larvitar 1.2.0 → 1.2.1

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Files changed (190) hide show
  1. package/.github/workflows/build-docs.yml +1 -1
  2. package/.github/workflows/deploy.yml +4 -4
  3. package/README.md +3 -3
  4. package/modules/vuex/larvitar.js +1 -0
  5. package/package.json +1 -1
  6. package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +0 -171
  7. package/docs/documentation/Tools.Annotation.ContoursTool.html +0 -218
  8. package/docs/documentation/Tools.Annotation.DiameterTool.html +0 -219
  9. package/docs/documentation/Tools.Annotation.SeedsTool.html +0 -214
  10. package/docs/documentation/Tools.Brush.BrushTool.html +0 -218
  11. package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +0 -218
  12. package/docs/documentation/Tools.PolylineScissorsTool.html +0 -218
  13. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
  14. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
  15. package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
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  17. package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
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  21. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
  22. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +0 -978
  23. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
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  25. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
  26. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
  27. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +0 -1049
  28. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
  29. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
  30. package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
  31. package/docs/documentation/global.html +0 -1303
  32. package/docs/documentation/imageAnonymization.js.html +0 -245
  33. package/docs/documentation/imageColormaps.js.html +0 -283
  34. package/docs/documentation/imageContours.js.html +0 -278
  35. package/docs/documentation/imageIo.js.html +0 -291
  36. package/docs/documentation/imageLayers.js.html +0 -188
  37. package/docs/documentation/imageLoading.js.html +0 -297
  38. package/docs/documentation/imageParsing.js.html +0 -385
  39. package/docs/documentation/imagePresets.js.html +0 -207
  40. package/docs/documentation/imageRendering.js.html +0 -849
  41. package/docs/documentation/imageReslice.js.html +0 -162
  42. package/docs/documentation/imageStore.js.html +0 -360
  43. package/docs/documentation/imageTools.js.html +0 -784
  44. package/docs/documentation/imageUtils.js.html +0 -1609
  45. package/docs/documentation/image_colormaps.js.html +0 -283
  46. package/docs/documentation/image_contours.js.html +0 -279
  47. package/docs/documentation/image_io.js.html +0 -288
  48. package/docs/documentation/image_layers.js.html +0 -188
  49. package/docs/documentation/image_loading.js.html +0 -294
  50. package/docs/documentation/image_parsing.js.html +0 -391
  51. package/docs/documentation/image_presets.js.html +0 -207
  52. package/docs/documentation/image_rendering.js.html +0 -845
  53. package/docs/documentation/image_reslice.js.html +0 -164
  54. package/docs/documentation/image_store.js.html +0 -359
  55. package/docs/documentation/image_tools.js.html +0 -792
  56. package/docs/documentation/image_utils.js.html +0 -1609
  57. package/docs/documentation/index.html +0 -175
  58. package/docs/documentation/loaders_commonLoader.js.html +0 -306
  59. package/docs/documentation/loaders_dicomLoader.js.html +0 -130
  60. package/docs/documentation/loaders_fileLoader.js.html +0 -155
  61. package/docs/documentation/loaders_multiframeLoader.js.html +0 -443
  62. package/docs/documentation/loaders_niftiLoader.js.html +0 -150
  63. package/docs/documentation/loaders_nrrdLoader.js.html +0 -545
  64. package/docs/documentation/loaders_resliceLoader.js.html +0 -258
  65. package/docs/documentation/module-imaging_contours.html +0 -954
  66. package/docs/documentation/module-imaging_imageAnonymization.html +0 -544
  67. package/docs/documentation/module-imaging_imageColormaps.html +0 -1012
  68. package/docs/documentation/module-imaging_imageContours.html +0 -954
  69. package/docs/documentation/module-imaging_imageIo.html +0 -1057
  70. package/docs/documentation/module-imaging_imageLayers.html +0 -904
  71. package/docs/documentation/module-imaging_imageLoading.html +0 -1301
  72. package/docs/documentation/module-imaging_imageParsing.html +0 -1356
  73. package/docs/documentation/module-imaging_imagePresets.html +0 -679
  74. package/docs/documentation/module-imaging_imageRendering.html +0 -3223
  75. package/docs/documentation/module-imaging_imageReslice.html +0 -413
  76. package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +0 -284
  77. package/docs/documentation/module-imaging_imageStore.html +0 -1560
  78. package/docs/documentation/module-imaging_imageTools.html +0 -3617
  79. package/docs/documentation/module-imaging_imageUtils.html +0 -7253
  80. package/docs/documentation/module-imaging_io.html +0 -1057
  81. package/docs/documentation/module-imaging_layers.html +0 -904
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  85. package/docs/documentation/module-imaging_rendering.html +0 -8094
  86. package/docs/documentation/module-imaging_reslice.html +0 -411
  87. package/docs/documentation/module-imaging_store-Larvitar_Store.html +0 -284
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  89. package/docs/documentation/module-imaging_strategies_eraseFreehand.html +0 -708
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  91. package/docs/documentation/module-imaging_tools.html +0 -3617
  92. package/docs/documentation/module-imaging_tools_custom_contourTool.html +0 -207
  93. package/docs/documentation/module-imaging_tools_custom_diameterTool.html +0 -205
  94. package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +0 -205
  95. package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +0 -203
  96. package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +0 -684
  97. package/docs/documentation/module-imaging_tools_default.html +0 -205
  98. package/docs/documentation/module-imaging_tools_interaction.html +0 -530
  99. package/docs/documentation/module-imaging_tools_io.html +0 -832
  100. package/docs/documentation/module-imaging_tools_main.html +0 -2028
  101. package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +0 -567
  102. package/docs/documentation/module-imaging_tools_segmentation.html +0 -3586
  103. package/docs/documentation/module-imaging_tools_state.html +0 -494
  104. package/docs/documentation/module-imaging_utils.html +0 -7253
  105. package/docs/documentation/module-loaders_commonLoader.html +0 -1313
  106. package/docs/documentation/module-loaders_dicomLoader.html +0 -522
  107. package/docs/documentation/module-loaders_fileLoader.html +0 -593
  108. package/docs/documentation/module-loaders_multiframeLoader.html +0 -1169
  109. package/docs/documentation/module-loaders_niftiLoader.html +0 -565
  110. package/docs/documentation/module-loaders_nrrdLoader.html +0 -1459
  111. package/docs/documentation/module-loaders_resliceLoader.html +0 -590
  112. package/docs/documentation/module-monitors_memory.html +0 -980
  113. package/docs/documentation/module-tools_default.html +0 -740
  114. package/docs/documentation/module.exports_module.exports.html +0 -203
  115. package/docs/documentation/monitors_memory.js.html +0 -189
  116. package/docs/documentation/parsers_nrrd.js.html +0 -569
  117. package/docs/documentation/scripts/collapse.js +0 -20
  118. package/docs/documentation/scripts/linenumber.js +0 -25
  119. package/docs/documentation/scripts/nav.js +0 -12
  120. package/docs/documentation/scripts/polyfill.js +0 -4
  121. package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +0 -202
  122. package/docs/documentation/scripts/prettify/lang-css.js +0 -2
  123. package/docs/documentation/scripts/prettify/prettify.js +0 -28
  124. package/docs/documentation/scripts/search.js +0 -83
  125. package/docs/documentation/styles/jsdoc.css +0 -765
  126. package/docs/documentation/styles/prettify.css +0 -80
  127. package/docs/documentation/tools_contourTool.js.html +0 -1963
  128. package/docs/documentation/tools_custom_contourTool.js.html +0 -1968
  129. package/docs/documentation/tools_custom_diameterTool.js.html +0 -225
  130. package/docs/documentation/tools_custom_editMaskTool.js.html +0 -225
  131. package/docs/documentation/tools_custom_polylineScissorsTool.js.html +0 -143
  132. package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +0 -245
  133. package/docs/documentation/tools_default.js.html +0 -576
  134. package/docs/documentation/tools_diameterTool.js.html +0 -219
  135. package/docs/documentation/tools_editMaskTool.js.html +0 -219
  136. package/docs/documentation/tools_interaction.js.html +0 -258
  137. package/docs/documentation/tools_io.js.html +0 -297
  138. package/docs/documentation/tools_main.js.html +0 -443
  139. package/docs/documentation/tools_polygonSegmentationMixin.js.html +0 -329
  140. package/docs/documentation/tools_polylineScissorsTool.js.html +0 -136
  141. package/docs/documentation/tools_seedTool.js.html +0 -423
  142. package/docs/documentation/tools_segmentation.js.html +0 -558
  143. package/docs/documentation/tools_state.js.html +0 -163
  144. package/docs/documentation/tools_strategies_eraseFreehand.js.html +0 -160
  145. package/docs/documentation/tools_strategies_fillFreehand.js.html +0 -163
  146. package/docs/documentation/tools_thresholdsBrushTool.js.html +0 -239
  147. package/docs/documentation/tools_tools.default.js.html +0 -569
  148. package/docs/documentation/tools_tools.interaction.js.html +0 -251
  149. package/docs/documentation/tools_tools.io.js.html +0 -288
  150. package/docs/documentation/tools_tools.main.js.html +0 -442
  151. package/docs/documentation/tools_tools.segmentation.js.html +0 -445
  152. package/docs/documentation/tools_tools.state.js.html +0 -157
  153. package/docs/examples/base.html +0 -170
  154. package/docs/examples/colorMaps.html +0 -181
  155. package/docs/examples/defaultTools.html +0 -246
  156. package/docs/examples/demo/anon1 +0 -0
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  180. package/docs/examples/demo/example.nrrd +0 -0
  181. package/docs/examples/demo/segmentation.nrrd +0 -0
  182. package/docs/examples/demo/xa_integris.dcm +0 -0
  183. package/docs/examples/index.html +0 -129
  184. package/docs/examples/larvitar.js +0 -108623
  185. package/docs/examples/layers.html +0 -250
  186. package/docs/examples/masks.html +0 -273
  187. package/docs/examples/multiframe.html +0 -200
  188. package/docs/examples/nrrd.html +0 -96
  189. package/docs/examples/reslice.html +0 -174
  190. package/docs/index.html +0 -92
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- <h2><a href="index.html">Home</a></h2><h2><a href="https://github.com/dvisionlab/Larvitar" target="_blank" class="menu-item" id="repository" >Github repo</a></h2><h3>Classes</h3><ul><li><a href="module.exports_module.exports.html">module.exports#module.exports</a></li><li><a href="module-imaging_store-Larvitar_Store.html">imaging/store~Larvitar_Store</a></li><li><a href="Tools.Annotation.ContoursTool.html">Tools.Annotation.ContoursTool</a></li><li><a href="Tools.Annotation.DiameterTool.html">Tools.Annotation.DiameterTool</a></li><li><a href="Tools.Brush.BrushTool.html">Tools.Brush.BrushTool</a></li><li><a href="Tools.Brush.ThresholdsBrushTool.html">Tools.Brush.ThresholdsBrushTool</a></li><li><a href="Tools.PolylineScissorsTool.html">Tools.PolylineScissorsTool</a></li></ul><h3>Modules</h3><ul><li><a href="module-imaging_anonymization.html">imaging/anonymization</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_anonymization.html#anonymize#~anonymize">anonymize</a></li><li data-type='method' style='display: none;'><a href="module-imaging_anonymization.html#encrypt#~encrypt">encrypt</a></li></ul></li><li><a href="module-imaging_contours.html">imaging/contours</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#extractSlicePoints#extractSlicePoints">extractSlicePoints</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#populateContoursObject#populateContoursObject">populateContoursObject</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#parseContours#~parseContours">parseContours</a></li></ul></li><li><a href="module-imaging_io.html">imaging/io</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildData#~buildData">buildData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildDataAsync#~buildDataAsync">buildDataAsync</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildHeader#~buildHeader">buildHeader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#getCachedPixelData#~getCachedPixelData">getCachedPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#importNRRDImage#~importNRRDImage">importNRRDImage</a></li></ul></li><li><a href="module-imaging_layers.html">imaging/layers</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#getActiveLayer#getActiveLayer">getActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#setActiveLayer#setActiveLayer">setActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#updateLayer#updateLayer">updateLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#buildLayers#~buildLayers">buildLayers</a></li></ul></li><li><a href="module-imaging_loading.html">imaging/loading</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeFileImageLoader#initializeFileImageLoader">initializeFileImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeImageLoader#initializeImageLoader">initializeImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeWebImageLoader#initializeWebImageLoader">initializeWebImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerMultiFrameImageLoader#registerMultiFrameImageLoader">registerMultiFrameImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerNRRDImageLoader#registerNRRDImageLoader">registerNRRDImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerResliceLoader#registerResliceLoader">registerResliceLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#updateLoadedStack#updateLoadedStack">updateLoadedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#isNewInstance#~isNewInstance">isNewInstance</a></li></ul></li><li><a href="module-imaging_parsing.html">imaging/parsing</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#clearImageParsing#clearImageParsing">clearImageParsing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpDataSet#dumpDataSet">dumpDataSet</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFile#readFile">readFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFiles#readFiles">readFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpFile#~dumpFile">dumpFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpFiles#~dumpFiles">dumpFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#parseNextFile#~parseNextFile">parseNextFile</a></li></ul></li><li><a href="module-imaging_presets.html">imaging/presets</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#getImagePresets#getImagePresets">getImagePresets</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImageCustomPreset#setImageCustomPreset">setImageCustomPreset</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImagePreset#setImagePreset">setImagePreset</a></li></ul></li><li><a href="module-imaging_rendering.html">imaging/rendering</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#HSVToRGB#.HSVToRGB">HSVToRGB</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#addColorMap#addColorMap">addColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#applyColorMap#applyColorMap">applyColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#clearImageCache#clearImageCache">clearImageCache</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#disableViewport#disableViewport">disableViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#fillPixelData#fillPixelData">fillPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#flipImageHorizontal#flipImageHorizontal">flipImageHorizontal</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#flipImageVertical#flipImageVertical">flipImageVertical</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getColormapsList#getColormapsList">getColormapsList</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getSeriesData#getSeriesData">getSeriesData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#invertImage#invertImage">invertImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#loadAndCacheImages#loadAndCacheImages">loadAndCacheImages</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderImage#renderImage">renderImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resetViewports#resetViewports">resetViewports</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resizeViewport#resizeViewport">resizeViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#rotateImageLeft#rotateImageLeft">rotateImageLeft</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#rotateImageRight#rotateImageRight">rotateImageRight</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#storeViewportData#storeViewportData">storeViewportData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#unloadViewport#unloadViewport">unloadViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateImage#updateImage">updateImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateViewportData#updateViewportData">updateViewportData</a></li></ul></li><li></li><li><a href="module-imaging_reslice.html">imaging/reslice</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_reslice.html#resliceSeries#resliceSeries">resliceSeries</a></li></ul></li><li><a href="module-imaging_store.html">imaging/store</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_store.html#.larvitar_store">larvitar_store</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_store.html#initLarvitarStore#.initLarvitarStore">initLarvitarStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#addSeriesIds#~addSeriesIds">addSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#addViewport#~addViewport">addViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#deleteViewport#~deleteViewport">deleteViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#disableVuex#~disableVuex">disableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#enableVuex#~enableVuex">enableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#get#~get">get</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#removeSeriesIds#~removeSeriesIds">removeSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#set#~set">set</a></li></ul></li><li><a href="module-imaging_tools.html">imaging/tools</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addContoursTool#~addContoursTool">addContoursTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addDiameterTool#~addDiameterTool">addDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addMaskEditingTool#~addMaskEditingTool">addMaskEditingTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addSeedsTool#~addSeedsTool">addSeedsTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addStackStateToElement#~addStackStateToElement">addStackStateToElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addToolStateSingleSlice#~addToolStateSingleSlice">addToolStateSingleSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearCornerstoneElements#~clearCornerstoneElements">clearCornerstoneElements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearMeasurements#~clearMeasurements">clearMeasurements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearToolStateByName#~clearToolStateByName">clearToolStateByName</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#getCurrentMaskData#~getCurrentMaskData">getCurrentMaskData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#getToolState#~getToolState">getToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setSegmentationConfig#~setSegmentationConfig">setSegmentationConfig</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#syncToolStack#~syncToolStack">syncToolStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#updateDiameterTool#~updateDiameterTool">updateDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#updateStackToolState#~updateStackToolState">updateStackToolState</a></li></ul></li><li><a href="module-imaging_utils.html">imaging/utils</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDate#formatDate">formatDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDateTime#formatDateTime">formatDateTime</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getCmprMetadata#getCmprMetadata">getCmprMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTag#getDICOMTag">getDICOMTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTagCode#getDICOMTagCode">getDICOMTagCode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDistanceBetweenSlices#getDistanceBetweenSlices">getDistanceBetweenSlices</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMaxPixelValue#getMaxPixelValue">getMaxPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMeanValue#getMeanValue">getMeanValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMinPixelValue#getMinPixelValue">getMinPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getNormalOrientation#getNormalOrientation">getNormalOrientation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelRepresentation#getPixelRepresentation">getPixelRepresentation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelTypedArray#getPixelTypedArray">getPixelTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIOP#getReslicedIOP">getReslicedIOP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIPP#getReslicedIPP">getReslicedIPP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedMetadata#getReslicedMetadata">getReslicedMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedPixeldata#getReslicedPixeldata">getReslicedPixeldata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedSliceLocation#getReslicedSliceLocation">getReslicedSliceLocation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedStack#getSortedStack">getSortedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedUIDs#getSortedUIDs">getSortedUIDs</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTagValue#getTagValue">getTagValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArray#getTypedArray">getTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArrayFromDataType#getTypedArrayFromDataType">getTypedArrayFromDataType</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isElement#isElement">isElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isNegativeSign#isNegativeSign">isNegativeSign</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isStringVr#isStringVr">isStringVr</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isValidDate#isValidDate">isValidDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseAgeTag#parseAgeTag">parseAgeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTag#parseDateTag">parseDateTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTimeTag#parseDateTimeTag">parseDateTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDICOMFileIDTag#parseDICOMFileIDTag">parseDICOMFileIDTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parsePatientNameTag#parsePatientNameTag">parsePatientNameTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTag#parseTag">parseTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTimeTag#parseTimeTag">parseTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteSignedArrays#permuteSignedArrays">permuteSignedArrays</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteValues#permuteValues">permuteValues</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#rand#rand">rand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#randomId#randomId">randomId</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#sortStackCallback#sortStackCallback">sortStackCallback</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#spacingArray#spacingArray">spacingArray</a></li></ul></li><li><a href="module-loaders_commonLoader.html">loaders/commonLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getImageFrame#getImageFrame">getImageFrame</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarImageTracker#getLarvitarImageTracker">getLarvitarImageTracker</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarManager#getLarvitarManager">getLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getSeriesDataFromLarvitarManager#getSeriesDataFromLarvitarManager">getSeriesDataFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#populateLarvitarManager#populateLarvitarManager">populateLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#removeSeriesFromLarvitarManager#removeSeriesFromLarvitarManager">removeSeriesFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#resetLarvitarManager#resetLarvitarManager">resetLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#updateLarvitarManager#updateLarvitarManager">updateLarvitarManager</a></li></ul></li><li><a href="module-loaders_dicomLoader.html">loaders/dicomLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#cacheImages#cacheImages">cacheImages</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getDicomImageId#getDicomImageId">getDicomImageId</a></li></ul></li><li><a href="module-loaders_fileLoader.html">loaders/fileLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#getFileImageId#getFileImageId">getFileImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#populateFileManager#populateFileManager">populateFileManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileLoader#resetFileLoader">resetFileLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileManager#resetFileManager">resetFileManager</a></li></ul></li><li><a href="module-loaders_nrrdLoader.html">loaders/nrrdLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#buildNrrdImage#buildNrrdImage">buildNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getImageIdFromSlice#getImageIdFromSlice">getImageIdFromSlice</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdImageId#getNrrdImageId">getNrrdImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdSerieDimensions#getNrrdSerieDimensions">getNrrdSerieDimensions</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSliceNumberFromImageId#getSliceNumberFromImageId">getSliceNumberFromImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#loadNrrdImage#loadNrrdImage">loadNrrdImage</a></li></ul></li><li><a href="module-loaders_resliceLoader.html">loaders/resliceLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#loadReslicedImage#loadReslicedImage">loadReslicedImage</a></li></ul></li><li><a href="module-monitors_memory.html">monitors/memory</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemoryAllocation#checkMemoryAllocation">checkMemoryAllocation</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemorySupport#checkMemorySupport">checkMemorySupport</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getAvailableMemory#getAvailableMemory">getAvailableMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getMB#getMB">getMB</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getUsedMemory#getUsedMemory">getUsedMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#setAvailableMemory#setAvailableMemory">setAvailableMemory</a></li></ul></li><li><a href="module-tools_default.html">tools/default</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-tools_default.html#getDefaultToolsByType#~getDefaultToolsByType">getDefaultToolsByType</a></li><li data-type='method' style='display: none;'><a href="module-tools_default.html#setDefaultToolsProps#~setDefaultToolsProps">setDefaultToolsProps</a></li></ul></li></ul><h3>Events</h3><ul><li><a href="ContoursTool.html#event:_drawingDoubleTapClickCallback">ContoursTool#_drawingDoubleTapClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDoubleClickCallback">ContoursTool#_drawingMouseDoubleClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDownCallback">ContoursTool#_drawingMouseDownCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDragCallback">ContoursTool#_drawingMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseMoveCallback">ContoursTool#_drawingMouseMoveCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseUpCallback">ContoursTool#_drawingMouseUpCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchDragCallback">ContoursTool#_drawingTouchDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchStartCallback">ContoursTool#_drawingTouchStartCallback</a></li><li><a href="ContoursTool.html#event:_editMouseDragCallback">ContoursTool#_editMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_editTouchDragCallback">ContoursTool#_editTouchDragCallback</a></li></ul><h3>Mixins</h3><ul><li><a href="Mixins.polygonSegmentationMixin%2520-%2520segmentation%2520operations%2520for%2520polyline.html">Mixins.polygonSegmentationMixin - segmentation operations for polyline</a></li></ul><h3>Global</h3><ul><li><a href="global.html#_checkIfDrawing">_checkIfDrawing</a></li><li><a href="global.html#_paint">_paint</a></li><li><a href="global.html#addDefaultTools">addDefaultTools</a></li><li><a href="global.html#addMouseKeyHandlers">addMouseKeyHandlers</a></li><li><a href="global.html#addSegmentationMask">addSegmentationMask</a></li><li><a href="global.html#addTool">addTool</a></li><li><a href="global.html#buildMultiFrameImage">buildMultiFrameImage</a></li><li><a href="global.html">clearMultiFrameCache</a></li><li><a href="global.html#clearSegmentationState">clearSegmentationState</a></li><li><a href="global.html#config">config</a></li><li><a href="global.html">createCustomImage</a></li><li><a href="global.html#csToolsCreateStack">csToolsCreateStack</a></li><li><a href="global.html#csToolsUpdateImageIndex">csToolsUpdateImageIndex</a></li><li><a href="global.html#deleteMask">deleteMask</a></li><li><a href="global.html#disableBrushTool">disableBrushTool</a></li><li><a href="global.html#download">download</a></li><li><a href="global.html#enableBrushTool">enableBrushTool</a></li><li><a href="global.html#eraseFreehand">eraseFreehand</a></li><li><a href="global.html#eraseInsideFreehand">eraseInsideFreehand</a></li><li><a href="global.html#eraseOutsideFreehand">eraseOutsideFreehand</a></li><li><a href="global.html#exportAnnotations">exportAnnotations</a></li><li><a href="global.html#extractToolInfo">extractToolInfo</a></li><li><a href="global.html#fillFreehand">fillFreehand</a></li><li><a href="global.html#fillInsideFreehand">fillInsideFreehand</a></li><li><a href="global.html#fillOutsideFreehand">fillOutsideFreehand</a></li><li><a href="global.html#forceRender">forceRender</a></li><li><a href="global.html#generateCSV">generateCSV</a></li><li><a href="global.html#generateLUT">generateLUT</a></li><li><a href="global.html#generateUniformLUT">generateUniformLUT</a></li><li><a href="global.html#getActiveLabelmapBuffer">getActiveLabelmapBuffer</a></li><li><a href="global.html#getCircleWithThreshold">getCircleWithThreshold</a></li><li><a href="global.html">getMultiFrameImageId</a></li><li><a href="global.html#HSVtoRGB">HSVtoRGB</a></li><li><a href="global.html#initializeCSTools">initializeCSTools</a></li><li><a href="global.html#initSegmentationModule">initSegmentationModule</a></li><li><a href="global.html#isDrawing">isDrawing</a></li><li><a href="global.html#isToolMissing">isToolMissing</a></li><li><a href="global.html#loadAnnotations">loadAnnotations</a></li><li><a href="global.html#loadMultiFrameImage">loadMultiFrameImage</a></li><li><a href="global.html#NRRD_TYPES_TO_TYPEDARRAY">NRRD_TYPES_TO_TYPEDARRAY</a></li><li><a href="global.html">parse</a></li><li><a href="global.html#redoLastStroke">redoLastStroke</a></li><li><a href="global.html#renderToolData">renderToolData</a></li><li><a href="global.html#restoreToolState">restoreToolState</a></li><li><a href="global.html#saveAnnotations">saveAnnotations</a></li><li><a href="global.html#saveToolState">saveToolState</a></li><li><a href="global.html#setActiveLabelmap">setActiveLabelmap</a></li><li><a href="global.html#setActiveLabelOpacity">setActiveLabelOpacity</a></li><li><a href="global.html#setActiveSegment">setActiveSegment</a></li><li><a href="global.html#setBrushProps">setBrushProps</a></li><li><a href="global.html#setInactiveLabelOpacity">setInactiveLabelOpacity</a></li><li><a href="global.html#setMaskProps">setMaskProps</a></li><li><a href="global.html">setPixelDataType</a></li><li><a href="global.html#setToolActive">setToolActive</a></li><li><a href="global.html#setToolDisabled">setToolDisabled</a></li><li><a href="global.html#setToolEnabled">setToolEnabled</a></li><li><a href="global.html#setToolPassive">setToolPassive</a></li><li><a href="global.html#setToolsStyle">setToolsStyle</a></li><li><a href="global.html#toggleContourMode">toggleContourMode</a></li><li><a href="global.html">toggleMouseHandlers</a></li><li><a href="global.html#tryUpdateImage">tryUpdateImage</a></li><li><a href="global.html#undoLastStroke">undoLastStroke</a></li></ul>
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- </nav>
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-
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- <div id="main">
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-
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- <h1 class="page-title">image_rendering.js</h1>
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- <section>
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- <article>
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- <pre class="prettyprint source linenums"><code>/** @module imaging/rendering
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- * @desc This file provides functionalities for
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- * rendering images in html canvas using cornerstone
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- */
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-
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- // external libraries
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- import cornerstone from "cornerstone-core";
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- import cornerstoneWADOImageLoader from "cornerstone-wado-image-loader";
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- import { each, has } from "lodash";
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-
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- // internal libraries
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- import { getFileImageId } from "./loaders/fileLoader";
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- import { csToolsCreateStack } from "./tools/tools.main";
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- import { toggleMouseToolsListeners } from "./tools/tools.interaction";
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- import { larvitar_store } from "./image_store";
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- import { applyColorMap } from "./image_colormaps";
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- import { isElement } from "./image_utils";
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-
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- /*
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- * This module provides the following functions to be exported:
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- * clearImageCache(seriesId)
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- * loadAndCacheImages(seriesData, callback)
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- * renderFileImage(file, elementId)
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- * renderWebImage(url, elementId)
80
- * disableViewport(elementId)
81
- * unloadViewport(elementId, seriesId)
82
- * resizeViewport(elementId)
83
- * renderImage(series, elementId, defaultProps)
84
- * updateImage(series, elementId, imageIndex)
85
- * resetViewports([elementIds])
86
- * updateViewportData(elementId)
87
- * toggleMouseHandlers(elementId, disableFlag)
88
- * storeViewportData(params...)
89
- * invertImage(elementId)
90
- * flipImageHorizontal(elementId)
91
- * flipImageVertical(elementId)
92
- * rotateImageLeft(elementId)
93
- * rotateImageRight(elementId)
94
- */
95
-
96
- /**
97
- * Purge the cornestone internal cache
98
- * If seriesId is passed as argument only imageIds of the series are purged from internal cache
99
- * @instance
100
- * @function clearImageCache
101
- * @param {String} seriesId - The id of the serie
102
- */
103
- export const clearImageCache = function (seriesId) {
104
- if (seriesId) {
105
- let series = larvitar_store.get("series");
106
- if (has(series, seriesId)) {
107
- each(series[seriesId].imageIds, function (imageId) {
108
- if (cornerstone.imageCache.cachedImages.length > 0) {
109
- try {
110
- cornerstone.imageCache.removeImageLoadObject(imageId);
111
- } catch (e) {
112
- console.warn("no cached image");
113
- }
114
- } else {
115
- let uri =
116
- cornerstoneWADOImageLoader.wadouri.parseImageId(imageId).url;
117
- cornerstoneWADOImageLoader.wadouri.dataSetCacheManager.unload(uri);
118
- }
119
- });
120
-
121
- larvitar_store.removeSeriesIds(seriesId);
122
- console.log("Uncached images for ", seriesId);
123
- }
124
- } else {
125
- cornerstone.imageCache.purgeCache();
126
- }
127
- };
128
-
129
- /**
130
- * Load and cache all serie's images
131
- * Add series's imageIds into store
132
- * @instance
133
- * @function loadAndCacheImages
134
- * @param {Object} series the parsed series data
135
- * @param {Function} callback a callback function
136
- */
137
- export function loadAndCacheImages(series, callback) {
138
- let t0 = performance.now();
139
- let cachingCounter = 0;
140
- if (series.isMultiframe) {
141
- // console.warn("Do not cache multiframe images for performance issues");
142
- return;
143
- }
144
- let response = {
145
- seriesId: series.seriesUID,
146
- loading: 0,
147
- series: {}
148
- };
149
- callback(response);
150
- // add serie's imageIds into store
151
- larvitar_store.addSeriesIds(series.seriesUID, series.imageIds);
152
- // add serie's caching progress into store
153
- larvitar_store.set("progress", [series.seriesUID, 0]);
154
- each(series.imageIds, function (imageId) {
155
- cornerstone.loadAndCacheImage(imageId).then(function () {
156
- cachingCounter += 1;
157
- let cachingPercentage = Math.floor(
158
- (cachingCounter / series.imageIds.length) * 100
159
- );
160
- response.loading = cachingPercentage;
161
- larvitar_store.set("progress", [series.seriesUID, cachingPercentage]);
162
- if (cachingCounter == series.imageIds.length) {
163
- let t1 = performance.now();
164
- console.log(`Call to cacheImages took ${t1 - t0} milliseconds.`);
165
- console.log("Cached images for ", series.seriesUID);
166
- response.series = series;
167
- }
168
- callback(response);
169
- });
170
- });
171
- }
172
-
173
- /**
174
- * Render an image (png or jpg) from File on a html div using cornerstone
175
- * @instance
176
- * @function renderWebImage
177
- * @param {Object} file - The image File object
178
- * @param {String} elementId - The html div id used for rendering or its DOM HTMLElement
179
- * @param {Function} callback - Optional callback function with image object
180
- */
181
- export const renderFileImage = function (file, elementId, callback) {
182
- let element = isElement(elementId)
183
- ? elementId
184
- : document.getElementById(elementId);
185
- if (!element) {
186
- console.error("invalid html element: " + elementId);
187
- return;
188
- }
189
-
190
- if (cornerstone.getEnabledElements().length == 0) {
191
- cornerstone.enable(element);
192
- }
193
-
194
- // check if imageId is already stored in fileManager
195
- const imageId = getFileImageId(file);
196
- if (imageId) {
197
- cornerstone.loadImage(imageId).then(function (image) {
198
- cornerstone.displayImage(element, image);
199
- let viewport = cornerstone.getViewport(element);
200
- viewport.displayedArea.brhc.x = image.width;
201
- viewport.displayedArea.brhc.y = image.height;
202
- cornerstone.setViewport(element, viewport);
203
- cornerstone.fitToWindow(element);
204
-
205
- csToolsCreateStack(element);
206
- if (callback) {
207
- callback(image);
208
- }
209
- });
210
- }
211
- };
212
-
213
- /**
214
- * Render an image (png or jpg) from web url on a html div using cornerstone
215
- * @instance
216
- * @function renderWebImage
217
- * @param {String} url - The image data url
218
- * @param {String} elementId - The html div id used for rendering or its DOM HTMLElement
219
- */
220
- export const renderWebImage = function (url, elementId) {
221
- let element = isElement(elementId)
222
- ? elementId
223
- : document.getElementById(elementId);
224
- if (!element) {
225
- console.error("invalid html element: " + elementId);
226
- return;
227
- }
228
-
229
- cornerstone.enable(element);
230
- cornerstone.loadImage(url).then(function (image) {
231
- cornerstone.displayImage(element, image);
232
- csToolsCreateStack(element);
233
- });
234
- };
235
-
236
- /**
237
- * Unrender an image on a html div using cornerstone
238
- * @instance
239
- * @function disableViewport
240
- * @param {String} elementId - The html div id used for rendering or its DOM HTMLElement
241
- */
242
- export const disableViewport = function (elementId) {
243
- let element = isElement(elementId)
244
- ? elementId
245
- : document.getElementById(elementId);
246
- if (!element) {
247
- console.error("invalid html element: " + elementId);
248
- return;
249
- }
250
- // toggleMouseHandlers(elementId, true); // flagged true to disable handlers
251
- toggleMouseToolsListeners(elementId, true);
252
- cornerstone.disable(element);
253
- };
254
-
255
- /**
256
- * Unrender an image on a html div using cornerstone
257
- * Remove image from cornerstone cache and remove from store
258
- * @instance
259
- * @function unloadViewport
260
- * @param {String} elementId - The html div id used for rendering or its DOM HTMLElement
261
- * @param {String} seriesId - The id of the serie
262
- */
263
- export const unloadViewport = function (elementId, seriesId) {
264
- disableViewport(elementId);
265
-
266
- if (!seriesId) {
267
- console.warn(
268
- "seriesId not provided, use disableViewport if you do not want to uncache images"
269
- );
270
- }
271
- // remove images from cornerstone cache
272
- if (seriesId &amp;&amp; has(larvitar_store.get("series"), seriesId)) {
273
- clearImageCache(seriesId);
274
- }
275
- larvitar_store.deleteViewport(elementId);
276
- };
277
-
278
- /**
279
- * Resize a viewport using cornerstone resize
280
- * And forcing fit to window
281
- * @instance
282
- * @function resizeViewport
283
- * @param {String} elementId - The html div id used for rendering or its DOM HTMLElement
284
- */
285
- export const resizeViewport = function (elementId) {
286
- let element = isElement(elementId)
287
- ? elementId
288
- : document.getElementById(elementId);
289
- if (!element) {
290
- console.error("invalid html element: " + elementId);
291
- return;
292
- }
293
- cornerstone.resize(element, true); // true flag forces fitToWindow
294
- };
295
-
296
- /**
297
- * Cache image and render it in a html div using cornerstone
298
- * @instance
299
- * @function renderImage
300
- * @param {Object} seriesStack - The original series data object
301
- * @param {String} elementId - The html div id used for rendering or its DOM HTMLElement
302
- * @param {Object} defaultProps - Optional default props
303
- * @return {Promise} Return a promise when the image has been rendered succesfully
304
- */
305
- export const renderImage = function (seriesStack, elementId, defaultProps) {
306
- let t0 = performance.now();
307
-
308
- // get element and enable it
309
- let element = isElement(elementId)
310
- ? elementId
311
- : document.getElementById(elementId);
312
- if (!element) {
313
- console.error("invalid html element: " + elementId);
314
- return;
315
- }
316
- cornerstone.enable(element);
317
-
318
- let series = { ...seriesStack };
319
-
320
- // default to 0 if multiframe and frameId is null
321
- // let frameId = series.isMultiframe ? 1 : null;
322
-
323
- larvitar_store.set("renderingStatus", [elementId, false]);
324
- let data = getSeriesData(series, defaultProps);
325
- if (!data.imageId) {
326
- console.warn("Error during renderImage: imageId has not been loaded yet.");
327
- return;
328
- }
329
-
330
- let renderPromise = new Promise(resolve => {
331
- // load and display one image (imageId)
332
- cornerstone.loadImage(data.imageId).then(function (image) {
333
- cornerstone.displayImage(element, image);
334
-
335
- if (series.layer) {
336
- // assign the image to its layer and return its id
337
- series.layer.id = cornerstone.addLayer(
338
- element,
339
- image,
340
- series.layer.options
341
- );
342
- }
343
-
344
- let viewport = cornerstone.getViewport(element);
345
-
346
- // window width and window level
347
- // are stored in specific dicom tags
348
- // (x00281050 and x00281051)
349
- // if not present check in image object
350
- data.ww = data.ww ? data.ww : image.windowWidth;
351
- data.wc = data.wc ? data.wc : image.windowCenter;
352
- data.defaultWW = data.defaultWW ? data.defaultWW : data.ww;
353
- data.defaultWC = data.defaultWC ? data.defaultWC : data.wc;
354
-
355
- cornerstone.fitToWindow(element);
356
-
357
- if (defaultProps &amp;&amp; has(defaultProps, "scale")) {
358
- viewport.scale = defaultProps["scale"];
359
- cornerstone.setViewport(element, viewport);
360
- }
361
-
362
- if (
363
- defaultProps &amp;&amp;
364
- has(defaultProps, "tr_x") &amp;&amp;
365
- has(defaultProps, "tr_y")
366
- ) {
367
- viewport.translation.x = defaultProps["tr_x"];
368
- viewport.translation.y = defaultProps["tr_y"];
369
- cornerstone.setViewport(element, viewport);
370
- }
371
-
372
- // color maps
373
- if (
374
- defaultProps &amp;&amp;
375
- has(defaultProps, "colormap") &amp;&amp;
376
- image.color == false
377
- ) {
378
- applyColorMap(defaultProps["colormap"]);
379
- }
380
-
381
- let storedViewport = cornerstone.getViewport(element);
382
- storeViewportData(
383
- image,
384
- elementId,
385
- data.imageIndex,
386
- data.numberOfSlices,
387
- data.rows,
388
- data.cols,
389
- data.spacing_x,
390
- data.spacing_y,
391
- data.thickness,
392
- storedViewport,
393
- data.defaultWW,
394
- data.defaultWC
395
- );
396
- larvitar_store.set("renderingStatus", [elementId, true]);
397
- let t1 = performance.now();
398
- console.log(`Call to renderImage took ${t1 - t0} milliseconds.`);
399
-
400
- let uri = cornerstoneWADOImageLoader.wadouri.parseImageId(
401
- data.imageId
402
- ).url;
403
- cornerstoneWADOImageLoader.wadouri.dataSetCacheManager.unload(uri);
404
- image = null;
405
- series = null;
406
- data = null;
407
- resolve();
408
- });
409
- });
410
-
411
- csToolsCreateStack(element, series.imageIds, data.imageIndex - 1);
412
- toggleMouseToolsListeners(elementId);
413
-
414
- return renderPromise;
415
- };
416
-
417
- /**
418
- * Update the cornerstone image with new imageIndex
419
- * @instance
420
- * @function updateImage
421
- * @param {Object} series - The original series data object
422
- * @param {String} elementId - The html div id used for rendering or its DOM HTMLElement
423
- * @param {Number} imageIndex - The index of the image to be rendered
424
- * @param {Boolean} cacheImage - A flag to handle image cache
425
- */
426
- export const updateImage = function (
427
- series,
428
- elementId,
429
- imageIndex,
430
- cacheImage
431
- ) {
432
- let element = isElement(elementId)
433
- ? elementId
434
- : document.getElementById(elementId);
435
- if (!element) {
436
- console.log("not element");
437
- return;
438
- }
439
- let index = imageIndex == 0 ? imageIndex : imageIndex - 1;
440
- if (cacheImage) {
441
- cornerstone
442
- .loadAndCacheImage(series.imageIds[index])
443
- .then(function (image) {
444
- cornerstone.displayImage(element, image);
445
- });
446
- } else {
447
- cornerstone.loadImage(series.imageIds[index]).then(function (image) {
448
- cornerstone.displayImage(element, image);
449
- });
450
- }
451
- };
452
-
453
- /**
454
- * Reset viewport values (scale, translation and wwwc)
455
- * @instance
456
- * @function resetViewports
457
- * @param {Array} elementIds - The array of hmtl div ids
458
- */
459
- export const resetViewports = function (elementIds) {
460
- each(elementIds, function (elementId) {
461
- let element = document.getElementById(elementId);
462
- if (!element) {
463
- console.error("invalid html element: " + elementId);
464
- return;
465
- }
466
- let viewport = cornerstone.getViewport(element);
467
- viewport.scale = larvitar_store.get(
468
- "viewports",
469
- elementId,
470
- "default",
471
- "scale"
472
- );
473
-
474
- viewport.rotation = larvitar_store.get(
475
- "viewports",
476
- elementId,
477
- "default",
478
- "rotation"
479
- );
480
- viewport.translation.x = larvitar_store.get(
481
- "viewports",
482
- elementId,
483
- "default",
484
- "translation",
485
- "x"
486
- );
487
- viewport.translation.y = larvitar_store.get(
488
- "viewports",
489
- elementId,
490
- "default",
491
- "translation",
492
- "y"
493
- );
494
- viewport.voi.windowWidth = larvitar_store.get(
495
- "viewports",
496
- elementId,
497
- "default",
498
- "voi",
499
- "windowWidth"
500
- );
501
- viewport.voi.windowCenter = larvitar_store.get(
502
- "viewports",
503
- elementId,
504
- "default",
505
- "voi",
506
- "windowCenter"
507
- );
508
-
509
- viewport.hflip = false;
510
- viewport.vflip = false;
511
- viewport.invert = false;
512
-
513
- cornerstone.setViewport(element, viewport);
514
- cornerstone.fitToWindow(element);
515
- cornerstone.updateImage(element);
516
-
517
- larvitar_store.set("scale", [elementId, viewport.scale]);
518
- larvitar_store.set("rotation", [elementId, viewport.rotation]);
519
- larvitar_store.set("translation", [
520
- elementId,
521
- viewport.translation.x,
522
- viewport.translation.y
523
- ]);
524
- larvitar_store.set("contrast", [
525
- elementId,
526
- viewport.voi.windowWidth,
527
- viewport.voi.windowCenter
528
- ]);
529
- });
530
- };
531
-
532
- /**
533
- * Update viewport data in store
534
- * @instance
535
- * @function updateViewportData
536
- * @param {String} elementId - The html div id used for rendering or its DOM HTMLElement
537
- * @param {Object} viewportData - The new viewport data
538
- */
539
- export const updateViewportData = function (
540
- elementId,
541
- viewportData,
542
- activeTool
543
- ) {
544
- let element = isElement(elementId)
545
- ? elementId
546
- : document.getElementById(elementId);
547
- if (!element) {
548
- console.error("invalid html element: " + elementId);
549
- return;
550
- }
551
- switch (activeTool) {
552
- case "Wwwc":
553
- case "WwwcRegion":
554
- // sync viewports if needed
555
- let elements = cornerstone.getEnabledElements();
556
- each(elements, function (el) {
557
- larvitar_store.set("contrast", [
558
- el.element.id,
559
- viewportData.voi.windowWidth,
560
- viewportData.voi.windowCenter
561
- ]);
562
- });
563
- break;
564
- case "Pan":
565
- larvitar_store.set("translation", [
566
- elementId,
567
- viewportData.translation.x,
568
- viewportData.translation.y
569
- ]);
570
- break;
571
- case "Zoom":
572
- larvitar_store.set("scale", [elementId, viewportData.scale]);
573
- break;
574
- case "Rotate":
575
- larvitar_store.set("rotation", [elementId, viewportData.rotation]);
576
- break;
577
- default:
578
- break;
579
- }
580
- };
581
-
582
- /**
583
- * Store the viewport data into internal storage
584
- * @instance
585
- * @function storeViewportData
586
- * @param {Object} image - The cornerstone image frame
587
- * @param {String} elementId - The html div id used for rendering
588
- * @param {Number} imageIndex - The index of the image
589
- * @param {Number} numberOfSlices - The number of slices of the series
590
- * @param {Number} rows - The number of rows of the image
591
- * @param {Number} cols - The number of columns of the image
592
- * @param {Number} spacing_x - The spacing value for x axis
593
- * @param {Number} spacing_y - The spacing value for y direction
594
- * @param {Number} thickness - The thickness value between slices
595
- * @param {String} viewport - The viewport tag name
596
- * @param {Number} defaultWW - The default WW value
597
- * @param {Number} defaultWC - The default WC value
598
- */
599
- export const storeViewportData = function (
600
- image,
601
- elementId,
602
- imageIndex,
603
- numberOfSlices,
604
- rows,
605
- cols,
606
- spacing_x,
607
- spacing_y,
608
- thickness,
609
- viewport,
610
- defaultWW,
611
- defaultWC
612
- ) {
613
- larvitar_store.set("dimensions", [elementId, rows, cols]);
614
- larvitar_store.set("spacing", [elementId, spacing_x, spacing_y]);
615
- larvitar_store.set("thickness", [elementId, thickness]);
616
- larvitar_store.set("minPixelValue", [elementId, image.minPixelValue]);
617
- larvitar_store.set("maxPixelValue", [elementId, image.maxPixelValue]);
618
- larvitar_store.set("minSliceId", [elementId, 1]);
619
- larvitar_store.set("sliceId", [elementId, imageIndex]);
620
- larvitar_store.set("maxSliceId", [elementId, numberOfSlices]);
621
- larvitar_store.set("defaultViewport", [
622
- elementId,
623
- viewport.scale,
624
- viewport.rotation,
625
- viewport.translation.x,
626
- viewport.translation.y,
627
- defaultWW,
628
- defaultWC
629
- ]);
630
- larvitar_store.set("scale", [elementId, viewport.scale]);
631
- larvitar_store.set("rotation", [elementId, viewport.rotation]);
632
- larvitar_store.set("translation", [
633
- elementId,
634
- viewport.translation.x,
635
- viewport.translation.y
636
- ]);
637
- larvitar_store.set("contrast", [
638
- elementId,
639
- viewport.voi.windowWidth,
640
- viewport.voi.windowCenter
641
- ]);
642
- };
643
-
644
- /**
645
- * Invert pixels of an image
646
- * @instance
647
- * @function invertImage
648
- * @param {Object} elementId - The html div id used for rendering or its DOM HTMLElement
649
- */
650
- export const invertImage = function (elementId) {
651
- let element = isElement(elementId)
652
- ? elementId
653
- : document.getElementById(elementId);
654
- if (!element) {
655
- console.error("invalid html element: " + elementId);
656
- return;
657
- }
658
- let viewport = cornerstone.getViewport(element);
659
- viewport.invert = !viewport.invert;
660
- cornerstone.setViewport(element, viewport);
661
- };
662
-
663
- /**
664
- * Flip image around horizontal axis
665
- * @instance
666
- * @function flipImageHorizontal
667
- * @param {Object} elementId - The html div id used for rendering or its DOM HTMLElement
668
- */
669
- export const flipImageHorizontal = function (elementId) {
670
- let element = isElement(elementId)
671
- ? elementId
672
- : document.getElementById(elementId);
673
- if (!element) {
674
- console.error("invalid html element: " + elementId);
675
- return;
676
- }
677
- let viewport = cornerstone.getViewport(element);
678
- viewport.hflip = !viewport.hflip;
679
- cornerstone.setViewport(element, viewport);
680
- };
681
-
682
- /**
683
- * Flip image around vertical axis
684
- * @instance
685
- * @function flipImageVertical
686
- * @param {Object} elementId - The html div id used for rendering or its DOM HTMLElement
687
- */
688
- export const flipImageVertical = function (elementId) {
689
- let element = isElement(elementId)
690
- ? elementId
691
- : document.getElementById(elementId);
692
- if (!element) {
693
- console.error("invalid html element: " + elementId);
694
- return;
695
- }
696
- let viewport = cornerstone.getViewport(element);
697
- viewport.vflip = !viewport.vflip;
698
- cornerstone.setViewport(element, viewport);
699
- };
700
-
701
- /**
702
- * Rotate image by 90° in left direction
703
- * @instance
704
- * @function rotateImageLeft
705
- * @param {Object} elementId - The html div id used for rendering or its DOM HTMLElement
706
- */
707
- export const rotateImageLeft = function (elementId) {
708
- let element = isElement(elementId)
709
- ? elementId
710
- : document.getElementById(elementId);
711
- if (!element) {
712
- console.error("invalid html element: " + elementId);
713
- return;
714
- }
715
- let viewport = cornerstone.getViewport(element);
716
- viewport.rotation -= 90;
717
- cornerstone.setViewport(element, viewport);
718
- };
719
-
720
- /**
721
- * Rotate image by 90° in right direction
722
- * @instance
723
- * @function rotateImageRight
724
- * @param {Object} elementId - The html div id used for rendering or its DOM HTMLElement
725
- */
726
- export const rotateImageRight = function (elementId) {
727
- let element = isElement(elementId)
728
- ? elementId
729
- : document.getElementById(elementId);
730
- if (!element) {
731
- console.error("invalid html element: " + elementId);
732
- return;
733
- }
734
- let viewport = cornerstone.getViewport(element);
735
- viewport.rotation += 90;
736
- cornerstone.setViewport(element, viewport);
737
- };
738
-
739
- /* Internal module functions */
740
-
741
- /**
742
- * Get series metadata from default props and series' metadata
743
- * @instance
744
- * @function getSeriesData
745
- * @param {Object} series - The parsed data series
746
- * @param {Object} defaultProps - Optional default properties
747
- * @return {Object} data - A data dictionary with parsed tags' values
748
- */
749
- let getSeriesData = function (series, defaultProps) {
750
- let data = {};
751
- // image index
752
- if (series.isMultiframe) {
753
- data.numberOfSlices = series.imageIds.length;
754
- data.imageIndex = 1;
755
- data.imageId = series.imageIds[0];
756
- } else {
757
- data.numberOfSlices =
758
- defaultProps &amp;&amp; has(defaultProps, "numberOfSlices")
759
- ? defaultProps["numberOfSlices"]
760
- : series.imageIds.length;
761
-
762
- data.imageIndex =
763
- defaultProps &amp;&amp;
764
- has(defaultProps, "sliceNumber") &amp;&amp;
765
- defaultProps["sliceNumber"] &lt;= data.numberOfSlices
766
- ? defaultProps["sliceNumber"]
767
- : Math.floor(data.numberOfSlices / 2);
768
-
769
- data.imageId =
770
- data.imageIndex > 0
771
- ? series.imageIds[data.imageIndex - 1]
772
- : series.imageIds[0];
773
- }
774
-
775
- // rows, cols and x y z spacing
776
- data.rows = series.instances[series.imageIds[0]].metadata["x00280010"];
777
- data.cols = series.instances[series.imageIds[0]].metadata["x00280011"];
778
- data.thickness = series.instances[series.imageIds[0]].metadata["x00180050"];
779
- data.spacing_x = series.instances[series.imageIds[0]].metadata["x00280030"]
780
- ? series.instances[series.imageIds[0]].metadata["x00280030"][0]
781
- : null;
782
- data.spacing_y = series.instances[series.imageIds[0]].metadata["x00280030"]
783
- ? series.instances[series.imageIds[0]].metadata["x00280030"][1]
784
- : null;
785
-
786
- // window center and window width
787
- data.wc =
788
- defaultProps &amp;&amp; has(defaultProps, "wc")
789
- ? defaultProps["wc"]
790
- : series.instances[series.imageIds[0]].metadata["x00281050"];
791
-
792
- data.ww =
793
- defaultProps &amp;&amp; has(defaultProps, "ww")
794
- ? defaultProps["ww"]
795
- : series.instances[series.imageIds[0]].metadata["x00281051"];
796
-
797
- // default values for reset
798
- data.defaultWW =
799
- defaultProps &amp;&amp; has(defaultProps, "defaultWW")
800
- ? defaultProps["defaultWW"]
801
- : data.ww;
802
- data.defaultWC =
803
- defaultProps &amp;&amp; has(defaultProps, "defaultWC")
804
- ? defaultProps["defaultWC"]
805
- : data.wc;
806
-
807
- if (data.rows == null || data.cols == null) {
808
- console.error("invalid image metadata");
809
- larvitar_store.set("errorLog", "Invalid Image Metadata");
810
- return;
811
- } else {
812
- larvitar_store.set("errorLog", "");
813
- }
814
-
815
- return data;
816
- };
817
- </code></pre>
818
- </article>
819
- </section>
820
-
821
-
822
-
823
-
824
-
825
-
826
- </div>
827
-
828
- <br class="clear">
829
-
830
- <footer>
831
- Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 3.6.7</a> using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
832
- </footer>
833
-
834
- <script>prettyPrint();</script>
835
- <script src="scripts/polyfill.js"></script>
836
- <script src="scripts/linenumber.js"></script>
837
-
838
- <script src="scripts/search.js" defer></script>
839
-
840
-
841
- <script src="scripts/collapse.js" defer></script>
842
-
843
-
844
- </body>
845
- </html>