1,792 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
-<head>
-    <meta charset="utf-8">
-    <title>image_tools.js - Larvitar</title>
-    <meta name="description" content="Dicom Image Toolkit for CornestoneJS" />
-        <meta name="keywords" content="imaging, dataviz, medical, cornerstone" />
-        <meta name="keyword" content="imaging, dataviz, medical, cornerstone" />
-    <script src="scripts/prettify/prettify.js"></script>
-    <script src="scripts/prettify/lang-css.js"></script>
-    <!--[if lt IE 9]>
-      <script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
-    <![endif]-->
-    <link type="text/css" rel="stylesheet" href="styles/prettify.css">
-    <link type="text/css" rel="stylesheet" href="styles/jsdoc.css">
-    <script src="scripts/nav.js" defer></script>
-    <meta name="viewport" content="width=device-width, initial-scale=1.0">
-</head>
-<body>
-<input type="checkbox" id="nav-trigger" class="nav-trigger" />
-<label for="nav-trigger" class="navicon-button x">
-  <div class="navicon"></div>
-</label>
-<label for="nav-trigger" class="overlay"></label>
-<nav >
-    <input type="text" id="nav-search" placeholder="Search" />
-    <h2><a href="index.html">Home</a></h2><h2><a href="https://github.com/dvisionlab/Larvitar" target="_blank" class="menu-item" id="repository" >Github repo</a></h2><h3>Classes</h3><ul><li><a href="module.exports_module.exports.html">module.exports#module.exports</a></li><li><a href="module-imaging_store-Larvitar_Store.html">imaging/store~Larvitar_Store</a></li><li><a href="Tools.Annotation.ContoursTool.html">Tools.Annotation.ContoursTool</a></li><li><a href="Tools.Annotation.DiameterTool.html">Tools.Annotation.DiameterTool</a></li><li><a href="Tools.Brush.BrushTool.html">Tools.Brush.BrushTool</a></li><li><a href="Tools.Brush.ThresholdsBrushTool.html">Tools.Brush.ThresholdsBrushTool</a></li><li><a href="Tools.PolylineScissorsTool.html">Tools.PolylineScissorsTool</a></li></ul><h3>Modules</h3><ul><li><a href="module-imaging_anonymization.html">imaging/anonymization</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_anonymization.html#anonymize#~anonymize">anonymize</a></li><li data-type='method' style='display: none;'><a href="module-imaging_anonymization.html#encrypt#~encrypt">encrypt</a></li></ul></li><li><a href="module-imaging_contours.html">imaging/contours</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#extractSlicePoints#extractSlicePoints">extractSlicePoints</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#populateContoursObject#populateContoursObject">populateContoursObject</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#parseContours#~parseContours">parseContours</a></li></ul></li><li><a href="module-imaging_io.html">imaging/io</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildData#~buildData">buildData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildDataAsync#~buildDataAsync">buildDataAsync</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildHeader#~buildHeader">buildHeader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#getCachedPixelData#~getCachedPixelData">getCachedPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#importNRRDImage#~importNRRDImage">importNRRDImage</a></li></ul></li><li><a href="module-imaging_layers.html">imaging/layers</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#getActiveLayer#getActiveLayer">getActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#setActiveLayer#setActiveLayer">setActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#updateLayer#updateLayer">updateLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#buildLayers#~buildLayers">buildLayers</a></li></ul></li><li><a href="module-imaging_loading.html">imaging/loading</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeFileImageLoader#initializeFileImageLoader">initializeFileImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeImageLoader#initializeImageLoader">initializeImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeWebImageLoader#initializeWebImageLoader">initializeWebImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerMultiFrameImageLoader#registerMultiFrameImageLoader">registerMultiFrameImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerNRRDImageLoader#registerNRRDImageLoader">registerNRRDImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerResliceLoader#registerResliceLoader">registerResliceLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#updateLoadedStack#updateLoadedStack">updateLoadedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#isNewInstance#~isNewInstance">isNewInstance</a></li></ul></li><li><a href="module-imaging_parsing.html">imaging/parsing</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#clearImageParsing#clearImageParsing">clearImageParsing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpDataSet#dumpDataSet">dumpDataSet</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFile#readFile">readFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFiles#readFiles">readFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpFile#~dumpFile">dumpFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpFiles#~dumpFiles">dumpFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#parseNextFile#~parseNextFile">parseNextFile</a></li></ul></li><li><a href="module-imaging_presets.html">imaging/presets</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#getImagePresets#getImagePresets">getImagePresets</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImageCustomPreset#setImageCustomPreset">setImageCustomPreset</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImagePreset#setImagePreset">setImagePreset</a></li></ul></li><li><a href="module-imaging_rendering.html">imaging/rendering</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#HSVToRGB#.HSVToRGB">HSVToRGB</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#addColorMap#addColorMap">addColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#applyColorMap#applyColorMap">applyColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#clearImageCache#clearImageCache">clearImageCache</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#disableViewport#disableViewport">disableViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#fillPixelData#fillPixelData">fillPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#flipImageHorizontal#flipImageHorizontal">flipImageHorizontal</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#flipImageVertical#flipImageVertical">flipImageVertical</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getColormapsList#getColormapsList">getColormapsList</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getSeriesData#getSeriesData">getSeriesData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#invertImage#invertImage">invertImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#loadAndCacheImages#loadAndCacheImages">loadAndCacheImages</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderImage#renderImage">renderImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resetViewports#resetViewports">resetViewports</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resizeViewport#resizeViewport">resizeViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#rotateImageLeft#rotateImageLeft">rotateImageLeft</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#rotateImageRight#rotateImageRight">rotateImageRight</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#storeViewportData#storeViewportData">storeViewportData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#unloadViewport#unloadViewport">unloadViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateImage#updateImage">updateImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateViewportData#updateViewportData">updateViewportData</a></li></ul></li><li></li><li><a href="module-imaging_reslice.html">imaging/reslice</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_reslice.html#resliceSeries#resliceSeries">resliceSeries</a></li></ul></li><li><a href="module-imaging_store.html">imaging/store</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_store.html#.larvitar_store">larvitar_store</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_store.html#initLarvitarStore#.initLarvitarStore">initLarvitarStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#addSeriesIds#~addSeriesIds">addSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#addViewport#~addViewport">addViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#deleteViewport#~deleteViewport">deleteViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#disableVuex#~disableVuex">disableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#enableVuex#~enableVuex">enableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#get#~get">get</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#removeSeriesIds#~removeSeriesIds">removeSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#set#~set">set</a></li></ul></li><li><a href="module-imaging_tools.html">imaging/tools</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addContoursTool#~addContoursTool">addContoursTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addDiameterTool#~addDiameterTool">addDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addMaskEditingTool#~addMaskEditingTool">addMaskEditingTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addSeedsTool#~addSeedsTool">addSeedsTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addStackStateToElement#~addStackStateToElement">addStackStateToElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addToolStateSingleSlice#~addToolStateSingleSlice">addToolStateSingleSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearCornerstoneElements#~clearCornerstoneElements">clearCornerstoneElements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearMeasurements#~clearMeasurements">clearMeasurements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearToolStateByName#~clearToolStateByName">clearToolStateByName</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#getCurrentMaskData#~getCurrentMaskData">getCurrentMaskData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#getToolState#~getToolState">getToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setSegmentationConfig#~setSegmentationConfig">setSegmentationConfig</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#syncToolStack#~syncToolStack">syncToolStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#updateDiameterTool#~updateDiameterTool">updateDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#updateStackToolState#~updateStackToolState">updateStackToolState</a></li></ul></li><li><a href="module-imaging_utils.html">imaging/utils</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDate#formatDate">formatDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDateTime#formatDateTime">formatDateTime</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getCmprMetadata#getCmprMetadata">getCmprMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTag#getDICOMTag">getDICOMTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTagCode#getDICOMTagCode">getDICOMTagCode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDistanceBetweenSlices#getDistanceBetweenSlices">getDistanceBetweenSlices</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMaxPixelValue#getMaxPixelValue">getMaxPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMeanValue#getMeanValue">getMeanValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMinPixelValue#getMinPixelValue">getMinPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getNormalOrientation#getNormalOrientation">getNormalOrientation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelRepresentation#getPixelRepresentation">getPixelRepresentation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelTypedArray#getPixelTypedArray">getPixelTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIOP#getReslicedIOP">getReslicedIOP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIPP#getReslicedIPP">getReslicedIPP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedMetadata#getReslicedMetadata">getReslicedMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedPixeldata#getReslicedPixeldata">getReslicedPixeldata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedSliceLocation#getReslicedSliceLocation">getReslicedSliceLocation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedStack#getSortedStack">getSortedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedUIDs#getSortedUIDs">getSortedUIDs</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTagValue#getTagValue">getTagValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArray#getTypedArray">getTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArrayFromDataType#getTypedArrayFromDataType">getTypedArrayFromDataType</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isElement#isElement">isElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isNegativeSign#isNegativeSign">isNegativeSign</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isStringVr#isStringVr">isStringVr</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isValidDate#isValidDate">isValidDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseAgeTag#parseAgeTag">parseAgeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTag#parseDateTag">parseDateTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTimeTag#parseDateTimeTag">parseDateTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDICOMFileIDTag#parseDICOMFileIDTag">parseDICOMFileIDTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parsePatientNameTag#parsePatientNameTag">parsePatientNameTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTag#parseTag">parseTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTimeTag#parseTimeTag">parseTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteSignedArrays#permuteSignedArrays">permuteSignedArrays</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteValues#permuteValues">permuteValues</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#rand#rand">rand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#randomId#randomId">randomId</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#sortStackCallback#sortStackCallback">sortStackCallback</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#spacingArray#spacingArray">spacingArray</a></li></ul></li><li><a href="module-loaders_commonLoader.html">loaders/commonLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getImageFrame#getImageFrame">getImageFrame</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarImageTracker#getLarvitarImageTracker">getLarvitarImageTracker</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarManager#getLarvitarManager">getLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getSeriesDataFromLarvitarManager#getSeriesDataFromLarvitarManager">getSeriesDataFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#populateLarvitarManager#populateLarvitarManager">populateLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#removeSeriesFromLarvitarManager#removeSeriesFromLarvitarManager">removeSeriesFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#resetLarvitarManager#resetLarvitarManager">resetLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#updateLarvitarManager#updateLarvitarManager">updateLarvitarManager</a></li></ul></li><li><a href="module-loaders_dicomLoader.html">loaders/dicomLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#cacheImages#cacheImages">cacheImages</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getDicomImageId#getDicomImageId">getDicomImageId</a></li></ul></li><li><a href="module-loaders_fileLoader.html">loaders/fileLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#getFileImageId#getFileImageId">getFileImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#populateFileManager#populateFileManager">populateFileManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileLoader#resetFileLoader">resetFileLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileManager#resetFileManager">resetFileManager</a></li></ul></li><li><a href="module-loaders_nrrdLoader.html">loaders/nrrdLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#buildNrrdImage#buildNrrdImage">buildNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getImageIdFromSlice#getImageIdFromSlice">getImageIdFromSlice</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdImageId#getNrrdImageId">getNrrdImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdSerieDimensions#getNrrdSerieDimensions">getNrrdSerieDimensions</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSliceNumberFromImageId#getSliceNumberFromImageId">getSliceNumberFromImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#loadNrrdImage#loadNrrdImage">loadNrrdImage</a></li></ul></li><li><a href="module-loaders_resliceLoader.html">loaders/resliceLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#loadReslicedImage#loadReslicedImage">loadReslicedImage</a></li></ul></li><li><a href="module-monitors_memory.html">monitors/memory</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemoryAllocation#checkMemoryAllocation">checkMemoryAllocation</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemorySupport#checkMemorySupport">checkMemorySupport</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getAvailableMemory#getAvailableMemory">getAvailableMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getMB#getMB">getMB</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getUsedMemory#getUsedMemory">getUsedMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#setAvailableMemory#setAvailableMemory">setAvailableMemory</a></li></ul></li><li><a href="module-tools_default.html">tools/default</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-tools_default.html#getDefaultToolsByType#~getDefaultToolsByType">getDefaultToolsByType</a></li><li data-type='method' style='display: none;'><a href="module-tools_default.html#setDefaultToolsProps#~setDefaultToolsProps">setDefaultToolsProps</a></li></ul></li></ul><h3>Events</h3><ul><li><a href="ContoursTool.html#event:_drawingDoubleTapClickCallback">ContoursTool#_drawingDoubleTapClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDoubleClickCallback">ContoursTool#_drawingMouseDoubleClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDownCallback">ContoursTool#_drawingMouseDownCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDragCallback">ContoursTool#_drawingMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseMoveCallback">ContoursTool#_drawingMouseMoveCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseUpCallback">ContoursTool#_drawingMouseUpCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchDragCallback">ContoursTool#_drawingTouchDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchStartCallback">ContoursTool#_drawingTouchStartCallback</a></li><li><a href="ContoursTool.html#event:_editMouseDragCallback">ContoursTool#_editMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_editTouchDragCallback">ContoursTool#_editTouchDragCallback</a></li></ul><h3>Mixins</h3><ul><li><a href="Mixins.polygonSegmentationMixin%2520-%2520segmentation%2520operations%2520for%2520polyline.html">Mixins.polygonSegmentationMixin - segmentation operations for polyline</a></li></ul><h3>Global</h3><ul><li><a href="global.html#_checkIfDrawing">_checkIfDrawing</a></li><li><a href="global.html#_paint">_paint</a></li><li><a href="global.html#addDefaultTools">addDefaultTools</a></li><li><a href="global.html#addMouseKeyHandlers">addMouseKeyHandlers</a></li><li><a href="global.html#addSegmentationMask">addSegmentationMask</a></li><li><a href="global.html#addTool">addTool</a></li><li><a href="global.html#buildMultiFrameImage">buildMultiFrameImage</a></li><li><a href="global.html">clearMultiFrameCache</a></li><li><a href="global.html#clearSegmentationState">clearSegmentationState</a></li><li><a href="global.html#config">config</a></li><li><a href="global.html">createCustomImage</a></li><li><a href="global.html#csToolsCreateStack">csToolsCreateStack</a></li><li><a href="global.html#csToolsUpdateImageIndex">csToolsUpdateImageIndex</a></li><li><a href="global.html#deleteMask">deleteMask</a></li><li><a href="global.html#disableBrushTool">disableBrushTool</a></li><li><a href="global.html#download">download</a></li><li><a href="global.html#enableBrushTool">enableBrushTool</a></li><li><a href="global.html#eraseFreehand">eraseFreehand</a></li><li><a href="global.html#eraseInsideFreehand">eraseInsideFreehand</a></li><li><a href="global.html#eraseOutsideFreehand">eraseOutsideFreehand</a></li><li><a href="global.html#exportAnnotations">exportAnnotations</a></li><li><a href="global.html#extractToolInfo">extractToolInfo</a></li><li><a href="global.html#fillFreehand">fillFreehand</a></li><li><a href="global.html#fillInsideFreehand">fillInsideFreehand</a></li><li><a href="global.html#fillOutsideFreehand">fillOutsideFreehand</a></li><li><a href="global.html#forceRender">forceRender</a></li><li><a href="global.html#generateCSV">generateCSV</a></li><li><a href="global.html#generateLUT">generateLUT</a></li><li><a href="global.html#generateUniformLUT">generateUniformLUT</a></li><li><a href="global.html#getActiveLabelmapBuffer">getActiveLabelmapBuffer</a></li><li><a href="global.html#getCircleWithThreshold">getCircleWithThreshold</a></li><li><a href="global.html">getMultiFrameImageId</a></li><li><a href="global.html#HSVtoRGB">HSVtoRGB</a></li><li><a href="global.html#initializeCSTools">initializeCSTools</a></li><li><a href="global.html#initSegmentationModule">initSegmentationModule</a></li><li><a href="global.html#isDrawing">isDrawing</a></li><li><a href="global.html#isToolMissing">isToolMissing</a></li><li><a href="global.html#loadAnnotations">loadAnnotations</a></li><li><a href="global.html#loadMultiFrameImage">loadMultiFrameImage</a></li><li><a href="global.html#NRRD_TYPES_TO_TYPEDARRAY">NRRD_TYPES_TO_TYPEDARRAY</a></li><li><a href="global.html">parse</a></li><li><a href="global.html#redoLastStroke">redoLastStroke</a></li><li><a href="global.html#renderToolData">renderToolData</a></li><li><a href="global.html#restoreToolState">restoreToolState</a></li><li><a href="global.html#saveAnnotations">saveAnnotations</a></li><li><a href="global.html#saveToolState">saveToolState</a></li><li><a href="global.html#setActiveLabelmap">setActiveLabelmap</a></li><li><a href="global.html#setActiveLabelOpacity">setActiveLabelOpacity</a></li><li><a href="global.html#setActiveSegment">setActiveSegment</a></li><li><a href="global.html#setBrushProps">setBrushProps</a></li><li><a href="global.html#setInactiveLabelOpacity">setInactiveLabelOpacity</a></li><li><a href="global.html#setMaskProps">setMaskProps</a></li><li><a href="global.html">setPixelDataType</a></li><li><a href="global.html#setToolActive">setToolActive</a></li><li><a href="global.html#setToolDisabled">setToolDisabled</a></li><li><a href="global.html#setToolEnabled">setToolEnabled</a></li><li><a href="global.html#setToolPassive">setToolPassive</a></li><li><a href="global.html#setToolsStyle">setToolsStyle</a></li><li><a href="global.html#toggleContourMode">toggleContourMode</a></li><li><a href="global.html">toggleMouseHandlers</a></li><li><a href="global.html#tryUpdateImage">tryUpdateImage</a></li><li><a href="global.html#undoLastStroke">undoLastStroke</a></li></ul>
-</nav>
-<div id="main">
-    <h1 class="page-title">image_tools.js</h1>
-    <section>
-        <article>
-            <pre class="prettyprint source linenums"><code>/** @module imaging/tools
- *  @desc This file provides functionalities for
- *        interacting with cornerstone tools
- */
-// external libraries
-import cornerstone from "cornerstone-core";
-import cornerstoneTools from "cornerstone-tools";
-import { each, extend, filter, remove, cloneDeep } from "lodash";
-// internal libraries
-import { DEFAULT_TOOLS } from "./tools/tools.default";
-// import { SeedsTool } from "./tools/seedTool";
-import { ContoursTool } from "./tools/contourTool";
-import { EditMaskTool } from "./tools/editMaskTool";
-import { DiameterTool } from "./tools/diameterTool";
-import { getImageIdFromSlice } from "./loaders/nrrdLoader";
-import { getSeriesDataFromLarvitarManager } from "./loaders/commonLoader";
-import { parseContours } from "./image_contours";
-import { isElement } from "./image_utils";
-/*
- * This module provides the following functions to be exported:
- * csToolsCreateStack(element)
- * addDefaultTools()
- * clearMeasurements()
- * addContoursTool(rawContours, maskName)
- * addMaskEditingTool(seriesId,mask,setConfig,callback, targetViewport)
- * getCurrentMaskData(viewportId)
- * addStackStateToElement(seriesId, element)
- * addSeedsTool(preLoadSeeds, initViewport)
- * addDiameterTool(targetElementId, diameters, seriesId)
- * setToolActive(toolName, options, activeViewport, viewports)
- * setToolDisabled(toolName, options, activeViewport, viewports)
- * setToolEnabled(toolName, options, activeViewport, viewports)
- * setToolPassive(toolName, options, activeViewport, viewports)
- * getToolState(toolName)
- * updateDiameterTool(diameterId, value, seriesId)
- * addToolStateSingleSlice(element, toolType, data, slice, seriesId)
- * clearToolStateByName(toolName, options)
- * clearCornerstoneElements()
- * syncToolStack(srcSliceNumber, toolName, viewport, seriesId)
- * updateStackToolState(element, imageIndex)
- */
-/**
- * Add all default tools, as listed in tools.default.js
- * @function addDefaultTools
- * @deprecated (OBSOLETE)
- */
-export const addDefaultTools = function (toolToActivate, cb) {
-  // for each default tool
-  each(DEFAULT_TOOLS, tool => {
-    // check if already added
-    if (!isToolMissing(tool.name)) {
-      return;
-    }
-    let configuration = tool.configuration;
-    let toolClass = cornerstoneTools[tool.class];
-    // check target viewports and call add tool with options
-    if (tool.viewports == "all") {
-      cornerstoneTools.addTool(toolClass, { configuration });
-    } else {
-      // call add tool for element for each element
-      each(tool.viewports, targetElement => {
-        cornerstoneTools.addToolForElement(
-          targetElement,
-          toolClass,
-          configuration
-        );
-      });
-    }
-    let elements = cornerstone.getEnabledElements();
-    // if sync tool, enable
-    if (tool.sync) {
-      const synchronizer = new cornerstoneTools.Synchronizer(
-        "cornerstoneimagerendered",
-        cornerstoneTools[tool.sync]
-      );
-      elements.forEach(element => {
-        synchronizer.add(element.element);
-      });
-      synchronizer.enabled = true;
-    }
-    if (tool.defaultActive || tool.name == toolToActivate) {
-      setToolActive(tool.name, tool.options);
-    }
-  });
-  // set wheel scroll active
-  setToolActive("StackScrollMouseWheel", {
-    loop: false, // default false
-    allowSkipping: false, // default true
-    invert: false
-  });
-  if (cb) {
-    cb();
-  }
-};
-/**
- * Add Diameter tool
- * @function addDiameterTool
- * @param {String} elementId - The target hmtl element id or its DOM HTMLElement
- * @param {Array} diameters - The array of diameter objects.
- * @param {String} seriesId - The id of the target serie.
- */
-export const addDiameterTool = function (elementId, diameters, seriesId) {
-  if (isToolMissing("Diameter")) {
-    let element = isElement(elementId)
-      ? elementId
-      : document.getElementById(elementId);
-    cornerstoneTools.addToolForElement(element, DiameterTool, {
-      dataArray: diameters,
-      seriesId: seriesId
-    });
-    setToolPassive("Diameter");
-  }
-};
-/**
- * Add Contour tool
- * @function addContoursTool
- * @param {Object} rawContours - The contours object (generated from a segmentation mask).
- * @param {String} maskName - The name tag that identify the mask
- */
-export const addContoursTool = function (rawContours, maskName) {
-  var pointBatchSize = 2;
-  console.time("...parsing contours");
-  var contoursParsedData = parseContours(rawContours, pointBatchSize, maskName);
-  console.timeEnd("...parsing contours");
-  cornerstoneTools.addTool(ContoursTool, {
-    contoursParsedData,
-    maskName
-  });
-};
-/**
- * Add mask editing tool
- * @function addMaskEditingTool
- * @param {Array} mask - The mask data.
- * @param {String} targetViewport - The target hmtl element id.
- * @param {Function} callback - The tool initialization callback
- */
-export const addMaskEditingTool = function (mask, callback, targetViewport) {
-  let enabledElements = cornerstone.getEnabledElements();
-  each(enabledElements, el => {
-    if (el.element.id == targetViewport) {
-      cornerstoneTools.addToolForElement(el.element, EditMaskTool, {
-        mask: mask,
-        initCallback: callback,
-        configuration: { alwaysEraseOnClick: false }
-      });
-      cornerstoneTools.setToolEnabledForElement(el.element, "EditMask", {
-        mouseButtonMask: 1
-      });
-    }
-  });
-  let defaultConfig = {
-    radius: 5,
-    fillAlpha: 0.5
-  };
-  setSegmentationConfig(defaultConfig);
-};
-/**
- * Modify configuration for cornerstone tools segmentation module
- * @function setSegmentationConfig
- * @param {Object} config - The custom configuration.
- * @example
- * Example of custom configuration
- * config = {
-      renderOutline: true,
-      renderFill: true,
-      shouldRenderInactiveLabelmaps: true,
-      radius: 10,
-      minRadius: 1,
-      maxRadius: 50,
-      segmentsPerLabelmap: 65535,
-      fillAlpha: 0.7,
-      fillAlphaInactive: 0.1,
-      outlineAlpha: 0.7,
-      outlineAlphaInactive: 0.35,
-      outlineWidth: 3,
-      storeHistory: true
-    };
- */
-export const setSegmentationConfig = function (config) {
-  let { configuration } = cornerstoneTools.getModule("segmentation");
-  extend(configuration, config);
-  let enabledElements = cornerstone.getEnabledElements();
-  each(enabledElements, el => {
-    cornerstone.updateImage(el.element);
-  });
-};
-/**
- * Get mask editing tool current data from state
- * @function getCurrentMaskData
- * @param {String} viewportId - The target hmtl element id.
- * @return {Array} labelmap3D - The mask array
- */
-export const getCurrentMaskData = function (viewportId) {
-  const { getters } = cornerstoneTools.getModule("segmentation");
-  let enabledElement = cornerstone
-    .getEnabledElements()
-    .filter(e => e.element.id == viewportId)
-    .pop();
-  const { labelmap3D } = getters.labelmap2D(enabledElement.element);
-  return labelmap3D;
-};
-/**
- * Add Stack State to a single hmtl element
- * @function addStackStateToElement
- * @param {String} seriesId - The id of the target serie.
- * @param {HTMLElement} element - The target hmtl element.
- */
-export const addStackStateToElement = function (seriesId, element) {
-  // Define the Stack object
-  const stack = getSeriesDataFromLarvitarManager(seriesId)[element.id];
-  // Add the stack tool state to the enabled element
-  cornerstoneTools.addStackStateManager(element, ["stack"]);
-  cornerstoneTools.addToolState(element, "stack", stack);
-};
-/**
- * Add seeds tool
- * @function addSeedsTool
- * @param {Array} preLoadSeeds - The array of seeds to load as initialization.
- * @param {String} initViewport - The hmtl element id to be used for tool initialization.
- */
-export const addSeedsTool = function (preLoadSeeds, initViewport) {
-  if (isToolMissing("Seeds")) {
-    let enabledElements = cornerstone.getEnabledElements();
-    each(enabledElements, el => {
-      let initialize = el.element.id == initViewport;
-      cornerstoneTools.addToolForElement(el.element, SeedsTool, {
-        preLoadSeeds,
-        initialize,
-        initViewport
-      });
-    });
-    setToolEnabled("Seeds");
-  }
-};
-/**
- * Delete all measurements from tools state, for tools that have the "cleaneable" prop set to true in tools.default.js
- * @function clearMeasurements
- */
-export const clearMeasurements = function (cb) {
-  let enabledElements = cornerstone.getEnabledElements();
-  let clenableTools = filter(DEFAULT_TOOLS, "cleanable");
-  each(enabledElements, el => {
-    each(clenableTools, function (tool) {
-      cornerstoneTools.clearToolState(el.element, tool.name);
-    });
-  });
-  each(enabledElements, el => {
-    cornerstone.updateImage(el.element);
-  });
-  if (cb) {
-    cb();
-  }
-};
-/**
- * Set Tool "active" on all elements (ie, rendered and manipulable) &amp; refresh cornerstone elements
- * @function setToolActive
- * @param {String} toolName - The tool name.
- * @param {Object} options - The custom options. @default from tools.default.js
- * @param {String} activeViewport - The active viewport (if "all", viewports array will be used)
- * @param {Array} viewports - The hmtl element id to be used for tool initialization.
- */
-export const setToolActive = function (
-  toolName,
-  options,
-  activeViewport,
-  viewports
-) {
-  let defaultOpt = DEFAULT_TOOLS[toolName].options;
-  extend(defaultOpt, options);
-  cornerstoneTools.setToolActive(toolName, defaultOpt);
-  if (activeViewport == "all") {
-    each(viewports, function (elementId) {
-      let el = document.getElementById(elementId);
-      if (el) {
-        cornerstone.updateImage(el);
-      }
-    });
-  } else {
-    let el = document.getElementById(activeViewport);
-    if (el) {
-      cornerstone.updateImage(el);
-    }
-  }
-};
-/**
- * Set Tool "disabled" on all elements (ie, not rendered) &amp; refresh cornerstone elements
- * @function setToolActive
- * @param {String} toolName - The tool name.
- * @param {String} activeViewport - The active viewport (if "all", viewports array will be used)
- * @param {Array} viewports - The hmtl element id to be used for tool initialization.
- */
-export const setToolDisabled = function (toolName, activeViewport, viewports) {
-  cornerstoneTools.setToolDisabled(toolName);
-  if (activeViewport == "all") {
-    each(viewports, function (elementId) {
-      let el = document.getElementById(elementId);
-      if (el) {
-        cornerstone.updateImage(el);
-      }
-    });
-  } else {
-    let el = document.getElementById(activeViewport);
-    if (el) {
-      cornerstone.updateImage(el);
-    }
-  }
-};
-/**
- * Set Tool "enabled" on all elements (ie, rendered but not manipulable) &amp; refresh cornerstone elements
- * @function setToolEnabled
- * @param {String} toolName - The tool name.
- * @param {String} activeViewport - The active viewport (if "all", viewports array will be used)
- * @param {Array} viewports - The hmtl element id to be used for tool initialization.
- */
-export const setToolEnabled = function (toolName, activeViewport, viewports) {
-  cornerstoneTools.setToolEnabled(toolName);
-  if (activeViewport == "all") {
-    each(viewports, function (elementId) {
-      let el = document.getElementById(elementId);
-      if (el) {
-        cornerstone.updateImage(el);
-      }
-    });
-  } else {
-    let el = document.getElementById(activeViewport);
-    if (el) {
-      cornerstone.updateImage(el);
-    }
-  }
-};
-/**
- * Set Tool "enabled" on all elements (ie, rendered and manipulable passively) &amp; refresh cornerstone elements
- * @function setToolPassive
- * @param {String} toolName - The tool name.
- * @param {String} activeViewport - The active viewport (if "all", viewports array will be used)
- * @param {Array} viewports - The hmtl element id to be used for tool initialization.
- */
-export const setToolPassive = function (toolName, activeViewport, viewports) {
-  cornerstoneTools.setToolPassive(toolName);
-  if (activeViewport == "all") {
-    each(viewports, function (elementId) {
-      let el = document.getElementById(elementId);
-      if (el) {
-        cornerstone.updateImage(el);
-      }
-    });
-  } else {
-    let el = document.getElementById(activeViewport);
-    if (el) {
-      cornerstone.updateImage(el);
-    }
-  }
-};
-/**
- * Get tool data for all enabled elements
- * @function getToolState
- * @param {String} toolName - The tool name.
- * @return {Object} - Tool data grouped by element id
- */
-export const getToolState = function (toolName) {
-  let enabledElements = cornerstone.getEnabledElements();
-  let toolData = {};
-  each(enabledElements, el => {
-    toolData[el.element.id] = cornerstoneTools.getToolState(
-      el.element,
-      toolName
-    );
-  });
-  return toolData;
-};
-/**
- * Clear tool data for a subset of seeds
- * @function clearToolStateByName
- * @param {String} toolName - The tool name.
- * @param {Object} options - Props used to select the data to delete (at the moment only {name : "targetName"} is implemented)
- */
-export const clearToolStateByName = function (toolName, options) {
-  let enabledElements = cornerstone.getEnabledElements();
-  each(enabledElements, el => {
-    const toolStateManager = el.toolStateManager;
-    let imageIds = Object.keys(toolStateManager.toolState);
-    each(imageIds, imageId => {
-      let toolData = toolStateManager.toolState[imageId];
-      if (toolData[toolName]) {
-        remove(toolData[toolName].data, singleData => {
-          return singleData.name == options.name;
-        });
-      }
-    });
-  });
-  each(enabledElements, el => {
-    cornerstone.updateImage(el.element);
-  });
-};
-/**
- * Update diameter tool with new value (removing old one)
- * @function updateDiameterTool
- * @param {String | Number} diameterId - The id that identify the diameter data.
- * @param {Object} value - The object representing the new diameter data.
- * @param {String} seriesId - The target serie id.
- * @param {String} viewportId - The viewport id.
- */
-export const updateDiameterTool = function (
-  diameterId,
-  value,
-  seriesId,
-  viewportId
-) {
-  // clear target diameter
-  if (!diameterId) {
-    console.warn("no diameterId, return");
-    return;
-  }
-  clearToolStateByName("Diameter", {
-    name: diameterId
-  });
-  // insert new one
-  let data = {
-    toolType: "Diameter",
-    name: diameterId,
-    isCreating: true,
-    visible: true,
-    active: false,
-    invalidated: false,
-    handles: {
-      start: {
-        x: value.tool.x1,
-        y: value.tool.y1,
-        index: 0,
-        drawnIndependently: false,
-        allowedOutsideImage: false,
-        highlight: true,
-        active: false
-      },
-      end: {
-        x: value.tool.x2,
-        y: value.tool.y2,
-        index: 1,
-        drawnIndependently: false,
-        allowedOutsideImage: false,
-        highlight: true,
-        active: false
-      },
-      perpendicularStart: {
-        x: value.tool.x3,
-        y: value.tool.y3,
-        index: 2,
-        drawnIndependently: false,
-        allowedOutsideImage: false,
-        highlight: true,
-        active: false,
-        locked: false
-      },
-      perpendicularEnd: {
-        x: value.tool.x4,
-        y: value.tool.y4,
-        index: 3,
-        drawnIndependently: false,
-        allowedOutsideImage: false,
-        highlight: true,
-        active: false
-      },
-      textBox: {
-        x: value.tool.value_max,
-        y: value.tool.value_min,
-        index: null,
-        drawnIndependently: true,
-        allowedOutsideImage: true,
-        highlight: false,
-        active: false,
-        hasMoved: true,
-        movesIndependently: false,
-        hasBoundingBox: true,
-        boundingBox: {
-          width: 59.6484375,
-          height: 47,
-          left: 165.02487562189057,
-          top: 240.53482587064684
-        }
-      }
-    },
-    longestDiameter: value.tool.value_max.toString(),
-    shortestDiameter: value.tool.value_min.toString()
-  };
-  let sliceNumber = value.tool.slice;
-  let enabledElement = cornerstone
-    .getEnabledElements()
-    .filter(el => el.element.id == viewportId)
-    .pop();
-  // add to master viewport
-  addToolStateSingleSlice(
-    enabledElement.element,
-    "Diameter",
-    data,
-    sliceNumber,
-    seriesId
-  );
-};
-/**
- * Add tool data for a single target slice
- * @function addToolStateSingleSlice
- * @param {HTMLElement} element - The target hmtl element.
- * @param {String} toolName - The tool name.
- * @param {Object | Array} data - The tool data to add (tool-specific)
- * @param {Number} slice - The target slice to put the data in.
- * @param {String} seriesId - The target serie id.
- */
-export const addToolStateSingleSlice = function (
-  element,
-  toolName,
-  data,
-  slice,
-  seriesId
-) {
-  const enabledElement = cornerstone.getEnabledElement(element);
-  if (!enabledElement.image) {
-    console.warn("no image");
-    return;
-  }
-  let targetImageId = getImageIdFromSlice(slice, element.id, seriesId);
-  if (enabledElement.toolStateManager === undefined) {
-    console.warn("State Manager undefined");
-    return;
-  }
-  let toolState = enabledElement.toolStateManager.toolState;
-  if (toolState.hasOwnProperty(targetImageId) === false) {
-    toolState[targetImageId] = {};
-  }
-  const imageIdToolState = toolState[targetImageId];
-  // If we don't have tool state for this type of tool, add an empty object
-  if (imageIdToolState.hasOwnProperty(toolName) === false) {
-    imageIdToolState[toolName] = {
-      data: []
-    };
-  }
-  const toolData = imageIdToolState[toolName];
-  // if an array is provided, override data
-  // if (Array.isArray(data)) {
-  //   toolData.data = data;
-  // } else {
-  //   toolData.data.push(data);
-  // }
-  // This implementation works better
-  let singledata = typeof data.pop == "function" ? data.pop() : data;
-  // remove old data for this id (avoid doubling contours) // TODO generalize
-  if (toolName == "ContoursTool") {
-    remove(toolData.data, entry => entry &amp;&amp; entry.id == singledata.id);
-  }
-  toolData.data.push(singledata);
-};
-/**
- * Clear tool state and disable all cornerstone elements
- * @function clearCornerstoneElements
- */
-export const clearCornerstoneElements = function () {
-  var enabledElements = cornerstone.getEnabledElements();
-  var inMemElements = cloneDeep(enabledElements); // copy before modifying
-  each(inMemElements, el => {
-    each(DEFAULT_TOOLS, function (tool) {
-      if (tool.cleanable) {
-        cornerstoneTools.clearToolState(el.element, tool.name);
-      }
-    });
-    cornerstone.disable(el.element);
-  });
-};
-/**
- * Sync the cornerstone tools stack given a slice as data source
- * @function syncToolStack
- * @param {Number} srcSliceNumber - The slice to be used as data source.
- * @param {String} toolName - The name of the tool to sync.
- * @param {String} viewport - The target viewport id.
- * @param {String} seriesId - The target serie id.
- */
-export const syncToolStack = function (
-  srcSliceNumber,
-  toolName,
-  viewport,
-  seriesId
-) {
-  // get the imageIds array
-  let seriesData = getSeriesDataFromLarvitarManager(seriesId);
-  let imageIds = seriesData[viewport].imageIds;
-  // get the tool state of source imageId
-  let element = document.getElementById(viewport);
-  let enabledElement = cornerstone.getEnabledElement(element);
-  let srcImageId = getImageIdFromSlice(srcSliceNumber, viewport, seriesId);
-  let srcImageToolState =
-    enabledElement.toolStateManager.toolState[srcImageId][toolName];
-  each(Object.keys(imageIds), sliceNumber => {
-    if (sliceNumber == srcSliceNumber) {
-      return;
-    }
-    each(srcImageToolState, data => {
-      addToolStateSingleSlice(element, toolName, data, sliceNumber, seriesId);
-    });
-  });
-};
-/**
- * Update slice index in cornerstone tools stack state
- * @function updateStackToolState
- * @param {String} elementId - The html div id used for rendering or its DOM HTMLElement
- * @param {Number} imageIndex - The new imageIndex value.
- */
-export const updateStackToolState = function (elementId, imageIndex) {
-  let element = isElement(elementId)
-    ? elementId
-    : document.getElementById(elementId);
-  if (!element) {
-    console.error("invalid html element: " + elementId);
-    return;
-  }
-  let enabledElement = cornerstone.getEnabledElement(element);
-  if (!enabledElement.toolStateManager) {
-    return;
-  }
-  let stackState = enabledElement.toolStateManager.toolState["stack"];
-  if (!stackState) {
-    return;
-  }
-  // READY for different segmentations data (data[segmentation_label_id])
-  stackState.data[0].currentImageIdIndex = imageIndex;
-};
-/** @inner Internal module functions */
-/**
- * Check if a tool has already been added
- * @function isToolMissing
- * @param {String} toolName - The tool name.
- * @param {Array} _viewports - The viewports to check.
- */
-const isToolMissing = function (toolName, _viewports) {
-  let isToolMissing = false;
-  if (_viewports) {
-    each(_viewports, function (viewport) {
-      let element = cornerstone.getEnabledElement(
-        document.getElementById(viewport)
-      );
-      let added = cornerstoneTools.getToolForElement(element, toolName);
-      if (added === undefined) {
-        isToolMissing = true;
-      }
-    });
-  } else {
-    let elements = cornerstone.getEnabledElements();
-    each(elements, function (element) {
-      let added = cornerstoneTools.getToolForElement(element, toolName);
-      if (added === undefined) {
-        isToolMissing = true;
-      }
-    });
-  }
-  return isToolMissing;
-};
-</code></pre>
-        </article>
-    </section>
-</div>
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