dsh-aris-panel 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +21 -0
- package/README.md +98 -0
- package/README_CN.md +87 -0
- package/dsh/checkout.patch.yml +38 -0
- package/dsh/client.js +634 -0
- package/dsh/cordis.patch.yml +44 -0
- package/dsh/index.mjs +76 -0
- package/dsh/run-status.mjs +182 -0
- package/dsh/scope-limits.mjs +50 -0
- package/dsh/workbench.mjs +291 -0
- package/mcp-servers/claude-review/README.md +93 -0
- package/mcp-servers/claude-review/run_with_claude_aws.sh +49 -0
- package/mcp-servers/claude-review/server.py +718 -0
- package/mcp-servers/codex-image2/README.md +65 -0
- package/mcp-servers/codex-image2/server.py +893 -0
- package/mcp-servers/feishu-bridge/requirements.txt +1 -0
- package/mcp-servers/feishu-bridge/server.py +240 -0
- package/mcp-servers/gemini-review/README.md +171 -0
- package/mcp-servers/gemini-review/server.py +1856 -0
- package/mcp-servers/llm-chat/requirements.txt +1 -0
- package/mcp-servers/llm-chat/server.py +664 -0
- package/mcp-servers/manual-review/README.md +133 -0
- package/mcp-servers/manual-review/server.py +910 -0
- package/mcp-servers/manual-review/ui.html +279 -0
- package/mcp-servers/minimax-chat/requirements.txt +1 -0
- package/mcp-servers/minimax-chat/server.py +381 -0
- package/package.json +51 -0
- package/skills/ablation-planner/SKILL.md +123 -0
- package/skills/alphaxiv/SKILL.md +196 -0
- package/skills/analyze-results/SKILL.md +46 -0
- package/skills/arxiv/SKILL.md +248 -0
- package/skills/auto-paper-improvement-loop/SKILL.md +651 -0
- package/skills/auto-review-loop/SKILL.md +1137 -0
- package/skills/auto-review-loop-llm/SKILL.md +259 -0
- package/skills/auto-review-loop-minimax/SKILL.md +302 -0
- package/skills/citation-audit/SKILL.md +502 -0
- package/skills/claims-drafting/SKILL.md +227 -0
- package/skills/comm-lit-review/SKILL.md +297 -0
- package/skills/deepxiv/SKILL.md +263 -0
- package/skills/dse-loop/SKILL.md +296 -0
- package/skills/embodiment-description/SKILL.md +129 -0
- package/skills/exa-search/SKILL.md +205 -0
- package/skills/experiment-audit/SKILL.md +311 -0
- package/skills/experiment-bridge/SKILL.md +376 -0
- package/skills/experiment-plan/SKILL.md +249 -0
- package/skills/experiment-queue/SKILL.md +431 -0
- package/skills/experiment-queue/scripts/build_manifest.py +142 -0
- package/skills/experiment-queue/scripts/queue_manager.py +433 -0
- package/skills/feishu-notify/SKILL.md +156 -0
- package/skills/figure-description/SKILL.md +138 -0
- package/skills/figure-spec/SKILL.md +262 -0
- package/skills/figure-spec/scripts/figure_renderer.py +799 -0
- package/skills/formula-derivation/SKILL.md +280 -0
- package/skills/gemini-search/SKILL.md +231 -0
- package/skills/grant-proposal/SKILL.md +698 -0
- package/skills/idea-creator/SKILL.md +542 -0
- package/skills/idea-discovery/SKILL.md +521 -0
- package/skills/idea-discovery-robot/SKILL.md +363 -0
- package/skills/integrity-forensics/SKILL.md +284 -0
- package/skills/interview-cheatsheet/SKILL.md +245 -0
- package/skills/invention-structuring/SKILL.md +188 -0
- package/skills/jurisdiction-format/SKILL.md +192 -0
- package/skills/kill-argument/SKILL.md +437 -0
- package/skills/mermaid-diagram/SKILL.md +419 -0
- package/skills/meta-apply/SKILL.md +141 -0
- package/skills/meta-optimize/SKILL.md +437 -0
- package/skills/monitor-experiment/SKILL.md +140 -0
- package/skills/novelty-check/SKILL.md +101 -0
- package/skills/openalex/SKILL.md +237 -0
- package/skills/overleaf-sync/SKILL.md +220 -0
- package/skills/paper-claim-audit/SKILL.md +348 -0
- package/skills/paper-compile/SKILL.md +266 -0
- package/skills/paper-figure/SKILL.md +312 -0
- package/skills/paper-illustration/SKILL.md +736 -0
- package/skills/paper-illustration-image2/SKILL.md +391 -0
- package/skills/paper-illustration-image2/scripts/paper_illustration_image2.py +255 -0
- package/skills/paper-plan/SKILL.md +386 -0
- package/skills/paper-poster/SKILL.md +19 -0
- package/skills/paper-poster-html/DESIGN_FINAL.md +176 -0
- package/skills/paper-poster-html/IMPLEMENTATION_CONVENTIONS.md +161 -0
- package/skills/paper-poster-html/LICENSES/posterly-MIT.txt +21 -0
- package/skills/paper-poster-html/NOTICE.md +57 -0
- package/skills/paper-poster-html/SKILL.md +323 -0
- package/skills/paper-poster-html/scripts/_posterly/__init__.py +0 -0
- package/skills/paper-poster-html/scripts/_posterly/canvas.py +200 -0
- package/skills/paper-poster-html/scripts/_posterly/measure.py +588 -0
- package/skills/paper-poster-html/scripts/_posterly/polish.py +498 -0
- package/skills/paper-poster-html/scripts/_posterly/preflight.py +489 -0
- package/skills/paper-poster-html/scripts/_posterly/render.py +215 -0
- package/skills/paper-poster-html/scripts/_posterly/textutil.py +16 -0
- package/skills/paper-poster-html/scripts/_posterly/verify_final.py +171 -0
- package/skills/paper-poster-html/scripts/asset_check.py +897 -0
- package/skills/paper-poster-html/scripts/extract_pdf_figures.py +666 -0
- package/skills/paper-poster-html/scripts/poster_check.py +251 -0
- package/skills/paper-poster-html/scripts/preprocess_figures.py +238 -0
- package/skills/paper-poster-html/scripts/render_preview.py +217 -0
- package/skills/paper-poster-html/scripts/run_gates.py +556 -0
- package/skills/paper-poster-html/scripts/style_check.py +1324 -0
- package/skills/paper-poster-html/templates/COMPONENTS.md +462 -0
- package/skills/paper-poster-html/templates/README.md +170 -0
- package/skills/paper-poster-html/templates/landscape_4col.html +1032 -0
- package/skills/paper-poster-html/templates/landscape_hero.html +1046 -0
- package/skills/paper-poster-html/templates/portrait_2col.html +947 -0
- package/skills/paper-poster-html/templates/tokens/acl.json +9 -0
- package/skills/paper-poster-html/templates/tokens/cvpr.json +9 -0
- package/skills/paper-poster-html/templates/tokens/generic.json +9 -0
- package/skills/paper-poster-html/templates/tokens/iclr.json +9 -0
- package/skills/paper-poster-html/templates/tokens/icml.json +9 -0
- package/skills/paper-poster-html/templates/tokens/neurips.json +9 -0
- package/skills/paper-slides/SKILL.md +635 -0
- package/skills/paper-talk/SKILL.md +381 -0
- package/skills/paper-write/SKILL.md +604 -0
- package/skills/paper-write/templates/IEEEtran.bst +2409 -0
- package/skills/paper-write/templates/IEEEtran.cls +6347 -0
- package/skills/paper-write/templates/iclr2026.tex +84 -0
- package/skills/paper-write/templates/icml2025.tex +87 -0
- package/skills/paper-write/templates/ieee_conference.tex +89 -0
- package/skills/paper-write/templates/ieee_journal.tex +93 -0
- package/skills/paper-write/templates/math_commands.tex +48 -0
- package/skills/paper-write/templates/neurips2025.tex +80 -0
- package/skills/paper-writing/SKILL.md +916 -0
- package/skills/patent-novelty-check/SKILL.md +153 -0
- package/skills/patent-pipeline/SKILL.md +344 -0
- package/skills/patent-review/SKILL.md +203 -0
- package/skills/pixel-art/SKILL.md +137 -0
- package/skills/prior-art-search/SKILL.md +146 -0
- package/skills/proof-checker/SKILL.md +866 -0
- package/skills/proof-orchestrator/NOTICE.md +24 -0
- package/skills/proof-orchestrator/SKILL.md +254 -0
- package/skills/proof-orchestrator/references/audit-output-contract.md +126 -0
- package/skills/proof-orchestrator/references/deepseek-routing.md +74 -0
- package/skills/proof-orchestrator/references/dispatch-prompts.md +227 -0
- package/skills/proof-orchestrator/references/notation-audit.md +135 -0
- package/skills/proof-orchestrator/references/proof-audit-rubric.md +70 -0
- package/skills/proof-orchestrator/references/stress-tests.md +38 -0
- package/skills/proof-writer/SKILL.md +223 -0
- package/skills/qzcli/SKILL.md +324 -0
- package/skills/rebuttal/SKILL.md +376 -0
- package/skills/render-html/SKILL.md +316 -0
- package/skills/render-html/scripts/render_html.py +1006 -0
- package/skills/render-html/scripts/templates/academic.html +703 -0
- package/skills/render-html/scripts/templates/dashboard.html +333 -0
- package/skills/research-lit/SKILL.md +756 -0
- package/skills/research-pipeline/SKILL.md +384 -0
- package/skills/research-refine/SKILL.md +770 -0
- package/skills/research-refine-pipeline/SKILL.md +186 -0
- package/skills/research-review/SKILL.md +198 -0
- package/skills/research-wiki/SKILL.md +461 -0
- package/skills/resubmit-pipeline/SKILL.md +447 -0
- package/skills/result-to-claim/SKILL.md +311 -0
- package/skills/run-experiment/SKILL.md +313 -0
- package/skills/semantic-scholar/SKILL.md +236 -0
- package/skills/serverless-modal/SKILL.md +335 -0
- package/skills/shared-references/acceptance-gate.md +324 -0
- package/skills/shared-references/assurance-contract.md +248 -0
- package/skills/shared-references/capture-antipatterns.md +78 -0
- package/skills/shared-references/citation-discipline.md +583 -0
- package/skills/shared-references/compute-env-contract.md +163 -0
- package/skills/shared-references/effort-contract.md +183 -0
- package/skills/shared-references/evidence-precheck.md +65 -0
- package/skills/shared-references/experiment-integrity.md +49 -0
- package/skills/shared-references/external-cadence.md +326 -0
- package/skills/shared-references/fan-out-pattern.md +366 -0
- package/skills/shared-references/injection-hygiene.md +127 -0
- package/skills/shared-references/integration-contract.md +461 -0
- package/skills/shared-references/output-composition.md +93 -0
- package/skills/shared-references/output-language.md +45 -0
- package/skills/shared-references/output-manifest.md +49 -0
- package/skills/shared-references/output-versioning.md +111 -0
- package/skills/shared-references/patent-format-cn.md +199 -0
- package/skills/shared-references/patent-format-ep.md +173 -0
- package/skills/shared-references/patent-format-us.md +161 -0
- package/skills/shared-references/patent-writing-principles.md +197 -0
- package/skills/shared-references/prior-art-databases.md +141 -0
- package/skills/shared-references/resumable-runs.md +109 -0
- package/skills/shared-references/review-scope-limits.md +81 -0
- package/skills/shared-references/review-tracing.md +391 -0
- package/skills/shared-references/reviewer-independence.md +79 -0
- package/skills/shared-references/reviewer-routing.md +852 -0
- package/skills/shared-references/skill-governance.md +104 -0
- package/skills/shared-references/taste-calibration.md +85 -0
- package/skills/shared-references/venue-checklists.md +114 -0
- package/skills/shared-references/wiki-helper-resolution.md +134 -0
- package/skills/shared-references/writing-principles.md +525 -0
- package/skills/skills-codex/README.md +102 -0
- package/skills/skills-codex/README_CN.md +100 -0
- package/skills/skills-codex/ablation-planner/SKILL.md +126 -0
- package/skills/skills-codex/alphaxiv/SKILL.md +186 -0
- package/skills/skills-codex/analyze-results/SKILL.md +45 -0
- package/skills/skills-codex/arxiv/SKILL.md +210 -0
- package/skills/skills-codex/auto-paper-improvement-loop/SKILL.md +574 -0
- package/skills/skills-codex/auto-review-loop/SKILL.md +500 -0
- package/skills/skills-codex/auto-review-loop-llm/SKILL.md +247 -0
- package/skills/skills-codex/auto-review-loop-minimax/SKILL.md +290 -0
- package/skills/skills-codex/citation-audit/SKILL.md +504 -0
- package/skills/skills-codex/claims-drafting/SKILL.md +239 -0
- package/skills/skills-codex/comm-lit-review/SKILL.md +299 -0
- package/skills/skills-codex/comm-lit-review/references/domain-taxonomy.md +57 -0
- package/skills/skills-codex/comm-lit-review/references/output-template.md +37 -0
- package/skills/skills-codex/comm-lit-review/references/source-policy.md +99 -0
- package/skills/skills-codex/comm-lit-review/references/venue-tiering.md +112 -0
- package/skills/skills-codex/deepxiv/SKILL.md +142 -0
- package/skills/skills-codex/dse-loop/SKILL.md +285 -0
- package/skills/skills-codex/embodiment-description/SKILL.md +129 -0
- package/skills/skills-codex/exa-search/SKILL.md +192 -0
- package/skills/skills-codex/experiment-audit/SKILL.md +286 -0
- package/skills/skills-codex/experiment-bridge/SKILL.md +356 -0
- package/skills/skills-codex/experiment-plan/SKILL.md +249 -0
- package/skills/skills-codex/experiment-queue/SKILL.md +401 -0
- package/skills/skills-codex/feishu-notify/SKILL.md +155 -0
- package/skills/skills-codex/figure-description/SKILL.md +138 -0
- package/skills/skills-codex/figure-spec/SKILL.md +252 -0
- package/skills/skills-codex/formula-derivation/SKILL.md +280 -0
- package/skills/skills-codex/gemini-search/SKILL.md +205 -0
- package/skills/skills-codex/grant-proposal/SKILL.md +626 -0
- package/skills/skills-codex/idea-creator/SKILL.md +405 -0
- package/skills/skills-codex/idea-discovery/SKILL.md +475 -0
- package/skills/skills-codex/idea-discovery-robot/SKILL.md +362 -0
- package/skills/skills-codex/integrity-forensics/SKILL.md +106 -0
- package/skills/skills-codex/interview-cheatsheet/SKILL.md +245 -0
- package/skills/skills-codex/invention-structuring/SKILL.md +188 -0
- package/skills/skills-codex/jurisdiction-format/SKILL.md +192 -0
- package/skills/skills-codex/kill-argument/SKILL.md +403 -0
- package/skills/skills-codex/mermaid-diagram/SKILL.md +379 -0
- package/skills/skills-codex/meta-apply/SKILL.md +154 -0
- package/skills/skills-codex/meta-optimize/SKILL.md +348 -0
- package/skills/skills-codex/monitor-experiment/SKILL.md +98 -0
- package/skills/skills-codex/novelty-check/SKILL.md +89 -0
- package/skills/skills-codex/openalex/SKILL.md +228 -0
- package/skills/skills-codex/overleaf-sync/SKILL.md +220 -0
- package/skills/skills-codex/paper-claim-audit/SKILL.md +350 -0
- package/skills/skills-codex/paper-compile/SKILL.md +253 -0
- package/skills/skills-codex/paper-figure/SKILL.md +311 -0
- package/skills/skills-codex/paper-illustration/SKILL.md +690 -0
- package/skills/skills-codex/paper-illustration-image2/SKILL.md +383 -0
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- package/skills/skills-codex/paper-plan/SKILL.md +278 -0
- package/skills/skills-codex/paper-poster/SKILL.md +19 -0
- package/skills/skills-codex/paper-poster-html/SKILL.md +377 -0
- package/skills/skills-codex/paper-slides/SKILL.md +571 -0
- package/skills/skills-codex/paper-talk/SKILL.md +381 -0
- package/skills/skills-codex/paper-write/SKILL.md +411 -0
- package/skills/skills-codex/paper-write/templates/IEEEtran.bst +2409 -0
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- package/skills/skills-codex/shared-references/acceptance-gate.md +336 -0
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- package/skills/skills-codex/shared-references/evidence-precheck.md +73 -0
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- package/skills/skills-codex/shared-references/external-cadence.md +334 -0
- package/skills/skills-codex/shared-references/fan-out-pattern.md +375 -0
- package/skills/skills-codex/shared-references/injection-hygiene.md +132 -0
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- package/skills/skills-codex/shared-references/patent-format-ep.md +173 -0
- package/skills/skills-codex/shared-references/patent-format-us.md +161 -0
- package/skills/skills-codex/shared-references/patent-writing-principles.md +197 -0
- package/skills/skills-codex/shared-references/prior-art-databases.md +141 -0
- package/skills/skills-codex/shared-references/resumable-runs.md +125 -0
- package/skills/skills-codex/shared-references/review-scope-limits.md +81 -0
- package/skills/skills-codex/shared-references/review-tracing.md +144 -0
- package/skills/skills-codex/shared-references/reviewer-independence.md +66 -0
- package/skills/skills-codex/shared-references/reviewer-routing.md +128 -0
- package/skills/skills-codex/shared-references/skill-governance.md +119 -0
- package/skills/skills-codex/shared-references/taste-calibration.md +90 -0
- package/skills/skills-codex/shared-references/venue-checklists.md +73 -0
- package/skills/skills-codex/shared-references/wiki-helper-resolution.md +69 -0
- package/skills/skills-codex/shared-references/writing-principles.md +525 -0
- package/skills/skills-codex/slides-polish/SKILL.md +563 -0
- package/skills/skills-codex/specification-writing/SKILL.md +211 -0
- package/skills/skills-codex/system-profile/SKILL.md +103 -0
- package/skills/skills-codex/training-check/SKILL.md +83 -0
- package/skills/skills-codex/vast-gpu/SKILL.md +394 -0
- package/skills/skills-codex/web-debug-search/SKILL.md +334 -0
- package/skills/skills-codex/wiki-enrich/SKILL.md +255 -0
- package/skills/skills-codex/writing-systems-papers/SKILL.md +184 -0
- package/skills/skills-codex-claude-review/README.md +79 -0
- package/skills/skills-codex-claude-review/README_CN.md +78 -0
- package/skills/skills-codex-claude-review/auto-paper-improvement-loop/SKILL.md +581 -0
- package/skills/skills-codex-claude-review/auto-review-loop/SKILL.md +510 -0
- package/skills/skills-codex-claude-review/novelty-check/SKILL.md +102 -0
- package/skills/skills-codex-claude-review/paper-figure/SKILL.md +319 -0
- package/skills/skills-codex-claude-review/paper-plan/SKILL.md +287 -0
- package/skills/skills-codex-claude-review/paper-write/SKILL.md +420 -0
- package/skills/skills-codex-claude-review/research-refine/SKILL.md +732 -0
- package/skills/skills-codex-claude-review/research-review/SKILL.md +149 -0
- package/skills/skills-codex-gemini-review/README.md +176 -0
- package/skills/skills-codex-gemini-review/README_CN.md +175 -0
- package/skills/skills-codex-gemini-review/auto-paper-improvement-loop/SKILL.md +331 -0
- package/skills/skills-codex-gemini-review/auto-review-loop/SKILL.md +304 -0
- package/skills/skills-codex-gemini-review/grant-proposal/SKILL.md +630 -0
- package/skills/skills-codex-gemini-review/idea-creator/SKILL.md +263 -0
- package/skills/skills-codex-gemini-review/idea-discovery/SKILL.md +275 -0
- package/skills/skills-codex-gemini-review/idea-discovery-robot/SKILL.md +365 -0
- package/skills/skills-codex-gemini-review/novelty-check/SKILL.md +92 -0
- package/skills/skills-codex-gemini-review/paper-figure/SKILL.md +289 -0
- package/skills/skills-codex-gemini-review/paper-plan/SKILL.md +265 -0
- package/skills/skills-codex-gemini-review/paper-poster-html/SKILL.md +102 -0
- package/skills/skills-codex-gemini-review/paper-slides/SKILL.md +582 -0
- package/skills/skills-codex-gemini-review/paper-write/SKILL.md +346 -0
- package/skills/skills-codex-gemini-review/paper-writing/SKILL.md +312 -0
- package/skills/skills-codex-gemini-review/research-refine/SKILL.md +674 -0
- package/skills/skills-codex-gemini-review/research-review/SKILL.md +112 -0
- package/skills/slides-polish/SKILL.md +565 -0
- package/skills/specification-writing/SKILL.md +211 -0
- package/skills/system-profile/SKILL.md +103 -0
- package/skills/training-check/SKILL.md +132 -0
- package/skills/vast-gpu/SKILL.md +394 -0
- package/skills/web-debug-search/SKILL.md +334 -0
- package/skills/wiki-enrich/SKILL.md +257 -0
- package/skills/writing-systems-papers/SKILL.md +184 -0
- package/templates/CLAUDE_MD_TEMPLATE.md +29 -0
- package/templates/EXPERIMENT_LOG_TEMPLATE.md +47 -0
- package/templates/EXPERIMENT_PLAN_TEMPLATE.md +51 -0
- package/templates/EXPERIMENT_PLAN_TEMPLATE_CN.md +53 -0
- package/templates/FINDINGS_TEMPLATE.md +52 -0
- package/templates/IDEA_CANDIDATES_TEMPLATE.md +47 -0
- package/templates/IDEA_CANDIDATES_TEMPLATE_CN.md +47 -0
- package/templates/INVENTION_BRIEF_TEMPLATE.md +87 -0
- package/templates/MANIFEST_TEMPLATE.md +7 -0
- package/templates/NARRATIVE_REPORT_TEMPLATE.md +49 -0
- package/templates/PAPER_PLAN_TEMPLATE.md +47 -0
- package/templates/PATENT_CLAIMS_TEMPLATE.md +78 -0
- package/templates/PATENT_SPECIFICATION_TEMPLATE.md +68 -0
- package/templates/README.md +57 -0
- package/templates/RESEARCH_BRIEF_TEMPLATE.md +35 -0
- package/templates/RESEARCH_BRIEF_TEMPLATE_CN.md +41 -0
- package/templates/RESEARCH_CONTRACT_TEMPLATE.md +60 -0
- package/templates/claude-hooks/corpus_write_guard.json +16 -0
- package/templates/claude-hooks/corpus_write_guard.py +85 -0
- package/templates/claude-hooks/meta_logging.json +74 -0
- package/templates/gitignore-trace.txt +3 -0
- package/tools/__pycache__/check_skills_inventory.cpython-314.pyc +0 -0
- package/tools/arxiv_fetch.py +311 -0
- package/tools/capture_filter.py +126 -0
- package/tools/check_skills_inventory.py +273 -0
- package/tools/convert_skills_to_llm_chat.py +282 -0
- package/tools/copilot_native_evidence.py +818 -0
- package/tools/deepxiv_fetch.py +213 -0
- package/tools/evidence_check.py +212 -0
- package/tools/exa_search.py +425 -0
- package/tools/experiment_queue/README.md +118 -0
- package/tools/experiment_queue/build_manifest.py +44 -0
- package/tools/experiment_queue/queue_manager.py +44 -0
- package/tools/extract_paper_style.py +560 -0
- package/tools/figure_renderer.py +69 -0
- package/tools/forensics_gate.py +669 -0
- package/tools/generate_codex_claude_review_overrides.py +299 -0
- package/tools/idea_discovery_gate.py +256 -0
- package/tools/install_aris.ps1 +1372 -0
- package/tools/install_aris.sh +1370 -0
- package/tools/install_aris_codex.sh +1023 -0
- package/tools/install_aris_copilot.sh +1052 -0
- package/tools/iteration_log.py +143 -0
- package/tools/lint_skills_helpers.sh +84 -0
- package/tools/meta_opt/check_ready.sh +80 -0
- package/tools/meta_opt/log_event.sh +91 -0
- package/tools/meta_opt/trigger_eval.py +280 -0
- package/tools/meta_opt/trigger_evals.sample.json +28 -0
- package/tools/openalex_fetch.py +326 -0
- package/tools/overleaf_audit.sh +104 -0
- package/tools/overleaf_setup.sh +150 -0
- package/tools/paper_illustration_image2.py +62 -0
- package/tools/provenance.py +294 -0
- package/tools/research_wiki.py +1720 -0
- package/tools/review_gate.py +502 -0
- package/tools/run_state.py +399 -0
- package/tools/save_trace.sh +477 -0
- package/tools/semantic_scholar_fetch.py +438 -0
- package/tools/skill-groups.tsv +116 -0
- package/tools/skill_picker.py +238 -0
- package/tools/smart_update.ps1 +521 -0
- package/tools/smart_update.sh +591 -0
- package/tools/smart_update_codex.sh +419 -0
- package/tools/smart_update_copilot.sh +605 -0
- package/tools/threat_scan.py +222 -0
- package/tools/verify_paper_audits.sh +487 -0
- package/tools/verify_papers.py +613 -0
- package/tools/verify_wiki_coverage.sh +176 -0
- package/tools/watchdog.py +485 -0
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---
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name: "paper-figure"
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description: "Generate publication-quality figures and tables from experiment results. Use when user says \"画图\", \"作图\", \"generate figures\", \"paper figures\", or needs plots for a paper."
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---
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> Override for Codex users who want **Gemini**, not a second Codex agent, to act as the reviewer. Install this package **after** `skills/skills-codex/*`.
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# Paper Figure: Publication-Quality Plots from Experiment Data
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> **Gemini overlay assurance:** `review_independence: cross-family` and `acceptance_status: accepted`.
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Generate all figures and tables for a paper based on: **$ARGUMENTS**
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## Scope: What This Skill Can and Cannot Do
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| Category | Can auto-generate? | Examples |
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|----------|-------------------|----------|
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| **Data-driven plots** | ✅ Yes | Line plots (training curves), bar charts (method comparison), scatter plots, heatmaps, box/violin plots |
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| **Comparison tables** | ✅ Yes | LaTeX tables comparing prior bounds, method features, ablation results |
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| **Multi-panel figures** | ✅ Yes | Subfigure grids combining multiple plots (e.g., 3×3 dataset × method) |
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| **Architecture/pipeline diagrams** | ❌ No — manual | Model architecture, data flow diagrams, system overviews. At best can generate a rough TikZ skeleton, but **expect to draw these yourself** using tools like draw.io, Figma, or TikZ |
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| **Generated image grids** | ❌ No — manual | Grids of generated samples (e.g., GAN/diffusion outputs). These come from running your model, not from this skill |
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| **Photographs / screenshots** | ❌ No — manual | Real-world images, UI screenshots, qualitative examples |
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**In practice:** For a typical ML paper, this skill handles ~60% of figures (all data plots + tables). The remaining ~40% (hero figure, architecture diagram, qualitative results) need to be created manually and placed in `figures/` before running `/paper-write`. The skill will detect these as "existing figures" and preserve them.
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## Constants
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- **STYLE = `publication`** — Visual style preset. Options: `publication` (default, clean for print), `poster` (larger fonts), `slide` (bold colors)
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- **DPI = 300** — Output resolution
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- **FORMAT = `pdf`** — Output format. Options: `pdf` (vector, best for LaTeX), `png` (raster fallback)
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- **COLOR_PALETTE = `tab10`** — Default matplotlib color cycle. Options: `tab10`, `Set2`, `colorblind` (deuteranopia-safe)
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- **FONT_SIZE = 10** — Base font size (matches typical conference body text)
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- **FIG_DIR = `figures/`** — Output directory for generated figures
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- **REVIEWER_MODEL = `gemini-review`** — Gemini reviewer invoked through the local `gemini-review` MCP bridge. Set `GEMINI_REVIEW_MODEL` if you need a specific Gemini model override.
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## Inputs
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1. **PAPER_PLAN.md** — figure plan table (from `/paper-plan`)
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2. **Experiment data** — JSON files, CSV files, or screen logs in `figures/` or project root
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3. **Existing figures** — any manually created figures to preserve
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If no PAPER_PLAN.md exists, scan for data files and ask the user which figures to generate.
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## Workflow
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### Step 1: Read Figure Plan
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Parse the Figure Plan table from PAPER_PLAN.md:
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```markdown
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| ID | Type | Description | Data Source | Priority |
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|----|------|-------------|-------------|----------|
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| Fig 1 | Architecture | ... | manual | HIGH |
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| Fig 2 | Line plot | ... | figures/exp.json | HIGH |
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```
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Identify:
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- Which figures can be auto-generated from data
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- Which need manual creation (architecture diagrams, etc.)
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- Which are comparison tables (generate as LaTeX)
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### Step 2: Set Up Plotting Environment
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Create a shared style configuration script:
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```python
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# paper_plot_style.py — shared across all figure scripts
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import matplotlib.pyplot as plt
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import matplotlib
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matplotlib.rcParams.update({
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'font.size': FONT_SIZE,
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'font.family': 'serif',
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'font.serif': ['Times New Roman', 'Times', 'DejaVu Serif'],
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'axes.labelsize': FONT_SIZE,
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'axes.titlesize': FONT_SIZE + 1,
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'xtick.labelsize': FONT_SIZE - 1,
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'ytick.labelsize': FONT_SIZE - 1,
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'legend.fontsize': FONT_SIZE - 1,
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'figure.dpi': DPI,
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'savefig.dpi': DPI,
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'savefig.bbox': 'tight',
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'savefig.pad_inches': 0.05,
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'axes.grid': False,
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'axes.spines.top': False,
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'axes.spines.right': False,
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'text.usetex': False, # set True if LaTeX is available
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'mathtext.fontset': 'stix',
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})
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# Color palette
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COLORS = plt.cm.tab10.colors # or Set2, or colorblind-safe
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def save_fig(fig, name, fmt=FORMAT):
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"""Save figure to FIG_DIR with consistent naming."""
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fig.savefig(f'{FIG_DIR}/{name}.{fmt}')
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print(f'Saved: {FIG_DIR}/{name}.{fmt}')
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```
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### Step 3: Auto-Select Figure Type
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Use this decision tree for data-driven figures (inspired by Imbad0202/academic-research-skills):
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| Data Pattern | Recommended Type | Size |
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|-------------|-----------------|------|
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| X=time/steps, Y=metric | Line plot | 0.48\textwidth |
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| Methods × 1 metric | Bar chart | 0.48\textwidth |
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| Methods × multiple metrics | Grouped bar / radar | 0.95\textwidth |
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| Two continuous variables | Scatter plot | 0.48\textwidth |
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| Matrix / grid values | Heatmap | 0.48\textwidth |
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| Distribution comparison | Box/violin plot | 0.48\textwidth |
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| Multi-dataset results | Multi-panel (subfigure) | 0.95\textwidth |
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| Prior work comparison | LaTeX table | — |
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### Step 4: Generate Each Figure
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For each figure in the plan, create a standalone Python script:
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**Line plots** (training curves, scaling):
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```python
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# gen_fig2_training_curves.py
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from paper_plot_style import *
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import json
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with open('figures/exp_results.json') as f:
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data = json.load(f)
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fig, ax = plt.subplots(1, 1, figsize=(5, 3.5))
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ax.plot(data['steps'], data['fac_loss'], label='Factorized', color=COLORS[0])
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ax.plot(data['steps'], data['crf_loss'], label='CRF-LR', color=COLORS[1])
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ax.set_xlabel('Training Steps')
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ax.set_ylabel('Cross-Entropy Loss')
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ax.legend(frameon=False)
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save_fig(fig, 'fig2_training_curves')
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```
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**Bar charts** (comparison, ablation):
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```python
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fig, ax = plt.subplots(1, 1, figsize=(5, 3))
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methods = ['Baseline', 'Method A', 'Method B', 'Ours']
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values = [82.3, 85.1, 86.7, 89.2]
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bars = ax.bar(methods, values, color=[COLORS[i] for i in range(len(methods))])
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ax.set_ylabel('Accuracy (%)')
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# Add value labels on bars
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for bar, val in zip(bars, values):
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ax.text(bar.get_x() + bar.get_width()/2, bar.get_height() + 0.3,
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f'{val:.1f}', ha='center', va='bottom', fontsize=FONT_SIZE-1)
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save_fig(fig, 'fig3_comparison')
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```
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**Comparison tables** (LaTeX, for theory papers):
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```latex
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\begin{table}[t]
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\centering
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\caption{Comparison of estimation error bounds. $n$: sample size, $D$: ambient dim, $d$: latent dim, $K$: subspaces, $n_k$: modes.}
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\label{tab:bounds}
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\begin{tabular}{lccc}
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\toprule
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Method & Rate & Depends on $D$? & Multi-modal? \\
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\midrule
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\citet{MinimaxOkoAS23} & $n^{-s'/D}$ & Yes (curse) & No \\
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\citet{ScoreMatchingdistributionrecovery} & $n^{-2/d}$ & No & No \\
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\textbf{Ours} & $\sqrt{\sum n_k d_k / n}$ & No & Yes \\
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\bottomrule
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\end{tabular}
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\end{table}
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```
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**Architecture/pipeline diagrams** (MANUAL — outside this skill's scope):
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- These require manual creation using draw.io, Figma, Keynote, or TikZ
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- This skill can generate a rough TikZ skeleton as a starting point, but **do not expect publication-quality results**
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- If the figure already exists in `figures/`, preserve it and generate only the LaTeX `\includegraphics` snippet
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- Flag as `[MANUAL]` in the figure plan and `latex_includes.tex`
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### Step 5: Run All Scripts
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```bash
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# Run all figure generation scripts
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for script in gen_fig*.py; do
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python "$script"
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done
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```
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Verify all output files exist and are non-empty.
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### Step 6: Generate LaTeX Include Snippets
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For each figure, output the LaTeX code to include it:
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```latex
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% === Fig 2: Training Curves ===
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\begin{figure}[t]
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\centering
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\includegraphics[width=0.48\textwidth]{figures/fig2_training_curves.pdf}
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\caption{Training curves comparing factorized and CRF-LR denoising.}
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\label{fig:training_curves}
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\end{figure}
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```
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Save all snippets to `figures/latex_includes.tex` for easy copy-paste into the paper.
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### Step 7: Figure Quality Review with REVIEWER_MODEL
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Send figure descriptions and captions to Gemini for review:
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```
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mcp__gemini-review__review_start:
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prompt: |
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3. Is the comparison fair and clear?
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5. Would a different visualization be more effective?
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[list all figures with captions and descriptions]
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```
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After this start call, immediately save the returned `jobId` and poll `mcp__gemini-review__review_status` with a bounded `waitSeconds` until `done=true`. Treat the completed status payload's `response` as the reviewer output, and save the completed `threadId` for any follow-up round.
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### Step 8: Quality Checklist
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Before finishing, verify each figure (from pedrohcgs/claude-code-my-workflow):
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- [ ] Font size readable at printed paper size (not too small)
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- [ ] Colors distinguishable in grayscale (print-friendly)
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- [ ] **No title inside figures** — titles go only in LaTeX `\caption{}` (from pedrohcgs)
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- [ ] Legend does not overlap data
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- [ ] Axis labels have units where applicable
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- [ ] Axis labels are publication-quality (not variable names like `emp_rate`)
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- [ ] Figure width fits single column (0.48\textwidth) or full width (0.95\textwidth)
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- [ ] PDF output is vector (not rasterized text)
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- [ ] No matplotlib default title (remove `plt.title` for publications)
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- [ ] Serif font matches paper body text (Times / Computer Modern)
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- [ ] Colorblind-accessible (if using colorblind palette)
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## Output
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```
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figures/
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├── paper_plot_style.py # shared style config
|
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├── gen_fig1_architecture.py # per-figure scripts
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├── gen_fig2_training_curves.py
|
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├── gen_fig3_comparison.py
|
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├── fig1_architecture.pdf # generated figures
|
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├── fig2_training_curves.pdf
|
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├── fig3_comparison.pdf
|
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├── latex_includes.tex # LaTeX snippets for all figures
|
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└── TABLE_*.tex # standalone table LaTeX files
|
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+
```
|
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## Output Protocols
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> Follow these shared protocols for all output files:
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> - **[Output Versioning Protocol](../../shared-references/output-versioning.md)** — write timestamped file first, then copy to fixed name
|
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> - **[Output Manifest Protocol](../../shared-references/output-manifest.md)** — log every output to MANIFEST.md
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> - **[Output Language Protocol](../../shared-references/output-language.md)** — respect the project's language setting
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## Key Rules
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- **Every figure must be reproducible** — save the generation script alongside the output
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- **Do NOT hardcode data** — always read from JSON/CSV files
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- **Use vector format (PDF)** for all plots — PNG only as fallback
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- **No decorative elements** — no background colors, no 3D effects, no chart junk
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- **Consistent style across all figures** — same fonts, colors, line widths
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- **Colorblind-safe** — verify with https://davidmathlogic.com/colorblind/ if needed
|
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- **One script per figure** — easy to re-run individual figures when data changes
|
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- **No titles inside figures** — captions are in LaTeX only
|
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- **Comparison tables count as figures** — generate them as standalone .tex files
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|
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## Figure Type Reference
|
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| Type | When to Use | Typical Size |
|
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|------|------------|--------------|
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| Line plot | Training curves, scaling trends | 0.48\textwidth |
|
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| Bar chart | Method comparison, ablation | 0.48\textwidth |
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| Grouped bar | Multi-metric comparison | 0.95\textwidth |
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| Scatter plot | Correlation analysis | 0.48\textwidth |
|
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| Heatmap | Attention, confusion matrix | 0.48\textwidth |
|
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| Box/violin | Distribution comparison | 0.48\textwidth |
|
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| Architecture | System overview | 0.95\textwidth |
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| Multi-panel | Combined results (subfigures) | 0.95\textwidth |
|
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| Comparison table | Prior bounds vs. ours (theory) | full width |
|
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|
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## Acknowledgements
|
|
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|
+
|
|
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|
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Design pattern (type × style matrix) inspired by [baoyu-skills](https://github.com/jimliu/baoyu-skills). Publication style defaults and figure rules from [pedrohcgs/claude-code-my-workflow](https://github.com/pedrohcgs/claude-code-my-workflow). Visualization decision tree from [Imbad0202/academic-research-skills](https://github.com/Imbad0202/academic-research-skills).
|
|
@@ -0,0 +1,265 @@
|
|
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1
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---
|
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2
|
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name: "paper-plan"
|
|
3
|
+
description: "Generate a structured paper outline from review conclusions and experiment results. Use when user says \"写大纲\", \"paper outline\", \"plan the paper\", \"论文规划\", or wants to create a paper plan before writing."
|
|
4
|
+
---
|
|
5
|
+
|
|
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|
+
> Override for Codex users who want **Gemini**, not a second Codex agent, to act as the reviewer. Install this package **after** `skills/skills-codex/*`.
|
|
7
|
+
|
|
8
|
+
# Paper Plan: From Review Conclusions to Paper Outline
|
|
9
|
+
|
|
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|
+
> **Gemini overlay assurance:** `review_independence: cross-family` and `acceptance_status: accepted`.
|
|
11
|
+
|
|
12
|
+
Generate a structured, section-by-section paper outline from: **$ARGUMENTS**
|
|
13
|
+
|
|
14
|
+
## Constants
|
|
15
|
+
|
|
16
|
+
- **REVIEWER_MODEL = `gemini-review`** — Gemini reviewer invoked through the local `gemini-review` MCP bridge. Set `GEMINI_REVIEW_MODEL` if you need a specific Gemini model override.
|
|
17
|
+
- **TARGET_VENUE = `ICLR`** — Default venue. User can override (e.g., `/paper-plan "topic" — venue: NeurIPS`). Supported: `ICLR`, `NeurIPS`, `ICML`.
|
|
18
|
+
- **MAX_PAGES** — Main body page limit, measured from first page to end of Conclusion section (excluding references, appendix, and acknowledgements). ICLR=9, NeurIPS=9, ICML=8.
|
|
19
|
+
|
|
20
|
+
## Inputs
|
|
21
|
+
|
|
22
|
+
The skill expects one or more of these in the project directory:
|
|
23
|
+
|
|
24
|
+
1. **NARRATIVE_REPORT.md** or **STORY.md** — research narrative with claims and evidence
|
|
25
|
+
2. **review-stage/AUTO_REVIEW.md** — auto-review loop conclusions *(fall back to `./AUTO_REVIEW.md` if not found)*
|
|
26
|
+
3. **Experiment results** — JSON files in `figures/`, screen logs, tables
|
|
27
|
+
4. **idea-stage/IDEA_REPORT.md** — from idea-discovery pipeline (if applicable) *(fall back to `./IDEA_REPORT.md` if not found)*
|
|
28
|
+
|
|
29
|
+
If none exist, ask the user to describe the paper's contribution in 3-5 sentences.
|
|
30
|
+
|
|
31
|
+
## Workflow
|
|
32
|
+
|
|
33
|
+
### Step 1: Extract Claims and Evidence
|
|
34
|
+
|
|
35
|
+
Read all available narrative documents and extract:
|
|
36
|
+
|
|
37
|
+
1. **Core claims** (3-5 main contributions)
|
|
38
|
+
2. **Evidence** for each claim (which experiments, which metrics, which figures)
|
|
39
|
+
3. **Known weaknesses** (from reviewer feedback)
|
|
40
|
+
4. **Suggested framing** (from review conclusions)
|
|
41
|
+
|
|
42
|
+
Build a **Claims-Evidence Matrix**:
|
|
43
|
+
|
|
44
|
+
```markdown
|
|
45
|
+
| Claim | Evidence | Status | Section |
|
|
46
|
+
|-------|----------|--------|---------|
|
|
47
|
+
| [claim 1] | [exp A, metric B] | Supported | §3.2 |
|
|
48
|
+
| [claim 2] | [exp C] | Partially supported | §4.1 |
|
|
49
|
+
```
|
|
50
|
+
|
|
51
|
+
### Step 2: Determine Paper Type and Structure
|
|
52
|
+
|
|
53
|
+
Based on TARGET_VENUE and paper content, classify and select structure.
|
|
54
|
+
|
|
55
|
+
**IMPORTANT**: The section count is FLEXIBLE (5-8 sections). Choose what fits the content best. The templates below are starting points, not rigid constraints.
|
|
56
|
+
|
|
57
|
+
**Empirical/Diagnostic paper:**
|
|
58
|
+
```
|
|
59
|
+
1. Introduction (1.5 pages)
|
|
60
|
+
2. Related Work (1 page)
|
|
61
|
+
3. Method / Setup (1.5 pages)
|
|
62
|
+
4. Experiments (3 pages)
|
|
63
|
+
5. Analysis / Discussion (1 page)
|
|
64
|
+
6. Conclusion (0.5 pages)
|
|
65
|
+
```
|
|
66
|
+
|
|
67
|
+
**Theory + Experiments paper:**
|
|
68
|
+
```
|
|
69
|
+
1. Introduction (1.5 pages)
|
|
70
|
+
2. Related Work (1 page)
|
|
71
|
+
3. Preliminaries & Modeling (1.5 pages)
|
|
72
|
+
4. Experiments (1.5 pages)
|
|
73
|
+
5. Theory Part A (1.5 pages)
|
|
74
|
+
6. Theory Part B (1.5 pages)
|
|
75
|
+
7. Conclusion (0.5 pages)
|
|
76
|
+
— Total: 9 pages
|
|
77
|
+
```
|
|
78
|
+
Theory papers often need 7 sections (splitting theory into estimation + optimization, or setup + analysis). The total page budget MUST sum to MAX_PAGES.
|
|
79
|
+
|
|
80
|
+
Theory papers should:
|
|
81
|
+
- Include **proof sketch** locations (not just theorem statements)
|
|
82
|
+
- Plan a **comparison table** of prior theoretical bounds vs. this paper's bounds
|
|
83
|
+
- Identify which proofs go in appendix vs. main body
|
|
84
|
+
|
|
85
|
+
**Method paper:**
|
|
86
|
+
```
|
|
87
|
+
1. Introduction (1.5 pages)
|
|
88
|
+
2. Related Work (1 page)
|
|
89
|
+
3. Method (2 pages)
|
|
90
|
+
4. Experiments (2.5 pages)
|
|
91
|
+
5. Ablation / Analysis (1 page)
|
|
92
|
+
6. Conclusion (0.5 pages)
|
|
93
|
+
```
|
|
94
|
+
|
|
95
|
+
### Step 3: Section-by-Section Planning
|
|
96
|
+
|
|
97
|
+
For each section, specify:
|
|
98
|
+
|
|
99
|
+
```markdown
|
|
100
|
+
### §0 Abstract
|
|
101
|
+
- **One-sentence problem**: [what gap this paper addresses]
|
|
102
|
+
- **Approach**: [what we do, in one sentence]
|
|
103
|
+
- **Key result**: [most compelling quantitative finding]
|
|
104
|
+
- **Implication**: [why it matters]
|
|
105
|
+
- **Estimated length**: 150-250 words
|
|
106
|
+
- **Self-contained check**: can a reader understand this without the paper?
|
|
107
|
+
|
|
108
|
+
### §1 Introduction
|
|
109
|
+
- **Opening hook**: [1-2 sentences that motivate the problem]
|
|
110
|
+
- **Gap**: [what's missing in prior work]
|
|
111
|
+
- **Key questions**: [the research questions this paper answers]
|
|
112
|
+
- **Contributions**: [numbered list, matching Claims-Evidence Matrix]
|
|
113
|
+
- **Hero figure**: [describe what Figure 1 should show — MUST include clear comparison if applicable]
|
|
114
|
+
- **Estimated length**: 1.5 pages
|
|
115
|
+
- **Key citations**: [3-5 papers to cite here]
|
|
116
|
+
|
|
117
|
+
### §2 Related Work
|
|
118
|
+
- **Subtopics**: [2-4 categories of related work]
|
|
119
|
+
- **Positioning**: [how this paper differs from each category]
|
|
120
|
+
- **Minimum length**: 1 full page (at least 3-4 paragraphs with substantive synthesis)
|
|
121
|
+
- **Must NOT be just a list** — synthesize, compare, and position
|
|
122
|
+
|
|
123
|
+
### §3 Method / Setup / Preliminaries
|
|
124
|
+
- **Notation**: [key symbols and their meanings]
|
|
125
|
+
- **Problem formulation**: [formal setup]
|
|
126
|
+
- **Method description**: [algorithm, model, or experimental design]
|
|
127
|
+
- **Formal statements**: [theorems, propositions if applicable]
|
|
128
|
+
- **Proof sketch locations**: [which key steps appear here vs. appendix]
|
|
129
|
+
- **Estimated length**: 1.5-2 pages
|
|
130
|
+
|
|
131
|
+
### §4 Experiments / Main Results
|
|
132
|
+
- **Figures planned**:
|
|
133
|
+
- Fig 1: [description, type: bar/line/table/architecture, WHAT COMPARISON it shows]
|
|
134
|
+
- Fig 2: [description]
|
|
135
|
+
- Table 1: [what it shows, which methods/baselines compared]
|
|
136
|
+
- **Data source**: [which JSON files / experiment results]
|
|
137
|
+
|
|
138
|
+
### §5 Conclusion
|
|
139
|
+
- **Restatement**: [contributions rephrased, not copy-pasted from intro]
|
|
140
|
+
- **Limitations**: [honest assessment — reviewers value this]
|
|
141
|
+
- **Future work**: [1-2 concrete directions]
|
|
142
|
+
- **Estimated length**: 0.5 pages
|
|
143
|
+
```
|
|
144
|
+
|
|
145
|
+
### Step 4: Figure Plan
|
|
146
|
+
|
|
147
|
+
List every figure and table:
|
|
148
|
+
|
|
149
|
+
```markdown
|
|
150
|
+
## Figure Plan
|
|
151
|
+
|
|
152
|
+
| ID | Type | Description | Data Source | Priority |
|
|
153
|
+
|----|------|-------------|-------------|----------|
|
|
154
|
+
| Fig 1 | Hero/Architecture | System overview + comparison | manual | HIGH |
|
|
155
|
+
| Fig 2 | Line plot | Training curves comparison | figures/exp_A.json | HIGH |
|
|
156
|
+
| Fig 3 | Bar chart | Ablation results | figures/ablation.json | MEDIUM |
|
|
157
|
+
| Table 1 | Comparison table | Main results vs. baselines | figures/main_results.json | HIGH |
|
|
158
|
+
| Table 2 | Theory comparison | Prior bounds vs. ours | manual | HIGH (theory papers) |
|
|
159
|
+
```
|
|
160
|
+
|
|
161
|
+
**CRITICAL for Figure 1 / Hero Figure**: Describe in detail what the figure should contain, including:
|
|
162
|
+
- Which methods are being compared
|
|
163
|
+
- What the visual difference should demonstrate
|
|
164
|
+
- Caption draft that clearly states the comparison
|
|
165
|
+
|
|
166
|
+
### Step 5: Citation Scaffolding
|
|
167
|
+
|
|
168
|
+
For each section, list required citations:
|
|
169
|
+
|
|
170
|
+
```markdown
|
|
171
|
+
## Citation Plan
|
|
172
|
+
- §1 Intro: [paper1], [paper2], [paper3] (problem motivation)
|
|
173
|
+
- §2 Related: [paper4]-[paper10] (categorized by subtopic)
|
|
174
|
+
- §3 Method: [paper11] (baseline), [paper12] (technique we build on)
|
|
175
|
+
```
|
|
176
|
+
|
|
177
|
+
**Citation rules** (from claude-scholar + Imbad0202/academic-research-skills):
|
|
178
|
+
1. NEVER generate BibTeX from memory — always verify via search or existing .bib files
|
|
179
|
+
2. Every citation must be verified: correct authors, year, venue
|
|
180
|
+
3. Flag any citation you're unsure about with `[VERIFY]`
|
|
181
|
+
4. Prefer published versions over arXiv preprints when available
|
|
182
|
+
|
|
183
|
+
### Step 6: Cross-Review with REVIEWER_MODEL
|
|
184
|
+
|
|
185
|
+
Send the complete outline to Gemini review for feedback:
|
|
186
|
+
|
|
187
|
+
```
|
|
188
|
+
mcp__gemini-review__review_start:
|
|
189
|
+
prompt: |
|
|
190
|
+
Review this paper outline for a [VENUE] submission.
|
|
191
|
+
[full outline including Claims-Evidence Matrix]
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+
|
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Score 1-10 on:
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194
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+
1. Logical flow — does the story build naturally?
|
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195
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+
2. Claim-evidence alignment — every claim backed?
|
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196
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+
3. Missing experiments or analysis
|
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197
|
+
4. Positioning relative to prior work
|
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198
|
+
5. Page budget feasibility (MAX_PAGES = main body to Conclusion end, excluding refs/appendix)
|
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199
|
+
|
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200
|
+
For each weakness, suggest the MINIMUM fix.
|
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201
|
+
Be specific and actionable — "add X" not "consider more experiments".
|
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202
|
+
```
|
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203
|
+
|
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204
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+
After this start call, immediately save the returned `jobId` and poll `mcp__gemini-review__review_status` with a bounded `waitSeconds` until `done=true`. Treat the completed status payload's `response` as the reviewer output, and save the completed `threadId` for any follow-up round.
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205
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+
|
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206
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Apply feedback before finalizing.
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207
|
+
|
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208
|
+
### Step 7: Output
|
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|
+
|
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Save the final outline to `PAPER_PLAN.md` in the project root:
|
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|
+
|
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|
+
```markdown
|
|
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|
+
# Paper Plan
|
|
214
|
+
|
|
215
|
+
**Title**: [working title]
|
|
216
|
+
**Venue**: [target venue]
|
|
217
|
+
**Type**: [empirical/theory/method]
|
|
218
|
+
**Date**: [today]
|
|
219
|
+
**Page budget**: [MAX_PAGES] pages (main body to Conclusion end, excluding references & appendix)
|
|
220
|
+
**Section count**: [N] (must match the number of section files that will be created)
|
|
221
|
+
|
|
222
|
+
## Claims-Evidence Matrix
|
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223
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+
[from Step 1]
|
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224
|
+
|
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225
|
+
## Structure
|
|
226
|
+
[from Step 2-3, section by section]
|
|
227
|
+
|
|
228
|
+
## Figure Plan
|
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229
|
+
[from Step 4, with detailed hero figure description]
|
|
230
|
+
|
|
231
|
+
## Citation Plan
|
|
232
|
+
[from Step 5]
|
|
233
|
+
|
|
234
|
+
## Reviewer Feedback
|
|
235
|
+
[from Step 6, summarized]
|
|
236
|
+
|
|
237
|
+
## Next Steps
|
|
238
|
+
- [ ] /paper-figure to generate all figures
|
|
239
|
+
- [ ] /paper-write to draft LaTeX
|
|
240
|
+
- [ ] /paper-compile to build PDF
|
|
241
|
+
```
|
|
242
|
+
|
|
243
|
+
## Output Protocols
|
|
244
|
+
|
|
245
|
+
> Follow these shared protocols for all output files:
|
|
246
|
+
> - **[Output Versioning Protocol](../../shared-references/output-versioning.md)** — write timestamped file first, then copy to fixed name
|
|
247
|
+
> - **[Output Manifest Protocol](../../shared-references/output-manifest.md)** — log every output to MANIFEST.md
|
|
248
|
+
> - **[Output Language Protocol](../../shared-references/output-language.md)** — respect the project's language setting
|
|
249
|
+
|
|
250
|
+
## Key Rules
|
|
251
|
+
|
|
252
|
+
- **Large file handling**: If the Write tool fails due to file size, immediately retry using Bash (`cat << 'EOF' > file`) to write in chunks. Do NOT ask the user for permission — just do it silently.
|
|
253
|
+
|
|
254
|
+
- **Do NOT generate author information** — leave author block as placeholder or anonymous
|
|
255
|
+
- **Be honest about evidence gaps** — mark claims as "needs experiment" rather than overclaiming
|
|
256
|
+
- **Page budget is hard** — if content exceeds MAX_PAGES, suggest what to move to appendix
|
|
257
|
+
- **MAX_PAGES counts main body only** — from first page to end of Conclusion. References and appendix are NOT counted.
|
|
258
|
+
- **Venue-specific norms** — all three venues (ICLR/NeurIPS/ICML) use `natbib` (`\citep`/`\citet`)
|
|
259
|
+
- **Claims-Evidence Matrix is the backbone** — every claim must map to evidence, every experiment must support a claim
|
|
260
|
+
- **Figures need detailed descriptions** — especially the hero figure, which must clearly specify comparisons and visual expectations
|
|
261
|
+
- **Section count is flexible** — 5-8 sections depending on paper type. Don't force content into a rigid 5-section template.
|
|
262
|
+
|
|
263
|
+
## Acknowledgements
|
|
264
|
+
|
|
265
|
+
Outline methodology inspired by [Research-Paper-Writing-Skills](https://github.com/Master-cai/Research-Paper-Writing-Skills) (claim-evidence mapping), [claude-scholar](https://github.com/Galaxy-Dawn/claude-scholar) (citation verification), and [Imbad0202/academic-research-skills](https://github.com/Imbad0202/academic-research-skills) (claim verification protocol).
|
|
@@ -0,0 +1,102 @@
|
|
|
1
|
+
---
|
|
2
|
+
name: paper-poster-html
|
|
3
|
+
description: "DEFAULT poster pipeline — build an academic conference poster (ICML/NeurIPS/ICLR/CVPR/...) as a single HTML/CSS file with measurement-driven hard gates, real paper figures, a two-hue design-token system, and print-ready PDF via headless Chromium. Use when the user says \"做海报\", \"poster\", \"conference poster\", \"paper poster\", or asks to design/redo a research poster."
|
|
4
|
+
argument-hint: "[paper-dir-or-pdf] [— venue: ICLR, canvas: 185x90cm landscape, venue-colors: true]"
|
|
5
|
+
allowed-tools: Bash(*), Read, Write, Edit, Grep, Glob, mcp__gemini-review__review, mcp__gemini-review__review_start, mcp__gemini-review__review_reply_start, mcp__gemini-review__review_status
|
|
6
|
+
---
|
|
7
|
+
|
|
8
|
+
> Override for Codex users who want **Gemini**, not a second Codex/Codex-MCP reviewer, to act as the reviewer. Install this package **after** `skills/skills-codex/*`.
|
|
9
|
+
|
|
10
|
+
# Paper Poster (HTML): measurement-gated poster generation
|
|
11
|
+
|
|
12
|
+
> **Gemini overlay assurance:** `review_independence: cross-family` and `acceptance_status: accepted`.
|
|
13
|
+
|
|
14
|
+
One HTML file styled for an exact print canvas (`@page { size: W H }`), rendered to PDF
|
|
15
|
+
via Playwright print emulation. **Iterate by measuring, not eyeballing** — the screen
|
|
16
|
+
preview lies; only print emulation at the correct viewport tells the truth. Core gate
|
|
17
|
+
machinery is adapted from [posterly](https://github.com/Chenruishuo/posterly) (MIT, ©
|
|
18
|
+
2026 Ruishuo Chen — see `NOTICE.md` and `LICENSES/posterly-MIT.txt` in the mainline
|
|
19
|
+
skill directory); ARIS adds style discipline gates, figure-provenance gates, the
|
|
20
|
+
cross-model review loop, and the anti-patch-loop fix vocabulary.
|
|
21
|
+
|
|
22
|
+
This overlay is identical to `skills/skills-codex/paper-poster-html/` except that the
|
|
23
|
+
two cross-model review calls go to **Gemini** through the local `gemini-review` MCP
|
|
24
|
+
bridge instead of a spawned GPT reviewer agent. Follow the base mirror for everything
|
|
25
|
+
not restated here (phases, gates, fix vocabulary, figure provenance, output contract).
|
|
26
|
+
|
|
27
|
+
## Reviewer constants (overlay)
|
|
28
|
+
|
|
29
|
+
- **REVIEWER_MODEL = `gemini-review`** — Gemini invoked through the local
|
|
30
|
+
`gemini-review` MCP bridge.
|
|
31
|
+
- **Fresh review job per call** — start each review with
|
|
32
|
+
`mcp__gemini-review__review_start`; never reuse a prior review job across review
|
|
33
|
+
boundaries. Save the returned `jobId`, poll `mcp__gemini-review__review_status` with
|
|
34
|
+
a bounded `waitSeconds` until `done=true`, and treat the completed payload's
|
|
35
|
+
`response` as the reviewer output.
|
|
36
|
+
- The Gemini bridge cannot read your local files — paste the relevant content into the
|
|
37
|
+
prompt, and pass rendered posters via `imagePaths`.
|
|
38
|
+
- If the `gemini-review` bridge is unavailable, stop and tell the user what to
|
|
39
|
+
configure. Do not silently degrade the cross-model reviews into self-review.
|
|
40
|
+
|
|
41
|
+
## Phase 1 step 2 — Cross-model content audit (Gemini)
|
|
42
|
+
|
|
43
|
+
```text
|
|
44
|
+
mcp__gemini-review__review_start:
|
|
45
|
+
prompt: |
|
|
46
|
+
Audit a conference-poster content plan against its source paper.
|
|
47
|
+
|
|
48
|
+
## Poster content plan
|
|
49
|
+
[PASTE poster_html/POSTER_CONTENT_PLAN.md]
|
|
50
|
+
|
|
51
|
+
## Paper source (relevant sections)
|
|
52
|
+
[PASTE the paper sections backing the plan's claims — abstract, headline
|
|
53
|
+
results tables, method equations, theorem statements]
|
|
54
|
+
|
|
55
|
+
For EVERY claim, number, equation, and attribution in the plan, output one row:
|
|
56
|
+
| claim on poster | paper location | paper says (verbatim) | match? |
|
|
57
|
+
with match ∈ {OK, NUMERIC-MISMATCH, OVERCLAIM, MISSING-PRECONDITION,
|
|
58
|
+
NOT-IN-PAPER, SCOPE-NARROWED}. End with a count per category.
|
|
59
|
+
```
|
|
60
|
+
|
|
61
|
+
Poll `review_status` until `done=true`; save the response to
|
|
62
|
+
`poster_html/CLAIM_EVIDENCE.md`. Fix every non-OK row or record it as a
|
|
63
|
+
user-acknowledged tradeoff.
|
|
64
|
+
|
|
65
|
+
## Phase 6 — Final review (Gemini, multimodal)
|
|
66
|
+
|
|
67
|
+
All hard gates PASS + polish warnings zero-or-waived + executor visual score ≥ 9
|
|
68
|
+
first. Then:
|
|
69
|
+
|
|
70
|
+
```text
|
|
71
|
+
mcp__gemini-review__review_start:
|
|
72
|
+
imagePaths: ["poster_html/poster_preview.png"]
|
|
73
|
+
prompt: |
|
|
74
|
+
Final print-readiness audit of a conference poster (image attached).
|
|
75
|
+
|
|
76
|
+
## Final poster text content
|
|
77
|
+
[PASTE the text content extracted from poster_html/poster.html]
|
|
78
|
+
|
|
79
|
+
## Gate report summary
|
|
80
|
+
[PASTE the overall/hard_failures/warnings fields of poster_html/GATE_REPORT.json]
|
|
81
|
+
|
|
82
|
+
## Claim→evidence audit
|
|
83
|
+
[PASTE poster_html/CLAIM_EVIDENCE.md]
|
|
84
|
+
|
|
85
|
+
Check: (1) fidelity & overclaims RE-CHECKED on the final text (polish introduces
|
|
86
|
+
new claims), (2) residue (\ref{, TODO, raw < in math, missing images, remote
|
|
87
|
+
URLs), (3) visual rhetoric (headline numbers prominent, banner readable from
|
|
88
|
+
2 m, two-hue discipline, real paper figures central and inside their cards),
|
|
89
|
+
(4) gate-log coherence.
|
|
90
|
+
Verdict: PRINT-READY or NEEDS-FIX with a numbered, severity-ordered issue list.
|
|
91
|
+
```
|
|
92
|
+
|
|
93
|
+
Poll `mcp__gemini-review__review_status` with a bounded `waitSeconds` until `done=true`;
|
|
94
|
+
treat the completed payload's `response` as the reviewer verdict.
|
|
95
|
+
|
|
96
|
+
The reviewer recommends; it does not edit. Any fix → back through Phase 4/5 gates —
|
|
97
|
+
never straight to re-review.
|
|
98
|
+
|
|
99
|
+
## Review tracing
|
|
100
|
+
|
|
101
|
+
Save both review jobs' raw responses per `../../shared-references/review-tracing.md` to
|
|
102
|
+
`.aris/traces/paper-poster-html/<date>_run<NN>/`.
|