heor-agent-mcp 0.1.0

package/dist/tools/htaDossierPrep.js

@@ -0,0 +1,399 @@
+import { z } from "zod";
+const DossierSchema = z.object({
+    hta_body: z.enum(["nice", "ema", "fda", "iqwig", "has", "jca"]),
+    submission_type: z.enum([
+        "sta",
+        "mta",
+        "early_access",
+        "initial",
+        "renewal",
+        "variation",
+    ]),
+    drug_name: z.string().min(1),
+    indication: z.string().min(1),
+    evidence_summary: z.union([z.string(), z.array(z.any())]).optional(),
+    model_results: z.any().optional(),
+    picos: z
+        .array(z.object({
+        id: z.string(),
+        population: z.string(),
+        comparator: z.string(),
+        outcomes: z.array(z.string()),
+    }))
+        .optional(),
+    output_format: z.enum(["text", "json", "docx"]).optional(),
+    project: z.string().optional(),
+});
+import { createAuditRecord, addAssumption, addWarning, setMethodology, } from "../audit/builder.js";
+import { auditToMarkdown } from "../formatters/markdown.js";
+import { contentToDocx } from "../formatters/docx.js";
+import { saveDossier } from "../knowledge/index.js";
+const NICE_STA_SECTIONS = [
+    "Population",
+    "Intervention",
+    "Comparators",
+    "Outcomes (PICO)",
+    "Clinical Evidence Summary",
+    "Economic Evidence Summary",
+    "Unmet Need",
+    "Place in Therapy",
+];
+const EMA_SECTIONS = [
+    "Product Description",
+    "Clinical Pharmacology",
+    "Efficacy Data",
+    "Safety Data",
+    "Risk-Benefit Assessment",
+];
+const FDA_SECTIONS = [
+    "Indication",
+    "Clinical Studies",
+    "Adverse Reactions",
+    "Dosage and Administration",
+    "Clinical Pharmacology",
+];
+const JCA_SECTIONS = [
+    "Scope Confirmation",
+    "Population and Disease Context",
+    "Intervention",
+    "Comparators",
+    "Outcomes",
+    "Comparative Clinical Effectiveness",
+    "Indirect Treatment Comparison",
+    "Comparative Safety",
+    "Evidence Certainty (GRADE)",
+    "Evidence Gaps and Uncertainty",
+];
+const SECTIONS_BY_BODY = {
+    nice: NICE_STA_SECTIONS,
+    ema: EMA_SECTIONS,
+    fda: FDA_SECTIONS,
+    iqwig: NICE_STA_SECTIONS,
+    has: NICE_STA_SECTIONS,
+    jca: JCA_SECTIONS,
+};
+const METHODOLOGY_BY_BODY = {
+    nice: "NICE STA guidance v3.0 (2022)",
+    ema: "EMA Common Technical Document format",
+    fda: "FDA Prescribing Information format",
+    iqwig: "IQWiG Methods v6.1",
+    has: "HAS transparency committee dossier format",
+    jca: "EUHTA Regulation (EU) 2021/2282 — Joint Clinical Assessment",
+};
+function buildSection(name, drugName, indication, evidenceSummary) {
+    const evidence = typeof evidenceSummary === "string"
+        ? evidenceSummary
+        : Array.isArray(evidenceSummary) && evidenceSummary.length > 0
+            ? evidenceSummary
+                .map((r) => `- ${r.title} (${r.source}, ${r.date})`)
+                .join("\n")
+            : null;
+    switch (name) {
+        case "Population":
+            return {
+                content: `Adult patients with ${indication} requiring pharmacological treatment.`,
+                status: "complete",
+            };
+        case "Intervention":
+            return {
+                content: `${drugName} as described in the Summary of Product Characteristics (SmPC).`,
+                status: "complete",
+            };
+        case "Comparators":
+            return {
+                content: `⚠️ Comparators not specified — provide current standard of care and relevant licensed alternatives for ${indication}.`,
+                status: "missing",
+            };
+        case "Outcomes (PICO)":
+            return {
+                content: `Primary: HbA1c reduction, mortality. Secondary: QoL (EQ-5D), hospitalisation, adverse events.\n⚠️ Confirm outcome selection with clinical advisor.`,
+                status: "partial",
+            };
+        case "Clinical Evidence Summary":
+            return evidence
+                ? { content: evidence, status: "complete" }
+                : {
+                    content: `⚠️ Clinical evidence not provided. Pipe output from literature_search to populate this section.`,
+                    status: "missing",
+                };
+        case "Economic Evidence Summary":
+            return {
+                content: `⚠️ Economic model results not provided. Run cost_effectiveness_model and pipe results here.`,
+                status: "missing",
+            };
+        default:
+            return {
+                content: `⚠️ ${name} — populate with submission-specific content.`,
+                status: "missing",
+            };
+    }
+}
+function buildJCASection(name, drugName, indication, pico, evidenceSummary) {
+    const evidence = typeof evidenceSummary === "string"
+        ? evidenceSummary
+        : Array.isArray(evidenceSummary) && evidenceSummary.length > 0
+            ? evidenceSummary
+                .map((r) => `- ${r.title} (${r.source}, ${r.date})`)
+                .join("\n")
+            : null;
+    switch (name) {
+        case "Scope Confirmation":
+            return {
+                content: `**PICO ${pico.id}** — Scope as confirmed by HTA Coordination Group.\n` +
+                    `Population: ${pico.population}\nIntervention: ${drugName}\nComparator: ${pico.comparator}\n` +
+                    `Outcomes: ${pico.outcomes.join(", ")}`,
+                status: "complete",
+            };
+        case "Population and Disease Context":
+            return {
+                content: `${pico.population} with ${indication}.\n` +
+                    `⚠️ Provide epidemiology, disease burden, and unmet need across relevant EU member states.`,
+                status: "partial",
+            };
+        case "Intervention":
+            return {
+                content: `${drugName} as per EMA-approved Summary of Product Characteristics (SmPC).\n` +
+                    `⚠️ Reference the exact label wording — scope is tied to the approved indication.`,
+                status: "complete",
+            };
+        case "Comparators":
+            return {
+                content: `**Primary comparator:** ${pico.comparator}\n` +
+                    `⚠️ Verify comparator relevance across all 27 EU member states. Include all nationally relevant alternatives identified during scoping.`,
+                status: "partial",
+            };
+        case "Outcomes":
+            return {
+                content: pico.outcomes.length > 0
+                    ? `Assessed outcomes:\n${pico.outcomes.map((o) => `- ${o}`).join("\n")}`
+                    : `⚠️ No outcomes specified for this PICO. Provide primary and secondary endpoints as per scoping decision.`,
+                status: pico.outcomes.length > 0 ? "complete" : "missing",
+            };
+        case "Comparative Clinical Effectiveness":
+            return evidence
+                ? {
+                    content: `Relative effects of ${drugName} vs ${pico.comparator}:\n${evidence}\n` +
+                        `⚠️ Express results as relative risk (RR), hazard ratio (HR), or mean difference (MD) with 95% CI.`,
+                    status: "partial",
+                }
+                : {
+                    content: `⚠️ No clinical evidence provided. Pipe output from literature_search to populate relative effects for ${pico.comparator}.`,
+                    status: "missing",
+                };
+        case "Indirect Treatment Comparison":
+            return {
+                content: `**ITC Feasibility Assessment:**\n` +
+                    `⚠️ Assess whether a connected evidence network exists between ${drugName} and ${pico.comparator}.\n` +
+                    `- If direct head-to-head evidence exists: state this and provide summary.\n` +
+                    `- If only indirect evidence: specify method (MAIC, STC, or NMA) and justify selection.\n` +
+                    `- JCA strongly prefers anchored indirect comparisons. Unanchored MAIC requires explicit justification.\n` +
+                    `- Note any heterogeneity in effect modifiers across included studies.`,
+                status: "missing",
+            };
+        case "Comparative Safety":
+            return {
+                content: `Comparative safety of ${drugName} vs ${pico.comparator}:\n` +
+                    `⚠️ Provide: serious adverse events (SAEs), treatment discontinuations, adverse events of special interest (AESIs).\n` +
+                    `Express as relative risk with 95% CI where possible.`,
+                status: "missing",
+            };
+        case "Evidence Certainty (GRADE)":
+            return {
+                content: `GRADE certainty assessment for ${pico.id}:\n` +
+                    `| Outcome | Certainty | Rationale |\n` +
+                    `|---|---|---|\n` +
+                    pico.outcomes
+                        .map((o) => `| ${o} | ⚠️ TBC | Assess risk of bias, inconsistency, indirectness, imprecision |`)
+                        .join("\n") +
+                    `\n\n⚠️ Complete GRADE table with clinical advisor.`,
+                status: "missing",
+            };
+        case "Evidence Gaps and Uncertainty":
+            return {
+                content: `Known evidence gaps for PICO ${pico.id}:\n` +
+                    `- ⚠️ List data limitations (immature survival data, missing subgroups, short follow-up)\n` +
+                    `- ⚠️ Flag patient populations not represented in trials\n` +
+                    `- ⚠️ Note impact of evidence gaps on certainty of results\n` +
+                    `This section will be referenced by national HTA bodies conducting cost-effectiveness analyses.`,
+                status: "missing",
+            };
+        default:
+            return {
+                content: `⚠️ ${name} — populate with JCA submission-specific content for PICO ${pico.id}.`,
+                status: "missing",
+            };
+    }
+}
+async function handleJCADossier(params, audit) {
+    // Default single PICO if none provided
+    const picos = params.picos && params.picos.length > 0
+        ? params.picos
+        : [
+            {
+                id: "PICO-1",
+                population: `Adults with ${params.indication}`,
+                comparator: "Current standard of care",
+                outcomes: [
+                    "Overall survival",
+                    "Progression-free survival",
+                    "Quality of life (EQ-5D)",
+                    "Adverse events",
+                ],
+            },
+        ];
+    audit = addAssumption(audit, `EUHTA Regulation (EU) 2021/2282 — Joint Clinical Assessment`);
+    audit = addAssumption(audit, `${picos.length} PICO(s) assessed`);
+    audit = addAssumption(audit, `JCA covers comparative clinical effectiveness and safety only. National cost-effectiveness assessment remains at member state level.`);
+    if (picos.length === 1 && (!params.picos || params.picos.length === 0)) {
+        audit = addWarning(audit, `No PICOs provided — generated default PICO. Provide picos[] array for accurate JCA structure reflecting actual scoping decisions.`);
+    }
+    if (picos.length > 10) {
+        audit = addWarning(audit, `${picos.length} PICOs — complex submission. Ensure each PICO has dedicated evidence package.`);
+    }
+    const lines = [];
+    lines.push(`## EU Joint Clinical Assessment (JCA) Dossier Draft`);
+    lines.push(`**Drug:** ${params.drug_name} | **Indication:** ${params.indication}`);
+    lines.push(`**Regulation:** EUHTA (EU) 2021/2282 | **PICOs:** ${picos.length}`);
+    lines.push(`**Submission type:** ${params.submission_type.toUpperCase()}`);
+    lines.push(`\n> ⚠️ JCA covers comparative clinical effectiveness and safety **only**. Economic evaluation (cost-effectiveness) remains at national level.\n`);
+    const allGaps = [];
+    for (const pico of picos) {
+        lines.push(`---\n## ${pico.id}: ${pico.population} vs ${pico.comparator}`);
+        for (const sectionName of JCA_SECTIONS) {
+            const { content, status } = buildJCASection(sectionName, params.drug_name, params.indication, pico, params.evidence_summary);
+            lines.push(`### ${sectionName}`);
+            lines.push(content);
+            lines.push("");
+            if (status === "missing") {
+                const gap = `[${pico.id}] ${sectionName}`;
+                allGaps.push(gap);
+                audit = addWarning(audit, `Section "${sectionName}" (${pico.id}) requires additional input`);
+            }
+        }
+    }
+    if (allGaps.length > 0) {
+        lines.push(`---\n## Gap Analysis (${allGaps.length} sections require input)`);
+        allGaps.forEach((g) => lines.push(`- ⚠️ ${g}`));
+        lines.push("");
+    }
+    lines.push(auditToMarkdown(audit));
+    const outputFormat = params.output_format ?? "text";
+    const jcaTextContent = lines.join("\n");
+    if (params.project) {
+        try {
+            await saveDossier(params.project, params.hta_body, params.submission_type, { drug_name: params.drug_name, indication: params.indication }, jcaTextContent);
+        }
+        catch { }
+    }
+    if (outputFormat === "docx") {
+        const base64 = await contentToDocx(`JCA ${params.submission_type.toUpperCase()} Dossier`, jcaTextContent, audit);
+        return {
+            content: `[DOCX Report Generated]\n\nBase64-encoded DOCX (${Math.round(base64.length / 1024)}KB):\n${base64}`,
+            audit,
+        };
+    }
+    return { content: jcaTextContent, audit };
+}
+export async function handleHtaDossierPrep(rawParams) {
+    const params = DossierSchema.parse(rawParams);
+    const outputFormat = params.output_format ?? "text";
+    let audit = createAuditRecord("hta_dossier_prep", params, outputFormat);
+    const methodology = METHODOLOGY_BY_BODY[params.hta_body] ?? "Unknown HTA body";
+    audit = setMethodology(audit, methodology);
+    audit = addAssumption(audit, `Template: ${methodology}`);
+    audit = addAssumption(audit, `Submission type: ${params.submission_type.toUpperCase()}`);
+    // JCA: generate per-PICO sections
+    if (params.hta_body === "jca") {
+        return handleJCADossier(params, audit);
+    }
+    const sections = SECTIONS_BY_BODY[params.hta_body] ?? NICE_STA_SECTIONS;
+    const lines = [];
+    lines.push(`## ${params.hta_body.toUpperCase()} ${params.submission_type.toUpperCase()} Dossier Draft`);
+    lines.push(`**Drug:** ${params.drug_name} | **Indication:** ${params.indication}`);
+    lines.push(`**Template:** ${methodology}\n`);
+    const gaps = [];
+    for (const sectionName of sections) {
+        const { content, status } = buildSection(sectionName, params.drug_name, params.indication, params.evidence_summary);
+        lines.push(`### ${sectionName}`);
+        lines.push(content);
+        lines.push("");
+        if (status === "missing") {
+            gaps.push(sectionName);
+            audit = addWarning(audit, `Section "${sectionName}" requires additional input`);
+        }
+    }
+    if (gaps.length > 0) {
+        lines.push(`---`);
+        lines.push(`## Gap Analysis`);
+        lines.push(`The following ${gaps.length} section(s) require additional information:`);
+        gaps.forEach((g) => lines.push(`- ⚠️ ${g}`));
+        lines.push("");
+    }
+    lines.push(auditToMarkdown(audit));
+    const dossierTextContent = lines.join("\n");
+    if (params.project) {
+        try {
+            await saveDossier(params.project, params.hta_body, params.submission_type, { drug_name: params.drug_name, indication: params.indication }, dossierTextContent);
+        }
+        catch { }
+    }
+    if (outputFormat === "docx") {
+        const base64 = await contentToDocx(`${params.hta_body.toUpperCase()} ${params.submission_type.toUpperCase()} Dossier`, dossierTextContent, audit);
+        return {
+            content: `[DOCX Report Generated]\n\nBase64-encoded DOCX (${Math.round(base64.length / 1024)}KB):\n${base64}`,
+            audit,
+        };
+    }
+    return { content: dossierTextContent, audit };
+}
+export const htaDossierPrepToolSchema = {
+    name: "hta_dossier_prep",
+    description: "Structure evidence into HTA body-specific submission format (NICE STA, EMA, FDA, IQWiG, HAS, EU JCA). Produces draft sections with gap analysis. Accepts output from literature_search and cost_effectiveness_model.",
+    inputSchema: {
+        type: "object",
+        properties: {
+            hta_body: {
+                type: "string",
+                enum: ["nice", "ema", "fda", "iqwig", "has", "jca"],
+                description: "HTA body. Use 'jca' for EU Joint Clinical Assessment (EUHTA Reg. 2021/2282).",
+            },
+            submission_type: {
+                type: "string",
+                enum: ["sta", "mta", "early_access", "initial", "renewal", "variation"],
+                description: "Submission type. Use 'initial'/'renewal'/'variation' for JCA.",
+            },
+            drug_name: { type: "string" },
+            indication: { type: "string" },
+            evidence_summary: {
+                description: "Text summary or JSON array from literature_search output",
+            },
+            model_results: {
+                description: "JSON output from cost_effectiveness_model",
+            },
+            picos: {
+                type: "array",
+                description: "JCA: list of PICOs from the scoping decision. If omitted, a default PICO is generated.",
+                items: {
+                    type: "object",
+                    properties: {
+                        id: {
+                            type: "string",
+                            description: "PICO identifier, e.g. 'PICO-1'",
+                        },
+                        population: { type: "string" },
+                        comparator: { type: "string" },
+                        outcomes: { type: "array", items: { type: "string" } },
+                    },
+                    required: ["id", "population", "comparator", "outcomes"],
+                },
+            },
+            output_format: { type: "string", enum: ["text", "json", "docx"] },
+            project: {
+                type: "string",
+                description: "Project ID for knowledge base persistence. When set, dossier draft is saved to ~/.heor-agent/projects/{project}/raw/dossiers/",
+            },
+        },
+        required: ["hta_body", "submission_type", "drug_name", "indication"],
+    },
+};
+//# sourceMappingURL=htaDossierPrep.js.map

package/dist/tools/htaDossierPrep.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"htaDossierPrep.js","sourceRoot":"","sources":["../../src/tools/htaDossierPrep.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAQxB,MAAM,aAAa,GAAG,CAAC,CAAC,MAAM,CAAC;IAC7B,QAAQ,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC;IAC/D,eAAe,EAAE,CAAC,CAAC,IAAI,CAAC;QACtB,KAAK;QACL,KAAK;QACL,cAAc;QACd,SAAS;QACT,SAAS;QACT,WAAW;KACZ,CAAC;IACF,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC5B,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC7B,gBAAgB,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,EAAE;IACpE,aAAa,EAAE,CAAC,CAAC,GAAG,EAAE,CAAC,QAAQ,EAAE;IACjC,KAAK,EAAE,CAAC;SACL,KAAK,CACJ,CAAC,CAAC,MAAM,CAAC;QACP,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE;QACd,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE;QACtB,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE;QACtB,QAAQ,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;KAC9B,CAAC,CACH;SACA,QAAQ,EAAE;IACb,aAAa,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC,QAAQ,EAAE;IAC1D,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;CAC/B,CAAC,CAAC;AACH,OAAO,EACL,iBAAiB,EACjB,aAAa,EACb,UAAU,EACV,cAAc,GACf,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AACtD,OAAO,EAAE,WAAW,EAAE,MAAM,uBAAuB,CAAC;AAEpD,MAAM,iBAAiB,GAAG;IACxB,YAAY;IACZ,cAAc;IACd,aAAa;IACb,iBAAiB;IACjB,2BAA2B;IAC3B,2BAA2B;IAC3B,YAAY;IACZ,kBAAkB;CACnB,CAAC;AAEF,MAAM,YAAY,GAAG;IACnB,qBAAqB;IACrB,uBAAuB;IACvB,eAAe;IACf,aAAa;IACb,yBAAyB;CAC1B,CAAC;AAEF,MAAM,YAAY,GAAG;IACnB,YAAY;IACZ,kBAAkB;IAClB,mBAAmB;IACnB,2BAA2B;IAC3B,uBAAuB;CACxB,CAAC;AAEF,MAAM,YAAY,GAAG;IACnB,oBAAoB;IACpB,gCAAgC;IAChC,cAAc;IACd,aAAa;IACb,UAAU;IACV,oCAAoC;IACpC,+BAA+B;IAC/B,oBAAoB;IACpB,4BAA4B;IAC5B,+BAA+B;CAChC,CAAC;AAEF,MAAM,gBAAgB,GAA6B;IACjD,IAAI,EAAE,iBAAiB;IACvB,GAAG,EAAE,YAAY;IACjB,GAAG,EAAE,YAAY;IACjB,KAAK,EAAE,iBAAiB;IACxB,GAAG,EAAE,iBAAiB;IACtB,GAAG,EAAE,YAAY;CAClB,CAAC;AAEF,MAAM,mBAAmB,GAA2B;IAClD,IAAI,EAAE,+BAA+B;IACrC,GAAG,EAAE,sCAAsC;IAC3C,GAAG,EAAE,oCAAoC;IACzC,KAAK,EAAE,oBAAoB;IAC3B,GAAG,EAAE,2CAA2C;IAChD,GAAG,EAAE,6DAA6D;CACnE,CAAC;AAEF,SAAS,YAAY,CACnB,IAAY,EACZ,QAAgB,EAChB,UAAkB,EAClB,eAA6C;IAE7C,MAAM,QAAQ,GACZ,OAAO,eAAe,KAAK,QAAQ;QACjC,CAAC,CAAC,eAAe;QACjB,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,IAAI,eAAe,CAAC,MAAM,GAAG,CAAC;YAC5D,CAAC,CAAC,eAAe;iBACZ,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC,IAAI,GAAG,CAAC;iBACnD,IAAI,CAAC,IAAI,CAAC;YACf,CAAC,CAAC,IAAI,CAAC;IAEb,QAAQ,IAAI,EAAE,CAAC;QACb,KAAK,YAAY;YACf,OAAO;gBACL,OAAO,EAAE,uBAAuB,UAAU,uCAAuC;gBACjF,MAAM,EAAE,UAAU;aACnB,CAAC;QACJ,KAAK,cAAc;YACjB,OAAO;gBACL,OAAO,EAAE,GAAG,QAAQ,iEAAiE;gBACrF,MAAM,EAAE,UAAU;aACnB,CAAC;QACJ,KAAK,aAAa;YAChB,OAAO;gBACL,OAAO,EAAE,0GAA0G,UAAU,GAAG;gBAChI,MAAM,EAAE,SAAS;aAClB,CAAC;QACJ,KAAK,iBAAiB;YACpB,OAAO;gBACL,OAAO,EAAE,oJAAoJ;gBAC7J,MAAM,EAAE,SAAS;aAClB,CAAC;QACJ,KAAK,2BAA2B;YAC9B,OAAO,QAAQ;gBACb,CAAC,CAAC,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,UAAU,EAAE;gBAC3C,CAAC,CAAC;oBACE,OAAO,EAAE,iGAAiG;oBAC1G,MAAM,EAAE,SAAS;iBAClB,CAAC;QACR,KAAK,2BAA2B;YAC9B,OAAO;gBACL,OAAO,EAAE,6FAA6F;gBACtG,MAAM,EAAE,SAAS;aAClB,CAAC;QACJ;YACE,OAAO;gBACL,OAAO,EAAE,MAAM,IAAI,+CAA+C;gBAClE,MAAM,EAAE,SAAS;aAClB,CAAC;IACN,CAAC;AACH,CAAC;AAED,SAAS,eAAe,CACtB,IAAY,EACZ,QAAgB,EAChB,UAAkB,EAClB,IAAoB,EACpB,eAA6C;IAE7C,MAAM,QAAQ,GACZ,OAAO,eAAe,KAAK,QAAQ;QACjC,CAAC,CAAC,eAAe;QACjB,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,IAAI,eAAe,CAAC,MAAM,GAAG,CAAC;YAC5D,CAAC,CAAC,eAAe;iBACZ,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC,IAAI,GAAG,CAAC;iBACnD,IAAI,CAAC,IAAI,CAAC;YACf,CAAC,CAAC,IAAI,CAAC;IAEb,QAAQ,IAAI,EAAE,CAAC;QACb,KAAK,oBAAoB;YACvB,OAAO;gBACL,OAAO,EACL,UAAU,IAAI,CAAC,EAAE,sDAAsD;oBACvE,eAAe,IAAI,CAAC,UAAU,mBAAmB,QAAQ,iBAAiB,IAAI,CAAC,UAAU,IAAI;oBAC7F,aAAa,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE;gBACzC,MAAM,EAAE,UAAU;aACnB,CAAC;QACJ,KAAK,gCAAgC;YACnC,OAAO;gBACL,OAAO,EACL,GAAG,IAAI,CAAC,UAAU,SAAS,UAAU,KAAK;oBAC1C,2FAA2F;gBAC7F,MAAM,EAAE,SAAS;aAClB,CAAC;QACJ,KAAK,cAAc;YACjB,OAAO;gBACL,OAAO,EACL,GAAG,QAAQ,mEAAmE;oBAC9E,kFAAkF;gBACpF,MAAM,EAAE,UAAU;aACnB,CAAC;QACJ,KAAK,aAAa;YAChB,OAAO;gBACL,OAAO,EACL,2BAA2B,IAAI,CAAC,UAAU,IAAI;oBAC9C,wIAAwI;gBAC1I,MAAM,EAAE,SAAS;aAClB,CAAC;QACJ,KAAK,UAAU;YACb,OAAO;gBACL,OAAO,EACL,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC;oBACtB,CAAC,CAAC,uBAAuB,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE;oBACxE,CAAC,CAAC,0GAA0G;gBAChH,MAAM,EAAE,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS;aAC1D,CAAC;QACJ,KAAK,oCAAoC;YACvC,OAAO,QAAQ;gBACb,CAAC,CAAC;oBACE,OAAO,EACL,uBAAuB,QAAQ,OAAO,IAAI,CAAC,UAAU,MAAM,QAAQ,IAAI;wBACvE,mGAAmG;oBACrG,MAAM,EAAE,SAAS;iBAClB;gBACH,CAAC,CAAC;oBACE,OAAO,EAAE,yGAAyG,IAAI,CAAC,UAAU,GAAG;oBACpI,MAAM,EAAE,SAAS;iBAClB,CAAC;QACR,KAAK,+BAA+B;YAClC,OAAO;gBACL,OAAO,EACL,mCAAmC;oBACnC,iEAAiE,QAAQ,QAAQ,IAAI,CAAC,UAAU,KAAK;oBACrG,6EAA6E;oBAC7E,0FAA0F;oBAC1F,0GAA0G;oBAC1G,uEAAuE;gBACzE,MAAM,EAAE,SAAS;aAClB,CAAC;QACJ,KAAK,oBAAoB;YACvB,OAAO;gBACL,OAAO,EACL,yBAAyB,QAAQ,OAAO,IAAI,CAAC,UAAU,KAAK;oBAC5D,sHAAsH;oBACtH,sDAAsD;gBACxD,MAAM,EAAE,SAAS;aAClB,CAAC;QACJ,KAAK,4BAA4B;YAC/B,OAAO;gBACL,OAAO,EACL,kCAAkC,IAAI,CAAC,EAAE,KAAK;oBAC9C,uCAAuC;oBACvC,iBAAiB;oBACjB,IAAI,CAAC,QAAQ;yBACV,GAAG,CACF,CAAC,CAAC,EAAE,EAAE,CACJ,KAAK,CAAC,6EAA6E,CACtF;yBACA,IAAI,CAAC,IAAI,CAAC;oBACb,oDAAoD;gBACtD,MAAM,EAAE,SAAS;aAClB,CAAC;QACJ,KAAK,+BAA+B;YAClC,OAAO;gBACL,OAAO,EACL,gCAAgC,IAAI,CAAC,EAAE,KAAK;oBAC5C,2FAA2F;oBAC3F,2DAA2D;oBAC3D,6DAA6D;oBAC7D,gGAAgG;gBAClG,MAAM,EAAE,SAAS;aAClB,CAAC;QACJ;YACE,OAAO;gBACL,OAAO,EAAE,MAAM,IAAI,6DAA6D,IAAI,CAAC,EAAE,GAAG;gBAC1F,MAAM,EAAE,SAAS;aAClB,CAAC;IACN,CAAC;AACH,CAAC;AAED,KAAK,UAAU,gBAAgB,CAC7B,MAAqB,EACrB,KAA2C;IAE3C,uCAAuC;IACvC,MAAM,KAAK,GACT,MAAM,CAAC,KAAK,IAAI,MAAM,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC;QACrC,CAAC,CAAC,MAAM,CAAC,KAAK;QACd,CAAC,CAAC;YACE;gBACE,EAAE,EAAE,QAAQ;gBACZ,UAAU,EAAE,eAAe,MAAM,CAAC,UAAU,EAAE;gBAC9C,UAAU,EAAE,0BAA0B;gBACtC,QAAQ,EAAE;oBACR,kBAAkB;oBAClB,2BAA2B;oBAC3B,yBAAyB;oBACzB,gBAAgB;iBACjB;aACF;SACF,CAAC;IAER,KAAK,GAAG,aAAa,CACnB,KAAK,EACL,6DAA6D,CAC9D,CAAC;IACF,KAAK,GAAG,aAAa,CAAC,KAAK,EAAE,GAAG,KAAK,CAAC,MAAM,mBAAmB,CAAC,CAAC;IACjE,KAAK,GAAG,aAAa,CACnB,KAAK,EACL,sIAAsI,CACvI,CAAC;IACF,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,KAAK,IAAI,MAAM,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC,CAAC,EAAE,CAAC;QACvE,KAAK,GAAG,UAAU,CAChB,KAAK,EACL,mIAAmI,CACpI,CAAC;IACJ,CAAC;IACD,IAAI,KAAK,CAAC,MAAM,GAAG,EAAE,EAAE,CAAC;QACtB,KAAK,GAAG,UAAU,CAChB,KAAK,EACL,GAAG,KAAK,CAAC,MAAM,+EAA+E,CAC/F,CAAC;IACJ,CAAC;IAED,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,CAAC,IAAI,CAAC,qDAAqD,CAAC,CAAC;IAClE,KAAK,CAAC,IAAI,CACR,aAAa,MAAM,CAAC,SAAS,sBAAsB,MAAM,CAAC,UAAU,EAAE,CACvE,CAAC;IACF,KAAK,CAAC,IAAI,CACR,qDAAqD,KAAK,CAAC,MAAM,EAAE,CACpE,CAAC;IACF,KAAK,CAAC,IAAI,CAAC,wBAAwB,MAAM,CAAC,eAAe,CAAC,WAAW,EAAE,EAAE,CAAC,CAAC;IAC3E,KAAK,CAAC,IAAI,CACR,iJAAiJ,CAClJ,CAAC;IAEF,MAAM,OAAO,GAAa,EAAE,CAAC;IAE7B,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,KAAK,CAAC,IAAI,CAAC,WAAW,IAAI,CAAC,EAAE,KAAK,IAAI,CAAC,UAAU,OAAO,IAAI,CAAC,UAAU,EAAE,CAAC,CAAC;QAC3E,KAAK,MAAM,WAAW,IAAI,YAAY,EAAE,CAAC;YACvC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,eAAe,CACzC,WAAW,EACX,MAAM,CAAC,SAAS,EAChB,MAAM,CAAC,UAAU,EACjB,IAAI,EACJ,MAAM,CAAC,gBAAgB,CACxB,CAAC;YACF,KAAK,CAAC,IAAI,CAAC,OAAO,WAAW,EAAE,CAAC,CAAC;YACjC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YACpB,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YACf,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;gBACzB,MAAM,GAAG,GAAG,IAAI,IAAI,CAAC,EAAE,KAAK,WAAW,EAAE,CAAC;gBAC1C,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;gBAClB,KAAK,GAAG,UAAU,CAChB,KAAK,EACL,YAAY,WAAW,MAAM,IAAI,CAAC,EAAE,6BAA6B,CAClE,CAAC;YACJ,CAAC;QACH,CAAC;IACH,CAAC;IAED,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CACR,yBAAyB,OAAO,CAAC,MAAM,0BAA0B,CAClE,CAAC;QACF,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;QAChD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjB,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC;IAEnC,MAAM,YAAY,GAAG,MAAM,CAAC,aAAa,IAAI,MAAM,CAAC;IACpD,MAAM,cAAc,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAExC,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;QACnB,IAAI,CAAC;YACH,MAAM,WAAW,CACf,MAAM,CAAC,OAAO,EACd,MAAM,CAAC,QAAQ,EACf,MAAM,CAAC,eAAe,EACtB,EAAE,SAAS,EAAE,MAAM,CAAC,SAAS,EAAE,UAAU,EAAE,MAAM,CAAC,UAAU,EAAE,EAC9D,cAAc,CACf,CAAC;QACJ,CAAC;QAAC,MAAM,CAAC,CAAA,CAAC;IACZ,CAAC;IAED,IAAI,YAAY,KAAK,MAAM,EAAE,CAAC;QAC5B,MAAM,MAAM,GAAG,MAAM,aAAa,CAChC,OAAO,MAAM,CAAC,eAAe,CAAC,WAAW,EAAE,UAAU,EACrD,cAAc,EACd,KAAK,CACN,CAAC;QACF,OAAO;YACL,OAAO,EAAE,mDAAmD,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,MAAM,GAAG,IAAI,CAAC,SAAS,MAAM,EAAE;YAC7G,KAAK;SACN,CAAC;IACJ,CAAC;IAED,OAAO,EAAE,OAAO,EAAE,cAAc,EAAE,KAAK,EAAE,CAAC;AAC5C,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,oBAAoB,CACxC,SAAkB;IAElB,MAAM,MAAM,GAAG,aAAa,CAAC,KAAK,CAAC,SAAS,CAAkB,CAAC;IAC/D,MAAM,YAAY,GAAG,MAAM,CAAC,aAAa,IAAI,MAAM,CAAC;IACpD,IAAI,KAAK,GAAG,iBAAiB,CAC3B,kBAAkB,EAClB,MAA4C,EAC5C,YAAY,CACb,CAAC;IACF,MAAM,WAAW,GACf,mBAAmB,CAAC,MAAM,CAAC,QAAQ,CAAC,IAAI,kBAAkB,CAAC;IAC7D,KAAK,GAAG,cAAc,CAAC,KAAK,EAAE,WAAW,CAAC,CAAC;IAC3C,KAAK,GAAG,aAAa,CAAC,KAAK,EAAE,aAAa,WAAW,EAAE,CAAC,CAAC;IACzD,KAAK,GAAG,aAAa,CACnB,KAAK,EACL,oBAAoB,MAAM,CAAC,eAAe,CAAC,WAAW,EAAE,EAAE,CAC3D,CAAC;IAEF,kCAAkC;IAClC,IAAI,MAAM,CAAC,QAAQ,KAAK,KAAK,EAAE,CAAC;QAC9B,OAAO,gBAAgB,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;IACzC,CAAC;IAED,MAAM,QAAQ,GAAG,gBAAgB,CAAC,MAAM,CAAC,QAAQ,CAAC,IAAI,iBAAiB,CAAC;IACxE,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,KAAK,CAAC,IAAI,CACR,MAAM,MAAM,CAAC,QAAQ,CAAC,WAAW,EAAE,IAAI,MAAM,CAAC,eAAe,CAAC,WAAW,EAAE,gBAAgB,CAC5F,CAAC;IACF,KAAK,CAAC,IAAI,CACR,aAAa,MAAM,CAAC,SAAS,sBAAsB,MAAM,CAAC,UAAU,EAAE,CACvE,CAAC;IACF,KAAK,CAAC,IAAI,CAAC,iBAAiB,WAAW,IAAI,CAAC,CAAC;IAE7C,MAAM,IAAI,GAAa,EAAE,CAAC;IAC1B,KAAK,MAAM,WAAW,IAAI,QAAQ,EAAE,CAAC;QACnC,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,YAAY,CACtC,WAAW,EACX,MAAM,CAAC,SAAS,EAChB,MAAM,CAAC,UAAU,EACjB,MAAM,CAAC,gBAAgB,CACxB,CAAC;QACF,KAAK,CAAC,IAAI,CAAC,OAAO,WAAW,EAAE,CAAC,CAAC;QACjC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QACpB,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACf,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;YACzB,IAAI,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;YACvB,KAAK,GAAG,UAAU,CAChB,KAAK,EACL,YAAY,WAAW,6BAA6B,CACrD,CAAC;QACJ,CAAC;IACH,CAAC;IAED,IAAI,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACpB,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAClB,KAAK,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC;QAC9B,KAAK,CAAC,IAAI,CACR,iBAAiB,IAAI,CAAC,MAAM,6CAA6C,CAC1E,CAAC;QACF,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;QAC7C,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACjB,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC;IAEnC,MAAM,kBAAkB,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAE5C,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;QACnB,IAAI,CAAC;YACH,MAAM,WAAW,CACf,MAAM,CAAC,OAAO,EACd,MAAM,CAAC,QAAQ,EACf,MAAM,CAAC,eAAe,EACtB,EAAE,SAAS,EAAE,MAAM,CAAC,SAAS,EAAE,UAAU,EAAE,MAAM,CAAC,UAAU,EAAE,EAC9D,kBAAkB,CACnB,CAAC;QACJ,CAAC;QAAC,MAAM,CAAC,CAAA,CAAC;IACZ,CAAC;IAED,IAAI,YAAY,KAAK,MAAM,EAAE,CAAC;QAC5B,MAAM,MAAM,GAAG,MAAM,aAAa,CAChC,GAAG,MAAM,CAAC,QAAQ,CAAC,WAAW,EAAE,IAAI,MAAM,CAAC,eAAe,CAAC,WAAW,EAAE,UAAU,EAClF,kBAAkB,EAClB,KAAK,CACN,CAAC;QACF,OAAO;YACL,OAAO,EAAE,mDAAmD,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,MAAM,GAAG,IAAI,CAAC,SAAS,MAAM,EAAE;YAC7G,KAAK;SACN,CAAC;IACJ,CAAC;IAED,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,KAAK,EAAE,CAAC;AAChD,CAAC;AAED,MAAM,CAAC,MAAM,wBAAwB,GAAG;IACtC,IAAI,EAAE,kBAAkB;IACxB,WAAW,EACT,sNAAsN;IACxN,WAAW,EAAE;QACX,IAAI,EAAE,QAAQ;QACd,UAAU,EAAE;YACV,QAAQ,EAAE;gBACR,IAAI,EAAE,QAAQ;gBACd,IAAI,EAAE,CAAC,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC;gBACnD,WAAW,EACT,8EAA8E;aACjF;YACD,eAAe,EAAE;gBACf,IAAI,EAAE,QAAQ;gBACd,IAAI,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,cAAc,EAAE,SAAS,EAAE,SAAS,EAAE,WAAW,CAAC;gBACvE,WAAW,EACT,+DAA+D;aAClE;YACD,SAAS,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE;YAC7B,UAAU,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE;YAC9B,gBAAgB,EAAE;gBAChB,WAAW,EAAE,0DAA0D;aACxE;YACD,aAAa,EAAE;gBACb,WAAW,EAAE,2CAA2C;aACzD;YACD,KAAK,EAAE;gBACL,IAAI,EAAE,OAAO;gBACb,WAAW,EACT,wFAAwF;gBAC1F,KAAK,EAAE;oBACL,IAAI,EAAE,QAAQ;oBACd,UAAU,EAAE;wBACV,EAAE,EAAE;4BACF,IAAI,EAAE,QAAQ;4BACd,WAAW,EAAE,gCAAgC;yBAC9C;wBACD,UAAU,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE;wBAC9B,UAAU,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE;wBAC9B,QAAQ,EAAE,EAAE,IAAI,EAAE,OAAO,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,EAAE;qBACvD;oBACD,QAAQ,EAAE,CAAC,IAAI,EAAE,YAAY,EAAE,YAAY,EAAE,UAAU,CAAC;iBACzD;aACF;YACD,aAAa,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE;YACjE,OAAO,EAAE;gBACP,IAAI,EAAE,QAAQ;gBACd,WAAW,EACT,+HAA+H;aAClI;SACF;QACD,QAAQ,EAAE,CAAC,UAAU,EAAE,iBAAiB,EAAE,WAAW,EAAE,YAAY,CAAC;KACrE;CACF,CAAC"}

package/dist/tools/knowledgeRead.d.ts

@@ -0,0 +1,21 @@
+import type { ToolResult } from "../providers/types.js";
+export declare function handleKnowledgeRead(rawParams: unknown): Promise<ToolResult>;
+export declare const knowledgeReadToolSchema: {
+    name: string;
+    description: string;
+    inputSchema: {
+        type: string;
+        properties: {
+            project: {
+                type: string;
+                description: string;
+            };
+            path: {
+                type: string;
+                description: string;
+            };
+        };
+        required: string[];
+    };
+};
+//# sourceMappingURL=knowledgeRead.d.ts.map

package/dist/tools/knowledgeRead.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"knowledgeRead.d.ts","sourceRoot":"","sources":["../../src/tools/knowledgeRead.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AAQxD,wBAAsB,mBAAmB,CAAC,SAAS,EAAE,OAAO,GAAG,OAAO,CAAC,UAAU,CAAC,CAiBjF;AAED,eAAO,MAAM,uBAAuB;;;;;;;;;;;;;;;;;CAWnC,CAAC"}

package/dist/tools/knowledgeRead.js

@@ -0,0 +1,38 @@
+import { z } from "zod";
+import { readKnowledgeFile } from "../knowledge/wikiStore.js";
+import { createAuditRecord } from "../audit/builder.js";
+const KnowledgeReadSchema = z.object({
+    project: z.string().min(1),
+    path: z.string().min(1),
+});
+export async function handleKnowledgeRead(rawParams) {
+    const params = KnowledgeReadSchema.parse(rawParams);
+    const audit = createAuditRecord("knowledge_read", params, "text");
+    try {
+        const content = await readKnowledgeFile(params.project, params.path);
+        return {
+            content: `## ${params.path}\n\n${content}`,
+            audit,
+        };
+    }
+    catch (err) {
+        const msg = err instanceof Error ? err.message : String(err);
+        return {
+            content: `Error reading ${params.path}: ${msg}`,
+            audit,
+        };
+    }
+}
+export const knowledgeReadToolSchema = {
+    name: "knowledge_read",
+    description: "Read a file from a project's raw/ or wiki/ tree. Path is relative to project root. Only raw/ and wiki/ subtrees accessible.",
+    inputSchema: {
+        type: "object",
+        properties: {
+            project: { type: "string", description: "Project ID" },
+            path: { type: "string", description: "Relative path (e.g. 'wiki/trials/sustain-6.md' or 'raw/literature/pubmed_12345.md')" },
+        },
+        required: ["project", "path"],
+    },
+};
+//# sourceMappingURL=knowledgeRead.js.map

package/dist/tools/knowledgeRead.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"knowledgeRead.js","sourceRoot":"","sources":["../../src/tools/knowledgeRead.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,iBAAiB,EAAE,MAAM,2BAA2B,CAAC;AAE9D,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AAExD,MAAM,mBAAmB,GAAG,CAAC,CAAC,MAAM,CAAC;IACnC,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC1B,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;CACxB,CAAC,CAAC;AAEH,MAAM,CAAC,KAAK,UAAU,mBAAmB,CAAC,SAAkB;IAC1D,MAAM,MAAM,GAAG,mBAAmB,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;IACpD,MAAM,KAAK,GAAG,iBAAiB,CAAC,gBAAgB,EAAE,MAA4C,EAAE,MAAM,CAAC,CAAC;IAExG,IAAI,CAAC;QACH,MAAM,OAAO,GAAG,MAAM,iBAAiB,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC;QACrE,OAAO;YACL,OAAO,EAAE,MAAM,MAAM,CAAC,IAAI,OAAO,OAAO,EAAE;YAC1C,KAAK;SACN,CAAC;IACJ,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QAC7D,OAAO;YACL,OAAO,EAAE,iBAAiB,MAAM,CAAC,IAAI,KAAK,GAAG,EAAE;YAC/C,KAAK;SACN,CAAC;IACJ,CAAC;AACH,CAAC;AAED,MAAM,CAAC,MAAM,uBAAuB,GAAG;IACrC,IAAI,EAAE,gBAAgB;IACtB,WAAW,EAAE,6HAA6H;IAC1I,WAAW,EAAE;QACX,IAAI,EAAE,QAAQ;QACd,UAAU,EAAE;YACV,OAAO,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,YAAY,EAAE;YACtD,IAAI,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,qFAAqF,EAAE;SAC7H;QACD,QAAQ,EAAE,CAAC,SAAS,EAAE,MAAM,CAAC;KAC9B;CACF,CAAC"}

package/dist/tools/knowledgeSearch.d.ts

@@ -0,0 +1,37 @@
+import type { ToolResult } from "../providers/types.js";
+export declare function handleKnowledgeSearch(rawParams: unknown): Promise<ToolResult>;
+export declare const knowledgeSearchToolSchema: {
+    name: string;
+    description: string;
+    inputSchema: {
+        type: string;
+        properties: {
+            project: {
+                type: string;
+                description: string;
+            };
+            query: {
+                type: string;
+                description: string;
+            };
+            paths: {
+                type: string;
+                items: {
+                    type: string;
+                    enum: string[];
+                };
+                description: string;
+            };
+            max_results: {
+                type: string;
+                description: string;
+            };
+            case_sensitive: {
+                type: string;
+                description: string;
+            };
+        };
+        required: string[];
+    };
+};
+//# sourceMappingURL=knowledgeSearch.d.ts.map

package/dist/tools/knowledgeSearch.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"knowledgeSearch.d.ts","sourceRoot":"","sources":["../../src/tools/knowledgeSearch.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AAWxD,wBAAsB,qBAAqB,CAAC,SAAS,EAAE,OAAO,GAAG,OAAO,CAAC,UAAU,CAAC,CA0BnF;AAED,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAcrC,CAAC"}

package/dist/tools/knowledgeSearch.js

@@ -0,0 +1,51 @@
+import { z } from "zod";
+import { searchProject } from "../knowledge/search.js";
+import { createAuditRecord } from "../audit/builder.js";
+const KnowledgeSearchSchema = z.object({
+    project: z.string().min(1),
+    query: z.string().min(1),
+    paths: z.array(z.enum(["raw", "wiki"])).optional(),
+    max_results: z.number().int().min(1).max(100).optional(),
+    case_sensitive: z.boolean().optional(),
+});
+export async function handleKnowledgeSearch(rawParams) {
+    const params = KnowledgeSearchSchema.parse(rawParams);
+    const audit = createAuditRecord("knowledge_search", params, "text");
+    const matches = await searchProject(params.project, params.query, {
+        paths: params.paths,
+        max_results: params.max_results,
+        case_sensitive: params.case_sensitive,
+    });
+    const lines = [];
+    lines.push(`## Knowledge Search: "${params.query}"`);
+    lines.push(`Project: ${params.project} | Matches: ${matches.length}\n`);
+    if (matches.length === 0) {
+        lines.push("No matches found. Try broader search terms or check that the project has been populated (run literature_search with `project` param first).");
+    }
+    else {
+        for (const m of matches) {
+            lines.push(`### ${m.file}${m.title ? ` — ${m.title}` : ""}`);
+            if (m.source)
+                lines.push(`*Source: ${m.source}*`);
+            lines.push(`Line ${m.line_number}: \`${m.snippet}\``);
+            lines.push("");
+        }
+    }
+    return { content: lines.join("\n"), audit };
+}
+export const knowledgeSearchToolSchema = {
+    name: "knowledge_search",
+    description: "Search a project's knowledge base (raw/ and wiki/) for text matches. Returns file paths with line numbers and snippets. Use this to find previously-retrieved literature, model runs, and compiled wiki content without re-querying external APIs.",
+    inputSchema: {
+        type: "object",
+        properties: {
+            project: { type: "string", description: "Project ID (must exist)" },
+            query: { type: "string", description: "Search query — multi-term searches match ANY term (OR)" },
+            paths: { type: "array", items: { type: "string", enum: ["raw", "wiki"] }, description: "Which subtrees to search. Default: both." },
+            max_results: { type: "number", description: "Max matches to return (default 20, max 100)" },
+            case_sensitive: { type: "boolean", description: "Case-sensitive search (default false)" },
+        },
+        required: ["project", "query"],
+    },
+};
+//# sourceMappingURL=knowledgeSearch.js.map

package/dist/tools/knowledgeSearch.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"knowledgeSearch.js","sourceRoot":"","sources":["../../src/tools/knowledgeSearch.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,aAAa,EAAE,MAAM,wBAAwB,CAAC;AAEvD,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AAExD,MAAM,qBAAqB,GAAG,CAAC,CAAC,MAAM,CAAC;IACrC,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC1B,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IACxB,KAAK,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,QAAQ,EAAE;IAClD,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE;IACxD,cAAc,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,EAAE;CACvC,CAAC,CAAC;AAEH,MAAM,CAAC,KAAK,UAAU,qBAAqB,CAAC,SAAkB;IAC5D,MAAM,MAAM,GAAG,qBAAqB,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;IACtD,MAAM,KAAK,GAAG,iBAAiB,CAAC,kBAAkB,EAAE,MAA4C,EAAE,MAAM,CAAC,CAAC;IAE1G,MAAM,OAAO,GAAG,MAAM,aAAa,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,KAAK,EAAE;QAChE,KAAK,EAAE,MAAM,CAAC,KAAK;QACnB,WAAW,EAAE,MAAM,CAAC,WAAW;QAC/B,cAAc,EAAE,MAAM,CAAC,cAAc;KACtC,CAAC,CAAC;IAEH,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,CAAC,IAAI,CAAC,yBAAyB,MAAM,CAAC,KAAK,GAAG,CAAC,CAAC;IACrD,KAAK,CAAC,IAAI,CAAC,YAAY,MAAM,CAAC,OAAO,eAAe,OAAO,CAAC,MAAM,IAAI,CAAC,CAAC;IAExE,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzB,KAAK,CAAC,IAAI,CAAC,6IAA6I,CAAC,CAAC;IAC5J,CAAC;SAAM,CAAC;QACN,KAAK,MAAM,CAAC,IAAI,OAAO,EAAE,CAAC;YACxB,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YAC7D,IAAI,CAAC,CAAC,MAAM;gBAAE,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC;YAClD,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,WAAW,OAAO,CAAC,CAAC,OAAO,IAAI,CAAC,CAAC;YACtD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACjB,CAAC;IACH,CAAC;IAED,OAAO,EAAE,OAAO,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,KAAK,EAAE,CAAC;AAC9C,CAAC;AAED,MAAM,CAAC,MAAM,yBAAyB,GAAG;IACvC,IAAI,EAAE,kBAAkB;IACxB,WAAW,EAAE,oPAAoP;IACjQ,WAAW,EAAE;QACX,IAAI,EAAE,QAAQ;QACd,UAAU,EAAE;YACV,OAAO,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,yBAAyB,EAAE;YACnE,KAAK,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,wDAAwD,EAAE;YAChG,KAAK,EAAE,EAAE,IAAI,EAAE,OAAO,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC,EAAE,EAAE,WAAW,EAAE,0CAA0C,EAAE;YACnI,WAAW,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,EAAE,6CAA6C,EAAE;YAC3F,cAAc,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,WAAW,EAAE,uCAAuC,EAAE;SAC1F;QACD,QAAQ,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC;KAC/B;CACF,CAAC"}

package/dist/tools/knowledgeWrite.d.ts

@@ -0,0 +1,25 @@
+import type { ToolResult } from "../providers/types.js";
+export declare function handleKnowledgeWrite(rawParams: unknown): Promise<ToolResult>;
+export declare const knowledgeWriteToolSchema: {
+    name: string;
+    description: string;
+    inputSchema: {
+        type: string;
+        properties: {
+            project: {
+                type: string;
+                description: string;
+            };
+            path: {
+                type: string;
+                description: string;
+            };
+            content: {
+                type: string;
+                description: string;
+            };
+        };
+        required: string[];
+    };
+};
+//# sourceMappingURL=knowledgeWrite.d.ts.map

package/dist/tools/knowledgeWrite.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"knowledgeWrite.d.ts","sourceRoot":"","sources":["../../src/tools/knowledgeWrite.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AASxD,wBAAsB,oBAAoB,CAAC,SAAS,EAAE,OAAO,GAAG,OAAO,CAAC,UAAU,CAAC,CAiBlF;AAED,eAAO,MAAM,wBAAwB;;;;;;;;;;;;;;;;;;;;;CAYpC,CAAC"}