larvitar 1.2.0 → 1.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.github/workflows/build-docs.yml +1 -1
- package/.github/workflows/deploy.yml +4 -4
- package/README.md +3 -3
- package/modules/vuex/larvitar.js +1 -0
- package/package.json +1 -1
- package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +0 -171
- package/docs/documentation/Tools.Annotation.ContoursTool.html +0 -218
- package/docs/documentation/Tools.Annotation.DiameterTool.html +0 -219
- package/docs/documentation/Tools.Annotation.SeedsTool.html +0 -214
- package/docs/documentation/Tools.Brush.BrushTool.html +0 -218
- package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +0 -218
- package/docs/documentation/Tools.PolylineScissorsTool.html +0 -218
- package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
- package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
- package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
- package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff2 +0 -0
- package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
- package/docs/documentation/fonts/Montserrat/Montserrat-Regular.ttf +0 -0
- package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff +0 -0
- package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff2 +0 -0
- package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
- package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +0 -978
- package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
- package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff +0 -0
- package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
- package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
- package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +0 -1049
- package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
- package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
- package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
- package/docs/documentation/global.html +0 -1303
- package/docs/documentation/imageAnonymization.js.html +0 -245
- package/docs/documentation/imageColormaps.js.html +0 -283
- package/docs/documentation/imageContours.js.html +0 -278
- package/docs/documentation/imageIo.js.html +0 -291
- package/docs/documentation/imageLayers.js.html +0 -188
- package/docs/documentation/imageLoading.js.html +0 -297
- package/docs/documentation/imageParsing.js.html +0 -385
- package/docs/documentation/imagePresets.js.html +0 -207
- package/docs/documentation/imageRendering.js.html +0 -849
- package/docs/documentation/imageReslice.js.html +0 -162
- package/docs/documentation/imageStore.js.html +0 -360
- package/docs/documentation/imageTools.js.html +0 -784
- package/docs/documentation/imageUtils.js.html +0 -1609
- package/docs/documentation/image_colormaps.js.html +0 -283
- package/docs/documentation/image_contours.js.html +0 -279
- package/docs/documentation/image_io.js.html +0 -288
- package/docs/documentation/image_layers.js.html +0 -188
- package/docs/documentation/image_loading.js.html +0 -294
- package/docs/documentation/image_parsing.js.html +0 -391
- package/docs/documentation/image_presets.js.html +0 -207
- package/docs/documentation/image_rendering.js.html +0 -845
- package/docs/documentation/image_reslice.js.html +0 -164
- package/docs/documentation/image_store.js.html +0 -359
- package/docs/documentation/image_tools.js.html +0 -792
- package/docs/documentation/image_utils.js.html +0 -1609
- package/docs/documentation/index.html +0 -175
- package/docs/documentation/loaders_commonLoader.js.html +0 -306
- package/docs/documentation/loaders_dicomLoader.js.html +0 -130
- package/docs/documentation/loaders_fileLoader.js.html +0 -155
- package/docs/documentation/loaders_multiframeLoader.js.html +0 -443
- package/docs/documentation/loaders_niftiLoader.js.html +0 -150
- package/docs/documentation/loaders_nrrdLoader.js.html +0 -545
- package/docs/documentation/loaders_resliceLoader.js.html +0 -258
- package/docs/documentation/module-imaging_contours.html +0 -954
- package/docs/documentation/module-imaging_imageAnonymization.html +0 -544
- package/docs/documentation/module-imaging_imageColormaps.html +0 -1012
- package/docs/documentation/module-imaging_imageContours.html +0 -954
- package/docs/documentation/module-imaging_imageIo.html +0 -1057
- package/docs/documentation/module-imaging_imageLayers.html +0 -904
- package/docs/documentation/module-imaging_imageLoading.html +0 -1301
- package/docs/documentation/module-imaging_imageParsing.html +0 -1356
- package/docs/documentation/module-imaging_imagePresets.html +0 -679
- package/docs/documentation/module-imaging_imageRendering.html +0 -3223
- package/docs/documentation/module-imaging_imageReslice.html +0 -413
- package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +0 -284
- package/docs/documentation/module-imaging_imageStore.html +0 -1560
- package/docs/documentation/module-imaging_imageTools.html +0 -3617
- package/docs/documentation/module-imaging_imageUtils.html +0 -7253
- package/docs/documentation/module-imaging_io.html +0 -1057
- package/docs/documentation/module-imaging_layers.html +0 -904
- package/docs/documentation/module-imaging_loading.html +0 -1301
- package/docs/documentation/module-imaging_parsing.html +0 -1375
- package/docs/documentation/module-imaging_presets.html +0 -679
- package/docs/documentation/module-imaging_rendering.html +0 -8094
- package/docs/documentation/module-imaging_reslice.html +0 -411
- package/docs/documentation/module-imaging_store-Larvitar_Store.html +0 -284
- package/docs/documentation/module-imaging_store.html +0 -1537
- package/docs/documentation/module-imaging_strategies_eraseFreehand.html +0 -708
- package/docs/documentation/module-imaging_strategies_fillFreehand.html +0 -708
- package/docs/documentation/module-imaging_tools.html +0 -3617
- package/docs/documentation/module-imaging_tools_custom_contourTool.html +0 -207
- package/docs/documentation/module-imaging_tools_custom_diameterTool.html +0 -205
- package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +0 -205
- package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +0 -203
- package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +0 -684
- package/docs/documentation/module-imaging_tools_default.html +0 -205
- package/docs/documentation/module-imaging_tools_interaction.html +0 -530
- package/docs/documentation/module-imaging_tools_io.html +0 -832
- package/docs/documentation/module-imaging_tools_main.html +0 -2028
- package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +0 -567
- package/docs/documentation/module-imaging_tools_segmentation.html +0 -3586
- package/docs/documentation/module-imaging_tools_state.html +0 -494
- package/docs/documentation/module-imaging_utils.html +0 -7253
- package/docs/documentation/module-loaders_commonLoader.html +0 -1313
- package/docs/documentation/module-loaders_dicomLoader.html +0 -522
- package/docs/documentation/module-loaders_fileLoader.html +0 -593
- package/docs/documentation/module-loaders_multiframeLoader.html +0 -1169
- package/docs/documentation/module-loaders_niftiLoader.html +0 -565
- package/docs/documentation/module-loaders_nrrdLoader.html +0 -1459
- package/docs/documentation/module-loaders_resliceLoader.html +0 -590
- package/docs/documentation/module-monitors_memory.html +0 -980
- package/docs/documentation/module-tools_default.html +0 -740
- package/docs/documentation/module.exports_module.exports.html +0 -203
- package/docs/documentation/monitors_memory.js.html +0 -189
- package/docs/documentation/parsers_nrrd.js.html +0 -569
- package/docs/documentation/scripts/collapse.js +0 -20
- package/docs/documentation/scripts/linenumber.js +0 -25
- package/docs/documentation/scripts/nav.js +0 -12
- package/docs/documentation/scripts/polyfill.js +0 -4
- package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +0 -202
- package/docs/documentation/scripts/prettify/lang-css.js +0 -2
- package/docs/documentation/scripts/prettify/prettify.js +0 -28
- package/docs/documentation/scripts/search.js +0 -83
- package/docs/documentation/styles/jsdoc.css +0 -765
- package/docs/documentation/styles/prettify.css +0 -80
- package/docs/documentation/tools_contourTool.js.html +0 -1963
- package/docs/documentation/tools_custom_contourTool.js.html +0 -1968
- package/docs/documentation/tools_custom_diameterTool.js.html +0 -225
- package/docs/documentation/tools_custom_editMaskTool.js.html +0 -225
- package/docs/documentation/tools_custom_polylineScissorsTool.js.html +0 -143
- package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +0 -245
- package/docs/documentation/tools_default.js.html +0 -576
- package/docs/documentation/tools_diameterTool.js.html +0 -219
- package/docs/documentation/tools_editMaskTool.js.html +0 -219
- package/docs/documentation/tools_interaction.js.html +0 -258
- package/docs/documentation/tools_io.js.html +0 -297
- package/docs/documentation/tools_main.js.html +0 -443
- package/docs/documentation/tools_polygonSegmentationMixin.js.html +0 -329
- package/docs/documentation/tools_polylineScissorsTool.js.html +0 -136
- package/docs/documentation/tools_seedTool.js.html +0 -423
- package/docs/documentation/tools_segmentation.js.html +0 -558
- package/docs/documentation/tools_state.js.html +0 -163
- package/docs/documentation/tools_strategies_eraseFreehand.js.html +0 -160
- package/docs/documentation/tools_strategies_fillFreehand.js.html +0 -163
- package/docs/documentation/tools_thresholdsBrushTool.js.html +0 -239
- package/docs/documentation/tools_tools.default.js.html +0 -569
- package/docs/documentation/tools_tools.interaction.js.html +0 -251
- package/docs/documentation/tools_tools.io.js.html +0 -288
- package/docs/documentation/tools_tools.main.js.html +0 -442
- package/docs/documentation/tools_tools.segmentation.js.html +0 -445
- package/docs/documentation/tools_tools.state.js.html +0 -157
- package/docs/examples/base.html +0 -170
- package/docs/examples/colorMaps.html +0 -181
- package/docs/examples/defaultTools.html +0 -246
- package/docs/examples/demo/anon1 +0 -0
- package/docs/examples/demo/anon10 +0 -0
- package/docs/examples/demo/anon11 +0 -0
- package/docs/examples/demo/anon12 +0 -0
- package/docs/examples/demo/anon13 +0 -0
- package/docs/examples/demo/anon14 +0 -0
- package/docs/examples/demo/anon15 +0 -0
- package/docs/examples/demo/anon16 +0 -0
- package/docs/examples/demo/anon17 +0 -0
- package/docs/examples/demo/anon18 +0 -0
- package/docs/examples/demo/anon19 +0 -0
- package/docs/examples/demo/anon2 +0 -0
- package/docs/examples/demo/anon20 +0 -0
- package/docs/examples/demo/anon21 +0 -0
- package/docs/examples/demo/anon22 +0 -0
- package/docs/examples/demo/anon23 +0 -0
- package/docs/examples/demo/anon24 +0 -0
- package/docs/examples/demo/anon3 +0 -0
- package/docs/examples/demo/anon4 +0 -0
- package/docs/examples/demo/anon5 +0 -0
- package/docs/examples/demo/anon6 +0 -0
- package/docs/examples/demo/anon7 +0 -0
- package/docs/examples/demo/anon8 +0 -0
- package/docs/examples/demo/anon9 +0 -0
- package/docs/examples/demo/example.nrrd +0 -0
- package/docs/examples/demo/segmentation.nrrd +0 -0
- package/docs/examples/demo/xa_integris.dcm +0 -0
- package/docs/examples/index.html +0 -129
- package/docs/examples/larvitar.js +0 -108623
- package/docs/examples/layers.html +0 -250
- package/docs/examples/masks.html +0 -273
- package/docs/examples/multiframe.html +0 -200
- package/docs/examples/nrrd.html +0 -96
- package/docs/examples/reslice.html +0 -174
- package/docs/index.html +0 -92
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<h2><a href="index.html">Home</a></h2><h2><a href="https://github.com/dvisionlab/Larvitar" target="_blank" class="menu-item" id="repository" >Github repo</a></h2><h3>Classes</h3><ul><li><a href="module-imaging_imageStore-Larvitar_Store.html">imaging/imageStore~Larvitar_Store</a></li><li><a href="module-imaging_tools_custom_polygonScissorsTool.html">imaging/tools/custom/polygonScissorsTool</a></li><li><a href="Tools.Annotation.ContoursTool.html">Tools.Annotation.ContoursTool</a></li><li><a href="Tools.Annotation.DiameterTool.html">Tools.Annotation.DiameterTool</a></li><li><a href="Tools.Brush.BrushTool.html">Tools.Brush.BrushTool</a></li><li><a href="Tools.Brush.ThresholdsBrushTool.html">Tools.Brush.ThresholdsBrushTool</a></li><li><a href="Tools.PolylineScissorsTool.html">Tools.PolylineScissorsTool</a></li></ul><h3>Modules</h3><ul><li><a href="module-imaging_imageAnonymization.html">imaging/imageAnonymization</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageAnonymization.html#anonymize#~anonymize">anonymize</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageAnonymization.html#encrypt#~encrypt">encrypt</a></li></ul></li><li><a href="module-imaging_imageColormaps.html">imaging/imageColormaps</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#HSVToRGB#.HSVToRGB">HSVToRGB</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#addColorMap#addColorMap">addColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#applyColorMap#applyColorMap">applyColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#fillPixelData#fillPixelData">fillPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageColormaps.html#getColormapsList#getColormapsList">getColormapsList</a></li></ul></li><li><a href="module-imaging_imageContours.html">imaging/imageContours</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageContours.html#extractSlicePoints#extractSlicePoints">extractSlicePoints</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageContours.html#populateContoursObject#populateContoursObject">populateContoursObject</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageContours.html#parseContours#~parseContours">parseContours</a></li></ul></li><li><a href="module-imaging_imageIo.html">imaging/imageIo</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#buildData#~buildData">buildData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#buildDataAsync#~buildDataAsync">buildDataAsync</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#buildHeader#~buildHeader">buildHeader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#getCachedPixelData#~getCachedPixelData">getCachedPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageIo.html#importNRRDImage#~importNRRDImage">importNRRDImage</a></li></ul></li><li><a href="module-imaging_imageLayers.html">imaging/imageLayers</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#getActiveLayer#getActiveLayer">getActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#setActiveLayer#setActiveLayer">setActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#updateLayer#updateLayer">updateLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLayers.html#buildLayers#~buildLayers">buildLayers</a></li></ul></li><li><a href="module-imaging_imageLoading.html">imaging/imageLoading</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#initializeFileImageLoader#initializeFileImageLoader">initializeFileImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#initializeImageLoader#initializeImageLoader">initializeImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#initializeWebImageLoader#initializeWebImageLoader">initializeWebImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#registerMultiFrameImageLoader#registerMultiFrameImageLoader">registerMultiFrameImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#registerNRRDImageLoader#registerNRRDImageLoader">registerNRRDImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#registerResliceLoader#registerResliceLoader">registerResliceLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#updateLoadedStack#updateLoadedStack">updateLoadedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageLoading.html#isNewInstance#~isNewInstance">isNewInstance</a></li></ul></li><li><a href="module-imaging_imageParsing.html">imaging/imageParsing</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#clearImageParsing#clearImageParsing">clearImageParsing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseDataSet#parseDataSet">parseDataSet</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#readFile#readFile">readFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#readFiles#readFiles">readFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseFile#~parseFile">parseFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseFiles#~parseFiles">parseFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageParsing.html#parseNextFile#~parseNextFile">parseNextFile</a></li></ul></li><li><a href="module-imaging_imagePresets.html">imaging/imagePresets</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imagePresets.html#getImagePresets#getImagePresets">getImagePresets</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imagePresets.html#setImageCustomPreset#setImageCustomPreset">setImageCustomPreset</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imagePresets.html#setImagePreset#setImagePreset">setImagePreset</a></li></ul></li><li><a href="module-imaging_imageRendering.html">imaging/imageRendering</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#clearImageCache#clearImageCache">clearImageCache</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#disableViewport#disableViewport">disableViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#flipImageHorizontal#flipImageHorizontal">flipImageHorizontal</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#flipImageVertical#flipImageVertical">flipImageVertical</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#getSeriesData#getSeriesData">getSeriesData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#invertImage#invertImage">invertImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#loadAndCacheImages#loadAndCacheImages">loadAndCacheImages</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#renderImage#renderImage">renderImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#resetViewports#resetViewports">resetViewports</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#resizeViewport#resizeViewport">resizeViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#rotateImageLeft#rotateImageLeft">rotateImageLeft</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#rotateImageRight#rotateImageRight">rotateImageRight</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#storeViewportData#storeViewportData">storeViewportData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#unloadViewport#unloadViewport">unloadViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#updateImage#updateImage">updateImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageRendering.html#updateViewportData#updateViewportData">updateViewportData</a></li></ul></li><li><a href="module-imaging_imageReslice.html">imaging/imageReslice</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageReslice.html#resliceSeries#resliceSeries">resliceSeries</a></li></ul></li><li><a href="module-imaging_imageStore.html">imaging/imageStore</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_imageStore.html#.larvitar_store">larvitar_store</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#initLarvitarStore#.initLarvitarStore">initLarvitarStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#addSeriesIds#~addSeriesIds">addSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#addViewport#~addViewport">addViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#deleteViewport#~deleteViewport">deleteViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#disableVuex#~disableVuex">disableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#enableVuex#~enableVuex">enableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#get#~get">get</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#removeSeriesIds#~removeSeriesIds">removeSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageStore.html#set#~set">set</a></li></ul></li><li><a href="module-imaging_imageTools.html">imaging/imageTools</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addContoursTool#~addContoursTool">addContoursTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addDiameterTool#~addDiameterTool">addDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addMaskEditingTool#~addMaskEditingTool">addMaskEditingTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addSeedsTool#~addSeedsTool">addSeedsTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addStackStateToElement#~addStackStateToElement">addStackStateToElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#addToolStateSingleSlice#~addToolStateSingleSlice">addToolStateSingleSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#clearCornerstoneElements#~clearCornerstoneElements">clearCornerstoneElements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#clearMeasurements#~clearMeasurements">clearMeasurements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#clearToolStateByName#~clearToolStateByName">clearToolStateByName</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#getCurrentMaskData#~getCurrentMaskData">getCurrentMaskData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#getToolState#~getToolState">getToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setSegmentationConfig#~setSegmentationConfig">setSegmentationConfig</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#syncToolStack#~syncToolStack">syncToolStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#updateDiameterTool#~updateDiameterTool">updateDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageTools.html#updateStackToolState#~updateStackToolState">updateStackToolState</a></li></ul></li><li><a href="module-imaging_imageUtils.html">imaging/imageUtils</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#formatDate#formatDate">formatDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#formatDateTime#formatDateTime">formatDateTime</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getCmprMetadata#getCmprMetadata">getCmprMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getDICOMTag#getDICOMTag">getDICOMTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getDICOMTagCode#getDICOMTagCode">getDICOMTagCode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getDistanceBetweenSlices#getDistanceBetweenSlices">getDistanceBetweenSlices</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getMaxPixelValue#getMaxPixelValue">getMaxPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getMeanValue#getMeanValue">getMeanValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getMinPixelValue#getMinPixelValue">getMinPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getNormalOrientation#getNormalOrientation">getNormalOrientation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getPixelRepresentation#getPixelRepresentation">getPixelRepresentation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getPixelTypedArray#getPixelTypedArray">getPixelTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedIOP#getReslicedIOP">getReslicedIOP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedIPP#getReslicedIPP">getReslicedIPP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedMetadata#getReslicedMetadata">getReslicedMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedPixeldata#getReslicedPixeldata">getReslicedPixeldata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getReslicedSliceLocation#getReslicedSliceLocation">getReslicedSliceLocation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getSortedStack#getSortedStack">getSortedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getSortedUIDs#getSortedUIDs">getSortedUIDs</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getTagValue#getTagValue">getTagValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getTypedArray#getTypedArray">getTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#getTypedArrayFromDataType#getTypedArrayFromDataType">getTypedArrayFromDataType</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isElement#isElement">isElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isNegativeSign#isNegativeSign">isNegativeSign</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isStringVr#isStringVr">isStringVr</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#isValidDate#isValidDate">isValidDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseAgeTag#parseAgeTag">parseAgeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseDateTag#parseDateTag">parseDateTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseDateTimeTag#parseDateTimeTag">parseDateTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseDICOMFileIDTag#parseDICOMFileIDTag">parseDICOMFileIDTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parsePatientNameTag#parsePatientNameTag">parsePatientNameTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseTag#parseTag">parseTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#parseTimeTag#parseTimeTag">parseTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#permuteSignedArrays#permuteSignedArrays">permuteSignedArrays</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#permuteValues#permuteValues">permuteValues</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#rand#rand">rand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#randomId#randomId">randomId</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#sortStackCallback#sortStackCallback">sortStackCallback</a></li><li data-type='method' style='display: none;'><a href="module-imaging_imageUtils.html#spacingArray#spacingArray">spacingArray</a></li></ul></li><li><a href="module-imaging_strategies_eraseFreehand.html">imaging/strategies/eraseFreehand</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_strategies_eraseFreehand.html#eraseInsideFreehand#.eraseInsideFreehand">eraseInsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_eraseFreehand.html#eraseOutsideFreehand#.eraseOutsideFreehand">eraseOutsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_eraseFreehand.html#eraseFreehand#~eraseFreehand">eraseFreehand</a></li></ul></li><li><a href="module-imaging_strategies_fillFreehand.html">imaging/strategies/fillFreehand</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_strategies_fillFreehand.html#fillInsideFreehand#.fillInsideFreehand">fillInsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_fillFreehand.html#fillOutsideFreehand#.fillOutsideFreehand">fillOutsideFreehand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_strategies_fillFreehand.html#fillFreehand#~fillFreehand">fillFreehand</a></li></ul></li><li><a href="module-imaging_tools_custom_contourTool.html">imaging/tools/custom/contourTool</a></li><li><a href="module-imaging_tools_custom_diameterTool.html">imaging/tools/custom/diameterTool</a></li><li><a href="module-imaging_tools_custom_editMaskTool.html">imaging/tools/custom/editMaskTool</a></li><li><a href="module-imaging_tools_custom_polygonScissorsTool.html">imaging/tools/custom/polygonScissorsTool</a></li><li><a href="module-imaging_tools_custom_thresholdBrushTool.html">imaging/tools/custom/thresholdBrushTool</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_custom_thresholdBrushTool.html#_paint#_paint">_paint</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_custom_thresholdBrushTool.html#getCircleWithThreshold#~getCircleWithThreshold">getCircleWithThreshold</a></li></ul></li><li><a href="module-imaging_tools_default.html">imaging/tools/default</a></li><li><a href="module-imaging_tools_interaction.html">imaging/tools/interaction</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_interaction.html#addMouseKeyHandlers#.addMouseKeyHandlers">addMouseKeyHandlers</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_interaction.html#toggleMouseHandlers#toggleMouseHandlers">toggleMouseHandlers</a></li></ul></li><li><a href="module-imaging_tools_io.html">imaging/tools/io</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_tools_io.html#.exportAnnotations">exportAnnotations</a></li><li data-type='member' style='display: none;'><a href="module-imaging_tools_io.html#.loadAnnotations">loadAnnotations</a></li><li data-type='member' style='display: none;'><a href="module-imaging_tools_io.html#.saveAnnotations">saveAnnotations</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_io.html#generateCSV#.generateCSV">generateCSV</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_io.html#download#~download">download</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_io.html#extractToolInfo#~extractToolInfo">extractToolInfo</a></li></ul></li><li><a href="module-imaging_tools_main.html">imaging/tools/main</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#csToolsUpdateImageIndex#.csToolsUpdateImageIndex">csToolsUpdateImageIndex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#addTool#~addTool">addTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#csToolsCreateStack#~csToolsCreateStack">csToolsCreateStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#initializeCSTools#~initializeCSTools">initializeCSTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolDisabled#~setToolDisabled">setToolDisabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#setToolsStyle#~setToolsStyle">setToolsStyle</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_main.html#tryUpdateImage#~tryUpdateImage">tryUpdateImage</a></li></ul></li><li><a href="module-imaging_tools_polygonSegmentationMixin.html">imaging/tools/polygonSegmentationMixin</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_polygonSegmentationMixin.html#_checkIfDrawing#~_checkIfDrawing">_checkIfDrawing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_polygonSegmentationMixin.html#renderToolData#~renderToolData">renderToolData</a></li></ul></li><li><a href="module-imaging_tools_segmentation.html">imaging/tools/segmentation</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#addSegmentationMask#.addSegmentationMask">addSegmentationMask</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#clearSegmentationState#.clearSegmentationState">clearSegmentationState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#deleteMask#.deleteMask">deleteMask</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#disableBrushTool#.disableBrushTool">disableBrushTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#enableBrushTool#.enableBrushTool">enableBrushTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#forceRender#.forceRender">forceRender</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#getActiveLabelmapBuffer#.getActiveLabelmapBuffer">getActiveLabelmapBuffer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#getLabelColor#.getLabelColor">getLabelColor</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#initSegmentationModule#.initSegmentationModule">initSegmentationModule</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#loadMaskSlice#.loadMaskSlice">loadMaskSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#redoLastStroke#.redoLastStroke">redoLastStroke</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setActiveLabelmap#.setActiveLabelmap">setActiveLabelmap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setActiveLabelOpacity#.setActiveLabelOpacity">setActiveLabelOpacity</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setActiveSegment#.setActiveSegment">setActiveSegment</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setBrushProps#.setBrushProps">setBrushProps</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setInactiveLabelOpacity#.setInactiveLabelOpacity">setInactiveLabelOpacity</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setLabelColor#.setLabelColor">setLabelColor</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#setMaskProps#.setMaskProps">setMaskProps</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#toggleContourMode#.toggleContourMode">toggleContourMode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#toggleVisibility#.toggleVisibility">toggleVisibility</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#undoLastStroke#.undoLastStroke">undoLastStroke</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#generateLUT#~generateLUT">generateLUT</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#generateUniformLUT#~generateUniformLUT">generateUniformLUT</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_segmentation.html#HSVtoRGB#~HSVtoRGB">HSVtoRGB</a></li></ul></li><li><a href="module-imaging_tools_state.html">imaging/tools/state</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools_state.html#restoreToolState#~restoreToolState">restoreToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools_state.html#saveToolState#~saveToolState">saveToolState</a></li></ul></li><li><a href="module-loaders_commonLoader.html">loaders/commonLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getImageFrame#getImageFrame">getImageFrame</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarImageTracker#getLarvitarImageTracker">getLarvitarImageTracker</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarManager#getLarvitarManager">getLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getSeriesDataFromLarvitarManager#getSeriesDataFromLarvitarManager">getSeriesDataFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#populateLarvitarManager#populateLarvitarManager">populateLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#removeSeriesFromLarvitarManager#removeSeriesFromLarvitarManager">removeSeriesFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#resetLarvitarManager#resetLarvitarManager">resetLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#updateLarvitarManager#updateLarvitarManager">updateLarvitarManager</a></li></ul></li><li><a href="module-loaders_dicomLoader.html">loaders/dicomLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#cacheImages#cacheImages">cacheImages</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getDicomImageId#getDicomImageId">getDicomImageId</a></li></ul></li><li><a href="module-loaders_fileLoader.html">loaders/fileLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#getFileImageId#getFileImageId">getFileImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#populateFileManager#populateFileManager">populateFileManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileLoader#resetFileLoader">resetFileLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileManager#resetFileManager">resetFileManager</a></li></ul></li><li><a href="module-loaders_multiframeLoader.html">loaders/multiframeLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#clearMultiFrameCache#clearMultiFrameCache">clearMultiFrameCache</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#getMultiFrameImageId#getMultiFrameImageId">getMultiFrameImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#setPixelDataType#setPixelDataType">setPixelDataType</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#buildMultiFrameImage#~buildMultiFrameImage">buildMultiFrameImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_multiframeLoader.html#loadMultiFrameImage#~loadMultiFrameImage">loadMultiFrameImage</a></li></ul></li><li><a href="module-loaders_nrrdLoader.html">loaders/nrrdLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#buildNrrdImage#buildNrrdImage">buildNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getImageIdFromSlice#getImageIdFromSlice">getImageIdFromSlice</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdImageId#getNrrdImageId">getNrrdImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdSerieDimensions#getNrrdSerieDimensions">getNrrdSerieDimensions</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSliceNumberFromImageId#getSliceNumberFromImageId">getSliceNumberFromImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#loadNrrdImage#loadNrrdImage">loadNrrdImage</a></li></ul></li><li><a href="module-loaders_resliceLoader.html">loaders/resliceLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#loadReslicedImage#loadReslicedImage">loadReslicedImage</a></li></ul></li><li><a href="module-monitors_memory.html">monitors/memory</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemoryAllocation#checkMemoryAllocation">checkMemoryAllocation</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemorySupport#checkMemorySupport">checkMemorySupport</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getAvailableMemory#getAvailableMemory">getAvailableMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getMB#getMB">getMB</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getUsedMemory#getUsedMemory">getUsedMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#setAvailableMemory#setAvailableMemory">setAvailableMemory</a></li></ul></li><li><a href="module-tools_default.html">tools/default</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-tools_default.html#getDefaultToolsByType#~getDefaultToolsByType">getDefaultToolsByType</a></li><li data-type='method' style='display: none;'><a href="module-tools_default.html#setDefaultToolsProps#~setDefaultToolsProps">setDefaultToolsProps</a></li></ul></li></ul><h3>Events</h3><ul><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingDoubleTapClickCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingDoubleTapClickCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseDoubleClickCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseDoubleClickCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseDownCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseDownCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseDragCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseDragCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseMoveCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseMoveCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingMouseUpCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingMouseUpCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingTouchDragCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingTouchDragCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_drawingTouchStartCallback">imaging/tools/custom/contourTool.ContoursTool#_drawingTouchStartCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_editMouseDragCallback">imaging/tools/custom/contourTool.ContoursTool#_editMouseDragCallback</a></li><li><a href="module-imaging_tools_custom_contourTool.ContoursTool.html#event:_editTouchDragCallback">imaging/tools/custom/contourTool.ContoursTool#_editTouchDragCallback</a></li></ul><h3>Mixins</h3><ul><li><a href="Mixins.polygonSegmentationMixin%2520-%2520segmentation%2520operations%2520for%2520polyline.html">Mixins.polygonSegmentationMixin - segmentation operations for polyline</a></li></ul><h3>Global</h3><ul><li><a href="global.html#getSegmentsOnPixelData">getSegmentsOnPixelData</a></li><li><a href="global.html#NRRD_TYPES_TO_TYPEDARRAY">NRRD_TYPES_TO_TYPEDARRAY</a></li><li><a href="global.html">parse</a></li><li><a href="global.html#setLabelmap3DByFirstImageId">setLabelmap3DByFirstImageId</a></li><li><a href="global.html#setLabelmap3DForElement">setLabelmap3DForElement</a></li></ul>
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<h1 class="page-title">imageTools.js</h1>
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<section>
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<article>
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<pre class="prettyprint source linenums"><code>/** @module imaging/imageTools
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* @desc This file provides functionalities for
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* interacting with cornerstone tools
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*/
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// external libraries
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import cornerstone from "cornerstone-core";
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import cornerstoneTools from "cornerstone-tools";
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import { each, extend, filter, remove, cloneDeep } from "lodash";
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// internal libraries
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import { DEFAULT_TOOLS } from "./tools/default";
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// import { SeedsTool } from "./tools/custom/seedTool";
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import { ContoursTool } from "./tools/custom/contourTool";
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import { EditMaskTool } from "./tools/custom/editMaskTool";
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import { DiameterTool } from "./tools/custom/diameterTool";
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import { getImageIdFromSlice } from "./loaders/nrrdLoader";
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import { getSeriesDataFromLarvitarManager } from "./loaders/commonLoader";
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import { parseContours } from "./imageContours";
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import { isElement } from "./imageUtils";
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/*
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* This module provides the following functions to be exported:
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* csToolsCreateStack(element)
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* addDefaultTools(toolToActivate)
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* clearMeasurements()
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* addContoursTool(rawContours, maskName)
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* addMaskEditingTool(seriesId,mask,setConfig,callback, targetViewport)
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* getCurrentMaskData(viewportId)
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* addStackStateToElement(seriesId, element)
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* addSeedsTool(preLoadSeeds, initViewport)
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* addDiameterTool(targetElementId, diameters, seriesId)
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* setToolActive(toolName, options, activeViewport, viewports)
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* setToolDisabled(toolName, options, activeViewport, viewports)
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* setToolEnabled(toolName, options, activeViewport, viewports)
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* setToolPassive(toolName, options, activeViewport, viewports)
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* getToolState(toolName)
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* updateDiameterTool(diameterId, value, seriesId)
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* addToolStateSingleSlice(element, toolType, data, slice, seriesId)
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* clearToolStateByName(toolName, options)
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* clearCornerstoneElements()
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* syncToolStack(srcSliceNumber, toolName, viewport, seriesId)
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* updateStackToolState(element, imageIndex)
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*/
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/**
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* Add all default tools, as listed in tools/default.js
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* @function addDefaultTools
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* @deprecated (OBSOLETE)
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*/
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export const addDefaultTools = function (toolToActivate) {
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// for each default tool
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each(DEFAULT_TOOLS, tool => {
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// check if already added
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if (!isToolMissing(tool.name)) {
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return;
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}
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let configuration = tool.configuration;
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let toolClass = cornerstoneTools[tool.class];
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// check target viewports and call add tool with options
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if (tool.viewports == "all") {
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cornerstoneTools.addTool(toolClass, { configuration });
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} else {
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// call add tool for element for each element
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each(tool.viewports, targetElement => {
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cornerstoneTools.addToolForElement(
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targetElement,
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toolClass,
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configuration
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);
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});
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}
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let elements = cornerstone.getEnabledElements();
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// if sync tool, enable
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if (tool.sync) {
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const synchronizer = new cornerstoneTools.Synchronizer(
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"cornerstoneimagerendered",
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cornerstoneTools[tool.sync]
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);
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elements.forEach(element => {
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synchronizer.add(element.element);
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});
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synchronizer.enabled = true;
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}
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if (tool.defaultActive || tool.name == toolToActivate) {
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setToolActive(tool.name, tool.options);
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}
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});
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// set wheel scroll active
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setToolActive("StackScrollMouseWheel", {
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loop: false, // default false
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allowSkipping: false, // default true
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invert: false
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});
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};
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/**
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* Add Diameter tool
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* @function addDiameterTool
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* @param {String} elementId - The target hmtl element id or its DOM HTMLElement
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* @param {Array} diameters - The array of diameter objects.
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* @param {String} seriesId - The id of the target serie.
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*/
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export const addDiameterTool = function (elementId, diameters, seriesId) {
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if (isToolMissing("Diameter")) {
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let element = isElement(elementId)
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? elementId
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: document.getElementById(elementId);
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cornerstoneTools.addToolForElement(element, DiameterTool, {
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dataArray: diameters,
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seriesId: seriesId
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});
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setToolPassive("Diameter");
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}
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};
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/**
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* Add Contour tool
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* @function addContoursTool
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* @param {Object} rawContours - The contours object (generated from a segmentation mask).
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* @param {String} maskName - The name tag that identify the mask
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*/
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export const addContoursTool = function (rawContours, maskName) {
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var pointBatchSize = 2;
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console.time("...parsing contours");
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var contoursParsedData = parseContours(rawContours, pointBatchSize, maskName);
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console.timeEnd("...parsing contours");
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cornerstoneTools.addTool(ContoursTool, {
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contoursParsedData,
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maskName
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});
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};
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/**
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* Add mask editing tool
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* @function addMaskEditingTool
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* @param {Array} mask - The mask data.
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* @param {Function} callback - The tool initialization callback
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* @param {String} targetViewport - The target hmtl element id.
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*/
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export const addMaskEditingTool = function (mask, callback, targetViewport) {
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let enabledElements = cornerstone.getEnabledElements();
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each(enabledElements, el => {
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if (el.element.id == targetViewport) {
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cornerstoneTools.addToolForElement(el.element, EditMaskTool, {
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mask: mask,
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initCallback: callback,
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configuration: { alwaysEraseOnClick: false }
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});
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cornerstoneTools.setToolEnabledForElement(el.element, "EditMask", {
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mouseButtonMask: 1
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});
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}
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});
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let defaultConfig = {
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radius: 5,
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fillAlpha: 0.5
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};
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setSegmentationConfig(defaultConfig);
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};
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/**
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* Modify configuration for cornerstone tools segmentation module
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* @function setSegmentationConfig
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* @param {Object} config - The custom configuration.
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* @example
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* Example of custom configuration
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* config = {
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renderOutline: true,
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renderFill: true,
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shouldRenderInactiveLabelmaps: true,
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radius: 10,
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minRadius: 1,
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maxRadius: 50,
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segmentsPerLabelmap: 65535,
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fillAlpha: 0.7,
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fillAlphaInactive: 0.1,
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outlineAlpha: 0.7,
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outlineAlphaInactive: 0.35,
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outlineWidth: 3,
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storeHistory: true
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};
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*/
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export const setSegmentationConfig = function (config) {
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let { configuration } = cornerstoneTools.getModule("segmentation");
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extend(configuration, config);
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let enabledElements = cornerstone.getEnabledElements();
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each(enabledElements, el => {
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cornerstone.updateImage(el.element);
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});
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};
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/**
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* Get mask editing tool current data from state
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* @function getCurrentMaskData
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* @param {String} viewportId - The target hmtl element id.
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* @return {Array} labelmap3D - The mask array
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*/
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export const getCurrentMaskData = function (viewportId) {
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const { getters } = cornerstoneTools.getModule("segmentation");
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let enabledElement = cornerstone
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.getEnabledElements()
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.filter(e => e.element.id == viewportId)
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.pop();
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const { labelmap3D } = getters.labelmap2D(enabledElement.element);
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return labelmap3D;
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};
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|
-
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-
/**
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|
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* Add Stack State to a single hmtl element
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* @function addStackStateToElement
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* @param {String} seriesId - The id of the target serie.
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* @param {HTMLElement} element - The target hmtl element.
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*/
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|
-
export const addStackStateToElement = function (seriesId, element) {
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// Define the Stack object
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const stack = getSeriesDataFromLarvitarManager(seriesId)[element.id];
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// Add the stack tool state to the enabled element
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cornerstoneTools.addStackStateManager(element, ["stack"]);
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cornerstoneTools.addToolState(element, "stack", stack);
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};
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|
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/**
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|
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* Add seeds tool
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* @function addSeedsTool
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* @param {Array} preLoadSeeds - The array of seeds to load as initialization.
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* @param {String} initViewport - The hmtl element id to be used for tool initialization.
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|
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*/
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export const addSeedsTool = function (preLoadSeeds, initViewport) {
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if (isToolMissing("Seeds")) {
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let enabledElements = cornerstone.getEnabledElements();
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each(enabledElements, el => {
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let initialize = el.element.id == initViewport;
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cornerstoneTools.addToolForElement(el.element, SeedsTool, {
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preLoadSeeds,
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initialize,
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initViewport
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});
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});
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setToolEnabled("Seeds");
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}
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};
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|
-
|
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310
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/**
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311
|
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* Delete all measurements from tools state, for tools that have the "cleaneable" prop set to true in tools/default.js
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312
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* @function clearMeasurements
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313
|
-
*/
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|
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export const clearMeasurements = function () {
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|
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let enabledElements = cornerstone.getEnabledElements();
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|
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let clenableTools = filter(DEFAULT_TOOLS, "cleanable");
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317
|
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318
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each(enabledElements, el => {
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319
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each(clenableTools, function (tool) {
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cornerstoneTools.clearToolState(el.element, tool.name);
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});
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|
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});
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323
|
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each(enabledElements, el => {
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cornerstone.updateImage(el.element);
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325
|
-
});
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326
|
-
};
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327
|
-
|
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328
|
-
/**
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329
|
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* Set Tool "active" on all elements (ie, rendered and manipulable) & refresh cornerstone elements
|
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330
|
-
* @function setToolActive
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331
|
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* @param {String} toolName - The tool name.
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332
|
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* @param {Object} options - The custom options. @default from tools/default.js
|
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333
|
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* @param {String} activeViewport - The active viewport (if "all", viewports array will be used)
|
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334
|
-
* @param {Array} viewports - The hmtl element id to be used for tool initialization.
|
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335
|
-
*/
|
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336
|
-
export const setToolActive = function (
|
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337
|
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toolName,
|
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338
|
-
options,
|
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339
|
-
activeViewport,
|
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340
|
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viewports
|
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341
|
-
) {
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342
|
-
let defaultOpt = DEFAULT_TOOLS[toolName].options;
|
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343
|
-
extend(defaultOpt, options);
|
|
344
|
-
cornerstoneTools.setToolActive(toolName, defaultOpt);
|
|
345
|
-
if (activeViewport == "all") {
|
|
346
|
-
each(viewports, function (elementId) {
|
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347
|
-
let el = document.getElementById(elementId);
|
|
348
|
-
if (el) {
|
|
349
|
-
cornerstone.updateImage(el);
|
|
350
|
-
}
|
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351
|
-
});
|
|
352
|
-
} else {
|
|
353
|
-
let el = document.getElementById(activeViewport);
|
|
354
|
-
if (el) {
|
|
355
|
-
cornerstone.updateImage(el);
|
|
356
|
-
}
|
|
357
|
-
}
|
|
358
|
-
};
|
|
359
|
-
|
|
360
|
-
/**
|
|
361
|
-
* Set Tool "disabled" on all elements (ie, not rendered) & refresh cornerstone elements
|
|
362
|
-
* @function setToolActive
|
|
363
|
-
* @param {String} toolName - The tool name.
|
|
364
|
-
* @param {String} activeViewport - The active viewport (if "all", viewports array will be used)
|
|
365
|
-
* @param {Array} viewports - The hmtl element id to be used for tool initialization.
|
|
366
|
-
*/
|
|
367
|
-
export const setToolDisabled = function (toolName, activeViewport, viewports) {
|
|
368
|
-
cornerstoneTools.setToolDisabled(toolName);
|
|
369
|
-
if (activeViewport == "all") {
|
|
370
|
-
each(viewports, function (elementId) {
|
|
371
|
-
let el = document.getElementById(elementId);
|
|
372
|
-
if (el) {
|
|
373
|
-
cornerstone.updateImage(el);
|
|
374
|
-
}
|
|
375
|
-
});
|
|
376
|
-
} else {
|
|
377
|
-
let el = document.getElementById(activeViewport);
|
|
378
|
-
if (el) {
|
|
379
|
-
cornerstone.updateImage(el);
|
|
380
|
-
}
|
|
381
|
-
}
|
|
382
|
-
};
|
|
383
|
-
|
|
384
|
-
/**
|
|
385
|
-
* Set Tool "enabled" on all elements (ie, rendered but not manipulable) & refresh cornerstone elements
|
|
386
|
-
* @function setToolEnabled
|
|
387
|
-
* @param {String} toolName - The tool name.
|
|
388
|
-
* @param {String} activeViewport - The active viewport (if "all", viewports array will be used)
|
|
389
|
-
* @param {Array} viewports - The hmtl element id to be used for tool initialization.
|
|
390
|
-
*/
|
|
391
|
-
export const setToolEnabled = function (toolName, activeViewport, viewports) {
|
|
392
|
-
cornerstoneTools.setToolEnabled(toolName);
|
|
393
|
-
if (activeViewport == "all") {
|
|
394
|
-
each(viewports, function (elementId) {
|
|
395
|
-
let el = document.getElementById(elementId);
|
|
396
|
-
if (el) {
|
|
397
|
-
cornerstone.updateImage(el);
|
|
398
|
-
}
|
|
399
|
-
});
|
|
400
|
-
} else {
|
|
401
|
-
let el = document.getElementById(activeViewport);
|
|
402
|
-
if (el) {
|
|
403
|
-
cornerstone.updateImage(el);
|
|
404
|
-
}
|
|
405
|
-
}
|
|
406
|
-
};
|
|
407
|
-
|
|
408
|
-
/**
|
|
409
|
-
* Set Tool "enabled" on all elements (ie, rendered and manipulable passively) & refresh cornerstone elements
|
|
410
|
-
* @function setToolPassive
|
|
411
|
-
* @param {String} toolName - The tool name.
|
|
412
|
-
* @param {String} activeViewport - The active viewport (if "all", viewports array will be used)
|
|
413
|
-
* @param {Array} viewports - The hmtl element id to be used for tool initialization.
|
|
414
|
-
*/
|
|
415
|
-
export const setToolPassive = function (toolName, activeViewport, viewports) {
|
|
416
|
-
cornerstoneTools.setToolPassive(toolName);
|
|
417
|
-
if (activeViewport == "all") {
|
|
418
|
-
each(viewports, function (elementId) {
|
|
419
|
-
let el = document.getElementById(elementId);
|
|
420
|
-
if (el) {
|
|
421
|
-
cornerstone.updateImage(el);
|
|
422
|
-
}
|
|
423
|
-
});
|
|
424
|
-
} else {
|
|
425
|
-
let el = document.getElementById(activeViewport);
|
|
426
|
-
if (el) {
|
|
427
|
-
cornerstone.updateImage(el);
|
|
428
|
-
}
|
|
429
|
-
}
|
|
430
|
-
};
|
|
431
|
-
|
|
432
|
-
/**
|
|
433
|
-
* Get tool data for all enabled elements
|
|
434
|
-
* @function getToolState
|
|
435
|
-
* @param {String} toolName - The tool name.
|
|
436
|
-
* @return {Object} - Tool data grouped by element id
|
|
437
|
-
*/
|
|
438
|
-
export const getToolState = function (toolName) {
|
|
439
|
-
let enabledElements = cornerstone.getEnabledElements();
|
|
440
|
-
let toolData = {};
|
|
441
|
-
each(enabledElements, el => {
|
|
442
|
-
toolData[el.element.id] = cornerstoneTools.getToolState(
|
|
443
|
-
el.element,
|
|
444
|
-
toolName
|
|
445
|
-
);
|
|
446
|
-
});
|
|
447
|
-
return toolData;
|
|
448
|
-
};
|
|
449
|
-
|
|
450
|
-
/**
|
|
451
|
-
* Clear tool data for a subset of seeds
|
|
452
|
-
* @function clearToolStateByName
|
|
453
|
-
* @param {String} toolName - The tool name.
|
|
454
|
-
* @param {Object} options - Props used to select the data to delete (at the moment only {name : "targetName"} is implemented)
|
|
455
|
-
*/
|
|
456
|
-
export const clearToolStateByName = function (toolName, options) {
|
|
457
|
-
let enabledElements = cornerstone.getEnabledElements();
|
|
458
|
-
each(enabledElements, el => {
|
|
459
|
-
const toolStateManager = el.toolStateManager;
|
|
460
|
-
let imageIds = Object.keys(toolStateManager.toolState);
|
|
461
|
-
each(imageIds, imageId => {
|
|
462
|
-
let toolData = toolStateManager.toolState[imageId];
|
|
463
|
-
if (toolData[toolName]) {
|
|
464
|
-
remove(toolData[toolName].data, singleData => {
|
|
465
|
-
return singleData.name == options.name;
|
|
466
|
-
});
|
|
467
|
-
}
|
|
468
|
-
});
|
|
469
|
-
});
|
|
470
|
-
each(enabledElements, el => {
|
|
471
|
-
cornerstone.updateImage(el.element);
|
|
472
|
-
});
|
|
473
|
-
};
|
|
474
|
-
|
|
475
|
-
/**
|
|
476
|
-
* Update diameter tool with new value (removing old one)
|
|
477
|
-
* @function updateDiameterTool
|
|
478
|
-
* @param {String | Number} diameterId - The id that identify the diameter data.
|
|
479
|
-
* @param {Object} value - The object representing the new diameter data.
|
|
480
|
-
* @param {String} seriesId - The target serie id.
|
|
481
|
-
* @param {String} viewportId - The viewport id.
|
|
482
|
-
*/
|
|
483
|
-
export const updateDiameterTool = function (
|
|
484
|
-
diameterId,
|
|
485
|
-
value,
|
|
486
|
-
seriesId,
|
|
487
|
-
viewportId
|
|
488
|
-
) {
|
|
489
|
-
// clear target diameter
|
|
490
|
-
if (!diameterId) {
|
|
491
|
-
console.warn("no diameterId, return");
|
|
492
|
-
return;
|
|
493
|
-
}
|
|
494
|
-
|
|
495
|
-
clearToolStateByName("Diameter", {
|
|
496
|
-
name: diameterId
|
|
497
|
-
});
|
|
498
|
-
// insert new one
|
|
499
|
-
let data = {
|
|
500
|
-
toolType: "Diameter",
|
|
501
|
-
name: diameterId,
|
|
502
|
-
isCreating: true,
|
|
503
|
-
visible: true,
|
|
504
|
-
active: false,
|
|
505
|
-
invalidated: false,
|
|
506
|
-
handles: {
|
|
507
|
-
start: {
|
|
508
|
-
x: value.tool.x1,
|
|
509
|
-
y: value.tool.y1,
|
|
510
|
-
index: 0,
|
|
511
|
-
drawnIndependently: false,
|
|
512
|
-
allowedOutsideImage: false,
|
|
513
|
-
highlight: true,
|
|
514
|
-
active: false
|
|
515
|
-
},
|
|
516
|
-
end: {
|
|
517
|
-
x: value.tool.x2,
|
|
518
|
-
y: value.tool.y2,
|
|
519
|
-
index: 1,
|
|
520
|
-
drawnIndependently: false,
|
|
521
|
-
allowedOutsideImage: false,
|
|
522
|
-
highlight: true,
|
|
523
|
-
active: false
|
|
524
|
-
},
|
|
525
|
-
perpendicularStart: {
|
|
526
|
-
x: value.tool.x3,
|
|
527
|
-
y: value.tool.y3,
|
|
528
|
-
index: 2,
|
|
529
|
-
drawnIndependently: false,
|
|
530
|
-
allowedOutsideImage: false,
|
|
531
|
-
highlight: true,
|
|
532
|
-
active: false,
|
|
533
|
-
locked: false
|
|
534
|
-
},
|
|
535
|
-
perpendicularEnd: {
|
|
536
|
-
x: value.tool.x4,
|
|
537
|
-
y: value.tool.y4,
|
|
538
|
-
index: 3,
|
|
539
|
-
drawnIndependently: false,
|
|
540
|
-
allowedOutsideImage: false,
|
|
541
|
-
highlight: true,
|
|
542
|
-
active: false
|
|
543
|
-
},
|
|
544
|
-
textBox: {
|
|
545
|
-
x: value.tool.value_max,
|
|
546
|
-
y: value.tool.value_min,
|
|
547
|
-
index: null,
|
|
548
|
-
drawnIndependently: true,
|
|
549
|
-
allowedOutsideImage: true,
|
|
550
|
-
highlight: false,
|
|
551
|
-
active: false,
|
|
552
|
-
hasMoved: true,
|
|
553
|
-
movesIndependently: false,
|
|
554
|
-
hasBoundingBox: true,
|
|
555
|
-
boundingBox: {
|
|
556
|
-
width: 59.6484375,
|
|
557
|
-
height: 47,
|
|
558
|
-
left: 165.02487562189057,
|
|
559
|
-
top: 240.53482587064684
|
|
560
|
-
}
|
|
561
|
-
}
|
|
562
|
-
},
|
|
563
|
-
longestDiameter: value.tool.value_max.toString(),
|
|
564
|
-
shortestDiameter: value.tool.value_min.toString()
|
|
565
|
-
};
|
|
566
|
-
|
|
567
|
-
let sliceNumber = value.tool.slice;
|
|
568
|
-
let enabledElement = cornerstone
|
|
569
|
-
.getEnabledElements()
|
|
570
|
-
.filter(el => el.element.id == viewportId)
|
|
571
|
-
.pop();
|
|
572
|
-
|
|
573
|
-
// add to master viewport
|
|
574
|
-
addToolStateSingleSlice(
|
|
575
|
-
enabledElement.element,
|
|
576
|
-
"Diameter",
|
|
577
|
-
data,
|
|
578
|
-
sliceNumber,
|
|
579
|
-
seriesId
|
|
580
|
-
);
|
|
581
|
-
};
|
|
582
|
-
|
|
583
|
-
/**
|
|
584
|
-
* Add tool data for a single target slice
|
|
585
|
-
* @function addToolStateSingleSlice
|
|
586
|
-
* @param {HTMLElement} element - The target hmtl element.
|
|
587
|
-
* @param {String} toolName - The tool name.
|
|
588
|
-
* @param {Object | Array} data - The tool data to add (tool-specific)
|
|
589
|
-
* @param {Number} slice - The target slice to put the data in.
|
|
590
|
-
* @param {String} seriesId - The target serie id.
|
|
591
|
-
*/
|
|
592
|
-
export const addToolStateSingleSlice = function (
|
|
593
|
-
element,
|
|
594
|
-
toolName,
|
|
595
|
-
data,
|
|
596
|
-
slice,
|
|
597
|
-
seriesId
|
|
598
|
-
) {
|
|
599
|
-
const enabledElement = cornerstone.getEnabledElement(element);
|
|
600
|
-
|
|
601
|
-
if (!enabledElement.image) {
|
|
602
|
-
console.warn("no image");
|
|
603
|
-
return;
|
|
604
|
-
}
|
|
605
|
-
|
|
606
|
-
let targetImageId = getImageIdFromSlice(slice, element.id, seriesId);
|
|
607
|
-
|
|
608
|
-
if (enabledElement.toolStateManager === undefined) {
|
|
609
|
-
console.warn("State Manager undefined");
|
|
610
|
-
return;
|
|
611
|
-
}
|
|
612
|
-
let toolState = enabledElement.toolStateManager.toolState;
|
|
613
|
-
|
|
614
|
-
if (toolState.hasOwnProperty(targetImageId) === false) {
|
|
615
|
-
toolState[targetImageId] = {};
|
|
616
|
-
}
|
|
617
|
-
|
|
618
|
-
const imageIdToolState = toolState[targetImageId];
|
|
619
|
-
|
|
620
|
-
// If we don't have tool state for this type of tool, add an empty object
|
|
621
|
-
if (imageIdToolState.hasOwnProperty(toolName) === false) {
|
|
622
|
-
imageIdToolState[toolName] = {
|
|
623
|
-
data: []
|
|
624
|
-
};
|
|
625
|
-
}
|
|
626
|
-
|
|
627
|
-
const toolData = imageIdToolState[toolName];
|
|
628
|
-
|
|
629
|
-
// if an array is provided, override data
|
|
630
|
-
// if (Array.isArray(data)) {
|
|
631
|
-
// toolData.data = data;
|
|
632
|
-
// } else {
|
|
633
|
-
// toolData.data.push(data);
|
|
634
|
-
// }
|
|
635
|
-
|
|
636
|
-
// This implementation works better
|
|
637
|
-
let singledata = typeof data.pop == "function" ? data.pop() : data;
|
|
638
|
-
// remove old data for this id (avoid doubling contours) // TODO generalize
|
|
639
|
-
if (toolName == "ContoursTool") {
|
|
640
|
-
remove(toolData.data, entry => entry && entry.id == singledata.id);
|
|
641
|
-
}
|
|
642
|
-
toolData.data.push(singledata);
|
|
643
|
-
};
|
|
644
|
-
|
|
645
|
-
/**
|
|
646
|
-
* Clear tool state and disable all cornerstone elements
|
|
647
|
-
* @function clearCornerstoneElements
|
|
648
|
-
*/
|
|
649
|
-
export const clearCornerstoneElements = function () {
|
|
650
|
-
var enabledElements = cornerstone.getEnabledElements();
|
|
651
|
-
var inMemElements = cloneDeep(enabledElements); // copy before modifying
|
|
652
|
-
each(inMemElements, el => {
|
|
653
|
-
each(DEFAULT_TOOLS, function (tool) {
|
|
654
|
-
if (tool.cleanable) {
|
|
655
|
-
cornerstoneTools.clearToolState(el.element, tool.name);
|
|
656
|
-
}
|
|
657
|
-
});
|
|
658
|
-
cornerstone.disable(el.element);
|
|
659
|
-
});
|
|
660
|
-
};
|
|
661
|
-
|
|
662
|
-
/**
|
|
663
|
-
* Sync the cornerstone tools stack given a slice as data source
|
|
664
|
-
* @function syncToolStack
|
|
665
|
-
* @param {Number} srcSliceNumber - The slice to be used as data source.
|
|
666
|
-
* @param {String} toolName - The name of the tool to sync.
|
|
667
|
-
* @param {String} viewport - The target viewport id.
|
|
668
|
-
* @param {String} seriesId - The target serie id.
|
|
669
|
-
*/
|
|
670
|
-
export const syncToolStack = function (
|
|
671
|
-
srcSliceNumber,
|
|
672
|
-
toolName,
|
|
673
|
-
viewport,
|
|
674
|
-
seriesId
|
|
675
|
-
) {
|
|
676
|
-
// get the imageIds array
|
|
677
|
-
let seriesData = getSeriesDataFromLarvitarManager(seriesId);
|
|
678
|
-
let imageIds = seriesData[viewport].imageIds;
|
|
679
|
-
|
|
680
|
-
// get the tool state of source imageId
|
|
681
|
-
let element = document.getElementById(viewport);
|
|
682
|
-
let enabledElement = cornerstone.getEnabledElement(element);
|
|
683
|
-
let srcImageId = getImageIdFromSlice(srcSliceNumber, viewport, seriesId);
|
|
684
|
-
let srcImageToolState =
|
|
685
|
-
enabledElement.toolStateManager.toolState[srcImageId][toolName];
|
|
686
|
-
|
|
687
|
-
each(Object.keys(imageIds), sliceNumber => {
|
|
688
|
-
if (sliceNumber == srcSliceNumber) {
|
|
689
|
-
return;
|
|
690
|
-
}
|
|
691
|
-
each(srcImageToolState, data => {
|
|
692
|
-
addToolStateSingleSlice(element, toolName, data, sliceNumber, seriesId);
|
|
693
|
-
});
|
|
694
|
-
});
|
|
695
|
-
};
|
|
696
|
-
|
|
697
|
-
/**
|
|
698
|
-
* Update slice index in cornerstone tools stack state
|
|
699
|
-
* @function updateStackToolState
|
|
700
|
-
* @param {String} elementId - The html div id used for rendering or its DOM HTMLElement
|
|
701
|
-
* @param {Number} imageIndex - The new imageIndex value.
|
|
702
|
-
*/
|
|
703
|
-
export const updateStackToolState = function (elementId, imageIndex) {
|
|
704
|
-
let element = isElement(elementId)
|
|
705
|
-
? elementId
|
|
706
|
-
: document.getElementById(elementId);
|
|
707
|
-
if (!element) {
|
|
708
|
-
console.error("invalid html element: " + elementId);
|
|
709
|
-
return;
|
|
710
|
-
}
|
|
711
|
-
let enabledElement = cornerstone.getEnabledElement(element);
|
|
712
|
-
if (!enabledElement.toolStateManager) {
|
|
713
|
-
return;
|
|
714
|
-
}
|
|
715
|
-
let stackState = enabledElement.toolStateManager.toolState["stack"];
|
|
716
|
-
if (!stackState) {
|
|
717
|
-
return;
|
|
718
|
-
}
|
|
719
|
-
// READY for different segmentations data (data[segmentation_label_id])
|
|
720
|
-
stackState.data[0].currentImageIdIndex = imageIndex;
|
|
721
|
-
};
|
|
722
|
-
|
|
723
|
-
/** @inner Internal module functions */
|
|
724
|
-
|
|
725
|
-
/**
|
|
726
|
-
* Check if a tool has already been added
|
|
727
|
-
* @function isToolMissing
|
|
728
|
-
* @param {String} toolName - The tool name.
|
|
729
|
-
* @param {Array} _viewports - The viewports to check.
|
|
730
|
-
*/
|
|
731
|
-
const isToolMissing = function (toolName, _viewports) {
|
|
732
|
-
let isToolMissing = false;
|
|
733
|
-
|
|
734
|
-
if (_viewports) {
|
|
735
|
-
each(_viewports, function (viewport) {
|
|
736
|
-
let element = cornerstone.getEnabledElement(
|
|
737
|
-
document.getElementById(viewport)
|
|
738
|
-
);
|
|
739
|
-
let added = cornerstoneTools.getToolForElement(element, toolName);
|
|
740
|
-
if (added === undefined) {
|
|
741
|
-
isToolMissing = true;
|
|
742
|
-
}
|
|
743
|
-
});
|
|
744
|
-
} else {
|
|
745
|
-
let elements = cornerstone.getEnabledElements();
|
|
746
|
-
each(elements, function (element) {
|
|
747
|
-
let added = cornerstoneTools.getToolForElement(element, toolName);
|
|
748
|
-
if (added === undefined) {
|
|
749
|
-
isToolMissing = true;
|
|
750
|
-
}
|
|
751
|
-
});
|
|
752
|
-
}
|
|
753
|
-
|
|
754
|
-
return isToolMissing;
|
|
755
|
-
};
|
|
756
|
-
</code></pre>
|
|
757
|
-
</article>
|
|
758
|
-
</section>
|
|
759
|
-
|
|
760
|
-
|
|
761
|
-
|
|
762
|
-
|
|
763
|
-
|
|
764
|
-
|
|
765
|
-
</div>
|
|
766
|
-
|
|
767
|
-
<br class="clear">
|
|
768
|
-
|
|
769
|
-
<footer>
|
|
770
|
-
Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 3.6.7</a> using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
|
|
771
|
-
</footer>
|
|
772
|
-
|
|
773
|
-
<script>prettyPrint();</script>
|
|
774
|
-
<script src="scripts/polyfill.js"></script>
|
|
775
|
-
<script src="scripts/linenumber.js"></script>
|
|
776
|
-
|
|
777
|
-
<script src="scripts/search.js" defer></script>
|
|
778
|
-
|
|
779
|
-
|
|
780
|
-
<script src="scripts/collapse.js" defer></script>
|
|
781
|
-
|
|
782
|
-
|
|
783
|
-
</body>
|
|
784
|
-
</html>
|