npm - larvitar - Versions diffs - 1.2.0 → 1.2.1 - Mend

larvitar 1.2.0 → 1.2.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (190) hide show

package/.github/workflows/build-docs.yml +1 -1
package/.github/workflows/deploy.yml +4 -4
package/README.md +3 -3
package/modules/vuex/larvitar.js +1 -0
package/package.json +1 -1
package/docs/documentation/Mixins.polygonSegmentationMixin%20-%20segmentation%20operations%20for%20polyline.html +0 -171
package/docs/documentation/Tools.Annotation.ContoursTool.html +0 -218
package/docs/documentation/Tools.Annotation.DiameterTool.html +0 -219
package/docs/documentation/Tools.Annotation.SeedsTool.html +0 -214
package/docs/documentation/Tools.Brush.BrushTool.html +0 -218
package/docs/documentation/Tools.Brush.ThresholdsBrushTool.html +0 -218
package/docs/documentation/Tools.PolylineScissorsTool.html +0 -218
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Bold.woff2 +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.eot +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.ttf +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff +0 -0
package/docs/documentation/fonts/Montserrat/Montserrat-Regular.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.svg +0 -978
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-light-webfont.woff2 +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.eot +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.svg +0 -1049
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.ttf +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff +0 -0
package/docs/documentation/fonts/Source-Sans-Pro/sourcesanspro-regular-webfont.woff2 +0 -0
package/docs/documentation/global.html +0 -1303
package/docs/documentation/imageAnonymization.js.html +0 -245
package/docs/documentation/imageColormaps.js.html +0 -283
package/docs/documentation/imageContours.js.html +0 -278
package/docs/documentation/imageIo.js.html +0 -291
package/docs/documentation/imageLayers.js.html +0 -188
package/docs/documentation/imageLoading.js.html +0 -297
package/docs/documentation/imageParsing.js.html +0 -385
package/docs/documentation/imagePresets.js.html +0 -207
package/docs/documentation/imageRendering.js.html +0 -849
package/docs/documentation/imageReslice.js.html +0 -162
package/docs/documentation/imageStore.js.html +0 -360
package/docs/documentation/imageTools.js.html +0 -784
package/docs/documentation/imageUtils.js.html +0 -1609
package/docs/documentation/image_colormaps.js.html +0 -283
package/docs/documentation/image_contours.js.html +0 -279
package/docs/documentation/image_io.js.html +0 -288
package/docs/documentation/image_layers.js.html +0 -188
package/docs/documentation/image_loading.js.html +0 -294
package/docs/documentation/image_parsing.js.html +0 -391
package/docs/documentation/image_presets.js.html +0 -207
package/docs/documentation/image_rendering.js.html +0 -845
package/docs/documentation/image_reslice.js.html +0 -164
package/docs/documentation/image_store.js.html +0 -359
package/docs/documentation/image_tools.js.html +0 -792
package/docs/documentation/image_utils.js.html +0 -1609
package/docs/documentation/index.html +0 -175
package/docs/documentation/loaders_commonLoader.js.html +0 -306
package/docs/documentation/loaders_dicomLoader.js.html +0 -130
package/docs/documentation/loaders_fileLoader.js.html +0 -155
package/docs/documentation/loaders_multiframeLoader.js.html +0 -443
package/docs/documentation/loaders_niftiLoader.js.html +0 -150
package/docs/documentation/loaders_nrrdLoader.js.html +0 -545
package/docs/documentation/loaders_resliceLoader.js.html +0 -258
package/docs/documentation/module-imaging_contours.html +0 -954
package/docs/documentation/module-imaging_imageAnonymization.html +0 -544
package/docs/documentation/module-imaging_imageColormaps.html +0 -1012
package/docs/documentation/module-imaging_imageContours.html +0 -954
package/docs/documentation/module-imaging_imageIo.html +0 -1057
package/docs/documentation/module-imaging_imageLayers.html +0 -904
package/docs/documentation/module-imaging_imageLoading.html +0 -1301
package/docs/documentation/module-imaging_imageParsing.html +0 -1356
package/docs/documentation/module-imaging_imagePresets.html +0 -679
package/docs/documentation/module-imaging_imageRendering.html +0 -3223
package/docs/documentation/module-imaging_imageReslice.html +0 -413
package/docs/documentation/module-imaging_imageStore-Larvitar_Store.html +0 -284
package/docs/documentation/module-imaging_imageStore.html +0 -1560
package/docs/documentation/module-imaging_imageTools.html +0 -3617
package/docs/documentation/module-imaging_imageUtils.html +0 -7253
package/docs/documentation/module-imaging_io.html +0 -1057
package/docs/documentation/module-imaging_layers.html +0 -904
package/docs/documentation/module-imaging_loading.html +0 -1301
package/docs/documentation/module-imaging_parsing.html +0 -1375
package/docs/documentation/module-imaging_presets.html +0 -679
package/docs/documentation/module-imaging_rendering.html +0 -8094
package/docs/documentation/module-imaging_reslice.html +0 -411
package/docs/documentation/module-imaging_store-Larvitar_Store.html +0 -284
package/docs/documentation/module-imaging_store.html +0 -1537
package/docs/documentation/module-imaging_strategies_eraseFreehand.html +0 -708
package/docs/documentation/module-imaging_strategies_fillFreehand.html +0 -708
package/docs/documentation/module-imaging_tools.html +0 -3617
package/docs/documentation/module-imaging_tools_custom_contourTool.html +0 -207
package/docs/documentation/module-imaging_tools_custom_diameterTool.html +0 -205
package/docs/documentation/module-imaging_tools_custom_editMaskTool.html +0 -205
package/docs/documentation/module-imaging_tools_custom_polygonScissorsTool.html +0 -203
package/docs/documentation/module-imaging_tools_custom_thresholdBrushTool.html +0 -684
package/docs/documentation/module-imaging_tools_default.html +0 -205
package/docs/documentation/module-imaging_tools_interaction.html +0 -530
package/docs/documentation/module-imaging_tools_io.html +0 -832
package/docs/documentation/module-imaging_tools_main.html +0 -2028
package/docs/documentation/module-imaging_tools_polygonSegmentationMixin.html +0 -567
package/docs/documentation/module-imaging_tools_segmentation.html +0 -3586
package/docs/documentation/module-imaging_tools_state.html +0 -494
package/docs/documentation/module-imaging_utils.html +0 -7253
package/docs/documentation/module-loaders_commonLoader.html +0 -1313
package/docs/documentation/module-loaders_dicomLoader.html +0 -522
package/docs/documentation/module-loaders_fileLoader.html +0 -593
package/docs/documentation/module-loaders_multiframeLoader.html +0 -1169
package/docs/documentation/module-loaders_niftiLoader.html +0 -565
package/docs/documentation/module-loaders_nrrdLoader.html +0 -1459
package/docs/documentation/module-loaders_resliceLoader.html +0 -590
package/docs/documentation/module-monitors_memory.html +0 -980
package/docs/documentation/module-tools_default.html +0 -740
package/docs/documentation/module.exports_module.exports.html +0 -203
package/docs/documentation/monitors_memory.js.html +0 -189
package/docs/documentation/parsers_nrrd.js.html +0 -569
package/docs/documentation/scripts/collapse.js +0 -20
package/docs/documentation/scripts/linenumber.js +0 -25
package/docs/documentation/scripts/nav.js +0 -12
package/docs/documentation/scripts/polyfill.js +0 -4
package/docs/documentation/scripts/prettify/Apache-License-2.0.txt +0 -202
package/docs/documentation/scripts/prettify/lang-css.js +0 -2
package/docs/documentation/scripts/prettify/prettify.js +0 -28
package/docs/documentation/scripts/search.js +0 -83
package/docs/documentation/styles/jsdoc.css +0 -765
package/docs/documentation/styles/prettify.css +0 -80
package/docs/documentation/tools_contourTool.js.html +0 -1963
package/docs/documentation/tools_custom_contourTool.js.html +0 -1968
package/docs/documentation/tools_custom_diameterTool.js.html +0 -225
package/docs/documentation/tools_custom_editMaskTool.js.html +0 -225
package/docs/documentation/tools_custom_polylineScissorsTool.js.html +0 -143
package/docs/documentation/tools_custom_thresholdsBrushTool.js.html +0 -245
package/docs/documentation/tools_default.js.html +0 -576
package/docs/documentation/tools_diameterTool.js.html +0 -219
package/docs/documentation/tools_editMaskTool.js.html +0 -219
package/docs/documentation/tools_interaction.js.html +0 -258
package/docs/documentation/tools_io.js.html +0 -297
package/docs/documentation/tools_main.js.html +0 -443
package/docs/documentation/tools_polygonSegmentationMixin.js.html +0 -329
package/docs/documentation/tools_polylineScissorsTool.js.html +0 -136
package/docs/documentation/tools_seedTool.js.html +0 -423
package/docs/documentation/tools_segmentation.js.html +0 -558
package/docs/documentation/tools_state.js.html +0 -163
package/docs/documentation/tools_strategies_eraseFreehand.js.html +0 -160
package/docs/documentation/tools_strategies_fillFreehand.js.html +0 -163
package/docs/documentation/tools_thresholdsBrushTool.js.html +0 -239
package/docs/documentation/tools_tools.default.js.html +0 -569
package/docs/documentation/tools_tools.interaction.js.html +0 -251
package/docs/documentation/tools_tools.io.js.html +0 -288
package/docs/documentation/tools_tools.main.js.html +0 -442
package/docs/documentation/tools_tools.segmentation.js.html +0 -445
package/docs/documentation/tools_tools.state.js.html +0 -157
package/docs/examples/base.html +0 -170
package/docs/examples/colorMaps.html +0 -181
package/docs/examples/defaultTools.html +0 -246
package/docs/examples/demo/anon1 +0 -0
package/docs/examples/demo/anon10 +0 -0
package/docs/examples/demo/anon11 +0 -0
package/docs/examples/demo/anon12 +0 -0
package/docs/examples/demo/anon13 +0 -0
package/docs/examples/demo/anon14 +0 -0
package/docs/examples/demo/anon15 +0 -0
package/docs/examples/demo/anon16 +0 -0
package/docs/examples/demo/anon17 +0 -0
package/docs/examples/demo/anon18 +0 -0
package/docs/examples/demo/anon19 +0 -0
package/docs/examples/demo/anon2 +0 -0
package/docs/examples/demo/anon20 +0 -0
package/docs/examples/demo/anon21 +0 -0
package/docs/examples/demo/anon22 +0 -0
package/docs/examples/demo/anon23 +0 -0
package/docs/examples/demo/anon24 +0 -0
package/docs/examples/demo/anon3 +0 -0
package/docs/examples/demo/anon4 +0 -0
package/docs/examples/demo/anon5 +0 -0
package/docs/examples/demo/anon6 +0 -0
package/docs/examples/demo/anon7 +0 -0
package/docs/examples/demo/anon8 +0 -0
package/docs/examples/demo/anon9 +0 -0
package/docs/examples/demo/example.nrrd +0 -0
package/docs/examples/demo/segmentation.nrrd +0 -0
package/docs/examples/demo/xa_integris.dcm +0 -0
package/docs/examples/index.html +0 -129
package/docs/examples/larvitar.js +0 -108623
package/docs/examples/layers.html +0 -250
package/docs/examples/masks.html +0 -273
package/docs/examples/multiframe.html +0 -200
package/docs/examples/nrrd.html +0 -96
package/docs/examples/reslice.html +0 -174
package/docs/index.html +0 -92

package/docs/documentation/tools_tools.segmentation.js.html DELETED Viewed

@@ -1,445 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
-<head>
-    <meta charset="utf-8">
-    <title>tools/tools.segmentation.js - Larvitar</title>
-    <meta name="description" content="Dicom Image Toolkit for CornestoneJS" />
-        <meta name="keywords" content="imaging, dataviz, medical, cornerstone" />
-        <meta name="keyword" content="imaging, dataviz, medical, cornerstone" />
-    <script src="scripts/prettify/prettify.js"></script>
-    <script src="scripts/prettify/lang-css.js"></script>
-    <!--[if lt IE 9]>
-      <script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
-    <![endif]-->
-    <link type="text/css" rel="stylesheet" href="styles/prettify.css">
-    <link type="text/css" rel="stylesheet" href="styles/jsdoc.css">
-    <script src="scripts/nav.js" defer></script>
-    <meta name="viewport" content="width=device-width, initial-scale=1.0">
-</head>
-<body>
-<input type="checkbox" id="nav-trigger" class="nav-trigger" />
-<label for="nav-trigger" class="navicon-button x">
-  <div class="navicon"></div>
-</label>
-<label for="nav-trigger" class="overlay"></label>
-<nav >
-    <input type="text" id="nav-search" placeholder="Search" />
-    <h2><a href="index.html">Home</a></h2><h2><a href="https://github.com/dvisionlab/Larvitar" target="_blank" class="menu-item" id="repository" >Github repo</a></h2><h3>Classes</h3><ul><li><a href="module.exports_module.exports.html">module.exports#module.exports</a></li><li><a href="module-imaging_store-Larvitar_Store.html">imaging/store~Larvitar_Store</a></li><li><a href="Tools.Annotation.ContoursTool.html">Tools.Annotation.ContoursTool</a></li><li><a href="Tools.Annotation.DiameterTool.html">Tools.Annotation.DiameterTool</a></li><li><a href="Tools.Brush.BrushTool.html">Tools.Brush.BrushTool</a></li><li><a href="Tools.Brush.ThresholdsBrushTool.html">Tools.Brush.ThresholdsBrushTool</a></li><li><a href="Tools.PolylineScissorsTool.html">Tools.PolylineScissorsTool</a></li></ul><h3>Modules</h3><ul><li><a href="module-imaging_anonymization.html">imaging/anonymization</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_anonymization.html#anonymize#~anonymize">anonymize</a></li><li data-type='method' style='display: none;'><a href="module-imaging_anonymization.html#encrypt#~encrypt">encrypt</a></li></ul></li><li><a href="module-imaging_contours.html">imaging/contours</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#extractSlicePoints#extractSlicePoints">extractSlicePoints</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#populateContoursObject#populateContoursObject">populateContoursObject</a></li><li data-type='method' style='display: none;'><a href="module-imaging_contours.html#parseContours#~parseContours">parseContours</a></li></ul></li><li><a href="module-imaging_io.html">imaging/io</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildData#~buildData">buildData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildDataAsync#~buildDataAsync">buildDataAsync</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#buildHeader#~buildHeader">buildHeader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#getCachedPixelData#~getCachedPixelData">getCachedPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_io.html#importNRRDImage#~importNRRDImage">importNRRDImage</a></li></ul></li><li><a href="module-imaging_layers.html">imaging/layers</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#getActiveLayer#getActiveLayer">getActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#setActiveLayer#setActiveLayer">setActiveLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#updateLayer#updateLayer">updateLayer</a></li><li data-type='method' style='display: none;'><a href="module-imaging_layers.html#buildLayers#~buildLayers">buildLayers</a></li></ul></li><li><a href="module-imaging_loading.html">imaging/loading</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeFileImageLoader#initializeFileImageLoader">initializeFileImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeImageLoader#initializeImageLoader">initializeImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#initializeWebImageLoader#initializeWebImageLoader">initializeWebImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerMultiFrameImageLoader#registerMultiFrameImageLoader">registerMultiFrameImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerNRRDImageLoader#registerNRRDImageLoader">registerNRRDImageLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#registerResliceLoader#registerResliceLoader">registerResliceLoader</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#updateLoadedStack#updateLoadedStack">updateLoadedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_loading.html#isNewInstance#~isNewInstance">isNewInstance</a></li></ul></li><li><a href="module-imaging_parsing.html">imaging/parsing</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#clearImageParsing#clearImageParsing">clearImageParsing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpDataSet#dumpDataSet">dumpDataSet</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFile#readFile">readFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#readFiles#readFiles">readFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpFile#~dumpFile">dumpFile</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#dumpFiles#~dumpFiles">dumpFiles</a></li><li data-type='method' style='display: none;'><a href="module-imaging_parsing.html#parseNextFile#~parseNextFile">parseNextFile</a></li></ul></li><li><a href="module-imaging_presets.html">imaging/presets</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#getImagePresets#getImagePresets">getImagePresets</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImageCustomPreset#setImageCustomPreset">setImageCustomPreset</a></li><li data-type='method' style='display: none;'><a href="module-imaging_presets.html#setImagePreset#setImagePreset">setImagePreset</a></li></ul></li><li><a href="module-imaging_rendering.html">imaging/rendering</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#HSVToRGB#.HSVToRGB">HSVToRGB</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#addColorMap#addColorMap">addColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#applyColorMap#applyColorMap">applyColorMap</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#clearImageCache#clearImageCache">clearImageCache</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#disableViewport#disableViewport">disableViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#fillPixelData#fillPixelData">fillPixelData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#flipImageHorizontal#flipImageHorizontal">flipImageHorizontal</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#flipImageVertical#flipImageVertical">flipImageVertical</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getColormapsList#getColormapsList">getColormapsList</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#getSeriesData#getSeriesData">getSeriesData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#invertImage#invertImage">invertImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#loadAndCacheImages#loadAndCacheImages">loadAndCacheImages</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderImage#renderImage">renderImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#renderWebImage#renderWebImage">renderWebImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resetViewports#resetViewports">resetViewports</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#resizeViewport#resizeViewport">resizeViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#rotateImageLeft#rotateImageLeft">rotateImageLeft</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#rotateImageRight#rotateImageRight">rotateImageRight</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#storeViewportData#storeViewportData">storeViewportData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#unloadViewport#unloadViewport">unloadViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateImage#updateImage">updateImage</a></li><li data-type='method' style='display: none;'><a href="module-imaging_rendering.html#updateViewportData#updateViewportData">updateViewportData</a></li></ul></li><li></li><li><a href="module-imaging_reslice.html">imaging/reslice</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_reslice.html#resliceSeries#resliceSeries">resliceSeries</a></li></ul></li><li><a href="module-imaging_store.html">imaging/store</a><ul class='members'><li data-type='member' style='display: none;'><a href="module-imaging_store.html#.larvitar_store">larvitar_store</a></li></ul><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_store.html#initLarvitarStore#.initLarvitarStore">initLarvitarStore</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#addSeriesIds#~addSeriesIds">addSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#addViewport#~addViewport">addViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#deleteViewport#~deleteViewport">deleteViewport</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#disableVuex#~disableVuex">disableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#enableVuex#~enableVuex">enableVuex</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#get#~get">get</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#removeSeriesIds#~removeSeriesIds">removeSeriesIds</a></li><li data-type='method' style='display: none;'><a href="module-imaging_store.html#set#~set">set</a></li></ul></li><li><a href="module-imaging_tools.html">imaging/tools</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addContoursTool#~addContoursTool">addContoursTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addDefaultTools#~addDefaultTools">addDefaultTools</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addDiameterTool#~addDiameterTool">addDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addMaskEditingTool#~addMaskEditingTool">addMaskEditingTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addSeedsTool#~addSeedsTool">addSeedsTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addStackStateToElement#~addStackStateToElement">addStackStateToElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#addToolStateSingleSlice#~addToolStateSingleSlice">addToolStateSingleSlice</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearCornerstoneElements#~clearCornerstoneElements">clearCornerstoneElements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearMeasurements#~clearMeasurements">clearMeasurements</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#clearToolStateByName#~clearToolStateByName">clearToolStateByName</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#getCurrentMaskData#~getCurrentMaskData">getCurrentMaskData</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#getToolState#~getToolState">getToolState</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#isToolMissing#~isToolMissing">isToolMissing</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setSegmentationConfig#~setSegmentationConfig">setSegmentationConfig</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolActive#~setToolActive">setToolActive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolEnabled#~setToolEnabled">setToolEnabled</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#setToolPassive#~setToolPassive">setToolPassive</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#syncToolStack#~syncToolStack">syncToolStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#updateDiameterTool#~updateDiameterTool">updateDiameterTool</a></li><li data-type='method' style='display: none;'><a href="module-imaging_tools.html#updateStackToolState#~updateStackToolState">updateStackToolState</a></li></ul></li><li><a href="module-imaging_utils.html">imaging/utils</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDate#formatDate">formatDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#formatDateTime#formatDateTime">formatDateTime</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getCmprMetadata#getCmprMetadata">getCmprMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTag#getDICOMTag">getDICOMTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDICOMTagCode#getDICOMTagCode">getDICOMTagCode</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getDistanceBetweenSlices#getDistanceBetweenSlices">getDistanceBetweenSlices</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMaxPixelValue#getMaxPixelValue">getMaxPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMeanValue#getMeanValue">getMeanValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getMinPixelValue#getMinPixelValue">getMinPixelValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getNormalOrientation#getNormalOrientation">getNormalOrientation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelRepresentation#getPixelRepresentation">getPixelRepresentation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getPixelTypedArray#getPixelTypedArray">getPixelTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIOP#getReslicedIOP">getReslicedIOP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedIPP#getReslicedIPP">getReslicedIPP</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedMetadata#getReslicedMetadata">getReslicedMetadata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedPixeldata#getReslicedPixeldata">getReslicedPixeldata</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getReslicedSliceLocation#getReslicedSliceLocation">getReslicedSliceLocation</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedStack#getSortedStack">getSortedStack</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getSortedUIDs#getSortedUIDs">getSortedUIDs</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTagValue#getTagValue">getTagValue</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArray#getTypedArray">getTypedArray</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#getTypedArrayFromDataType#getTypedArrayFromDataType">getTypedArrayFromDataType</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isElement#isElement">isElement</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isNegativeSign#isNegativeSign">isNegativeSign</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isStringVr#isStringVr">isStringVr</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#isValidDate#isValidDate">isValidDate</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseAgeTag#parseAgeTag">parseAgeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTag#parseDateTag">parseDateTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDateTimeTag#parseDateTimeTag">parseDateTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseDICOMFileIDTag#parseDICOMFileIDTag">parseDICOMFileIDTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parsePatientNameTag#parsePatientNameTag">parsePatientNameTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTag#parseTag">parseTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#parseTimeTag#parseTimeTag">parseTimeTag</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteSignedArrays#permuteSignedArrays">permuteSignedArrays</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#permuteValues#permuteValues">permuteValues</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#rand#rand">rand</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#randomId#randomId">randomId</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#sortStackCallback#sortStackCallback">sortStackCallback</a></li><li data-type='method' style='display: none;'><a href="module-imaging_utils.html#spacingArray#spacingArray">spacingArray</a></li></ul></li><li><a href="module-loaders_commonLoader.html">loaders/commonLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getImageFrame#getImageFrame">getImageFrame</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarImageTracker#getLarvitarImageTracker">getLarvitarImageTracker</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getLarvitarManager#getLarvitarManager">getLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#getSeriesDataFromLarvitarManager#getSeriesDataFromLarvitarManager">getSeriesDataFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#populateLarvitarManager#populateLarvitarManager">populateLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#removeSeriesFromLarvitarManager#removeSeriesFromLarvitarManager">removeSeriesFromLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#resetLarvitarManager#resetLarvitarManager">resetLarvitarManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_commonLoader.html#updateLarvitarManager#updateLarvitarManager">updateLarvitarManager</a></li></ul></li><li><a href="module-loaders_dicomLoader.html">loaders/dicomLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#cacheImages#cacheImages">cacheImages</a></li><li data-type='method' style='display: none;'><a href="module-loaders_dicomLoader.html#getDicomImageId#getDicomImageId">getDicomImageId</a></li></ul></li><li><a href="module-loaders_fileLoader.html">loaders/fileLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#getFileImageId#getFileImageId">getFileImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#populateFileManager#populateFileManager">populateFileManager</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileLoader#resetFileLoader">resetFileLoader</a></li><li data-type='method' style='display: none;'><a href="module-loaders_fileLoader.html#resetFileManager#resetFileManager">resetFileManager</a></li></ul></li><li><a href="module-loaders_nrrdLoader.html">loaders/nrrdLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#buildNrrdImage#buildNrrdImage">buildNrrdImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getImageIdFromSlice#getImageIdFromSlice">getImageIdFromSlice</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdImageId#getNrrdImageId">getNrrdImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getNrrdSerieDimensions#getNrrdSerieDimensions">getNrrdSerieDimensions</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#getSliceNumberFromImageId#getSliceNumberFromImageId">getSliceNumberFromImageId</a></li><li data-type='method' style='display: none;'><a href="module-loaders_nrrdLoader.html#loadNrrdImage#loadNrrdImage">loadNrrdImage</a></li></ul></li><li><a href="module-loaders_resliceLoader.html">loaders/resliceLoader</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#createCustomImage#createCustomImage">createCustomImage</a></li><li data-type='method' style='display: none;'><a href="module-loaders_resliceLoader.html#loadReslicedImage#loadReslicedImage">loadReslicedImage</a></li></ul></li><li><a href="module-monitors_memory.html">monitors/memory</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemoryAllocation#checkMemoryAllocation">checkMemoryAllocation</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#checkMemorySupport#checkMemorySupport">checkMemorySupport</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getAvailableMemory#getAvailableMemory">getAvailableMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getMB#getMB">getMB</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#getUsedMemory#getUsedMemory">getUsedMemory</a></li><li data-type='method' style='display: none;'><a href="module-monitors_memory.html#setAvailableMemory#setAvailableMemory">setAvailableMemory</a></li></ul></li><li><a href="module-tools_default.html">tools/default</a><ul class='methods'><li data-type='method' style='display: none;'><a href="module-tools_default.html#getDefaultToolsByType#~getDefaultToolsByType">getDefaultToolsByType</a></li><li data-type='method' style='display: none;'><a href="module-tools_default.html#setDefaultToolsProps#~setDefaultToolsProps">setDefaultToolsProps</a></li></ul></li></ul><h3>Events</h3><ul><li><a href="ContoursTool.html#event:_drawingDoubleTapClickCallback">ContoursTool#_drawingDoubleTapClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDoubleClickCallback">ContoursTool#_drawingMouseDoubleClickCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDownCallback">ContoursTool#_drawingMouseDownCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseDragCallback">ContoursTool#_drawingMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseMoveCallback">ContoursTool#_drawingMouseMoveCallback</a></li><li><a href="ContoursTool.html#event:_drawingMouseUpCallback">ContoursTool#_drawingMouseUpCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchDragCallback">ContoursTool#_drawingTouchDragCallback</a></li><li><a href="ContoursTool.html#event:_drawingTouchStartCallback">ContoursTool#_drawingTouchStartCallback</a></li><li><a href="ContoursTool.html#event:_editMouseDragCallback">ContoursTool#_editMouseDragCallback</a></li><li><a href="ContoursTool.html#event:_editTouchDragCallback">ContoursTool#_editTouchDragCallback</a></li></ul><h3>Mixins</h3><ul><li><a href="Mixins.polygonSegmentationMixin%2520-%2520segmentation%2520operations%2520for%2520polyline.html">Mixins.polygonSegmentationMixin - segmentation operations for polyline</a></li></ul><h3>Global</h3><ul><li><a href="global.html#_checkIfDrawing">_checkIfDrawing</a></li><li><a href="global.html#_paint">_paint</a></li><li><a href="global.html#addDefaultTools">addDefaultTools</a></li><li><a href="global.html#addMouseKeyHandlers">addMouseKeyHandlers</a></li><li><a href="global.html#addSegmentationMask">addSegmentationMask</a></li><li><a href="global.html#addTool">addTool</a></li><li><a href="global.html#buildMultiFrameImage">buildMultiFrameImage</a></li><li><a href="global.html">clearMultiFrameCache</a></li><li><a href="global.html#clearSegmentationState">clearSegmentationState</a></li><li><a href="global.html#config">config</a></li><li><a href="global.html">createCustomImage</a></li><li><a href="global.html#csToolsCreateStack">csToolsCreateStack</a></li><li><a href="global.html#csToolsUpdateImageIndex">csToolsUpdateImageIndex</a></li><li><a href="global.html#deleteMask">deleteMask</a></li><li><a href="global.html#disableBrushTool">disableBrushTool</a></li><li><a href="global.html#download">download</a></li><li><a href="global.html#enableBrushTool">enableBrushTool</a></li><li><a href="global.html#eraseFreehand">eraseFreehand</a></li><li><a href="global.html#eraseInsideFreehand">eraseInsideFreehand</a></li><li><a href="global.html#eraseOutsideFreehand">eraseOutsideFreehand</a></li><li><a href="global.html#exportAnnotations">exportAnnotations</a></li><li><a href="global.html#extractToolInfo">extractToolInfo</a></li><li><a href="global.html#fillFreehand">fillFreehand</a></li><li><a href="global.html#fillInsideFreehand">fillInsideFreehand</a></li><li><a href="global.html#fillOutsideFreehand">fillOutsideFreehand</a></li><li><a href="global.html#forceRender">forceRender</a></li><li><a href="global.html#generateCSV">generateCSV</a></li><li><a href="global.html#generateLUT">generateLUT</a></li><li><a href="global.html#generateUniformLUT">generateUniformLUT</a></li><li><a href="global.html#getActiveLabelmapBuffer">getActiveLabelmapBuffer</a></li><li><a href="global.html#getCircleWithThreshold">getCircleWithThreshold</a></li><li><a href="global.html">getMultiFrameImageId</a></li><li><a href="global.html#HSVtoRGB">HSVtoRGB</a></li><li><a href="global.html#initializeCSTools">initializeCSTools</a></li><li><a href="global.html#initSegmentationModule">initSegmentationModule</a></li><li><a href="global.html#isDrawing">isDrawing</a></li><li><a href="global.html#isToolMissing">isToolMissing</a></li><li><a href="global.html#loadAnnotations">loadAnnotations</a></li><li><a href="global.html#loadMultiFrameImage">loadMultiFrameImage</a></li><li><a href="global.html#NRRD_TYPES_TO_TYPEDARRAY">NRRD_TYPES_TO_TYPEDARRAY</a></li><li><a href="global.html">parse</a></li><li><a href="global.html#redoLastStroke">redoLastStroke</a></li><li><a href="global.html#renderToolData">renderToolData</a></li><li><a href="global.html#restoreToolState">restoreToolState</a></li><li><a href="global.html#saveAnnotations">saveAnnotations</a></li><li><a href="global.html#saveToolState">saveToolState</a></li><li><a href="global.html#setActiveLabelmap">setActiveLabelmap</a></li><li><a href="global.html#setActiveLabelOpacity">setActiveLabelOpacity</a></li><li><a href="global.html#setActiveSegment">setActiveSegment</a></li><li><a href="global.html#setBrushProps">setBrushProps</a></li><li><a href="global.html#setInactiveLabelOpacity">setInactiveLabelOpacity</a></li><li><a href="global.html#setMaskProps">setMaskProps</a></li><li><a href="global.html">setPixelDataType</a></li><li><a href="global.html#setToolActive">setToolActive</a></li><li><a href="global.html#setToolDisabled">setToolDisabled</a></li><li><a href="global.html#setToolEnabled">setToolEnabled</a></li><li><a href="global.html#setToolPassive">setToolPassive</a></li><li><a href="global.html#setToolsStyle">setToolsStyle</a></li><li><a href="global.html#toggleContourMode">toggleContourMode</a></li><li><a href="global.html">toggleMouseHandlers</a></li><li><a href="global.html#tryUpdateImage">tryUpdateImage</a></li><li><a href="global.html#undoLastStroke">undoLastStroke</a></li></ul>
-</nav>
-<div id="main">
-    <h1 class="page-title">tools/tools.segmentation.js</h1>
-    <section>
-        <article>
-            <pre class="prettyprint source linenums"><code>// external libraries
-import cornerstone from "cornerstone-core";
-import cornerstoneTools from "cornerstone-tools/dist/cornerstoneTools.js";
-// tools
-import { setToolActive, setToolDisabled } from "./tools.main";
-// utils
-import { cloneDeep, extend, values } from "lodash";
-const segModule = cornerstoneTools.getModule("segmentation");
-const setters = segModule.setters;
-const getters = segModule.getters;
-/**
- * THIS MODULE IS A WIP
- */
-// DEV
-window.segModule = segModule;
-window.cornerstone = cornerstone;
-window.cornerstoneTools = cornerstoneTools;
-/**
- * NOTES ON CS TOOLS SEGMENTATION MODULE
- * The value in the mask (binary) define which color will be used from the LUT map
- * The different masks are 'labelmap', while different values in the same mask are 'segments'
- * Segments get the color from the lutmap (up to 2^16 segments) and can be shown/hidden one by one
- * > setters.toggleSegmentVisibility(htmlelement,segmentvalue,labelmapid)
- * > setters.colorForSegmentIndexOfColorLUT(colorLutIndex, segmentValue, colorRGBAarray)
- * Labelmaps are linked to a colormap and can be active / inactive
- * */
-// General segmentation cs tools module configuration
-const config = {
-  arrayType: 0,
-  renderOutline: false,
-  renderFill: true,
-  shouldRenderInactiveLabelmaps: true,
-  radius: 10,
-  minRadius: 1,
-  maxRadius: 50,
-  segmentsPerLabelmap: 10,
-  fillAlpha: 0.9,
-  fillAlphaInactive: 0.9,
-  outlineAlpha: 1.0,
-  outlineAlphaInactive: 1.0,
-  outlineWidth: 1,
-  storeHistory: true
-};
-// ====================================================
-// utils to convert from hex to rgb and vice-versa ====
-// ====================================================
-function componentToHex(c) {
-  var hex = c.toString(16);
-  return hex.length == 1 ? "0" + hex : hex;
-}
-export function rgbToHex(c) {
-  let r = componentToHex(c[0]);
-  let g = componentToHex(c[1]);
-  let b = componentToHex(c[2]);
-  return "#" + r + g + b;
-}
-export function hexToRgb(hex) {
-  var result = /^#?([a-f\d]{2})([a-f\d]{2})([a-f\d]{2})$/i.exec(hex);
-  return result
-    ? [
-        parseInt(result[1], 16),
-        parseInt(result[2], 16),
-        parseInt(result[3], 16)
-      ]
-    : null;
-}
-/**
- * Convert color from hsv to rgb
- * @param {Array} color as [h,s,v] 0-1
- * @returns color as [r,g,b] 0-255
- */
-function HSVtoRGB([h, s, v]) {
-  var r, g, b, i, f, p, q, t;
-  i = Math.floor(h * 6);
-  f = h * 6 - i;
-  p = v * (1 - s);
-  q = v * (1 - f * s);
-  t = v * (1 - (1 - f) * s);
-  switch (i % 6) {
-    case 0:
-      (r = v), (g = t), (b = p);
-      break;
-    case 1:
-      (r = q), (g = v), (b = p);
-      break;
-    case 2:
-      (r = p), (g = v), (b = t);
-      break;
-    case 3:
-      (r = p), (g = q), (b = v);
-      break;
-    case 4:
-      (r = t), (g = p), (b = v);
-      break;
-    case 5:
-      (r = v), (g = p), (b = q);
-      break;
-  }
-  return [Math.round(r * 255), Math.round(g * 255), Math.round(b * 255)];
-}
-/**
- * Force cs tools refresh on all enabled images
- */
-export function forceRender() {
-  let enabledElements = cornerstone.getEnabledElements();
-  enabledElements.forEach(enEl => {
-    cornerstone.updateImage(enEl.element);
-  });
-}
-/**
- * Generate the custom LUT - single volume version
- */
-function generateLUT(opacity) {
-  let lut = new Array(segModule.configuration.segmentsPerLabelmap).fill(0);
-  lut = lut.map((e, i) => {
-    return HSVtoRGB([i / lut.length, 1, 1]).concat(Math.round(opacity * 255));
-  });
-  return lut;
-}
-/**
- * Generate the custom LUT - multiple volume version
- * @param {String} hex_color - color for LUT in the #RRGGBB form
- * @param {NUmber} opacity - number between 0 and 1
- */
-function generateUniformLUT(hex_color, opacity) {
-  let lut = new Array(segModule.configuration.segmentsPerLabelmap);
-  let rgb_color = hexToRgb(hex_color);
-  let rgba_color = rgb_color.concat(Math.round(opacity * 255));
-  lut.fill(rgba_color);
-  return lut;
-}
-/**
- * A function to group all settings to load before masks
- * TODO add a param to override config
- */
-export function initSegmentationModule() {
-  // set configuration
-  segModule.configuration = cloneDeep(config);
-}
-/**
- * Add segmentation mask to segmentation module
- * @param {Number} labelId - The label index (must be unique)
- * @param {TypedArray} - The mask data array
- */
-export function addSegmentationMask(props, data, elementId, cb) {
-  let element = document.getElementById(elementId);
-  setters.labelmap3DForElement(element, data.buffer, props.labelId);
-  // if user set a color property, use that color for all segments on the labelmap
-  let lut = props.color
-    ? generateUniformLUT(props.color, props.opacity)
-    : generateLUT(props.opacity);
-  setters.colorLUT(props.labelId, lut);
-  // bind labelmap to colorLUT
-  let labelmap3d = getters.labelmap3D(element, props.labelId);
-  setters.colorLUTIndexForLabelmap3D(labelmap3d, props.labelId);
-  if (cb) {
-    cb();
-  }
-}
-/**
- * Activate a specific labelmap through its labelId
- * @param {Number} labelId - The labelmap id to activate
- * @param {String} elementId - The target html element id
- */
-export function setActiveLabelmap(labelId, elementId) {
-  let element = document.getElementById(elementId);
-  setters.activeLabelmapIndex(element, labelId);
-}
-/**
- * Activate a specific segment through its index
- * @param {Number} segmentIndex - The segment index to activate
- * @param {String} elementId - The target html element id
- */
-export function setActiveSegment(segmentIndex, elementId) {
-  let element = document.getElementById(elementId);
-  setters.activeSegmentIndex(element, segmentIndex);
-}
-/**
- * Change opacity for active label
- * @param {Number} opacity - The desired opacity value
- */
-export function setActiveLabelOpacity(opacity) {
-  segModule.configuration.fillAlpha = opacity;
-  forceRender();
-}
-/**
- * Change opacity for inactive labels
- * @param {Number} opacity - The desired opacity value
- */
-export function setInactiveLabelOpacity(opacity) {
-  segModule.configuration.fillAlphaInactive = opacity;
-  forceRender();
-}
-/**
- * Toggle between 'contours mode' and 'filled mode'
- * @param {Bool} toggle - Contour mode enabled if true
- */
-export function toggleContourMode(toggle) {
-  if (toggle) {
-    segModule.configuration.fillAlpha = 0.0;
-    segModule.configuration.fillAlphaInactive = 0.0;
-    segModule.configuration.outlineAlpha = 1.0;
-    segModule.configuration.outlineAlphaInactive = 1.0;
-    segModule.configuration.outlineWidth = 3;
-  } else {
-    segModule.configuration.fillAlpha = config.fillAlpha;
-    segModule.configuration.fillAlphaInactive = config.fillAlphaInactive;
-    segModule.configuration.outlineAlpha = config.outlineAlpha;
-    segModule.configuration.outlineAlphaInactive = config.outlineAlphaInactive;
-    segModule.configuration.outlineWidth = config.outlineWidth;
-  }
-  forceRender();
-}
-/**
- * Set mask appearance props
- * @param {String} tag - The mask tag
- * @param {Integer} mode - [0=filled, 1=contour, 2=hidden]
- * @param {Float} alpha - Opacity value (if mode=0), between 0 and 1
- */
-export function setMaskProps(props) {
-  // Lut index and segment values are hardcoded because they will depend on design choices:
-  // eg single/multiple volumes for segmentations
-  let lutIndex = props.labelId;
-  let labelIndex = props.labelId;
-  // let segmentValue = MAP_VALUES[props.id];
-  let segmentValue = 1; // binary mask, segment 1 is the only to be affected by color &amp; opacity
-  let currentColor = getters.colorForSegmentIndexColorLUT(
-    props.labelId,
-    segmentValue
-  );
-  let htmlelement = document.getElementById("axial");
-  let newColor = currentColor;
-  switch (props.visualization) {
-    // full
-    case 0:
-      segModule.configuration.renderOutline = true;
-      getters.isSegmentVisible(htmlelement, segmentValue, labelIndex)
-        ? null
-        : setters.toggleSegmentVisibility(
-            htmlelement,
-            segmentValue,
-            labelIndex
-          );
-      newColor[3] = Math.round(props.opacity * 255);
-      setters.colorForSegmentIndexOfColorLUT(lutIndex, segmentValue, newColor);
-      break;
-    // contours
-    case 1:
-      segModule.configuration.renderOutline = true;
-      getters.isSegmentVisible(htmlelement, segmentValue, labelIndex)
-        ? null
-        : setters.toggleSegmentVisibility(
-            htmlelement,
-            segmentValue,
-            labelIndex
-          );
-      newColor[3] = 0;
-      setters.colorForSegmentIndexOfColorLUT(lutIndex, segmentValue, newColor);
-      break;
-    // hidden
-    case 2:
-      setters.toggleSegmentVisibility(htmlelement, segmentValue, labelIndex);
-      break;
-  }
-  forceRender();
-}
-/**
- * Clear state for segmentation module
- */
-export function clearSegmentationState() {
-  segModule.state.series = {};
-}
-/**
- * Enable brushing
- * @param {Number} dimension - The initial brush radius
- */
-export function enableBrushTool(dimension, thresholds) {
-  segModule.configuration.radius = dimension;
-  segModule.configuration.thresholds = thresholds;
-  setToolActive("ThresholdsBrush");
-}
-/**
- * Disable brushing
- * @param {String} toolToActivate - The name of the tool to activate after removing the brush
- */
-export function disableBrushTool(toolToActivate) {
-  setToolDisabled("Brush");
-  setToolActive(toolToActivate);
-}
-/**
- * Change the brush props
- * @param {Object} props - The new brush props {radius: number[px], thresholds: array[min,max]}
- */
-export function setBrushProps(props) {
-  extend(segModule.configuration, props);
-  forceRender();
-}
-/**
- * Retrieve the buffer that represents the current active mask
- */
-export function getActiveLabelmapBuffer() {
-  let element = document.getElementById("axial");
-  let object = segModule.getters.activeLabelmapBuffer(element);
-  return object.buffer;
-}
-/**
- * Undo last brush operation (stroke)
- */
-export function undoLastStroke(elementId) {
-  let element = document.getElementById(elementId);
-  let activeLabelMapIndex = segModule.getters.activeLabelmapIndex(element);
-  setters.undo(element, activeLabelMapIndex);
-}
-/**
- * Redo last brush operation (stroke)
- */
-export function redoLastStroke(elementId) {
-  let element = document.getElementById(elementId);
-  let activeLabelMapIndex = segModule.getters.activeLabelmapIndex(element);
-  setters.redo(element, activeLabelMapIndex);
-}
-/**
- * Delete mask from state
- */
-export function deleteMask(labelId) {
-  let masks = values(segModule.state.series)[0].labelmaps3D;
-  delete masks[labelId];
-  forceRender();
-}
-</code></pre>
-        </article>
-    </section>
-</div>
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