dsh-aris-panel 0.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (442) hide show
  1. package/LICENSE +21 -0
  2. package/README.md +98 -0
  3. package/README_CN.md +87 -0
  4. package/dsh/checkout.patch.yml +38 -0
  5. package/dsh/client.js +634 -0
  6. package/dsh/cordis.patch.yml +44 -0
  7. package/dsh/index.mjs +76 -0
  8. package/dsh/run-status.mjs +182 -0
  9. package/dsh/scope-limits.mjs +50 -0
  10. package/dsh/workbench.mjs +291 -0
  11. package/mcp-servers/claude-review/README.md +93 -0
  12. package/mcp-servers/claude-review/run_with_claude_aws.sh +49 -0
  13. package/mcp-servers/claude-review/server.py +718 -0
  14. package/mcp-servers/codex-image2/README.md +65 -0
  15. package/mcp-servers/codex-image2/server.py +893 -0
  16. package/mcp-servers/feishu-bridge/requirements.txt +1 -0
  17. package/mcp-servers/feishu-bridge/server.py +240 -0
  18. package/mcp-servers/gemini-review/README.md +171 -0
  19. package/mcp-servers/gemini-review/server.py +1856 -0
  20. package/mcp-servers/llm-chat/requirements.txt +1 -0
  21. package/mcp-servers/llm-chat/server.py +664 -0
  22. package/mcp-servers/manual-review/README.md +133 -0
  23. package/mcp-servers/manual-review/server.py +910 -0
  24. package/mcp-servers/manual-review/ui.html +279 -0
  25. package/mcp-servers/minimax-chat/requirements.txt +1 -0
  26. package/mcp-servers/minimax-chat/server.py +381 -0
  27. package/package.json +51 -0
  28. package/skills/ablation-planner/SKILL.md +123 -0
  29. package/skills/alphaxiv/SKILL.md +196 -0
  30. package/skills/analyze-results/SKILL.md +46 -0
  31. package/skills/arxiv/SKILL.md +248 -0
  32. package/skills/auto-paper-improvement-loop/SKILL.md +651 -0
  33. package/skills/auto-review-loop/SKILL.md +1137 -0
  34. package/skills/auto-review-loop-llm/SKILL.md +259 -0
  35. package/skills/auto-review-loop-minimax/SKILL.md +302 -0
  36. package/skills/citation-audit/SKILL.md +502 -0
  37. package/skills/claims-drafting/SKILL.md +227 -0
  38. package/skills/comm-lit-review/SKILL.md +297 -0
  39. package/skills/deepxiv/SKILL.md +263 -0
  40. package/skills/dse-loop/SKILL.md +296 -0
  41. package/skills/embodiment-description/SKILL.md +129 -0
  42. package/skills/exa-search/SKILL.md +205 -0
  43. package/skills/experiment-audit/SKILL.md +311 -0
  44. package/skills/experiment-bridge/SKILL.md +376 -0
  45. package/skills/experiment-plan/SKILL.md +249 -0
  46. package/skills/experiment-queue/SKILL.md +431 -0
  47. package/skills/experiment-queue/scripts/build_manifest.py +142 -0
  48. package/skills/experiment-queue/scripts/queue_manager.py +433 -0
  49. package/skills/feishu-notify/SKILL.md +156 -0
  50. package/skills/figure-description/SKILL.md +138 -0
  51. package/skills/figure-spec/SKILL.md +262 -0
  52. package/skills/figure-spec/scripts/figure_renderer.py +799 -0
  53. package/skills/formula-derivation/SKILL.md +280 -0
  54. package/skills/gemini-search/SKILL.md +231 -0
  55. package/skills/grant-proposal/SKILL.md +698 -0
  56. package/skills/idea-creator/SKILL.md +542 -0
  57. package/skills/idea-discovery/SKILL.md +521 -0
  58. package/skills/idea-discovery-robot/SKILL.md +363 -0
  59. package/skills/integrity-forensics/SKILL.md +284 -0
  60. package/skills/interview-cheatsheet/SKILL.md +245 -0
  61. package/skills/invention-structuring/SKILL.md +188 -0
  62. package/skills/jurisdiction-format/SKILL.md +192 -0
  63. package/skills/kill-argument/SKILL.md +437 -0
  64. package/skills/mermaid-diagram/SKILL.md +419 -0
  65. package/skills/meta-apply/SKILL.md +141 -0
  66. package/skills/meta-optimize/SKILL.md +437 -0
  67. package/skills/monitor-experiment/SKILL.md +140 -0
  68. package/skills/novelty-check/SKILL.md +101 -0
  69. package/skills/openalex/SKILL.md +237 -0
  70. package/skills/overleaf-sync/SKILL.md +220 -0
  71. package/skills/paper-claim-audit/SKILL.md +348 -0
  72. package/skills/paper-compile/SKILL.md +266 -0
  73. package/skills/paper-figure/SKILL.md +312 -0
  74. package/skills/paper-illustration/SKILL.md +736 -0
  75. package/skills/paper-illustration-image2/SKILL.md +391 -0
  76. package/skills/paper-illustration-image2/scripts/paper_illustration_image2.py +255 -0
  77. package/skills/paper-plan/SKILL.md +386 -0
  78. package/skills/paper-poster/SKILL.md +19 -0
  79. package/skills/paper-poster-html/DESIGN_FINAL.md +176 -0
  80. package/skills/paper-poster-html/IMPLEMENTATION_CONVENTIONS.md +161 -0
  81. package/skills/paper-poster-html/LICENSES/posterly-MIT.txt +21 -0
  82. package/skills/paper-poster-html/NOTICE.md +57 -0
  83. package/skills/paper-poster-html/SKILL.md +323 -0
  84. package/skills/paper-poster-html/scripts/_posterly/__init__.py +0 -0
  85. package/skills/paper-poster-html/scripts/_posterly/canvas.py +200 -0
  86. package/skills/paper-poster-html/scripts/_posterly/measure.py +588 -0
  87. package/skills/paper-poster-html/scripts/_posterly/polish.py +498 -0
  88. package/skills/paper-poster-html/scripts/_posterly/preflight.py +489 -0
  89. package/skills/paper-poster-html/scripts/_posterly/render.py +215 -0
  90. package/skills/paper-poster-html/scripts/_posterly/textutil.py +16 -0
  91. package/skills/paper-poster-html/scripts/_posterly/verify_final.py +171 -0
  92. package/skills/paper-poster-html/scripts/asset_check.py +897 -0
  93. package/skills/paper-poster-html/scripts/extract_pdf_figures.py +666 -0
  94. package/skills/paper-poster-html/scripts/poster_check.py +251 -0
  95. package/skills/paper-poster-html/scripts/preprocess_figures.py +238 -0
  96. package/skills/paper-poster-html/scripts/render_preview.py +217 -0
  97. package/skills/paper-poster-html/scripts/run_gates.py +556 -0
  98. package/skills/paper-poster-html/scripts/style_check.py +1324 -0
  99. package/skills/paper-poster-html/templates/COMPONENTS.md +462 -0
  100. package/skills/paper-poster-html/templates/README.md +170 -0
  101. package/skills/paper-poster-html/templates/landscape_4col.html +1032 -0
  102. package/skills/paper-poster-html/templates/landscape_hero.html +1046 -0
  103. package/skills/paper-poster-html/templates/portrait_2col.html +947 -0
  104. package/skills/paper-poster-html/templates/tokens/acl.json +9 -0
  105. package/skills/paper-poster-html/templates/tokens/cvpr.json +9 -0
  106. package/skills/paper-poster-html/templates/tokens/generic.json +9 -0
  107. package/skills/paper-poster-html/templates/tokens/iclr.json +9 -0
  108. package/skills/paper-poster-html/templates/tokens/icml.json +9 -0
  109. package/skills/paper-poster-html/templates/tokens/neurips.json +9 -0
  110. package/skills/paper-slides/SKILL.md +635 -0
  111. package/skills/paper-talk/SKILL.md +381 -0
  112. package/skills/paper-write/SKILL.md +604 -0
  113. package/skills/paper-write/templates/IEEEtran.bst +2409 -0
  114. package/skills/paper-write/templates/IEEEtran.cls +6347 -0
  115. package/skills/paper-write/templates/iclr2026.tex +84 -0
  116. package/skills/paper-write/templates/icml2025.tex +87 -0
  117. package/skills/paper-write/templates/ieee_conference.tex +89 -0
  118. package/skills/paper-write/templates/ieee_journal.tex +93 -0
  119. package/skills/paper-write/templates/math_commands.tex +48 -0
  120. package/skills/paper-write/templates/neurips2025.tex +80 -0
  121. package/skills/paper-writing/SKILL.md +916 -0
  122. package/skills/patent-novelty-check/SKILL.md +153 -0
  123. package/skills/patent-pipeline/SKILL.md +344 -0
  124. package/skills/patent-review/SKILL.md +203 -0
  125. package/skills/pixel-art/SKILL.md +137 -0
  126. package/skills/prior-art-search/SKILL.md +146 -0
  127. package/skills/proof-checker/SKILL.md +866 -0
  128. package/skills/proof-orchestrator/NOTICE.md +24 -0
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  130. package/skills/proof-orchestrator/references/audit-output-contract.md +126 -0
  131. package/skills/proof-orchestrator/references/deepseek-routing.md +74 -0
  132. package/skills/proof-orchestrator/references/dispatch-prompts.md +227 -0
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  140. package/skills/render-html/scripts/render_html.py +1006 -0
  141. package/skills/render-html/scripts/templates/academic.html +703 -0
  142. package/skills/render-html/scripts/templates/dashboard.html +333 -0
  143. package/skills/research-lit/SKILL.md +756 -0
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  145. package/skills/research-refine/SKILL.md +770 -0
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  158. package/skills/shared-references/compute-env-contract.md +163 -0
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  160. package/skills/shared-references/evidence-precheck.md +65 -0
  161. package/skills/shared-references/experiment-integrity.md +49 -0
  162. package/skills/shared-references/external-cadence.md +326 -0
  163. package/skills/shared-references/fan-out-pattern.md +366 -0
  164. package/skills/shared-references/injection-hygiene.md +127 -0
  165. package/skills/shared-references/integration-contract.md +461 -0
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@@ -0,0 +1,93 @@
1
+ # Claude Review MCP
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+
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+ Bridge Codex-first ARIS workflows to the local Claude Code CLI.
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+
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+ ## What it does
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+
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+ - Keeps **Codex** as the executor
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+ - Uses **Claude Code CLI** as the external reviewer
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+ - Exposes synchronous MCP tools:
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+ - `review`
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+ - `review_reply`
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+ - Exposes asynchronous MCP tools for long reviewer prompts:
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+ - `review_start`
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+ - `review_reply_start`
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+ - `review_status`
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+
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+ The synchronous tools return a JSON string containing `threadId` and `response`.
18
+ The asynchronous start tools return a JSON string containing `jobId` and `status`, and `review_status` later returns the final `threadId` and `response`.
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+
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+ ## Install into Codex
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+
22
+ ```bash
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+ mkdir -p ~/.codex/mcp-servers/claude-review
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+ cp mcp-servers/claude-review/server.py ~/.codex/mcp-servers/claude-review/server.py
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+ codex mcp add claude-review -- python3 ~/.codex/mcp-servers/claude-review/server.py
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+ ```
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+
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+ If your Claude Code login depends on a shell function such as `claude-aws`, use the wrapper instead:
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+
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+ ```bash
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+ mkdir -p ~/.codex/mcp-servers/claude-review
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+ cp mcp-servers/claude-review/server.py ~/.codex/mcp-servers/claude-review/server.py
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+ cp mcp-servers/claude-review/run_with_claude_aws.sh ~/.codex/mcp-servers/claude-review/run_with_claude_aws.sh
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+ chmod +x ~/.codex/mcp-servers/claude-review/run_with_claude_aws.sh
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+ codex mcp add claude-review -- ~/.codex/mcp-servers/claude-review/run_with_claude_aws.sh
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+ ```
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+
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+ ## Environment Variables
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+
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+ - `CLAUDE_BIN`: Claude CLI path, defaults to `claude`
41
+ - `CLAUDE_REVIEW_MODEL`: optional reviewer model override
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+ - `CLAUDE_REVIEW_SYSTEM`: optional default system prompt
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+ - `CLAUDE_REVIEW_TOOLS`: Claude tools override, defaults to empty string
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+ - `CLAUDE_REVIEW_TIMEOUT_SEC`: subprocess timeout, defaults to `600`
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+
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+ ## Notes
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+
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+ - The bridge runs Claude in non-interactive `-p` mode.
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+ - By default the reviewer gets **no tools**. This matches the original ARIS pattern where the external reviewer only sees the prompt context prepared by the executor.
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+ - `threadId` is the native Claude session id and can be passed directly to `review_reply`.
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+ - `jobId` is a bridge-local background task id stored on disk under `~/.codex/state/claude-review/jobs/` by default, so status can be resumed across MCP server restarts.
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+
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+ ## When to use sync vs async
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+
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+ - Use `review` / `review_reply` for short prompts that comfortably finish within the host MCP tool timeout.
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+ - Use `review_start` / `review_reply_start` + `review_status` for long paper or project reviews. This avoids the observed `Codex -> tools/call` timeout around 120 seconds.
57
+
58
+ ## Async flow
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+
60
+ Start a long review:
61
+
62
+ ```json
63
+ {
64
+ "name": "review_start",
65
+ "arguments": {
66
+ "prompt": "Review this paper draft..."
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+ }
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+ }
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+ ```
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+
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+ Example response:
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+
73
+ ```json
74
+ {
75
+ "jobId": "5d8d0a9c5a2f4f42ae44f6f0c2d73f6f",
76
+ "status": "queued",
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+ "done": false
78
+ }
79
+ ```
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+
81
+ Poll later:
82
+
83
+ ```json
84
+ {
85
+ "name": "review_status",
86
+ "arguments": {
87
+ "jobId": "5d8d0a9c5a2f4f42ae44f6f0c2d73f6f",
88
+ "waitSeconds": 20
89
+ }
90
+ }
91
+ ```
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+
93
+ When complete, `review_status` returns the same reviewer payload fields as the synchronous tools, including `threadId`, `response`, `model`, and `stop_reason`.
@@ -0,0 +1,49 @@
1
+ #!/usr/bin/env zsh
2
+ set -eo pipefail
3
+
4
+ SCRIPT_DIR="$(cd "$(dirname "$0")" && pwd)"
5
+ WRAPPER_DEBUG_LOG="${CLAUDE_REVIEW_WRAPPER_DEBUG_LOG:-/tmp/claude-review-wrapper.log}"
6
+
7
+ log_wrapper() {
8
+ {
9
+ print -r -- "[$(date '+%Y-%m-%d %H:%M:%S')] $1"
10
+ } >>"$WRAPPER_DEBUG_LOG" 2>/dev/null || true
11
+ }
12
+
13
+ exec 3>&1
14
+ exec 1>/dev/null
15
+
16
+ export DISABLE_AUTO_TITLE=true
17
+ export PATH="$HOME/.local/bin:$HOME/bin:$PATH"
18
+
19
+ log_wrapper "wrapper start"
20
+ log_wrapper "PATH=$PATH"
21
+
22
+ if command -v claude-aws >/dev/null 2>&1; then
23
+ export CLAUDE_BIN="$(command -v claude-aws)"
24
+ log_wrapper "using claude-aws command: $CLAUDE_BIN"
25
+ elif [ -f "$HOME/.config/claude-bedrock/claude-bedrock-env.sh" ]; then
26
+ # Fall back to the Bedrock helper when the wrapper command is unavailable.
27
+ source "$HOME/.config/claude-bedrock/claude-bedrock-env.sh"
28
+ if ! typeset -f claude_bedrock_use_sonnet >/dev/null 2>&1; then
29
+ exec 1>&3 3>&-
30
+ echo "claude_bedrock_use_sonnet helper not found in ~/.config/claude-bedrock/claude-bedrock-env.sh" >&2
31
+ exit 1
32
+ fi
33
+ claude_bedrock_use_sonnet
34
+ if ! command -v claude >/dev/null 2>&1; then
35
+ exec 1>&3 3>&-
36
+ echo "claude command not found in PATH after sourcing claude-bedrock-env.sh" >&2
37
+ exit 127
38
+ fi
39
+ export CLAUDE_BIN="$(command -v claude)"
40
+ log_wrapper "using claude command with Bedrock env: $CLAUDE_BIN"
41
+ else
42
+ exec 1>&3 3>&-
43
+ echo "Neither claude-aws command nor ~/.config/claude-bedrock/claude-bedrock-env.sh is available" >&2
44
+ exit 1
45
+ fi
46
+
47
+ exec 1>&3 3>&-
48
+ log_wrapper "exec python3 $SCRIPT_DIR/server.py"
49
+ exec python3 "$SCRIPT_DIR/server.py"