dsh-aris-panel 0.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (442) hide show
  1. package/LICENSE +21 -0
  2. package/README.md +98 -0
  3. package/README_CN.md +87 -0
  4. package/dsh/checkout.patch.yml +38 -0
  5. package/dsh/client.js +634 -0
  6. package/dsh/cordis.patch.yml +44 -0
  7. package/dsh/index.mjs +76 -0
  8. package/dsh/run-status.mjs +182 -0
  9. package/dsh/scope-limits.mjs +50 -0
  10. package/dsh/workbench.mjs +291 -0
  11. package/mcp-servers/claude-review/README.md +93 -0
  12. package/mcp-servers/claude-review/run_with_claude_aws.sh +49 -0
  13. package/mcp-servers/claude-review/server.py +718 -0
  14. package/mcp-servers/codex-image2/README.md +65 -0
  15. package/mcp-servers/codex-image2/server.py +893 -0
  16. package/mcp-servers/feishu-bridge/requirements.txt +1 -0
  17. package/mcp-servers/feishu-bridge/server.py +240 -0
  18. package/mcp-servers/gemini-review/README.md +171 -0
  19. package/mcp-servers/gemini-review/server.py +1856 -0
  20. package/mcp-servers/llm-chat/requirements.txt +1 -0
  21. package/mcp-servers/llm-chat/server.py +664 -0
  22. package/mcp-servers/manual-review/README.md +133 -0
  23. package/mcp-servers/manual-review/server.py +910 -0
  24. package/mcp-servers/manual-review/ui.html +279 -0
  25. package/mcp-servers/minimax-chat/requirements.txt +1 -0
  26. package/mcp-servers/minimax-chat/server.py +381 -0
  27. package/package.json +51 -0
  28. package/skills/ablation-planner/SKILL.md +123 -0
  29. package/skills/alphaxiv/SKILL.md +196 -0
  30. package/skills/analyze-results/SKILL.md +46 -0
  31. package/skills/arxiv/SKILL.md +248 -0
  32. package/skills/auto-paper-improvement-loop/SKILL.md +651 -0
  33. package/skills/auto-review-loop/SKILL.md +1137 -0
  34. package/skills/auto-review-loop-llm/SKILL.md +259 -0
  35. package/skills/auto-review-loop-minimax/SKILL.md +302 -0
  36. package/skills/citation-audit/SKILL.md +502 -0
  37. package/skills/claims-drafting/SKILL.md +227 -0
  38. package/skills/comm-lit-review/SKILL.md +297 -0
  39. package/skills/deepxiv/SKILL.md +263 -0
  40. package/skills/dse-loop/SKILL.md +296 -0
  41. package/skills/embodiment-description/SKILL.md +129 -0
  42. package/skills/exa-search/SKILL.md +205 -0
  43. package/skills/experiment-audit/SKILL.md +311 -0
  44. package/skills/experiment-bridge/SKILL.md +376 -0
  45. package/skills/experiment-plan/SKILL.md +249 -0
  46. package/skills/experiment-queue/SKILL.md +431 -0
  47. package/skills/experiment-queue/scripts/build_manifest.py +142 -0
  48. package/skills/experiment-queue/scripts/queue_manager.py +433 -0
  49. package/skills/feishu-notify/SKILL.md +156 -0
  50. package/skills/figure-description/SKILL.md +138 -0
  51. package/skills/figure-spec/SKILL.md +262 -0
  52. package/skills/figure-spec/scripts/figure_renderer.py +799 -0
  53. package/skills/formula-derivation/SKILL.md +280 -0
  54. package/skills/gemini-search/SKILL.md +231 -0
  55. package/skills/grant-proposal/SKILL.md +698 -0
  56. package/skills/idea-creator/SKILL.md +542 -0
  57. package/skills/idea-discovery/SKILL.md +521 -0
  58. package/skills/idea-discovery-robot/SKILL.md +363 -0
  59. package/skills/integrity-forensics/SKILL.md +284 -0
  60. package/skills/interview-cheatsheet/SKILL.md +245 -0
  61. package/skills/invention-structuring/SKILL.md +188 -0
  62. package/skills/jurisdiction-format/SKILL.md +192 -0
  63. package/skills/kill-argument/SKILL.md +437 -0
  64. package/skills/mermaid-diagram/SKILL.md +419 -0
  65. package/skills/meta-apply/SKILL.md +141 -0
  66. package/skills/meta-optimize/SKILL.md +437 -0
  67. package/skills/monitor-experiment/SKILL.md +140 -0
  68. package/skills/novelty-check/SKILL.md +101 -0
  69. package/skills/openalex/SKILL.md +237 -0
  70. package/skills/overleaf-sync/SKILL.md +220 -0
  71. package/skills/paper-claim-audit/SKILL.md +348 -0
  72. package/skills/paper-compile/SKILL.md +266 -0
  73. package/skills/paper-figure/SKILL.md +312 -0
  74. package/skills/paper-illustration/SKILL.md +736 -0
  75. package/skills/paper-illustration-image2/SKILL.md +391 -0
  76. package/skills/paper-illustration-image2/scripts/paper_illustration_image2.py +255 -0
  77. package/skills/paper-plan/SKILL.md +386 -0
  78. package/skills/paper-poster/SKILL.md +19 -0
  79. package/skills/paper-poster-html/DESIGN_FINAL.md +176 -0
  80. package/skills/paper-poster-html/IMPLEMENTATION_CONVENTIONS.md +161 -0
  81. package/skills/paper-poster-html/LICENSES/posterly-MIT.txt +21 -0
  82. package/skills/paper-poster-html/NOTICE.md +57 -0
  83. package/skills/paper-poster-html/SKILL.md +323 -0
  84. package/skills/paper-poster-html/scripts/_posterly/__init__.py +0 -0
  85. package/skills/paper-poster-html/scripts/_posterly/canvas.py +200 -0
  86. package/skills/paper-poster-html/scripts/_posterly/measure.py +588 -0
  87. package/skills/paper-poster-html/scripts/_posterly/polish.py +498 -0
  88. package/skills/paper-poster-html/scripts/_posterly/preflight.py +489 -0
  89. package/skills/paper-poster-html/scripts/_posterly/render.py +215 -0
  90. package/skills/paper-poster-html/scripts/_posterly/textutil.py +16 -0
  91. package/skills/paper-poster-html/scripts/_posterly/verify_final.py +171 -0
  92. package/skills/paper-poster-html/scripts/asset_check.py +897 -0
  93. package/skills/paper-poster-html/scripts/extract_pdf_figures.py +666 -0
  94. package/skills/paper-poster-html/scripts/poster_check.py +251 -0
  95. package/skills/paper-poster-html/scripts/preprocess_figures.py +238 -0
  96. package/skills/paper-poster-html/scripts/render_preview.py +217 -0
  97. package/skills/paper-poster-html/scripts/run_gates.py +556 -0
  98. package/skills/paper-poster-html/scripts/style_check.py +1324 -0
  99. package/skills/paper-poster-html/templates/COMPONENTS.md +462 -0
  100. package/skills/paper-poster-html/templates/README.md +170 -0
  101. package/skills/paper-poster-html/templates/landscape_4col.html +1032 -0
  102. package/skills/paper-poster-html/templates/landscape_hero.html +1046 -0
  103. package/skills/paper-poster-html/templates/portrait_2col.html +947 -0
  104. package/skills/paper-poster-html/templates/tokens/acl.json +9 -0
  105. package/skills/paper-poster-html/templates/tokens/cvpr.json +9 -0
  106. package/skills/paper-poster-html/templates/tokens/generic.json +9 -0
  107. package/skills/paper-poster-html/templates/tokens/iclr.json +9 -0
  108. package/skills/paper-poster-html/templates/tokens/icml.json +9 -0
  109. package/skills/paper-poster-html/templates/tokens/neurips.json +9 -0
  110. package/skills/paper-slides/SKILL.md +635 -0
  111. package/skills/paper-talk/SKILL.md +381 -0
  112. package/skills/paper-write/SKILL.md +604 -0
  113. package/skills/paper-write/templates/IEEEtran.bst +2409 -0
  114. package/skills/paper-write/templates/IEEEtran.cls +6347 -0
  115. package/skills/paper-write/templates/iclr2026.tex +84 -0
  116. package/skills/paper-write/templates/icml2025.tex +87 -0
  117. package/skills/paper-write/templates/ieee_conference.tex +89 -0
  118. package/skills/paper-write/templates/ieee_journal.tex +93 -0
  119. package/skills/paper-write/templates/math_commands.tex +48 -0
  120. package/skills/paper-write/templates/neurips2025.tex +80 -0
  121. package/skills/paper-writing/SKILL.md +916 -0
  122. package/skills/patent-novelty-check/SKILL.md +153 -0
  123. package/skills/patent-pipeline/SKILL.md +344 -0
  124. package/skills/patent-review/SKILL.md +203 -0
  125. package/skills/pixel-art/SKILL.md +137 -0
  126. package/skills/prior-art-search/SKILL.md +146 -0
  127. package/skills/proof-checker/SKILL.md +866 -0
  128. package/skills/proof-orchestrator/NOTICE.md +24 -0
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  130. package/skills/proof-orchestrator/references/audit-output-contract.md +126 -0
  131. package/skills/proof-orchestrator/references/deepseek-routing.md +74 -0
  132. package/skills/proof-orchestrator/references/dispatch-prompts.md +227 -0
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  140. package/skills/render-html/scripts/render_html.py +1006 -0
  141. package/skills/render-html/scripts/templates/academic.html +703 -0
  142. package/skills/render-html/scripts/templates/dashboard.html +333 -0
  143. package/skills/research-lit/SKILL.md +756 -0
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  145. package/skills/research-refine/SKILL.md +770 -0
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  158. package/skills/shared-references/compute-env-contract.md +163 -0
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  160. package/skills/shared-references/evidence-precheck.md +65 -0
  161. package/skills/shared-references/experiment-integrity.md +49 -0
  162. package/skills/shared-references/external-cadence.md +326 -0
  163. package/skills/shared-references/fan-out-pattern.md +366 -0
  164. package/skills/shared-references/injection-hygiene.md +127 -0
  165. package/skills/shared-references/integration-contract.md +461 -0
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@@ -0,0 +1,47 @@
1
+ # Paper Plan
2
+
3
+ > **Template for Workflow 3 — skip planning phase.** Fill in, then run `/paper-writing "PAPER_PLAN.md"`.
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+
5
+ ## Metadata
6
+ - **Title**: [Title]
7
+ - **Venue**: [ICLR / NeurIPS / ICML]
8
+ - **One-sentence contribution**: [Core takeaway]
9
+
10
+ ## Claims-Evidence Matrix
11
+ | # | Claim | Evidence | Section |
12
+ |---|-------|----------|---------|
13
+ | C1 | [Main claim] | [Table 1, Exp A] | §3 |
14
+ | C2 | [Supporting] | [Figure 2] | §4 |
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+
16
+ ## Section Plan
17
+
18
+ ### 1. Introduction (~1.5 pages)
19
+ - **What**: [contribution]
20
+ - **Why**: [importance]
21
+ - **How**: [approach]
22
+ - **Result**: [strongest number]
23
+
24
+ ### 2. Related Work (~1 page)
25
+ - [Group 1]: [papers, gap]
26
+ - [Group 2]: [papers, gap]
27
+
28
+ ### 3. Method (~2 pages)
29
+ - [Problem formulation]
30
+ - [Proposed approach]
31
+
32
+ ### 4. Experiments (~3 pages)
33
+ - [Setup, main results, ablation]
34
+
35
+ ### 5. Conclusion (~0.5 pages)
36
+ - [Summary, limitations, future]
37
+
38
+ ## Figure Plan
39
+ | # | Type | Description | Auto? |
40
+ |---|------|-------------|:-----:|
41
+ | Fig 1 | Architecture | Method overview | illustration |
42
+ | Fig 2 | Bar chart | Main results | matplotlib |
43
+ | Table 1 | Comparison | SOTA | LaTeX |
44
+
45
+ ## Key References
46
+ 1. [Author et al., "Title", Venue Year]
47
+ 2. [...]
@@ -0,0 +1,78 @@
1
+ # Patent Claims Worksheet
2
+
3
+ > **Template for pre-drafting claims structure.** Fill in before running `/claims-drafting`, or use as a reference during claim drafting.
4
+
5
+ ## Invention Summary
6
+ [One-sentence description of the core inventive concept.]
7
+
8
+ ## Independent Claims Plan
9
+
10
+ ### Claim 1: Method Claim (broadest)
11
+ - **Preamble**: A method for [purpose], comprising:
12
+ - **Known features** (from prior art):
13
+ 1. [feature A]
14
+ 2. [feature B]
15
+ - **Inventive features** (novel):
16
+ 1. [feature C]
17
+ 2. [feature D]
18
+ - **Transition**: comprising / characterised in that (per jurisdiction)
19
+
20
+ ### Claim X: System/Apparatus Claim (mirrors Claim 1)
21
+ - **Preamble**: A system for [purpose], comprising:
22
+ - **Structural components mapping to method steps**:
23
+ 1. [component corresponding to step 1]
24
+ 2. [component corresponding to step 2]
25
+ ...
26
+
27
+ ### Claim Y: Computer-Readable Medium Claim (US only, optional)
28
+ - Maps to method claim 1
29
+
30
+ ## Dependent Claims Plan
31
+
32
+ | Claim # | Depends On | Adds Feature | Fallback Value |
33
+ |---------|-----------|-------------|----------------|
34
+ | 2 | 1 | [specific limitation of feature C] | Medium |
35
+ | 3 | 1 | [specific limitation of feature D] | Medium |
36
+ | 4 | 2 | [additional narrowing] | Low |
37
+ | 5 | 1 or 2 | [alternative implementation of C] | High |
38
+
39
+ ## Claims Hierarchy (dependency tree)
40
+
41
+ ```
42
+ 1. (Independent — method, broadest)
43
+ ├── 2. (narrows feature C)
44
+ │ └── 4. (narrows further)
45
+ ├── 3. (narrows feature D)
46
+ ├── 5. (alternative to 2 or 3)
47
+ │
48
+ X. (Independent — system, mirrors 1)
49
+ ├── X+1. (narrows component)
50
+ ├── X+2. (narrows component)
51
+ │
52
+ Y. (Independent — medium, US only, mirrors 1)
53
+ ```
54
+
55
+ ## Prior Art Avoidance Matrix
56
+
57
+ | Claim Element | Prior Art Reference | Avoidance Strategy |
58
+ |---------------|--------------------|--------------------|
59
+ | Feature C | [Ref X] | Ref X uses different approach... |
60
+ | Feature D | [Ref Y] | Ref Y doesn't combine C+D... |
61
+ | Combination C+D | [Ref X + Y] | No motivation to combine... |
62
+
63
+ ## Jurisdiction-Specific Formatting Notes
64
+
65
+ ### CN (Chinese)
66
+ - Use "其特征在于" to separate known and inventive features
67
+ - Method: "一种...的方法,包括:...;其特征在于,还包括:..."
68
+ - Apparatus: "一种...的装置,包括:...;其特征在于,还包括:..."
69
+
70
+ ### US
71
+ - Use "comprising" (open transition)
72
+ - Method: "A method for [purpose], comprising: [step A]; [step B];..."
73
+ - System: "A system for [purpose], comprising: [component A]; [component B];..."
74
+
75
+ ### EP
76
+ - Two-part form MANDATORY (Rule 43(1) EPC)
77
+ - "A method for [purpose], comprising [known features], characterised in that [inventive features]."
78
+ - "A system for [purpose], comprising [known components], characterised in that [inventive components]."
@@ -0,0 +1,68 @@
1
+ # Patent Specification Skeleton
2
+
3
+ > **Template for `/specification-writing`.** Provides pre-structured sections. The skill fills in content based on INVENTION_DISCLOSURE.md and CLAIMS.md.
4
+
5
+ ## Metadata
6
+ - **Title**: [发明名称 / Title of Invention]
7
+ - **Jurisdiction**: [CN / US / EP / ALL]
8
+ - **Patent Type**: [Invention / Utility Model]
9
+ - **Language**: [Chinese / English]
10
+
11
+ ## 1. Technical Field (技术领域)
12
+ [1-2 paragraphs identifying the technical domain]
13
+
14
+ ## 2. Background Technology (背景技术)
15
+ ### 2.1 Existing Approaches
16
+ [Describe the closest prior art — patents, papers, or products]
17
+
18
+ ### 2.2 Deficiencies
19
+ [Identify specific technical deficiencies of existing approaches]
20
+
21
+ ## 3. Summary of Invention (发明内容)
22
+
23
+ ### 3.1 Technical Problem
24
+ [State the problem derived from background deficiencies]
25
+
26
+ ### 3.2 Technical Solution
27
+ [Describe the invention's solution, matching the scope of the claims]
28
+
29
+ ### 3.3 Advantages
30
+ [Measurable/quantifiable benefits over prior art]
31
+
32
+ ## 4. Brief Description of Drawings (附图说明)
33
+
34
+ | Figure | Description |
35
+ |--------|-------------|
36
+ | FIG. 1 | [one-sentence description] |
37
+ | FIG. 2 | [one-sentence description] |
38
+ | FIG. 3 | [one-sentence description] |
39
+
40
+ ## 5. Detailed Description of Embodiments (具体实施方式)
41
+
42
+ ### Embodiment 1: [Title]
43
+ [Detailed description with reference numerals. How to make and use the invention.]
44
+
45
+ ### Embodiment 2: [Title — optional]
46
+ [Alternative embodiment supporting broader claim interpretation]
47
+
48
+ ## 6. Abstract (摘要)
49
+ [150 words (US) / 300 words (CN). Summary of technical solution and key advantages.]
50
+
51
+ ## Reference Numeral Index
52
+
53
+ | Numeral | Component | Figure(s) |
54
+ |---------|-----------|-----------|
55
+ | 100 | [system] | Fig. 1 |
56
+ | 102 | [processor] | Fig. 1 |
57
+ | 104 | [memory] | Fig. 1 |
58
+ | 200 | [process] | Fig. 2 |
59
+ | 202 | [step A] | Fig. 2 |
60
+
61
+ ## Claim-to-Specification Support Map
62
+
63
+ | Claim Element | Specification Paragraph(s) | Figure(s) |
64
+ |---------------|---------------------------|-----------|
65
+ | [feature A] | ¶X | Fig. 1 |
66
+ | [feature B] | ¶X-Y | Fig. 1, 2 |
67
+ | [feature C] | ¶Z | Fig. 2 |
68
+ | [feature D] | ¶Z-A | Fig. 2, 3 |
@@ -0,0 +1,57 @@
1
+ # Templates
2
+
3
+ Ready-to-use templates for each ARIS workflow. Copy, fill in your content, and run the corresponding skill.
4
+
5
+ ### Workflow Input Templates
6
+
7
+ | Template | For Workflow | What to do |
8
+ |----------|-------------|------------|
9
+ | [RESEARCH_BRIEF_TEMPLATE.md](RESEARCH_BRIEF_TEMPLATE.md) | Workflow 1 | Detailed research direction as document input |
10
+ | [RESEARCH_CONTRACT_TEMPLATE.md](RESEARCH_CONTRACT_TEMPLATE.md) | Workflow 1 | Define problem boundaries, non-goals, timeline before starting |
11
+ | [EXPERIMENT_PLAN_TEMPLATE.md](EXPERIMENT_PLAN_TEMPLATE.md) | Workflow 1.5 | Claim-driven experiment roadmap with run order and budgets |
12
+ | [NARRATIVE_REPORT_TEMPLATE.md](NARRATIVE_REPORT_TEMPLATE.md) | Workflow 3 | Research narrative with claims, experiments, results |
13
+ | [PAPER_PLAN_TEMPLATE.md](PAPER_PLAN_TEMPLATE.md) | Workflow 3 | Pre-made outline to skip planning phase |
14
+ | [CLAUDE_MD_TEMPLATE.md](CLAUDE_MD_TEMPLATE.md) | All Workflows | Project dashboard with Pipeline Status — create once per project |
15
+ | [MANIFEST_TEMPLATE.md](MANIFEST_TEMPLATE.md) | All Workflows | Output tracking manifest — auto-maintained by skills |
16
+
17
+ ### Chinese Templates (中文模板)
18
+
19
+ | Template | For Workflow | What to do |
20
+ |----------|-------------|------------|
21
+ | [RESEARCH_BRIEF_TEMPLATE_CN.md](RESEARCH_BRIEF_TEMPLATE_CN.md) | Workflow 1 | 研究简报中文模板 |
22
+ | [IDEA_CANDIDATES_TEMPLATE_CN.md](IDEA_CANDIDATES_TEMPLATE_CN.md) | Workflow 1 | Idea 候选池中文模板 |
23
+ | [EXPERIMENT_PLAN_TEMPLATE_CN.md](EXPERIMENT_PLAN_TEMPLATE_CN.md) | Workflow 1.5 | 实验计划中文模板 |
24
+
25
+ ### Patent Templates (`/patent-pipeline`)
26
+
27
+ | Template | For Workflow | What to do |
28
+ |----------|-------------|------------|
29
+ | [INVENTION_BRIEF_TEMPLATE.md](INVENTION_BRIEF_TEMPLATE.md) | Patent Pipeline | Invention disclosure with technical problem, solution, advantages, figures |
30
+ | [PATENT_CLAIMS_TEMPLATE.md](PATENT_CLAIMS_TEMPLATE.md) | `/claims-drafting` | Claims hierarchy worksheet with examples for CN/US/EP |
31
+ | [PATENT_SPECIFICATION_TEMPLATE.md](PATENT_SPECIFICATION_TEMPLATE.md) | `/specification-writing` | Skeleton specification with all required sections |
32
+
33
+ ### Compact Mode Templates (`— compact: true`)
34
+
35
+ | Template | Written by | Purpose |
36
+ |----------|-----------|---------|
37
+ | [IDEA_CANDIDATES_TEMPLATE.md](IDEA_CANDIDATES_TEMPLATE.md) | `/idea-discovery` | Top 3-5 surviving ideas (lean, not full 12-idea report) |
38
+ | [EXPERIMENT_LOG_TEMPLATE.md](EXPERIMENT_LOG_TEMPLATE.md) | `/experiment-bridge` | Structured experiment record (results + reproduction commands) |
39
+ | [FINDINGS_TEMPLATE.md](FINDINGS_TEMPLATE.md) | `/auto-review-loop` | One-line-per-finding discovery log (anomalies, decisions) |
40
+
41
+ ## Usage
42
+
43
+ ### Research Pipeline
44
+
45
+ ```bash
46
+ cp templates/EXPERIMENT_PLAN_TEMPLATE.md refine-logs/EXPERIMENT_PLAN.md
47
+ # Edit with your content, then:
48
+ /experiment-bridge
49
+ ```
50
+
51
+ ### Patent Pipeline
52
+
53
+ ```bash
54
+ cp templates/INVENTION_BRIEF_TEMPLATE.md patent/INVENTION_BRIEF.md
55
+ # Edit with your invention details, then:
56
+ /patent-pipeline "patent/INVENTION_BRIEF.md -- CN"
57
+ ```
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1
+ # Research Brief
2
+
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+ > **Template for document-based input to `/idea-discovery` or `/research-pipeline`.** Provide detailed context instead of a one-line prompt.
4
+ >
5
+ > **Length guideline:** keep the core brief to **1–2 pages (~4–8k chars)**. The research-wiki `query_pack.md` that downstream skills consume is hard-capped at 8,000 chars — an oversized brief crowds out gaps / failed-ideas / paper context. Put long material (full notes, logs, draft text) in separate files and reference them by path.
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+
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+ ## Problem Statement
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+ [2-3 paragraphs: What is broken/missing in current approaches?]
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+
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+ ## Background
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+ - **Field**: [e.g., NLP, CV, RL]
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+ - **Sub-area**: [e.g., discrete diffusion models]
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+ - **Key papers I've read**: [3-5 papers]
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+ - **What I already tried**: [Prior experiments]
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+ - **What didn't work**: [Failed attempts and why]
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+
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+ ## Constraints
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+ - **Compute**: [e.g., 8x RTX 3090, 100 GPU-hours]
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+ - **Timeline**: [e.g., 3 months to submission]
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+ - **Target venue**: [e.g., NeurIPS 2026]
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+
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+ ## What I'm Looking For
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+ - [ ] New research direction from scratch
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+ - [ ] Improvement on existing method: [which?]
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+ - [ ] Diagnostic study / analysis paper
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+ - [ ] Other: [describe]
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+
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+ ## Domain Knowledge
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+ [Intuitions, hypotheses, domain-specific insights]
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+
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+ ## Non-Goals
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+ [What you do NOT want to work on]
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+
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+ ## Existing Results (if any)
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+ [Preliminary results, tables, observations — even negative results help]
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1
+ # 研究简报
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+
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+ > **用于 `/idea-discovery` 或 `/research-pipeline` 的文档化输入模板。** 提供详细上下文,替代一行式提示。
4
+ >
5
+ > **长度建议**:核心简报控制在 **1–2 页(约 4–8k 字符)**。下游消费的 research-wiki `query_pack.md` 有 8,000 字符硬上限——简报过长会挤占 gaps / 失败 idea / 论文上下文的空间。长材料(完整笔记、日志、草稿)放单独文件,按路径引用。
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+
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+ ## 问题陈述
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+ [2-3 段:当前方法存在什么问题/缺失?]
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+
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+ ## 背景
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+
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+ - **领域**: [如:NLP、CV、RL]
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+ - **子方向**: [如:离散扩散模型]
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+ - **已读关键论文**: [3-5 篇]
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+ - **已尝试的方法**: [之前的实验]
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+ - **失败经验**: [哪些方法没有效果,为什么]
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+
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+ ## 约束条件
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+
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+ - **算力**: [如:8x RTX 3090,100 GPU 小时]
21
+ - **时间线**: [如:3 个月内投稿]
22
+ - **目标会议/期刊**: [如:NeurIPS 2026]
23
+
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+ ## 期望方向
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+
26
+ - [ ] 从零开始探索新研究方向
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+ - [ ] 改进现有方法:[哪个?]
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+ - [ ] 诊断性研究 / 分析型论文
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+ - [ ] 其他:[描述]
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+
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+ ## 领域知识
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+
33
+ [直觉、假设、领域特定的洞察]
34
+
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+ ## 非目标
36
+
37
+ [明确不想做的事情]
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+
39
+ ## 已有结果(如有)
40
+
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+ [初步结果、表格、观察 — 即使是负面结果也有帮助]
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1
+ # Research Contract: [Idea Name]
2
+
3
+ > **A focused working document for the currently selected idea.** Created when an idea is chosen from `IDEA_REPORT.md`, updated throughout implementation and training. This is what the LLM reads on session recovery — not the full IDEA_REPORT with all 8-12 candidates.
4
+ >
5
+ > **Why this file exists:** After brainstorming, `IDEA_REPORT.md` contains many candidate ideas. Keeping all of them in context pollutes the LLM's working memory and degrades output quality. This contract extracts *only the active idea* into a standalone document, so new sessions and post-compaction recovery load focused context instead of the entire idea pool.
6
+
7
+ ## Selected Idea
8
+
9
+ - **Description**: [One-paragraph summary of the idea]
10
+ - **Source**: IDEA_REPORT.md, Idea #N
11
+ - **Selection rationale**: [Why this idea over others — pilot results, novelty score, feasibility]
12
+
13
+ ## Core Claims
14
+
15
+ 1. [Main claim — what your method achieves]
16
+ 2. [Supporting claim — why it works / when it works best]
17
+ 3. [Optional: scope/limitation claim]
18
+
19
+ ## Method Summary
20
+
21
+ [2-3 paragraphs: How the method works. Enough detail that a new session can understand the approach without reading the full codebase.]
22
+
23
+ ## Experiment Design
24
+
25
+ - **Datasets**: [Which datasets, which splits]
26
+ - **Baselines**: [What you compare against]
27
+ - **Metrics**: [Primary and secondary metrics]
28
+ - **Key hyperparameters**: [The ones that matter most]
29
+ - **Compute budget**: [GPU hours, hardware]
30
+
31
+ ## Baselines
32
+
33
+ | Method | Dataset | Metric | Score | Source |
34
+ |--------|---------|--------|-------|--------|
35
+ | [Baseline A] | [Dataset] | [Metric] | [Number] | [Paper / reproduced] |
36
+ | [Baseline B] | [Dataset] | [Metric] | [Number] | [Paper / reproduced] |
37
+
38
+ ## Current Results
39
+
40
+ > Updated as experiments complete. Start empty, fill in as you go.
41
+
42
+ | Method | Dataset | Metric | Score | Notes |
43
+ |--------|---------|--------|-------|-------|
44
+ | [Your method] | [Dataset] | [Metric] | [Number] | [e.g., "3 seeds, mean±std"] |
45
+
46
+ ## Key Decisions
47
+
48
+ - [Decision 1: Why approach X over Y — with reasoning]
49
+ - [Decision 2: Why this hyperparameter / architecture choice]
50
+ - [Known limitations / risks and how you plan to handle them]
51
+
52
+ ## Status
53
+
54
+ - [ ] Idea selected
55
+ - [ ] Baseline reproduced
56
+ - [ ] Main method implemented
57
+ - [ ] Representative dataset results
58
+ - [ ] Full dataset results
59
+ - [ ] Ablation studies
60
+ - [ ] Paper draft
@@ -0,0 +1,16 @@
1
+ {
2
+ "_comment": "Merge this into your project's .claude/settings.json. Blocks the COMMON Bash shell-write patterns to the skill corpus (a regex blacklist, NOT a sandbox — a deliberately obfuscated write is not all caught; detection via provenance integrity is the backstop, not this regex). With a read-only producer (meta-optimize / corpus-audit) holding Bash but no Write/Edit, this removes the casual Bash-write path; it does not gate the Write/Edit tools. Adjust the path to corpus_write_guard.py for your checkout (or resolve via the canonical chain).",
3
+ "hooks": {
4
+ "PreToolUse": [
5
+ {
6
+ "matcher": "Bash",
7
+ "hooks": [
8
+ {
9
+ "type": "command",
10
+ "command": "python3 \"${CLAUDE_PROJECT_DIR}/templates/claude-hooks/corpus_write_guard.py\""
11
+ }
12
+ ]
13
+ }
14
+ ]
15
+ }
16
+ }
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1
+ #!/usr/bin/env python3
2
+ """PreToolUse guard: deny Bash writes to the ARIS skill corpus.
3
+
4
+ Why: a read-only PRODUCER skill (meta-optimize, corpus-audit) is given no `Write`/
5
+ `Edit` tool so it cannot mutate the corpus with the frictionless mutators. But a skill
6
+ that retains *any* `Bash` access can still write a corpus file via shell redirection
7
+ (`cat > skills/x`, `sed -i ... skills/x`, `tee skills/x`, `cp/mv ... skills/x`) — which
8
+ no `allowed-tools` allowlist can block, because redirection is appended after the matched
9
+ command prefix. The only place to enforce "Bash may not write the corpus" is the harness:
10
+ this PreToolUse hook inspects the actual command and DENIES corpus-write shell ops.
11
+
12
+ Invariant this establishes (with the producer holding Bash-but-no-Write/Edit):
13
+ corpus mutation MUST go through the Write/Edit tools (reviewable, attributable) —
14
+ never an opaque Bash redirection. So a producer with no Write/Edit + this hook
15
+ active is STRUCTURALLY unable to mutate the corpus by any path.
16
+
17
+ Scope: this guard is GLOBAL (not skill-scoped — hooks have no reliable skill context).
18
+ It blocks Bash *corpus writes* for every skill; legitimate corpus edits (yours, and
19
+ /meta-apply's landing) use the Write/Edit tools and are unaffected. Blocking opaque
20
+ shell writes to the corpus is good hygiene regardless of who runs.
21
+
22
+ Threat model: closes the ACCIDENTAL/casual self-acquittal path (an honest producer
23
+ slipping into `cat > skills/...`). A determined adversary can still obfuscate a write
24
+ (`p=skills/x; printf ... >"$p"`); defense-in-depth against that is the provenance
25
+ integrity check (an un-stamped / stale-hash corpus change is detectable before push),
26
+ not this regex. This hook is the cheap, harness-level prevention layer, not a sandbox.
27
+
28
+ Install: add to .claude/settings.json hooks.PreToolUse (matcher "Bash"); see
29
+ templates/claude-hooks/corpus_write_guard.json. Exit 2 = block + reason to the model.
30
+ """
31
+
32
+ from __future__ import annotations
33
+
34
+ import json
35
+ import re
36
+ import sys
37
+
38
+ # Corpus = the parts of the repo a self-modification producer must never write via Bash.
39
+ _CORPUS = r"(?:\./)?(?:skills|shared-references|tools|templates|plugins)/"
40
+
41
+ # Shell ops that WRITE a path. Each pattern is "write-operator ... targeting a corpus path".
42
+ _WRITE_OPS = [
43
+ re.compile(r">>?\s*\"?'?" + _CORPUS), # > corpus / >> corpus
44
+ re.compile(r"\btee\s+(?:-a\s+)?\"?'?" + _CORPUS), # tee [-a] corpus
45
+ re.compile(r"\bsed\s+(?:-[a-zA-Z]*\s+)*-i\b[^|;&]*" + _CORPUS), # sed -i ... corpus
46
+ re.compile(r"\bdd\b[^|;&]*\bof=\"?'?" + _CORPUS), # dd of=corpus
47
+ re.compile(r"\b(?:cp|mv|install|rsync|ln)\b[^|;&]*\s\"?'?" + _CORPUS), # cp/mv/... corpus (as dest)
48
+ re.compile(r"\btruncate\b[^|;&]*" + _CORPUS),
49
+ re.compile(r"\btouch\s+[^|;&]*" + _CORPUS), # touch corpus (create)
50
+ re.compile(r"\.write_(?:text|bytes)\b[^|;&]*" + _CORPUS), # Path(...).write_text into corpus
51
+ re.compile(_CORPUS + r"[^'\"]*['\"]\s*\)\s*\.write_(?:text|bytes)"), # Path('corpus..').write_text
52
+ re.compile(r"\b(?:python3?|perl|ruby|node)\b[^|;&]*open\([^)]*" + _CORPUS), # open('skills/..','w')
53
+ ]
54
+
55
+
56
+ def violates(command: str) -> str | None:
57
+ for rx in _WRITE_OPS:
58
+ m = rx.search(command)
59
+ if m:
60
+ return command[m.start():m.start() + 80]
61
+ return None
62
+
63
+
64
+ def main() -> int:
65
+ try:
66
+ data = json.load(sys.stdin)
67
+ except Exception:
68
+ return 0 # malformed input → don't block (fail open on parse, not on match)
69
+ if data.get("tool_name") != "Bash":
70
+ return 0
71
+ command = (data.get("tool_input") or {}).get("command", "") or ""
72
+ hit = violates(command)
73
+ if hit:
74
+ sys.stderr.write(
75
+ "BLOCKED by corpus_write_guard: Bash may not WRITE the skill corpus "
76
+ f"(matched: {hit!r}). Corpus mutation must go through the Write/Edit tools "
77
+ "(reviewable, attributable). A read-only producer (meta-optimize / corpus-"
78
+ "audit) stages patches to .aris/meta/ and hands off to /meta-apply, which "
79
+ "lands them with the Write/Edit tools after the cross-model jury + human gate.\n")
80
+ return 2 # PreToolUse: block the call, show stderr to the model
81
+ return 0
82
+
83
+
84
+ if __name__ == "__main__":
85
+ raise SystemExit(main())
@@ -0,0 +1,74 @@
1
+ {
2
+ "$comment": "ARIS Meta-Optimize: Passive event logging for harness optimization. Copy to .claude/settings.json or merge into existing settings.",
3
+ "hooks": {
4
+ "PostToolUse": [
5
+ {
6
+ "matcher": "",
7
+ "hooks": [
8
+ {
9
+ "type": "command",
10
+ "command": "bash \"$CLAUDE_PROJECT_DIR/tools/meta_opt/log_event.sh\"",
11
+ "timeout": 5,
12
+ "async": true
13
+ }
14
+ ]
15
+ }
16
+ ],
17
+ "PostToolUseFailure": [
18
+ {
19
+ "matcher": "",
20
+ "hooks": [
21
+ {
22
+ "type": "command",
23
+ "command": "bash \"$CLAUDE_PROJECT_DIR/tools/meta_opt/log_event.sh\"",
24
+ "timeout": 5,
25
+ "async": true
26
+ }
27
+ ]
28
+ }
29
+ ],
30
+ "UserPromptSubmit": [
31
+ {
32
+ "hooks": [
33
+ {
34
+ "type": "command",
35
+ "command": "bash \"$CLAUDE_PROJECT_DIR/tools/meta_opt/log_event.sh\"",
36
+ "timeout": 5,
37
+ "async": true
38
+ }
39
+ ]
40
+ }
41
+ ],
42
+ "SessionStart": [
43
+ {
44
+ "matcher": "",
45
+ "hooks": [
46
+ {
47
+ "type": "command",
48
+ "command": "bash \"$CLAUDE_PROJECT_DIR/tools/meta_opt/log_event.sh\"",
49
+ "timeout": 5,
50
+ "async": true
51
+ }
52
+ ]
53
+ }
54
+ ],
55
+ "SessionEnd": [
56
+ {
57
+ "matcher": "",
58
+ "hooks": [
59
+ {
60
+ "type": "command",
61
+ "command": "bash \"$CLAUDE_PROJECT_DIR/tools/meta_opt/log_event.sh\"",
62
+ "timeout": 5,
63
+ "async": true
64
+ },
65
+ {
66
+ "type": "command",
67
+ "command": "bash \"$CLAUDE_PROJECT_DIR/tools/meta_opt/check_ready.sh\"",
68
+ "timeout": 5
69
+ }
70
+ ]
71
+ }
72
+ ]
73
+ }
74
+ }
@@ -0,0 +1,3 @@
1
+ # ARIS Review Tracing — add these lines to your project's .gitignore
2
+ # Traces contain full LLM prompts/responses and should stay project-local.
3
+ .aris/traces/