heor-agent-mcp 0.1.0

package/LICENSE

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+MIT License
+
+Copyright (c) 2026 mnaumov
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/README.md

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+# HEORAgent MCP Server
+
+An AI-powered Health Economics and Outcomes Research (HEOR) agent for Claude.ai — automates literature review, cost-effectiveness modelling, and HTA dossier preparation.
+
+## Quick Start
+
+Add to your Claude.ai MCP configuration:
+
+```json
+{
+  "mcpServers": {
+    "heor-agent": {
+      "command": "npx",
+      "args": ["heor-agent-mcp"]
+    }
+  }
+}
+```
+
+Or run locally:
+
+```bash
+npm install heor-agent-mcp
+npx heor-agent-mcp
+```
+
+## Tools
+
+### literature_search
+
+Search PubMed, ClinicalTrials.gov, bioRxiv/medRxiv, and ChEMBL simultaneously.
+Returns structured results with a full PRISMA-style audit trail.
+
+**Required**: `query` (string)  
+**Optional**: `sources` (array), `max_results` (1–100), `date_from` (YYYY-MM-DD), `output_format` (text|json|docx)
+
+**Example prompt**: "Find RCT evidence on semaglutide for type 2 diabetes from the last 3 years"
+
+### cost_effectiveness_model
+
+State-of-the-art cost-utility analysis: multi-state Markov model, probabilistic sensitivity
+analysis (PSA, Monte Carlo), one-way sensitivity analysis (tornado diagram), cost-effectiveness
+acceptability curve (CEAC), and Expected Value of Perfect Information (EVPI).
+
+Follows ISPOR good practice guidelines and NICE reference case (3.5% discount rate).
+
+**Required**: `intervention`, `comparator`, `indication`, `time_horizon`, `perspective`, `clinical_inputs`, `cost_inputs`  
+**Optional**: `model_type` (markov|partsa|decision_tree), `utility_inputs`, `run_psa`, `psa_iterations`, `run_owsa`
+
+**Supported HTA perspectives**:
+- `nhs` — NICE threshold £20–30K/QALY
+- `us_payer` — ICER threshold $100–150K/QALY
+- `societal` — Societal perspective $50–100K/QALY
+
+For oncology: set `model_type="partsa"` to use Partitioned Survival Analysis (NICE TSD 14).
+
+**Example prompt**: "Model cost-effectiveness of semaglutide vs sitagliptin for T2D, NHS perspective, lifetime horizon"
+
+### hta_dossier_prep
+
+Structure evidence into submission-ready HTA dossier sections with gap analysis.
+Accepts output from `literature_search` and `cost_effectiveness_model` directly.
+
+**Required**: `hta_body` (nice|ema|fda|iqwig|has), `submission_type` (sta|mta|early_access), `drug_name`, `indication`  
+**Optional**: `evidence_summary` (text or JSON from literature_search), `model_results` (from cost_effectiveness_model)
+
+**Supported bodies**: NICE (UK), EMA (EU), FDA (US), IQWiG (Germany), HAS (France)
+
+**Example prompt**: "Prepare a NICE STA outline for semaglutide in type 2 diabetes using [literature search output]"
+
+## Audit Trail
+
+Every tool call returns a full audit record:
+- Sources queried, queries sent, response counts
+- Inclusion/exclusion counts with reasons
+- Methodology notes and assumptions
+- Warnings and data quality flags
+
+Suitable for inclusion in HTA submission appendices.
+
+## Data Sources (Phase 1 — DirectProvider)
+
+Currently integrated (free, direct API access):
+- **PubMed** — 35M+ biomedical citations (NCBI E-utilities)
+- **ClinicalTrials.gov** — FDA-regulated clinical studies (CT.gov v2 API)
+- **bioRxiv / medRxiv** — Life sciences and medical preprints
+- **ChEMBL** — Drug bioactivity, mechanisms, ADMET (EMBL-EBI)
+
+## Data Sources (Roadmap)
+
+### Phase 2 — Open/Free APIs
+- WHO Global Health Observatory — Global epidemiology and health indicators
+- World Bank Data — Demographics, macroeconomics
+- OECD Health Data — Costs, utilization, health statistics (OECD)
+- IHME / Global Burden of Disease — Global disease burden estimates
+- ISPOR Presentations Database — HEOR studies and conference posters
+
+### Phase 2 — HTA Guidance & Pricing (Open)
+- NICE (UK): Methods Guide, Technology Appraisals, PSSRU Unit Costs, NHS Reference Costs, BNF
+- ICER (US): Value Assessment Framework, CMS Data
+- CADTH (Canada): Guidelines and Reviews, INESSS
+- PBAC (Australia): Guidelines, PSD, PBS/MBS Schedule
+- HAS (France): Guidelines, Transparency Committee, CEPS
+- IQWiG/G-BA (Germany): Methods Guide, Appraisal Decisions
+- AIFA (Italy), AEMPS/IPT (Spain), TLV (Sweden), MHLW (Japan)
+- CONITEC/ANVISA (Brazil), IETS (Colombia), FONASA (Chile), HITAP (Thailand)
+- HIRA/NHIS (South Korea), WHO GHO, OECD Health, World Bank
+
+### Phase 2 — Restricted (with credentials)
+- CPRD (UK primary care), NHS HES (UK hospital episodes), SNDS (France national claims)
+- German SHI/AOK/WIdO, Nordic Registries, Japan NDB, NHIRD (Taiwan)
+- NHSO (Thailand), PhilHealth (Philippines)
+
+### Phase 3 — Commercial (enterprise tier)
+- IQVIA MIDAS/RWD, Optum Clinformatics, Flatiron Health (oncology EHR)
+- Premier Healthcare Database, Komodo Health, Oracle Health RWD
+- IBM Micromedex Red Book (drug pricing), SSR Health (net pricing/rebates)
+
+## Local RWE Datasets (Phase 2)
+
+Point to local files in `/Users/mnaumov/Projects/Health_Statistics`:
+- NAMCS — National Ambulatory Medical Care Survey (US)
+- NHAMCS — National Hospital Ambulatory Medical Care Survey (US)
+- MEPS — Medical Expenditure Panel Survey (US)
+- DATASUS — Brazilian health system data (hospital + epidemiology)
+
+## Tiers
+
+- **DirectProvider** (default) — Free. Uses your Anthropic API key. All tools, text + JSON output.
+- **HostedProvider** — Set `HEOR_API_KEY` env var. Phase 2: DOCX/PDF reports, Redis caching.
+
+## Configuration
+
+```bash
+HEOR_API_KEY   # Set to enable HostedProvider (Phase 2). Omit for DirectProvider (Phase 1).
+```
+
+## Development
+
+```bash
+npm install
+npm test          # 74 tests
+npm run build     # Compiles to dist/
+npm run dev       # Run with tsx (no build step)
+```
+
+Node.js >= 20 required.
+
+## Disclaimer
+
+All outputs are preliminary and for research orientation only. Results require validation by a
+qualified health economist before use in any HTA submission, payer negotiation, or clinical decision.

package/dist/audit/builder.d.ts

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+import type { AuditRecord, SourceAudit, ExclusionRecord } from "./types.js";
+export declare function createAuditRecord(tool: string, query: Record<string, unknown>, output_format: string, methodology?: string): AuditRecord;
+export declare function addSource(record: AuditRecord, source: SourceAudit): AuditRecord;
+export declare function addExclusion(record: AuditRecord, exclusion: ExclusionRecord): AuditRecord;
+export declare function addAssumption(record: AuditRecord, assumption: string): AuditRecord;
+export declare function addWarning(record: AuditRecord, warning: string): AuditRecord;
+export declare function setMethodology(record: AuditRecord, methodology: string): AuditRecord;
+//# sourceMappingURL=builder.d.ts.map

package/dist/audit/builder.d.ts.map

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package/dist/audit/builder.js

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+export function createAuditRecord(tool, query, output_format, methodology = "") {
+    return {
+        tool,
+        timestamp: new Date().toISOString(),
+        query,
+        sources_queried: [],
+        methodology,
+        inclusions: 0,
+        exclusions: [],
+        assumptions: [],
+        warnings: [],
+        output_format,
+    };
+}
+export function addSource(record, source) {
+    return {
+        ...record,
+        sources_queried: [...record.sources_queried, source],
+        inclusions: record.inclusions + source.results_included,
+    };
+}
+export function addExclusion(record, exclusion) {
+    return {
+        ...record,
+        exclusions: [...record.exclusions, exclusion],
+    };
+}
+export function addAssumption(record, assumption) {
+    return { ...record, assumptions: [...record.assumptions, assumption] };
+}
+export function addWarning(record, warning) {
+    return { ...record, warnings: [...record.warnings, warning] };
+}
+export function setMethodology(record, methodology) {
+    return { ...record, methodology };
+}
+//# sourceMappingURL=builder.js.map

package/dist/audit/builder.js.map

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package/dist/audit/types.d.ts

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+export interface SourceAudit {
+    source: string;
+    query_sent: string;
+    results_returned: number;
+    results_included: number;
+    latency_ms: number;
+    status: "ok" | "partial" | "failed";
+    error?: string;
+}
+export interface ExclusionRecord {
+    id: string;
+    title: string;
+    reason: string;
+}
+export interface AuditRecord {
+    tool: string;
+    /** ISO 8601 timestamp when the tool invocation began (query start time, not completion time) */
+    timestamp: string;
+    query: Record<string, unknown>;
+    sources_queried: SourceAudit[];
+    methodology: string;
+    /** Running total of results included across all sources — incremented by addSource() */
+    inclusions: number;
+    /** Individual exclusion records with reasons — use .length for count. Exclusions track WHY items were dropped; inclusions are just counted since the results array IS the included set */
+    exclusions: ExclusionRecord[];
+    assumptions: string[];
+    warnings: string[];
+    output_format: string;
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/audit/types.d.ts.map

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package/dist/audit/types.js

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+export {};
+//# sourceMappingURL=types.js.map

package/dist/audit/types.js.map

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+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/audit/types.ts"],"names":[],"mappings":""}

package/dist/formatters/docx.d.ts

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+import type { LiteratureResult } from "../providers/types.js";
+import type { AuditRecord } from "../audit/types.js";
+export declare function resultsToDocx(results: LiteratureResult[], audit: AuditRecord): Promise<string>;
+export declare function contentToDocx(title: string, markdownContent: string, audit: AuditRecord): Promise<string>;
+//# sourceMappingURL=docx.d.ts.map

package/dist/formatters/docx.d.ts.map

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package/dist/formatters/docx.js

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+import { Document, Paragraph, TextRun, HeadingLevel, Table, TableRow, TableCell, WidthType, AlignmentType, Packer, } from "docx";
+export async function resultsToDocx(results, audit) {
+    const doc = new Document({
+        sections: [{
+                properties: {},
+                children: [
+                    // Title
+                    new Paragraph({
+                        children: [new TextRun({ text: "Literature Search Report", bold: true, size: 48 })],
+                        heading: HeadingLevel.TITLE,
+                        alignment: AlignmentType.CENTER,
+                        spacing: { after: 400 },
+                    }),
+                    // Metadata
+                    new Paragraph({
+                        children: [new TextRun({ text: `Generated: ${audit.timestamp} | Tool: ${audit.tool}`, italics: true, size: 20, color: "666666" })],
+                        alignment: AlignmentType.CENTER,
+                        spacing: { after: 600 },
+                    }),
+                    // Methodology
+                    new Paragraph({
+                        children: [new TextRun({ text: "Methodology", bold: true, size: 28 })],
+                        heading: HeadingLevel.HEADING_1,
+                    }),
+                    new Paragraph({
+                        children: [new TextRun({ text: audit.methodology || "Not specified", size: 22 })],
+                        spacing: { after: 200 },
+                    }),
+                    // Summary stats
+                    new Paragraph({
+                        children: [new TextRun({ text: "Summary", bold: true, size: 28 })],
+                        heading: HeadingLevel.HEADING_1,
+                    }),
+                    new Paragraph({
+                        children: [new TextRun({ text: `Total results included: ${audit.inclusions}`, size: 22 })],
+                    }),
+                    new Paragraph({
+                        children: [new TextRun({ text: `Sources queried: ${audit.sources_queried.length}`, size: 22 })],
+                        spacing: { after: 300 },
+                    }),
+                    // Results heading
+                    new Paragraph({
+                        children: [new TextRun({ text: "Results", bold: true, size: 28 })],
+                        heading: HeadingLevel.HEADING_1,
+                    }),
+                    // Each result
+                    ...results.flatMap((r, i) => [
+                        new Paragraph({
+                            children: [new TextRun({ text: `${i + 1}. ${r.title}`, bold: true, size: 24 })],
+                            heading: HeadingLevel.HEADING_2,
+                        }),
+                        new Paragraph({
+                            children: [
+                                new TextRun({ text: `Source: `, bold: true, size: 20 }),
+                                new TextRun({ text: `${r.source} | `, size: 20 }),
+                                new TextRun({ text: `Date: `, bold: true, size: 20 }),
+                                new TextRun({ text: `${r.date} | `, size: 20 }),
+                                new TextRun({ text: `Type: `, bold: true, size: 20 }),
+                                new TextRun({ text: r.study_type, size: 20 }),
+                            ],
+                        }),
+                        ...(r.authors.length > 0 ? [new Paragraph({
+                                children: [
+                                    new TextRun({ text: "Authors: ", bold: true, size: 20 }),
+                                    new TextRun({ text: r.authors.join(", "), size: 20 }),
+                                ],
+                            })] : []),
+                        ...(r.abstract ? [new Paragraph({
+                                children: [new TextRun({ text: r.abstract.slice(0, 500), size: 20 })],
+                                spacing: { before: 100 },
+                            })] : []),
+                        new Paragraph({
+                            children: [new TextRun({ text: r.url, size: 18, color: "0563C1" })],
+                            spacing: { after: 200 },
+                        }),
+                    ]),
+                    // Audit section
+                    new Paragraph({
+                        children: [new TextRun({ text: "Audit Trail", bold: true, size: 28 })],
+                        heading: HeadingLevel.HEADING_1,
+                        spacing: { before: 400 },
+                    }),
+                    // Sources table
+                    buildSourcesTable(audit),
+                    // Assumptions
+                    ...(audit.assumptions.length > 0 ? [
+                        new Paragraph({
+                            children: [new TextRun({ text: "Assumptions", bold: true, size: 24 })],
+                            heading: HeadingLevel.HEADING_2,
+                        }),
+                        ...audit.assumptions.map(a => new Paragraph({
+                            children: [new TextRun({ text: `• ${a}`, size: 20 })],
+                        })),
+                    ] : []),
+                    // Warnings
+                    ...(audit.warnings.length > 0 ? [
+                        new Paragraph({
+                            children: [new TextRun({ text: "Warnings", bold: true, size: 24 })],
+                            heading: HeadingLevel.HEADING_2,
+                        }),
+                        ...audit.warnings.map(w => new Paragraph({
+                            children: [new TextRun({ text: `Warning: ${w}`, size: 20, color: "CC6600" })],
+                        })),
+                    ] : []),
+                    // Disclaimer
+                    new Paragraph({
+                        children: [new TextRun({
+                                text: "Disclaimer: This is a preliminary report for orientation purposes only. Results require validation by a qualified health economist before use in any HTA submission or payer negotiation.",
+                                italics: true, size: 18, color: "999999",
+                            })],
+                        spacing: { before: 600 },
+                    }),
+                ],
+            }],
+    });
+    const buffer = await Packer.toBuffer(doc);
+    return buffer.toString("base64");
+}
+function buildSourcesTable(audit) {
+    const headerRow = new TableRow({
+        children: ["Source", "Query", "Returned", "Included", "Status"].map(text => new TableCell({
+            children: [new Paragraph({ children: [new TextRun({ text, bold: true, size: 20 })] })],
+            width: { size: 20, type: WidthType.PERCENTAGE },
+        })),
+        tableHeader: true,
+    });
+    const dataRows = audit.sources_queried.map(s => new TableRow({
+        children: [s.source, s.query_sent, String(s.results_returned), String(s.results_included), s.status].map(text => new TableCell({
+            children: [new Paragraph({ children: [new TextRun({ text, size: 20 })] })],
+            width: { size: 20, type: WidthType.PERCENTAGE },
+        })),
+    }));
+    return new Table({
+        rows: [headerRow, ...dataRows],
+        width: { size: 100, type: WidthType.PERCENTAGE },
+    });
+}
+// Generic content-to-docx for CE model and dossier outputs
+export async function contentToDocx(title, markdownContent, audit) {
+    // Parse markdown sections into document paragraphs
+    const contentParagraphs = markdownContent.split("\n").map(line => {
+        if (line.startsWith("## ")) {
+            return new Paragraph({
+                children: [new TextRun({ text: line.replace(/^## /, ""), bold: true, size: 28 })],
+                heading: HeadingLevel.HEADING_1,
+                spacing: { before: 300 },
+            });
+        }
+        if (line.startsWith("### ")) {
+            return new Paragraph({
+                children: [new TextRun({ text: line.replace(/^### /, ""), bold: true, size: 24 })],
+                heading: HeadingLevel.HEADING_2,
+            });
+        }
+        if (line.startsWith("**") && line.endsWith("**")) {
+            return new Paragraph({
+                children: [new TextRun({ text: line.replace(/\*\*/g, ""), bold: true, size: 22 })],
+            });
+        }
+        if (line.startsWith("- ")) {
+            return new Paragraph({
+                children: [new TextRun({ text: line.replace(/^- /, "• "), size: 20 })],
+            });
+        }
+        if (line.startsWith("| ")) {
+            // Table rows — render as plain text (tables handled separately)
+            return new Paragraph({
+                children: [new TextRun({ text: line, size: 18, font: "Courier New" })],
+            });
+        }
+        if (line.trim() === "" || line.startsWith("---")) {
+            return new Paragraph({ children: [] });
+        }
+        return new Paragraph({
+            children: [new TextRun({ text: line.replace(/\*\*/g, ""), size: 22 })],
+        });
+    });
+    const doc = new Document({
+        sections: [{
+                properties: {},
+                children: [
+                    new Paragraph({
+                        children: [new TextRun({ text: title, bold: true, size: 48 })],
+                        heading: HeadingLevel.TITLE,
+                        alignment: AlignmentType.CENTER,
+                        spacing: { after: 400 },
+                    }),
+                    new Paragraph({
+                        children: [new TextRun({ text: `Generated: ${audit.timestamp}`, italics: true, size: 20, color: "666666" })],
+                        alignment: AlignmentType.CENTER,
+                        spacing: { after: 600 },
+                    }),
+                    ...contentParagraphs,
+                    new Paragraph({
+                        children: [new TextRun({
+                                text: "Disclaimer: This is a preliminary report for orientation purposes only.",
+                                italics: true, size: 18, color: "999999",
+                            })],
+                        spacing: { before: 600 },
+                    }),
+                ],
+            }],
+    });
+    const buffer = await Packer.toBuffer(doc);
+    return buffer.toString("base64");
+}
+//# sourceMappingURL=docx.js.map

package/dist/formatters/docx.js.map

@@ -0,0 +1 @@
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package/dist/formatters/json.d.ts

@@ -0,0 +1,4 @@
+import type { LiteratureResult } from "../providers/types.js";
+import type { AuditRecord } from "../audit/types.js";
+export declare function resultsToJson(results: LiteratureResult[], audit: AuditRecord): object;
+//# sourceMappingURL=json.d.ts.map

package/dist/formatters/json.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"json.d.ts","sourceRoot":"","sources":["../../src/formatters/json.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAC9D,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAErD,wBAAgB,aAAa,CAAC,OAAO,EAAE,gBAAgB,EAAE,EAAE,KAAK,EAAE,WAAW,GAAG,MAAM,CAErF"}

package/dist/formatters/json.js

@@ -0,0 +1,4 @@
+export function resultsToJson(results, audit) {
+    return { results, audit, total: results.length };
+}
+//# sourceMappingURL=json.js.map

package/dist/formatters/json.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"json.js","sourceRoot":"","sources":["../../src/formatters/json.ts"],"names":[],"mappings":"AAGA,MAAM,UAAU,aAAa,CAAC,OAA2B,EAAE,KAAkB;IAC3E,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC;AACnD,CAAC"}

package/dist/formatters/markdown.d.ts

@@ -0,0 +1,5 @@
+import type { LiteratureResult } from "../providers/types.js";
+import type { AuditRecord } from "../audit/types.js";
+export declare function resultsToMarkdown(results: LiteratureResult[], audit: AuditRecord): string;
+export declare function auditToMarkdown(audit: AuditRecord): string;
+//# sourceMappingURL=markdown.d.ts.map

package/dist/formatters/markdown.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"markdown.d.ts","sourceRoot":"","sources":["../../src/formatters/markdown.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAC9D,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAErD,wBAAgB,iBAAiB,CAC/B,OAAO,EAAE,gBAAgB,EAAE,EAC3B,KAAK,EAAE,WAAW,GACjB,MAAM,CA4BR;AAED,wBAAgB,eAAe,CAAC,KAAK,EAAE,WAAW,GAAG,MAAM,CAoC1D"}

package/dist/formatters/markdown.js

@@ -0,0 +1,50 @@
+export function resultsToMarkdown(results, audit) {
+    const lines = [];
+    lines.push(`## Literature Search Results`);
+    lines.push(`*${results.length} studies included across ${audit.sources_queried.length} sources*\n`);
+    if (results.length === 0) {
+        lines.push("No results found matching your query.");
+    }
+    else {
+        results.forEach((r, i) => {
+            lines.push(`### ${i + 1}. ${r.title}`);
+            lines.push(`**Source:** ${r.source} | **Date:** ${r.date} | **Type:** ${r.study_type}`);
+            if (r.authors.length > 0)
+                lines.push(`**Authors:** ${r.authors.join(", ")}`);
+            if (r.abstract)
+                lines.push(`\n${r.abstract.slice(0, 300)}${r.abstract.length > 300 ? "..." : ""}`);
+            lines.push(`**URL:** ${r.url}\n`);
+        });
+    }
+    lines.push(auditToMarkdown(audit));
+    return lines.join("\n");
+}
+export function auditToMarkdown(audit) {
+    const lines = [];
+    lines.push(`---`);
+    lines.push(`## Audit Report`);
+    lines.push(`**Tool:** ${audit.tool} | **Time:** ${audit.timestamp} | **Methodology:** ${audit.methodology || "N/A"}`);
+    lines.push(`**Total included:** ${audit.inclusions}`);
+    if (audit.sources_queried.length > 0) {
+        lines.push(`\n### Sources Queried`);
+        lines.push(`| Source | Query | Returned | Included | Status |`);
+        lines.push(`|--------|-------|----------|----------|--------|`);
+        audit.sources_queried.forEach((s) => {
+            lines.push(`| ${s.source} | \`${s.query_sent}\` | ${s.results_returned} | ${s.results_included} | ${s.status} |`);
+        });
+    }
+    if (audit.exclusions.length > 0) {
+        lines.push(`\n### Exclusions (${audit.exclusions.length})`);
+        audit.exclusions.forEach((e) => lines.push(`- ${e.title}: *${e.reason}*`));
+    }
+    if (audit.assumptions.length > 0) {
+        lines.push(`\n### Assumptions`);
+        audit.assumptions.forEach((a) => lines.push(`- ${a}`));
+    }
+    if (audit.warnings.length > 0) {
+        lines.push(`\n### Warnings`);
+        audit.warnings.forEach((w) => lines.push(`- ⚠️ ${w}`));
+    }
+    return lines.join("\n");
+}
+//# sourceMappingURL=markdown.js.map

package/dist/formatters/markdown.js.map

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package/dist/knowledge/index.d.ts

@@ -0,0 +1,8 @@
+export * from "./paths.js";
+export * from "./yaml.js";
+export * from "./rawStore.js";
+export * from "./search.js";
+export * from "./wikiStore.js";
+export * from "./projectStore.js";
+export * from "./types.js";
+//# sourceMappingURL=index.d.ts.map

package/dist/knowledge/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/knowledge/index.js

@@ -0,0 +1,8 @@
+export * from "./paths.js";
+export * from "./yaml.js";
+export * from "./rawStore.js";
+export * from "./search.js";
+export * from "./wikiStore.js";
+export * from "./projectStore.js";
+export * from "./types.js";
+//# sourceMappingURL=index.js.map

package/dist/knowledge/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/knowledge/index.ts"],"names":[],"mappings":"AAAA,cAAc,YAAY,CAAC;AAC3B,cAAc,WAAW,CAAC;AAC1B,cAAc,eAAe,CAAC;AAC9B,cAAc,aAAa,CAAC;AAC5B,cAAc,gBAAgB,CAAC;AAC/B,cAAc,mBAAmB,CAAC;AAClC,cAAc,YAAY,CAAC"}

package/dist/knowledge/paths.d.ts

@@ -0,0 +1,9 @@
+export declare function getKbRoot(): string;
+export declare function getProjectRoot(projectId: string): string;
+export declare function getRawLiteratureDir(projectId: string): string;
+export declare function getRawModelsDir(projectId: string): string;
+export declare function getRawDossiersDir(projectId: string): string;
+export declare function getWikiDir(projectId: string): string;
+export declare function sanitizeProjectId(id: string): string;
+export declare function sanitizeFilename(name: string): string;
+//# sourceMappingURL=paths.d.ts.map

package/dist/knowledge/paths.d.ts.map

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