npm - larvitar - Versions diffs - 1.2.0 → 1.2.1 - Mend

larvitar 1.2.0 → 1.2.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (190) hide show

package/.github/workflows/build-docs.yml +1 -1
package/.github/workflows/deploy.yml +4 -4
package/README.md +3 -3
package/modules/vuex/larvitar.js +1 -0
package/package.json +1 -1
package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +0 -171
package/docs/documentation/Tools.Annotation.ContoursTool.html +0 -218
package/docs/documentation/Tools.Annotation.DiameterTool.html +0 -219
package/docs/documentation/Tools.Annotation.SeedsTool.html +0 -214
package/docs/documentation/Tools.Brush.BrushTool.html +0 -218
package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +0 -218
package/docs/documentation/Tools.PolylineScissorsTool.html +0 -218
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff2 +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +0 -978
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +0 -1049
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
package/docs/documentation/global.html +0 -1303
package/docs/documentation/imageAnonymization.js.html +0 -245
package/docs/documentation/imageColormaps.js.html +0 -283
package/docs/documentation/imageContours.js.html +0 -278
package/docs/documentation/imageIo.js.html +0 -291
package/docs/documentation/imageLayers.js.html +0 -188
package/docs/documentation/imageLoading.js.html +0 -297
package/docs/documentation/imageParsing.js.html +0 -385
package/docs/documentation/imagePresets.js.html +0 -207
package/docs/documentation/imageRendering.js.html +0 -849
package/docs/documentation/imageReslice.js.html +0 -162
package/docs/documentation/imageStore.js.html +0 -360
package/docs/documentation/imageTools.js.html +0 -784
package/docs/documentation/imageUtils.js.html +0 -1609
package/docs/documentation/image_colormaps.js.html +0 -283
package/docs/documentation/image_contours.js.html +0 -279
package/docs/documentation/image_io.js.html +0 -288
package/docs/documentation/image_layers.js.html +0 -188
package/docs/documentation/image_loading.js.html +0 -294
package/docs/documentation/image_parsing.js.html +0 -391
package/docs/documentation/image_presets.js.html +0 -207
package/docs/documentation/image_rendering.js.html +0 -845
package/docs/documentation/image_reslice.js.html +0 -164
package/docs/documentation/image_store.js.html +0 -359
package/docs/documentation/image_tools.js.html +0 -792
package/docs/documentation/image_utils.js.html +0 -1609
package/docs/documentation/index.html +0 -175
package/docs/documentation/loaders_commonLoader.js.html +0 -306
package/docs/documentation/loaders_dicomLoader.js.html +0 -130
package/docs/documentation/loaders_fileLoader.js.html +0 -155
package/docs/documentation/loaders_multiframeLoader.js.html +0 -443
package/docs/documentation/loaders_niftiLoader.js.html +0 -150
package/docs/documentation/loaders_nrrdLoader.js.html +0 -545
package/docs/documentation/loaders_resliceLoader.js.html +0 -258
package/docs/documentation/module-imaging_contours.html +0 -954
package/docs/documentation/module-imaging_imageAnonymization.html +0 -544
package/docs/documentation/module-imaging_imageColormaps.html +0 -1012
package/docs/documentation/module-imaging_imageContours.html +0 -954
package/docs/documentation/module-imaging_imageIo.html +0 -1057
package/docs/documentation/module-imaging_imageLayers.html +0 -904
package/docs/documentation/module-imaging_imageLoading.html +0 -1301
package/docs/documentation/module-imaging_imageParsing.html +0 -1356
package/docs/documentation/module-imaging_imagePresets.html +0 -679
package/docs/documentation/module-imaging_imageRendering.html +0 -3223
package/docs/documentation/module-imaging_imageReslice.html +0 -413
package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +0 -284
package/docs/documentation/module-imaging_imageStore.html +0 -1560
package/docs/documentation/module-imaging_imageTools.html +0 -3617
package/docs/documentation/module-imaging_imageUtils.html +0 -7253
package/docs/documentation/module-imaging_io.html +0 -1057
package/docs/documentation/module-imaging_layers.html +0 -904
package/docs/documentation/module-imaging_loading.html +0 -1301
package/docs/documentation/module-imaging_parsing.html +0 -1375
package/docs/documentation/module-imaging_presets.html +0 -679
package/docs/documentation/module-imaging_rendering.html +0 -8094
package/docs/documentation/module-imaging_reslice.html +0 -411
package/docs/documentation/module-imaging_store-Larvitar_Store.html +0 -284
package/docs/documentation/module-imaging_store.html +0 -1537
package/docs/documentation/module-imaging_strategies_eraseFreehand.html +0 -708
package/docs/documentation/module-imaging_strategies_fillFreehand.html +0 -708
package/docs/documentation/module-imaging_tools.html +0 -3617
package/docs/documentation/module-imaging_tools_custom_contourTool.html +0 -207
package/docs/documentation/module-imaging_tools_custom_diameterTool.html +0 -205
package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +0 -205
package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +0 -203
package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +0 -684
package/docs/documentation/module-imaging_tools_default.html +0 -205
package/docs/documentation/module-imaging_tools_interaction.html +0 -530
package/docs/documentation/module-imaging_tools_io.html +0 -832
package/docs/documentation/module-imaging_tools_main.html +0 -2028
package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +0 -567
package/docs/documentation/module-imaging_tools_segmentation.html +0 -3586
package/docs/documentation/module-imaging_tools_state.html +0 -494
package/docs/documentation/module-imaging_utils.html +0 -7253
package/docs/documentation/module-loaders_commonLoader.html +0 -1313
package/docs/documentation/module-loaders_dicomLoader.html +0 -522
package/docs/documentation/module-loaders_fileLoader.html +0 -593
package/docs/documentation/module-loaders_multiframeLoader.html +0 -1169
package/docs/documentation/module-loaders_niftiLoader.html +0 -565
package/docs/documentation/module-loaders_nrrdLoader.html +0 -1459
package/docs/documentation/module-loaders_resliceLoader.html +0 -590
package/docs/documentation/module-monitors_memory.html +0 -980
package/docs/documentation/module-tools_default.html +0 -740
package/docs/documentation/module.exports_module.exports.html +0 -203
package/docs/documentation/monitors_memory.js.html +0 -189
package/docs/documentation/parsers_nrrd.js.html +0 -569
package/docs/documentation/scripts/collapse.js +0 -20
package/docs/documentation/scripts/linenumber.js +0 -25
package/docs/documentation/scripts/nav.js +0 -12
package/docs/documentation/scripts/polyfill.js +0 -4
package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +0 -202
package/docs/documentation/scripts/prettify/lang-css.js +0 -2
package/docs/documentation/scripts/prettify/prettify.js +0 -28
package/docs/documentation/scripts/search.js +0 -83
package/docs/documentation/styles/jsdoc.css +0 -765
package/docs/documentation/styles/prettify.css +0 -80
package/docs/documentation/tools_contourTool.js.html +0 -1963
package/docs/documentation/tools_custom_contourTool.js.html +0 -1968
package/docs/documentation/tools_custom_diameterTool.js.html +0 -225
package/docs/documentation/tools_custom_editMaskTool.js.html +0 -225
package/docs/documentation/tools_custom_polylineScissorsTool.js.html +0 -143
package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +0 -245
package/docs/documentation/tools_default.js.html +0 -576
package/docs/documentation/tools_diameterTool.js.html +0 -219
package/docs/documentation/tools_editMaskTool.js.html +0 -219
package/docs/documentation/tools_interaction.js.html +0 -258
package/docs/documentation/tools_io.js.html +0 -297
package/docs/documentation/tools_main.js.html +0 -443
package/docs/documentation/tools_polygonSegmentationMixin.js.html +0 -329
package/docs/documentation/tools_polylineScissorsTool.js.html +0 -136
package/docs/documentation/tools_seedTool.js.html +0 -423
package/docs/documentation/tools_segmentation.js.html +0 -558
package/docs/documentation/tools_state.js.html +0 -163
package/docs/documentation/tools_strategies_eraseFreehand.js.html +0 -160
package/docs/documentation/tools_strategies_fillFreehand.js.html +0 -163
package/docs/documentation/tools_thresholdsBrushTool.js.html +0 -239
package/docs/documentation/tools_tools.default.js.html +0 -569
package/docs/documentation/tools_tools.interaction.js.html +0 -251
package/docs/documentation/tools_tools.io.js.html +0 -288
package/docs/documentation/tools_tools.main.js.html +0 -442
package/docs/documentation/tools_tools.segmentation.js.html +0 -445
package/docs/documentation/tools_tools.state.js.html +0 -157
package/docs/examples/base.html +0 -170
package/docs/examples/colorMaps.html +0 -181
package/docs/examples/defaultTools.html +0 -246
package/docs/examples/demo/anon1 +0 -0
package/docs/examples/demo/anon10 +0 -0
package/docs/examples/demo/anon11 +0 -0
package/docs/examples/demo/anon12 +0 -0
package/docs/examples/demo/anon13 +0 -0
package/docs/examples/demo/anon14 +0 -0
package/docs/examples/demo/anon15 +0 -0
package/docs/examples/demo/anon16 +0 -0
package/docs/examples/demo/anon17 +0 -0
package/docs/examples/demo/anon18 +0 -0
package/docs/examples/demo/anon19 +0 -0
package/docs/examples/demo/anon2 +0 -0
package/docs/examples/demo/anon20 +0 -0
package/docs/examples/demo/anon21 +0 -0
package/docs/examples/demo/anon22 +0 -0
package/docs/examples/demo/anon23 +0 -0
package/docs/examples/demo/anon24 +0 -0
package/docs/examples/demo/anon3 +0 -0
package/docs/examples/demo/anon4 +0 -0
package/docs/examples/demo/anon5 +0 -0
package/docs/examples/demo/anon6 +0 -0
package/docs/examples/demo/anon7 +0 -0
package/docs/examples/demo/anon8 +0 -0
package/docs/examples/demo/anon9 +0 -0
package/docs/examples/demo/example.nrrd +0 -0
package/docs/examples/demo/segmentation.nrrd +0 -0
package/docs/examples/demo/xa_integris.dcm +0 -0
package/docs/examples/index.html +0 -129
package/docs/examples/larvitar.js +0 -108623
package/docs/examples/layers.html +0 -250
package/docs/examples/masks.html +0 -273
package/docs/examples/multiframe.html +0 -200
package/docs/examples/nrrd.html +0 -96
package/docs/examples/reslice.html +0 -174
package/docs/index.html +0 -92

package/docs/documentation/tools_seedTool.js.html DELETED Viewed

@@ -1,423 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
-<head>
-    <meta charset="utf-8">
-    <title>tools/seedTool.js - Larvitar</title>
-    <meta name="description" content="Dicom Image Toolkit for CornestoneJS" />
-        <meta name="keywords" content="imaging, dataviz, medical, cornerstone" />
-        <meta name="keyword" content="imaging, dataviz, medical, cornerstone" />
-    <script src="scripts/prettify/prettify.js"></script>
-    <script src="scripts/prettify/lang-css.js"></script>
-    <!--[if lt IE 9]>
-      <script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
-    <![endif]-->
-    <link type="text/css" rel="stylesheet" href="styles/prettify.css">
-    <link type="text/css" rel="stylesheet" href="styles/jsdoc.css">
-    <script src="scripts/nav.js" defer></script>
-    <meta name="viewport" content="width=device-width, initial-scale=1.0">
-</head>
-<body>
-<input type="checkbox" id="nav-trigger" class="nav-trigger" />
-<label for="nav-trigger" class="navicon-button x">
-  <div class="navicon"></div>
-</label>
-<label for="nav-trigger" class="overlay"></label>
-<nav >
-    <input type="text" id="nav-search" placeholder="Search" />
-    <h2><a href="index.html">Home</a></h2><h2><a href="https://github.com/dvisionlab/Larvitar" target="_blank" class="menu-item" id="repository" >Github repo</a></h2><h3>Classes</h3><ul><li><a href="module.exports_module.exports.html">module.exports#module.exports</a></li><li><a href="module-imaging_store-Larvitar_Store.html">imaging/store~Larvitar_Store</a></li><li><a href="Tools.Annotation.ContoursTool.html">Tools.Annotation.ContoursTool</a></li><li><a href="Tools.Annotation.DiameterTool.html">Tools.Annotation.DiameterTool</a></li><li><a href="Tools.Annotation.SeedsTool.html">Tools.Annotation.SeedsTool</a></li><li><a href="Tools.Brush.BrushTool.html">Tools.Brush.BrushTool</a></li><li><a href="Tools.Brush.ThresholdsBrushTool.html">Tools.Brush.ThresholdsBrushTool</a></li><li><a href="Tools.PolylineScissorsTool.html">Tools.PolylineScissorsTool</a></li></ul><h3>Modules</h3><ul><li><a href="module-imaging_contours.html">imaging/contours</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#extractSlicePoints">extractSlicePoints</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#populateContoursObject">populateContoursObject</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#~parseContours">parseContours</a></li></ul></li><li><a href="module-imaging_io.html">imaging/io</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_io.html#~buildData">buildData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#~buildHeader">buildHeader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#~buildVolume">buildVolume</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#~importNRRDImage">importNRRDImage</a></li></ul></li><li><a href="module-imaging_layers.html">imaging/layers</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#changeOpacityLayer">changeOpacityLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#getMainLayer">getMainLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#loadImageLayers">loadImageLayers</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#updateImageLayer">updateImageLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#~buildLayers">buildLayers</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#~loadLayers">loadLayers</a></li></ul></li><li><a href="module-imaging_loading.html">imaging/loading</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeFileImageLoader">initializeFileImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeImageLoader">initializeImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeWebImageLoader">initializeWebImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerMultiFrameImageLoader">registerMultiFrameImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerNRRDImageLoader">registerNRRDImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerResliceLoader">registerResliceLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#updateLoadedStack">updateLoadedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#~isNewInstance">isNewInstance</a></li></ul></li><li><a href="module-imaging_parsing.html">imaging/parsing</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpDataSet">dumpDataSet</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFiles">readFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#resetImageParsing">resetImageParsing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#~clearFileSystem">clearFileSystem</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#~dumpFile">dumpFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#~dumpFiles">dumpFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#~errorHandler">errorHandler</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#~parseNextFile">parseNextFile</a></li></ul></li><li><a href="module-imaging_presets.html">imaging/presets</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#getImagePresets">getImagePresets</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImageCustomPreset">setImageCustomPreset</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImagePreset">setImagePreset</a></li></ul></li><li><a href="module-imaging_rendering.html">imaging/rendering</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#.HSVToRGB">HSVToRGB</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#addColorMap">addColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#applyColorMap">applyColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#clearImageCache">clearImageCache</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#disableViewport">disableViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#fillPixelData">fillPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getColormapsList">getColormapsList</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#isElement">isElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#reloadImage">reloadImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderFrame">renderFrame</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderImage">renderImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resetViewports">resetViewports</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resizeViewport">resizeViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#storeViewportData">storeViewportData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#toggleMouseHandlers">toggleMouseHandlers</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#unloadViewport">unloadViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateImage">updateImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateViewportData">updateViewportData</a></li></ul></li><li></li><li><a href="module-imaging_reslice.html">imaging/reslice</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_reslice.html#cleanResliceStore">cleanResliceStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_reslice.html#resliceSeries">resliceSeries</a></li></ul></li><li><a href="module-imaging_store.html">imaging/store</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_store.html#.larvitar_store">larvitar_store</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_store.html#.initLarvitarStore">initLarvitarStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~addSeriesIds">addSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~addViewport">addViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~deleteViewport">deleteViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~disableVuex">disableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~enableVuex">enableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~get">get</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~removeSeriesIds">removeSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#~set">set</a></li></ul></li><li><a href="module-imaging_tools.html">imaging/tools</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addContoursTool">addContoursTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addDiameterTool">addDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addMaskEditingTool">addMaskEditingTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addSeedsTool">addSeedsTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addStackStateToElement">addStackStateToElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~addToolStateSingleSlice">addToolStateSingleSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~clearCornerstoneElements">clearCornerstoneElements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~clearMeasurements">clearMeasurements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~clearToolStateByName">clearToolStateByName</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~getCurrentMaskData">getCurrentMaskData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~getToolState">getToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~setSegmentationConfig">setSegmentationConfig</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~syncToolStack">syncToolStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~updateDiameterTool">updateDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#~updateStackToolState">updateStackToolState</a></li></ul></li><li><a href="module-imaging_utils.html">imaging/utils</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDate">formatDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDateTime">formatDateTime</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getCmprMetadata">getCmprMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTag">getDICOMTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTagCode">getDICOMTagCode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDistanceBetweenSlices">getDistanceBetweenSlices</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMaxPixelValue">getMaxPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMeanValue">getMeanValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMinPixelValue">getMinPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getNormalOrientation">getNormalOrientation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelRepresentation">getPixelRepresentation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelTypedArray">getPixelTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIOP">getReslicedIOP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIPP">getReslicedIPP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedMetadata">getReslicedMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedPixeldata">getReslicedPixeldata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedSliceLocation">getReslicedSliceLocation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedStack">getSortedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTagValue">getTagValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArray">getTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArrayFromDataType">getTypedArrayFromDataType</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isNegativeSign">isNegativeSign</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isStringVr">isStringVr</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isValidDate">isValidDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseAgeTag">parseAgeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTag">parseDateTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTimeTag">parseDateTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDICOMFileIDTag">parseDICOMFileIDTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parsePatientNameTag">parsePatientNameTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTag">parseTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTimeTag">parseTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteSignedArrays">permuteSignedArrays</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteValues">permuteValues</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#rand">rand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#randomId">randomId</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#remapVoxel">remapVoxel</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#sortStackCallback">sortStackCallback</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#spacingArray">spacingArray</a></li></ul></li><li><a href="module-loaders_commonLoader.html">loaders/commonLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getCustomImageId">getCustomImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getImageFrame">getImageFrame</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarImageLoader">getLarvitarImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarManager">getLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getSeriesData">getSeriesData</a></li></ul></li><li><a href="module-loaders_dicomLoader.html">loaders/dicomLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#cacheImages">cacheImages</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getDicomImageId">getDicomImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getSeriesDataFromDicomLoader">getSeriesDataFromDicomLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#populateDicomManager">populateDicomManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#removeSeriesFromDicomManager">removeSeriesFromDicomManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#resetDicomManager">resetDicomManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#resetImageLoader">resetImageLoader</a></li></ul></li><li><a href="module-loaders_fileLoader.html">loaders/fileLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#getFileImageId">getFileImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#populateFileManager">populateFileManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileLoader">resetFileLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileManager">resetFileManager</a></li></ul></li><li><a href="module-loaders_nrrdLoader.html">loaders/nrrdLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#buildNrrdImage">buildNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getImageIdFromSlice">getImageIdFromSlice</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdImageId">getNrrdImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdSerieDimensions">getNrrdSerieDimensions</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSeriesDataFromNrrdLoader">getSeriesDataFromNrrdLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSliceNumberFromImageId">getSliceNumberFromImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#loadNrrdImage">loadNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#removeSeriesFromNrrdManager">removeSeriesFromNrrdManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#resetNrrdLoader">resetNrrdLoader</a></li></ul></li><li><a href="module-loaders_resliceLoader.html">loaders/resliceLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#loadReslicedImage">loadReslicedImage</a></li></ul></li><li><a href="module-tools_default.html">tools/default</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-tools_default.html#~getDefaultToolsByType">getDefaultToolsByType</a></li><li data-type='method' style='display: none;'><a href="module-tools_default.html#~setDefaultToolsProps">setDefaultToolsProps</a></li></ul></li></ul><h3>Events</h3><ul><li><a href="ContoursTool.html#event:_drawingDoubleTapClickCallback">ContoursTool#_drawingDoubleTapClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDoubleClickCallback">ContoursTool#_drawingMouseDoubleClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDownCallback">ContoursTool#_drawingMouseDownCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDragCallback">ContoursTool#_drawingMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseMoveCallback">ContoursTool#_drawingMouseMoveCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseUpCallback">ContoursTool#_drawingMouseUpCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchDragCallback">ContoursTool#_drawingTouchDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchStartCallback">ContoursTool#_drawingTouchStartCallback</a></li><li><a href="ContoursTool.html#event:_editMouseDragCallback">ContoursTool#_editMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_editTouchDragCallback">ContoursTool#_editTouchDragCallback</a></li></ul><h3>Mixins</h3><ul><li><a href="Mixins.polygonSegmentationMixin%2520-%2520segmentation%2520operations%2520for%2520polyline.html">Mixins.polygonSegmentationMixin - segmentation operations for polyline</a></li></ul><h3>Global</h3><ul><li><a href="global.html#_checkIfDrawing">_checkIfDrawing</a></li><li><a href="global.html#_paint">_paint</a></li><li><a href="global.html#addDefaultTools">addDefaultTools</a></li><li><a href="global.html#addTool">addTool</a></li><li><a href="global.html#buildMultiFrameImage">buildMultiFrameImage</a></li><li><a href="global.html#configureCornerstoneToolsSettings">configureCornerstoneToolsSettings</a></li><li><a href="global.html">createCustomImage</a></li><li><a href="global.html#csToolsCreateStack">csToolsCreateStack</a></li><li><a href="global.html#csToolsUpdateImageIndex">csToolsUpdateImageIndex</a></li><li><a href="global.html#download">download</a></li><li><a href="global.html#eraseFreehand">eraseFreehand</a></li><li><a href="global.html#eraseInsideFreehand">eraseInsideFreehand</a></li><li><a href="global.html#eraseOutsideFreehand">eraseOutsideFreehand</a></li><li><a href="global.html#exportAnnotations">exportAnnotations</a></li><li><a href="global.html#extractToolInfo">extractToolInfo</a></li><li><a href="global.html#fillFreehand">fillFreehand</a></li><li><a href="global.html#fillInsideFreehand">fillInsideFreehand</a></li><li><a href="global.html#fillOutsideFreehand">fillOutsideFreehand</a></li><li><a href="global.html#generateCSV">generateCSV</a></li><li><a href="global.html#getCircleWithThreshold">getCircleWithThreshold</a></li><li><a href="global.html">getMultiFrameImageId</a></li><li><a href="global.html">getSeriesDataFromMultiFrameLoaderLoader</a></li><li><a href="global.html#initializeCSTools">initializeCSTools</a></li><li><a href="global.html#isDrawing">isDrawing</a></li><li><a href="global.html#isToolMissing">isToolMissing</a></li><li><a href="global.html#loadAnnotations">loadAnnotations</a></li><li><a href="global.html#loadMultiFrameImage">loadMultiFrameImage</a></li><li><a href="global.html#NRRD_TYPES_TO_TYPEDARRAY">NRRD_TYPES_TO_TYPEDARRAY</a></li><li><a href="global.html">parse</a></li><li><a href="global.html#renderToolData">renderToolData</a></li><li><a href="global.html">resetMultiFrameLoader</a></li><li><a href="global.html#restoreToolState">restoreToolState</a></li><li><a href="global.html#saveAnnotations">saveAnnotations</a></li><li><a href="global.html#saveToolState">saveToolState</a></li><li><a href="global.html">setPixelDataType</a></li><li><a href="global.html#setToolActive">setToolActive</a></li><li><a href="global.html#setToolDisabled">setToolDisabled</a></li><li><a href="global.html#setToolEnabled">setToolEnabled</a></li><li><a href="global.html#setToolPassive">setToolPassive</a></li></ul>
-</nav>
-<div id="main">
-    <h1 class="page-title">tools/seedTool.js</h1>
-    <section>
-        <article>
-            <pre class="prettyprint source linenums"><code>// external libraries
-import csTools from "cornerstone-tools";
-import { each, cloneDeep } from "lodash";
-// internal libraries
-import { remapVoxel } from "../image_utils";
-import { addToolStateSingleSlice, setToolEnabled } from "../image_tools";
-import { getSliceNumberFromImageId } from "../loaders/nrrdLoader";
-// cornerstone tools imports
-const BaseAnnotationTool = csTools.importInternal("base/BaseAnnotationTool");
-// State
-const getToolState = csTools.getToolState;
-// Drawing
-const getNewContext = csTools.importInternal("drawing/getNewContext");
-const draw = csTools.importInternal("drawing/draw");
-const drawTextBox = csTools.importInternal("drawing/drawTextBox");
-const drawCircle = csTools.importInternal("drawing/drawCircle");
-// Utilities
-const getRGBPixels = csTools.importInternal("util/getRGBPixels");
-const calculateSUV = csTools.importInternal("util/calculateSUV");
-const probeCursor = csTools.importInternal("util/probeCursor");
-const getLogger = csTools.importInternal("util/getLogger");
-const throttle = csTools.importInternal("util/throttle");
-const logger = getLogger("tools:annotation:ProbeTool");
-// internal constants
-const seedLabels = {
-  segmentation_01: "Aorta",
-  segmentation_02: "Aneurysm",
-  segmentation_03: "Carrefour",
-  regionGrowing: "regionGrowing"
-};
-/**
- * @public
- * @class SeedsTool
- * @memberof Tools.Annotation
- * @classdesc Tool which provides cohordinates of the picked poin
- * @extends Tools.Base.BaseAnnotationTool
- */
-export class SeedsTool extends BaseAnnotationTool {
-  constructor(props = {}) {
-    const defaultProps = {
-      name: "Seeds",
-      supportedInteractionTypes: ["Mouse"],
-      svgCursor: probeCursor
-    };
-    super(props, defaultProps);
-    if (props.initialize) {
-      this.initializeTool(props.preLoadSeeds, props.initViewport);
-    }
-    this.throttledUpdateCachedStats = throttle(this.updateCachedStats, 110);
-  }
-  initializeTool(seeds, elementId) {
-    let element = document.getElementById(elementId);
-    each(seeds, seed => {
-      let change = {
-        visible: true,
-        active: true,
-        invalidated: true,
-        color: seed.color,
-        name: seed.tag,
-        slice: seed.native_k,
-        handles: {
-          end: {
-            x: seed.native_i,
-            y: seed.native_j,
-            highlight: true,
-            active: true
-          }
-        }
-      };
-      let sliceNumber = seed.native_k;
-      // add to master viewport
-      addToolStateSingleSlice(element, this.name, change, sliceNumber);
-      // sync remaining viewports
-      this.syncViewports(elementId, change, sliceNumber);
-    });
-    csTools.external.cornerstone.updateImage(element);
-  }
-  createNewMeasurement(eventData) {
-    if (eventData.event.srcElement.localName != "canvas") {
-      return;
-    }
-    const goodEventData =
-      eventData &amp;&amp; eventData.currentPoints &amp;&amp; eventData.currentPoints.image;
-    if (!goodEventData) {
-      logger.error(
-        `required eventData not supplied to tool ${this.name}'s createNewMeasurement`
-      );
-      return;
-    }
-    var res = {
-      visible: true,
-      active: true,
-      invalidated: true,
-      color: this.options.color,
-      name: this.options.seed_name,
-      slice: getSliceNumberFromImageId(
-        eventData.image.imageId,
-        eventData.element.id
-      ),
-      handles: {
-        end: {
-          x: eventData.currentPoints.image.x,
-          y: eventData.currentPoints.image.y,
-          highlight: true,
-          active: true
-        }
-      },
-      native_i: 0,
-      native_j: 0,
-      native_k: 0
-    };
-    let sliceNumber = getSliceNumberFromImageId(
-      eventData.image.imageId,
-      eventData.element.id
-    );
-    // store native coordinates
-    this.storeNativeCoordinates(res, eventData.element.id, sliceNumber);
-    // sync all the viewports
-    this.syncViewports(eventData.element.id, res, sliceNumber);
-    // optionally set data in store
-    // set mode to "enabled"
-    setToolEnabled(this.name);
-    return res;
-  }
-  /**
-   *
-   *
-   * @param {*} element
-   * @param {*} data
-   * @param {*} coords
-   * @returns {Boolean}
-   */
-  pointNearTool(element, data, coords) {
-    const hasEndHandle = data &amp;&amp; data.handles &amp;&amp; data.handles.end;
-    const validParameters = hasEndHandle;
-    if (!validParameters) {
-      logger.warn(
-        `invalid parameters supplied to tool ${this.name}'s pointNearTool`
-      );
-    }
-    if (!validParameters || data.visible === false) {
-      return false;
-    }
-    const probeCoords = csTools.external.cornerstone.pixelToCanvas(
-      element,
-      data.handles.end
-    );
-    return (
-      csTools.external.cornerstoneMath.point.distance(probeCoords, coords) &lt; 5
-    );
-  }
-  updateCachedStats(image, element, data) {
-    const x = Math.round(data.handles.end.x);
-    const y = Math.round(data.handles.end.y);
-    const stats = {};
-    if (x >= 0 &amp;&amp; y >= 0 &amp;&amp; x &lt; image.columns &amp;&amp; y &lt; image.rows) {
-      stats.x = x;
-      stats.y = y;
-      if (image.color) {
-        stats.storedPixels = getRGBPixels(element, x, y, 1, 1);
-      } else {
-        stats.storedPixels = csTools.external.cornerstone.getStoredPixels(
-          element,
-          x,
-          y,
-          1,
-          1
-        );
-        stats.sp = stats.storedPixels[0];
-        stats.mo = stats.sp * image.slope + image.intercept;
-        stats.suv = calculateSUV(image, stats.sp);
-        stats.color = data.color || this.options.color;
-        stats.name = data.name || this.options.seed_name;
-      }
-    }
-    data.cachedStats = stats;
-    data.invalidated = false;
-  }
-  renderToolData(evt) {
-    const eventData = evt.detail;
-    const toolData = getToolState(evt.currentTarget, this.name);
-    if (!toolData) {
-      return;
-    }
-    // We have tool data for this element - iterate over each one and draw it
-    const context = getNewContext(eventData.canvasContext.canvas);
-    const { image, element } = eventData;
-    for (let i = 0; i &lt; toolData.data.length; i++) {
-      const data = toolData.data[i];
-      if (data.visible === false) {
-        continue;
-      }
-      draw(context, context => {
-        const center = data.handles.end;
-        // Update textbox stats
-        if (data.invalidated === true) {
-          if (data.cachedStats) {
-            this.throttledUpdateCachedStats(image, element, data);
-          } else {
-            this.updateCachedStats(image, element, data);
-          }
-        }
-        const { x, y, color, name } = data.cachedStats;
-        let text;
-        if (x >= 0 &amp;&amp; y >= 0 &amp;&amp; x &lt; image.columns &amp;&amp; y &lt; image.rows) {
-          text = this.getLabelText(name);
-          // Coords for text
-          const coords = {
-            // Translate the x/y away from the cursor
-            x: data.handles.end.x + 3,
-            y: data.handles.end.y - 3
-          };
-          const textCoords = csTools.external.cornerstone.pixelToCanvas(
-            eventData.element,
-            coords
-          );
-          drawTextBox(context, text, textCoords.x, textCoords.y, color);
-          drawCircle(context, element, center, this.options.radius || 3, {
-            color: color,
-            fillStyle: color
-          });
-        }
-      });
-    }
-  }
-  getLabelText(name) {
-    // let text = (text = ` ${name}`);
-    let text = seedLabels[name];
-    return text;
-  }
-  storeNativeCoordinates(input, inputViewportId, frame) {
-    let native = remapVoxel(
-      [
-        Math.floor(input.handles.end.x),
-        Math.floor(input.handles.end.y),
-        parseInt(frame)
-      ],
-      inputViewportId,
-      "axial"
-    );
-    input.native_i = native[0];
-    input.native_j = native[1];
-    input.native_k = native[2];
-  }
-  syncViewports(pickingViewportId, change, sliceNumber) {
-    let enabledElements = csTools.external.cornerstone.getEnabledElements();
-    var from = pickingViewportId;
-    each(enabledElements, el => {
-      if (el.element.id == pickingViewportId) {
-        return;
-      }
-      let remapped = this.getRemappedChange(
-        change,
-        sliceNumber,
-        from,
-        el.element.id
-      );
-      addToolStateSingleSlice(
-        el.element,
-        this.name,
-        remapped.change,
-        remapped.sliceNumber
-      );
-      csTools.external.cornerstone.updateImage(el.element);
-    });
-  }
-  getRemappedChange(input, frame, fromOrientation, toOrientation) {
-    let ijk = remapVoxel(
-      [
-        Math.floor(input.handles.end.x),
-        Math.floor(input.handles.end.y),
-        parseInt(frame)
-      ],
-      fromOrientation,
-      toOrientation
-    );
-    let output = cloneDeep(input);
-    output.handles.end.x = ijk[0];
-    output.handles.end.y = ijk[1];
-    return {
-      change: output,
-      sliceNumber: ijk[2]
-    };
-  }
-}
-</code></pre>
-        </article>
-    </section>
-</div>
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