diff-grok 1.2.0 → 1.3.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (624) hide show
  1. package/README.MD +56 -8
  2. package/dist/index.d.ts +6 -0
  3. package/{index.js → dist/index.js} +1 -0
  4. package/dist/index.js.map +1 -0
  5. package/dist/src/examples/basic-use.d.ts +10 -0
  6. package/dist/src/examples/basic-use.js.map +1 -0
  7. package/dist/src/examples/check-methods.d.ts +1 -0
  8. package/dist/src/examples/check-methods.js.map +1 -0
  9. package/dist/src/examples/corr-probs.d.ts +15 -0
  10. package/{src → dist/src}/examples/corr-probs.js +2 -2
  11. package/dist/src/examples/corr-probs.js.map +1 -0
  12. package/dist/src/examples/cyclic-model.d.ts +6 -0
  13. package/dist/src/examples/cyclic-model.js.map +1 -0
  14. package/dist/src/examples/e5.d.ts +15 -0
  15. package/dist/src/examples/e5.js.map +1 -0
  16. package/dist/src/examples/hires.d.ts +15 -0
  17. package/dist/src/examples/hires.js.map +1 -0
  18. package/dist/src/examples/index.d.ts +22 -0
  19. package/dist/src/examples/index.js.map +1 -0
  20. package/dist/src/examples/model-updates.d.ts +6 -0
  21. package/dist/src/examples/model-updates.js.map +1 -0
  22. package/dist/src/examples/orego.d.ts +15 -0
  23. package/dist/src/examples/orego.js.map +1 -0
  24. package/dist/src/examples/pipeline-use.d.ts +6 -0
  25. package/dist/src/examples/pipeline-use.js.map +1 -0
  26. package/dist/src/examples/pollution.d.ts +15 -0
  27. package/dist/src/examples/pollution.js.map +1 -0
  28. package/{src/examples/print-benchmark.ts → dist/src/examples/print-benchmark.d.ts} +8 -58
  29. package/dist/src/examples/print-benchmark.js.map +1 -0
  30. package/dist/src/examples/robertson.d.ts +15 -0
  31. package/{docs/media → dist/src/examples}/robertson.js +2 -2
  32. package/dist/src/examples/robertson.js.map +1 -0
  33. package/dist/src/examples/scripting.d.ts +1 -0
  34. package/dist/src/examples/scripting.js.map +1 -0
  35. package/dist/src/examples/vdpol.d.ts +15 -0
  36. package/dist/src/examples/vdpol.js.map +1 -0
  37. package/dist/src/latex-export/examples/advanced-to-latex.d.ts +2 -0
  38. package/dist/src/latex-export/examples/advanced-to-latex.js +41 -0
  39. package/dist/src/latex-export/examples/advanced-to-latex.js.map +1 -0
  40. package/dist/src/latex-export/examples/basic-to-latex.d.ts +2 -0
  41. package/dist/src/latex-export/examples/basic-to-latex.js +17 -0
  42. package/dist/src/latex-export/examples/basic-to-latex.js.map +1 -0
  43. package/dist/src/latex-export/examples/bioreactor-to-latex-selective.d.ts +2 -0
  44. package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js +145 -0
  45. package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js.map +1 -0
  46. package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.d.ts +2 -0
  47. package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js +41 -0
  48. package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js.map +1 -0
  49. package/dist/src/latex-export/examples/energy-n-control-to-markdown.d.ts +2 -0
  50. package/dist/src/latex-export/examples/energy-n-control-to-markdown.js +58 -0
  51. package/dist/src/latex-export/examples/energy-n-control-to-markdown.js.map +1 -0
  52. package/dist/src/latex-export/examples/extended-to-markdown.d.ts +2 -0
  53. package/dist/src/latex-export/examples/extended-to-markdown.js +37 -0
  54. package/dist/src/latex-export/examples/extended-to-markdown.js.map +1 -0
  55. package/dist/src/latex-export/examples/fermentation-to-latex.d.ts +2 -0
  56. package/dist/src/latex-export/examples/fermentation-to-latex.js +32 -0
  57. package/dist/src/latex-export/examples/fermentation-to-latex.js.map +1 -0
  58. package/dist/src/latex-export/examples/ga-production-to-markdown.d.ts +2 -0
  59. package/dist/src/latex-export/examples/ga-production-to-markdown.js +58 -0
  60. package/dist/src/latex-export/examples/ga-production-to-markdown.js.map +1 -0
  61. package/dist/src/latex-export/examples/nimotuzumab-to-latex.d.ts +2 -0
  62. package/dist/src/latex-export/examples/nimotuzumab-to-latex.js +53 -0
  63. package/dist/src/latex-export/examples/nimotuzumab-to-latex.js.map +1 -0
  64. package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.d.ts +2 -0
  65. package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js +50 -0
  66. package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js.map +1 -0
  67. package/dist/src/latex-export/examples/pk-to-markdown.d.ts +2 -0
  68. package/dist/src/latex-export/examples/pk-to-markdown.js +35 -0
  69. package/dist/src/latex-export/examples/pk-to-markdown.js.map +1 -0
  70. package/dist/src/latex-export/examples/pollution-to-latex.d.ts +2 -0
  71. package/dist/src/latex-export/examples/pollution-to-latex.js +141 -0
  72. package/dist/src/latex-export/examples/pollution-to-latex.js.map +1 -0
  73. package/dist/src/latex-export/examples/robertson-to-latex-no-meta.d.ts +2 -0
  74. package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js +25 -0
  75. package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js.map +1 -0
  76. package/dist/src/latex-export/generator/bracket-manager.d.ts +19 -0
  77. package/dist/src/latex-export/generator/bracket-manager.js +58 -0
  78. package/dist/src/latex-export/generator/bracket-manager.js.map +1 -0
  79. package/dist/src/latex-export/generator/document-builder.d.ts +13 -0
  80. package/dist/src/latex-export/generator/document-builder.js +433 -0
  81. package/dist/src/latex-export/generator/document-builder.js.map +1 -0
  82. package/dist/src/latex-export/generator/latex-generator.d.ts +26 -0
  83. package/dist/src/latex-export/generator/latex-generator.js +180 -0
  84. package/dist/src/latex-export/generator/latex-generator.js.map +1 -0
  85. package/dist/src/latex-export/index.d.ts +8 -0
  86. package/dist/src/latex-export/index.js +25 -0
  87. package/dist/src/latex-export/index.js.map +1 -0
  88. package/dist/src/latex-export/output/md-formatter.d.ts +16 -0
  89. package/dist/src/latex-export/output/md-formatter.js +27 -0
  90. package/dist/src/latex-export/output/md-formatter.js.map +1 -0
  91. package/dist/src/latex-export/output/tex-formatter.d.ts +5 -0
  92. package/dist/src/latex-export/output/tex-formatter.js +20 -0
  93. package/dist/src/latex-export/output/tex-formatter.js.map +1 -0
  94. package/dist/src/latex-export/parser/ast-parser.d.ts +7 -0
  95. package/dist/src/latex-export/parser/ast-parser.js +153 -0
  96. package/dist/src/latex-export/parser/ast-parser.js.map +1 -0
  97. package/dist/src/latex-export/parser/ivp-parser.d.ts +6 -0
  98. package/dist/src/latex-export/parser/ivp-parser.js +219 -0
  99. package/dist/src/latex-export/parser/ivp-parser.js.map +1 -0
  100. package/dist/src/latex-export/parser/line-joiner.d.ts +25 -0
  101. package/dist/src/latex-export/parser/line-joiner.js +80 -0
  102. package/dist/src/latex-export/parser/line-joiner.js.map +1 -0
  103. package/dist/src/latex-export/parser/tokenizer.d.ts +7 -0
  104. package/dist/src/latex-export/parser/tokenizer.js +143 -0
  105. package/dist/src/latex-export/parser/tokenizer.js.map +1 -0
  106. package/dist/src/latex-export/transformer/functions.d.ts +12 -0
  107. package/dist/src/latex-export/transformer/functions.js +47 -0
  108. package/dist/src/latex-export/transformer/functions.js.map +1 -0
  109. package/dist/src/latex-export/transformer/identifier.d.ts +23 -0
  110. package/dist/src/latex-export/transformer/identifier.js +194 -0
  111. package/dist/src/latex-export/transformer/identifier.js.map +1 -0
  112. package/dist/src/latex-export/transformer/operators.d.ts +9 -0
  113. package/dist/src/latex-export/transformer/operators.js +41 -0
  114. package/dist/src/latex-export/transformer/operators.js.map +1 -0
  115. package/dist/src/latex-export/types.d.ts +122 -0
  116. package/dist/src/latex-export/types.js +10 -0
  117. package/dist/src/latex-export/types.js.map +1 -0
  118. package/{src/pipeline/basic-pipeline-creator.ts → dist/src/pipeline/basic-pipeline-creator.d.ts} +11 -28
  119. package/dist/src/pipeline/basic-pipeline-creator.js.map +1 -0
  120. package/dist/src/pipeline/constants.d.ts +14 -0
  121. package/dist/src/pipeline/constants.js.map +1 -0
  122. package/dist/src/pipeline/index.d.ts +7 -0
  123. package/dist/src/pipeline/index.js.map +1 -0
  124. package/dist/src/pipeline/input.d.ts +3 -0
  125. package/dist/src/pipeline/input.js.map +1 -0
  126. package/dist/src/pipeline/loops-pipeline-creator.d.ts +124 -0
  127. package/dist/src/pipeline/loops-pipeline-creator.js.map +1 -0
  128. package/dist/src/pipeline/output.d.ts +10 -0
  129. package/{src → dist/src}/pipeline/output.js +1 -1
  130. package/dist/src/pipeline/output.js.map +1 -0
  131. package/dist/src/pipeline/pipeline-creator.d.ts +12 -0
  132. package/{src → dist/src}/pipeline/pipeline-creator.js +2 -0
  133. package/dist/src/pipeline/pipeline-creator.js.map +1 -0
  134. package/{src/pipeline/pipeline.ts → dist/src/pipeline/pipeline.d.ts} +10 -97
  135. package/dist/src/pipeline/pipeline.js.map +1 -0
  136. package/{src/pipeline/updates-pipeline-creator.ts → dist/src/pipeline/updates-pipeline-creator.d.ts} +15 -131
  137. package/dist/src/pipeline/updates-pipeline-creator.js.map +1 -0
  138. package/dist/src/scripting-tools/constants.d.ts +59 -0
  139. package/dist/src/scripting-tools/constants.js.map +1 -0
  140. package/dist/src/scripting-tools/index.d.ts +3 -0
  141. package/dist/src/scripting-tools/index.js.map +1 -0
  142. package/dist/src/scripting-tools/model-error.d.ts +10 -0
  143. package/{src → dist/src}/scripting-tools/model-error.js +2 -1
  144. package/dist/src/scripting-tools/model-error.js.map +1 -0
  145. package/dist/src/scripting-tools/scripting-tools.d.ts +277 -0
  146. package/{src → dist/src}/scripting-tools/scripting-tools.js +2 -4
  147. package/dist/src/scripting-tools/scripting-tools.js.map +1 -0
  148. package/dist/src/solver-tools/ab4-method.d.ts +46 -0
  149. package/{src → dist/src}/solver-tools/ab4-method.js +3 -3
  150. package/dist/src/solver-tools/ab4-method.js.map +1 -0
  151. package/dist/src/solver-tools/ab5-method.d.ts +46 -0
  152. package/{src → dist/src}/solver-tools/ab5-method.js +3 -3
  153. package/dist/src/solver-tools/ab5-method.js.map +1 -0
  154. package/dist/src/solver-tools/callbacks/callback-base.d.ts +8 -0
  155. package/dist/src/solver-tools/callbacks/callback-base.js.map +1 -0
  156. package/dist/src/solver-tools/callbacks/callback-tools.d.ts +6 -0
  157. package/dist/src/solver-tools/callbacks/callback-tools.js.map +1 -0
  158. package/dist/src/solver-tools/callbacks/iter-checker-callback.d.ts +12 -0
  159. package/{src → dist/src}/solver-tools/callbacks/iter-checker-callback.js +2 -0
  160. package/dist/src/solver-tools/callbacks/iter-checker-callback.js.map +1 -0
  161. package/dist/src/solver-tools/callbacks/time-checker-callback.d.ts +12 -0
  162. package/{src → dist/src}/solver-tools/callbacks/time-checker-callback.js +2 -2
  163. package/dist/src/solver-tools/callbacks/time-checker-callback.js.map +1 -0
  164. package/dist/src/solver-tools/cvode/common.d.ts +395 -0
  165. package/dist/src/solver-tools/cvode/common.js +483 -0
  166. package/dist/src/solver-tools/cvode/common.js.map +1 -0
  167. package/dist/src/solver-tools/cvode/cvode.d.ts +23 -0
  168. package/dist/src/solver-tools/cvode/cvode.js.map +1 -0
  169. package/dist/src/solver-tools/cvode/cvode_adams.d.ts +22 -0
  170. package/dist/src/solver-tools/cvode/cvode_adams.js.map +1 -0
  171. package/dist/src/solver-tools/cvode/cvode_bdf.d.ts +37 -0
  172. package/dist/src/solver-tools/cvode/cvode_bdf.js.map +1 -0
  173. package/dist/src/solver-tools/cvode/cvode_class.d.ts +116 -0
  174. package/{src → dist/src}/solver-tools/cvode/cvode_class.js +9 -4
  175. package/dist/src/solver-tools/cvode/cvode_class.js.map +1 -0
  176. package/dist/src/solver-tools/cvode/cvode_hin.d.ts +24 -0
  177. package/dist/src/solver-tools/cvode/cvode_hin.js.map +1 -0
  178. package/dist/src/solver-tools/cvode/cvode_io.d.ts +98 -0
  179. package/{src → dist/src}/solver-tools/cvode/cvode_io.js +1 -2
  180. package/dist/src/solver-tools/cvode/cvode_io.js.map +1 -0
  181. package/dist/src/solver-tools/cvode/cvode_ls.d.ts +23 -0
  182. package/dist/src/solver-tools/cvode/cvode_ls.js.map +1 -0
  183. package/dist/src/solver-tools/cvode/cvode_nls.d.ts +25 -0
  184. package/dist/src/solver-tools/cvode/cvode_nls.js.map +1 -0
  185. package/dist/src/solver-tools/cvode/cvode_root.d.ts +64 -0
  186. package/dist/src/solver-tools/cvode/cvode_root.js.map +1 -0
  187. package/dist/src/solver-tools/cvode/dense_linalg.d.ts +50 -0
  188. package/dist/src/solver-tools/cvode/dense_linalg.js.map +1 -0
  189. package/dist/src/solver-tools/cvode/index.d.ts +24 -0
  190. package/dist/src/solver-tools/cvode/index.js.map +1 -0
  191. package/dist/src/solver-tools/cvode-method.d.ts +47 -0
  192. package/dist/src/solver-tools/cvode-method.js.map +1 -0
  193. package/dist/src/solver-tools/index.d.ts +16 -0
  194. package/dist/src/solver-tools/index.js.map +1 -0
  195. package/dist/src/solver-tools/lin-alg-tools.d.ts +6 -0
  196. package/dist/src/solver-tools/lin-alg-tools.js.map +1 -0
  197. package/dist/src/solver-tools/lsoda/blas.d.ts +59 -0
  198. package/dist/src/solver-tools/lsoda/blas.js.map +1 -0
  199. package/{src/solver-tools/lsoda/index.ts → dist/src/solver-tools/lsoda/cfode.d.ts} +7 -6
  200. package/dist/src/solver-tools/lsoda/cfode.js.map +1 -0
  201. package/dist/src/solver-tools/lsoda/common.d.ts +85 -0
  202. package/dist/src/solver-tools/lsoda/common.js +96 -0
  203. package/dist/src/solver-tools/lsoda/common.js.map +1 -0
  204. package/{src/solver-tools/lsoda/corfailure.ts → dist/src/solver-tools/lsoda/corfailure.d.ts} +2 -26
  205. package/dist/src/solver-tools/lsoda/corfailure.js.map +1 -0
  206. package/dist/src/solver-tools/lsoda/correction.d.ts +23 -0
  207. package/dist/src/solver-tools/lsoda/correction.js.map +1 -0
  208. package/dist/src/solver-tools/lsoda/dense.d.ts +47 -0
  209. package/{src → dist/src}/solver-tools/lsoda/dense.js +2 -0
  210. package/dist/src/solver-tools/lsoda/dense.js.map +1 -0
  211. package/dist/src/solver-tools/lsoda/index.d.ts +16 -0
  212. package/dist/src/solver-tools/lsoda/index.js.map +1 -0
  213. package/dist/src/solver-tools/lsoda/intdy.d.ts +19 -0
  214. package/dist/src/solver-tools/lsoda/intdy.js.map +1 -0
  215. package/dist/src/solver-tools/lsoda/lsoda.d.ts +66 -0
  216. package/{src → dist/src}/solver-tools/lsoda/lsoda.js +13 -5
  217. package/dist/src/solver-tools/lsoda/lsoda.js.map +1 -0
  218. package/dist/src/solver-tools/lsoda/methodswitch.d.ts +21 -0
  219. package/dist/src/solver-tools/lsoda/methodswitch.js.map +1 -0
  220. package/dist/src/solver-tools/lsoda/orderswitch.d.ts +21 -0
  221. package/dist/src/solver-tools/lsoda/orderswitch.js.map +1 -0
  222. package/dist/src/solver-tools/lsoda/prja.d.ts +18 -0
  223. package/dist/src/solver-tools/lsoda/prja.js.map +1 -0
  224. package/dist/src/solver-tools/lsoda/scaleh.d.ts +16 -0
  225. package/dist/src/solver-tools/lsoda/scaleh.js.map +1 -0
  226. package/{src/solver-tools/lsoda/solsy.ts → dist/src/solver-tools/lsoda/solsy.d.ts} +2 -15
  227. package/dist/src/solver-tools/lsoda/solsy.js.map +1 -0
  228. package/dist/src/solver-tools/lsoda/stoda.d.ts +19 -0
  229. package/dist/src/solver-tools/lsoda/stoda.js.map +1 -0
  230. package/dist/src/solver-tools/lsoda-method.d.ts +46 -0
  231. package/dist/src/solver-tools/lsoda-method.js.map +1 -0
  232. package/dist/src/solver-tools/mrt-method.d.ts +47 -0
  233. package/{src → dist/src}/solver-tools/mrt-method.js +2 -2
  234. package/dist/src/solver-tools/mrt-method.js.map +1 -0
  235. package/dist/src/solver-tools/rk3-method.d.ts +46 -0
  236. package/{src → dist/src}/solver-tools/rk3-method.js +2 -2
  237. package/dist/src/solver-tools/rk3-method.js.map +1 -0
  238. package/dist/src/solver-tools/rk4-method.d.ts +46 -0
  239. package/{src → dist/src}/solver-tools/rk4-method.js +2 -2
  240. package/dist/src/solver-tools/rk4-method.js.map +1 -0
  241. package/dist/src/solver-tools/rkdp-method.d.ts +46 -0
  242. package/{src → dist/src}/solver-tools/rkdp-method.js +2 -2
  243. package/dist/src/solver-tools/rkdp-method.js.map +1 -0
  244. package/dist/src/solver-tools/ros34prw-method.d.ts +46 -0
  245. package/{src → dist/src}/solver-tools/ros34prw-method.js +2 -2
  246. package/dist/src/solver-tools/ros34prw-method.js.map +1 -0
  247. package/dist/src/solver-tools/ros3prw-method.d.ts +46 -0
  248. package/{src → dist/src}/solver-tools/ros3prw-method.js +2 -2
  249. package/dist/src/solver-tools/ros3prw-method.js.map +1 -0
  250. package/{src/solver-tools/solver-defs.ts → dist/src/solver-tools/solver-defs.d.ts} +45 -85
  251. package/dist/src/solver-tools/solver-defs.js.map +1 -0
  252. package/dist/src/worker-tools/index.d.ts +2 -0
  253. package/dist/src/worker-tools/index.js.map +1 -0
  254. package/{src/worker-tools/scripting.ts → dist/src/worker-tools/scripting.d.ts} +9 -91
  255. package/dist/src/worker-tools/scripting.js.map +1 -0
  256. package/dist/src/worker-tools/solving.d.ts +7 -0
  257. package/dist/src/worker-tools/solving.js.map +1 -0
  258. package/package.json +10 -11
  259. package/.claude/settings.local.json +0 -11
  260. package/.claude/skills/license-updater/SKILL.md +0 -149
  261. package/.claude/skills/license-updater/references/compatibility.md +0 -68
  262. package/.claude/skills/license-updater/references/templates.md +0 -151
  263. package/.claude/skills/license-updater/scripts/generate_license_files.py +0 -467
  264. package/.eslintrc.json +0 -45
  265. package/.github/ISSUE_TEMPLATE/bug_report.md +0 -29
  266. package/.github/ISSUE_TEMPLATE/feature_request.md +0 -20
  267. package/.github/PULL_REQUEST_TEMPLATE.md +0 -22
  268. package/.github/scripts/bump-js-api-version.sh +0 -106
  269. package/.github/scripts/check-output.sh +0 -20
  270. package/.github/scripts/iac-cfn-deploy.sh +0 -90
  271. package/.github/scripts/slack_api_request.sh +0 -65
  272. package/.github/scripts/test_package.sh +0 -270
  273. package/.github/workflows/deploy-docs.yml +0 -15
  274. package/.github/workflows/libraries.yaml +0 -305
  275. package/.github/workflows/test.yaml +0 -19
  276. package/CLAUDE.md +0 -104
  277. package/CONTRIBUTING.md +0 -74
  278. package/THIRD_PARTY_LICENSES +0 -135
  279. package/docs/.nojekyll +0 -1
  280. package/docs/assets/hierarchy.js +0 -1
  281. package/docs/assets/highlight.css +0 -99
  282. package/docs/assets/icons.js +0 -18
  283. package/docs/assets/icons.svg +0 -1
  284. package/docs/assets/main.js +0 -60
  285. package/docs/assets/navigation.js +0 -1
  286. package/docs/assets/search.js +0 -1
  287. package/docs/assets/style.css +0 -1633
  288. package/docs/classes/BasicModelPipelineCreator.html +0 -10
  289. package/docs/classes/Callback.html +0 -7
  290. package/docs/classes/CyclicModelPipelineCreator.html +0 -10
  291. package/docs/classes/IterCheckerCallback.html +0 -8
  292. package/docs/classes/PipelineCreator.html +0 -6
  293. package/docs/classes/TimeCheckerCallback.html +0 -8
  294. package/docs/classes/UpdatesModelPipelineCreator.html +0 -10
  295. package/docs/functions/ab4.html +0 -8
  296. package/docs/functions/ab5.html +0 -8
  297. package/docs/functions/applyPipeline.html +0 -9
  298. package/docs/functions/getCallback.html +0 -3
  299. package/docs/functions/getIVP.html +0 -6
  300. package/docs/functions/getInputVector.html +0 -2
  301. package/docs/functions/getIvp2WebWorker.html +0 -6
  302. package/docs/functions/getJScode.html +0 -6
  303. package/docs/functions/getOutputNames.html +0 -4
  304. package/docs/functions/getPipelineCreator.html +0 -7
  305. package/docs/functions/lsoda.html +0 -8
  306. package/docs/functions/mrt.html +0 -11
  307. package/docs/functions/printE5.html +0 -76
  308. package/docs/functions/printHires.html +0 -76
  309. package/docs/functions/printOrego.html +0 -66
  310. package/docs/functions/printPollution.html +0 -163
  311. package/docs/functions/printRobertson.html +0 -60
  312. package/docs/functions/printVdpol.html +0 -66
  313. package/docs/functions/rk3.html +0 -8
  314. package/docs/functions/rk4.html +0 -8
  315. package/docs/functions/rkdp.html +0 -8
  316. package/docs/functions/ros34prw.html +0 -8
  317. package/docs/functions/ros3prw.html +0 -8
  318. package/docs/functions/solveIvp.html +0 -5
  319. package/docs/hierarchy.html +0 -1
  320. package/docs/index.html +0 -768
  321. package/docs/media/CONTRIBUTING.md +0 -74
  322. package/docs/media/E5.png +0 -0
  323. package/docs/media/HIRES.png +0 -0
  324. package/docs/media/OREGO.png +0 -0
  325. package/docs/media/POLL-full.png +0 -0
  326. package/docs/media/POLL.png +0 -0
  327. package/docs/media/ROBER.png +0 -0
  328. package/docs/media/VDP0L.png +0 -0
  329. package/docs/media/VDPOL.png +0 -0
  330. package/docs/media/acid-prod.gif +0 -0
  331. package/docs/media/basic-use.js.map +0 -1
  332. package/docs/media/basic-use.ts +0 -44
  333. package/docs/media/check-methods.js +0 -59
  334. package/docs/media/check-methods.js.map +0 -1
  335. package/docs/media/check-methods.ts +0 -81
  336. package/docs/media/corr-probs.js +0 -132
  337. package/docs/media/corr-probs.js.map +0 -1
  338. package/docs/media/corr-probs.ts +0 -155
  339. package/docs/media/cyclic-model.js.map +0 -1
  340. package/docs/media/cyclic-model.ts +0 -112
  341. package/docs/media/e5.js.map +0 -1
  342. package/docs/media/e5.ts +0 -36
  343. package/docs/media/hires.js.map +0 -1
  344. package/docs/media/hires.ts +0 -40
  345. package/docs/media/model-updates.js.map +0 -1
  346. package/docs/media/model-updates.ts +0 -122
  347. package/docs/media/orego.js.map +0 -1
  348. package/docs/media/orego.ts +0 -25
  349. package/docs/media/pipeline-use.js.map +0 -1
  350. package/docs/media/pipeline-use.ts +0 -98
  351. package/docs/media/pollution.js.map +0 -1
  352. package/docs/media/pollution.ts +0 -133
  353. package/docs/media/print-benchmark.js.map +0 -1
  354. package/docs/media/print-benchmark.ts +0 -594
  355. package/docs/media/robertson.js.map +0 -1
  356. package/docs/media/robertson.ts +0 -19
  357. package/docs/media/scripting.js.map +0 -1
  358. package/docs/media/scripting.ts +0 -35
  359. package/docs/media/vdpol.js.map +0 -1
  360. package/docs/media/vdpol.ts +0 -17
  361. package/docs/modules.html +0 -1
  362. package/docs/types/Arg.html +0 -12
  363. package/docs/types/DifEqs.html +0 -8
  364. package/docs/types/Func.html +0 -7
  365. package/docs/types/IVP.html +0 -40
  366. package/docs/types/IVP2WebWorker.html +0 -12
  367. package/docs/types/Input.html +0 -8
  368. package/docs/types/Loop.html +0 -7
  369. package/docs/types/ODEs.html +0 -31
  370. package/docs/types/Output.html +0 -6
  371. package/docs/types/Pipeline.html +0 -6
  372. package/docs/types/SolverOptions.html +0 -8
  373. package/docs/types/Update.html +0 -9
  374. package/docs/types/Wrapper.html +0 -8
  375. package/eslintrc.json +0 -45
  376. package/images/E5.png +0 -0
  377. package/images/HIRES.png +0 -0
  378. package/images/OREGO.png +0 -0
  379. package/images/POLL-full.png +0 -0
  380. package/images/POLL.png +0 -0
  381. package/images/ROBER.png +0 -0
  382. package/images/VDP0L.png +0 -0
  383. package/images/VDPOL.png +0 -0
  384. package/images/acid-prod.gif +0 -0
  385. package/index.js.map +0 -1
  386. package/index.ts +0 -17
  387. package/jest.config.js +0 -13
  388. package/src/examples/basic-use.js +0 -40
  389. package/src/examples/basic-use.js.map +0 -1
  390. package/src/examples/basic-use.ts +0 -44
  391. package/src/examples/check-methods.js.map +0 -1
  392. package/src/examples/check-methods.ts +0 -96
  393. package/src/examples/corr-probs.js.map +0 -1
  394. package/src/examples/corr-probs.ts +0 -155
  395. package/src/examples/cyclic-model.js +0 -102
  396. package/src/examples/cyclic-model.js.map +0 -1
  397. package/src/examples/cyclic-model.ts +0 -112
  398. package/src/examples/e5.js +0 -36
  399. package/src/examples/e5.js.map +0 -1
  400. package/src/examples/e5.ts +0 -36
  401. package/src/examples/hires.js +0 -39
  402. package/src/examples/hires.js.map +0 -1
  403. package/src/examples/hires.ts +0 -40
  404. package/src/examples/index.js.map +0 -1
  405. package/src/examples/index.ts +0 -34
  406. package/src/examples/model-updates.js +0 -112
  407. package/src/examples/model-updates.js.map +0 -1
  408. package/src/examples/model-updates.ts +0 -122
  409. package/src/examples/orego.js +0 -24
  410. package/src/examples/orego.js.map +0 -1
  411. package/src/examples/orego.ts +0 -25
  412. package/src/examples/pipeline-use.js +0 -87
  413. package/src/examples/pipeline-use.js.map +0 -1
  414. package/src/examples/pipeline-use.ts +0 -98
  415. package/src/examples/pollution.js +0 -132
  416. package/src/examples/pollution.js.map +0 -1
  417. package/src/examples/pollution.ts +0 -133
  418. package/src/examples/print-benchmark.js +0 -581
  419. package/src/examples/print-benchmark.js.map +0 -1
  420. package/src/examples/robertson.js +0 -19
  421. package/src/examples/robertson.js.map +0 -1
  422. package/src/examples/robertson.ts +0 -19
  423. package/src/examples/scripting.js +0 -30
  424. package/src/examples/scripting.js.map +0 -1
  425. package/src/examples/scripting.ts +0 -35
  426. package/src/examples/vdpol.js +0 -17
  427. package/src/examples/vdpol.js.map +0 -1
  428. package/src/examples/vdpol.ts +0 -17
  429. package/src/pipeline/basic-pipeline-creator.js.map +0 -1
  430. package/src/pipeline/constants.js.map +0 -1
  431. package/src/pipeline/constants.ts +0 -21
  432. package/src/pipeline/index.js.map +0 -1
  433. package/src/pipeline/index.ts +0 -7
  434. package/src/pipeline/input.js.map +0 -1
  435. package/src/pipeline/input.ts +0 -55
  436. package/src/pipeline/loops-pipeline-creator.js.map +0 -1
  437. package/src/pipeline/loops-pipeline-creator.ts +0 -252
  438. package/src/pipeline/output.js.map +0 -1
  439. package/src/pipeline/output.ts +0 -201
  440. package/src/pipeline/pipeline-creator.js.map +0 -1
  441. package/src/pipeline/pipeline-creator.ts +0 -20
  442. package/src/pipeline/pipeline.js.map +0 -1
  443. package/src/pipeline/updates-pipeline-creator.js.map +0 -1
  444. package/src/scripting-tools/constants.js.map +0 -1
  445. package/src/scripting-tools/constants.ts +0 -69
  446. package/src/scripting-tools/index.js.map +0 -1
  447. package/src/scripting-tools/index.ts +0 -8
  448. package/src/scripting-tools/model-error.js.map +0 -1
  449. package/src/scripting-tools/model-error.ts +0 -21
  450. package/src/scripting-tools/scripting-tools.js.map +0 -1
  451. package/src/scripting-tools/scripting-tools.ts +0 -1582
  452. package/src/solver-tools/ab4-method.js.map +0 -1
  453. package/src/solver-tools/ab4-method.ts +0 -395
  454. package/src/solver-tools/ab5-method.js.map +0 -1
  455. package/src/solver-tools/ab5-method.ts +0 -397
  456. package/src/solver-tools/callbacks/callback-base.js.map +0 -1
  457. package/src/solver-tools/callbacks/callback-base.ts +0 -12
  458. package/src/solver-tools/callbacks/callback-tools.js.map +0 -1
  459. package/src/solver-tools/callbacks/callback-tools.ts +0 -22
  460. package/src/solver-tools/callbacks/iter-checker-callback.js.map +0 -1
  461. package/src/solver-tools/callbacks/iter-checker-callback.ts +0 -25
  462. package/src/solver-tools/callbacks/time-checker-callback.js.map +0 -1
  463. package/src/solver-tools/callbacks/time-checker-callback.ts +0 -23
  464. package/src/solver-tools/cvode/common.js +0 -487
  465. package/src/solver-tools/cvode/common.js.map +0 -1
  466. package/src/solver-tools/cvode/common.ts +0 -549
  467. package/src/solver-tools/cvode/cvode.js.map +0 -1
  468. package/src/solver-tools/cvode/cvode.ts +0 -1226
  469. package/src/solver-tools/cvode/cvode_adams.js.map +0 -1
  470. package/src/solver-tools/cvode/cvode_adams.ts +0 -142
  471. package/src/solver-tools/cvode/cvode_bdf.js.map +0 -1
  472. package/src/solver-tools/cvode/cvode_bdf.ts +0 -164
  473. package/src/solver-tools/cvode/cvode_class.js.map +0 -1
  474. package/src/solver-tools/cvode/cvode_class.ts +0 -271
  475. package/src/solver-tools/cvode/cvode_hin.js.map +0 -1
  476. package/src/solver-tools/cvode/cvode_hin.ts +0 -150
  477. package/src/solver-tools/cvode/cvode_io.js.map +0 -1
  478. package/src/solver-tools/cvode/cvode_io.ts +0 -258
  479. package/src/solver-tools/cvode/cvode_ls.js.map +0 -1
  480. package/src/solver-tools/cvode/cvode_ls.ts +0 -249
  481. package/src/solver-tools/cvode/cvode_nls.js.map +0 -1
  482. package/src/solver-tools/cvode/cvode_nls.ts +0 -259
  483. package/src/solver-tools/cvode/cvode_root.js.map +0 -1
  484. package/src/solver-tools/cvode/cvode_root.ts +0 -503
  485. package/src/solver-tools/cvode/dense_linalg.js.map +0 -1
  486. package/src/solver-tools/cvode/dense_linalg.ts +0 -144
  487. package/src/solver-tools/cvode/index.js.map +0 -1
  488. package/src/solver-tools/cvode/index.ts +0 -64
  489. package/src/solver-tools/cvode-method.js.map +0 -1
  490. package/src/solver-tools/cvode-method.ts +0 -129
  491. package/src/solver-tools/index.js.map +0 -1
  492. package/src/solver-tools/index.ts +0 -16
  493. package/src/solver-tools/lin-alg-tools.js.map +0 -1
  494. package/src/solver-tools/lin-alg-tools.ts +0 -75
  495. package/src/solver-tools/lsoda/blas.js.map +0 -1
  496. package/src/solver-tools/lsoda/blas.ts +0 -279
  497. package/src/solver-tools/lsoda/cfode.js.map +0 -1
  498. package/src/solver-tools/lsoda/cfode.ts +0 -95
  499. package/src/solver-tools/lsoda/common.js +0 -94
  500. package/src/solver-tools/lsoda/common.js.map +0 -1
  501. package/src/solver-tools/lsoda/common.ts +0 -135
  502. package/src/solver-tools/lsoda/corfailure.js.map +0 -1
  503. package/src/solver-tools/lsoda/correction.js.map +0 -1
  504. package/src/solver-tools/lsoda/correction.ts +0 -131
  505. package/src/solver-tools/lsoda/dense.js.map +0 -1
  506. package/src/solver-tools/lsoda/dense.ts +0 -141
  507. package/src/solver-tools/lsoda/index.js.map +0 -1
  508. package/src/solver-tools/lsoda/intdy.js.map +0 -1
  509. package/src/solver-tools/lsoda/intdy.ts +0 -62
  510. package/src/solver-tools/lsoda/lsoda.js.map +0 -1
  511. package/src/solver-tools/lsoda/lsoda.ts +0 -644
  512. package/src/solver-tools/lsoda/methodswitch.js.map +0 -1
  513. package/src/solver-tools/lsoda/methodswitch.ts +0 -119
  514. package/src/solver-tools/lsoda/orderswitch.js.map +0 -1
  515. package/src/solver-tools/lsoda/orderswitch.ts +0 -107
  516. package/src/solver-tools/lsoda/prja.js.map +0 -1
  517. package/src/solver-tools/lsoda/prja.ts +0 -61
  518. package/src/solver-tools/lsoda/scaleh.js.map +0 -1
  519. package/src/solver-tools/lsoda/scaleh.ts +0 -45
  520. package/src/solver-tools/lsoda/solsy.js.map +0 -1
  521. package/src/solver-tools/lsoda/stoda.js.map +0 -1
  522. package/src/solver-tools/lsoda/stoda.ts +0 -298
  523. package/src/solver-tools/lsoda-method.js.map +0 -1
  524. package/src/solver-tools/lsoda-method.ts +0 -154
  525. package/src/solver-tools/mrt-method.js.map +0 -1
  526. package/src/solver-tools/mrt-method.ts +0 -398
  527. package/src/solver-tools/rk3-method.js.map +0 -1
  528. package/src/solver-tools/rk3-method.ts +0 -257
  529. package/src/solver-tools/rk4-method.js.map +0 -1
  530. package/src/solver-tools/rk4-method.ts +0 -286
  531. package/src/solver-tools/rkdp-method.js.map +0 -1
  532. package/src/solver-tools/rkdp-method.ts +0 -300
  533. package/src/solver-tools/ros34prw-method.js.map +0 -1
  534. package/src/solver-tools/ros34prw-method.ts +0 -373
  535. package/src/solver-tools/ros3prw-method.js.map +0 -1
  536. package/src/solver-tools/ros3prw-method.ts +0 -342
  537. package/src/solver-tools/solver-defs.js.map +0 -1
  538. package/src/tests/correctness.test.js +0 -15
  539. package/src/tests/correctness.test.js.map +0 -1
  540. package/src/tests/correctness.test.ts +0 -16
  541. package/src/tests/cvode-lib-correctness.test.js +0 -404
  542. package/src/tests/cvode-lib-correctness.test.js.map +0 -1
  543. package/src/tests/cvode-lib-correctness.test.ts +0 -505
  544. package/src/tests/cvode-lib-performance.test.js +0 -103
  545. package/src/tests/cvode-lib-performance.test.js.map +0 -1
  546. package/src/tests/cvode-lib-performance.test.ts +0 -128
  547. package/src/tests/lsoda-lib-correctness.test.js +0 -223
  548. package/src/tests/lsoda-lib-correctness.test.js.map +0 -1
  549. package/src/tests/lsoda-lib-correctness.test.ts +0 -283
  550. package/src/tests/lsoda-lib-performance.test.js +0 -95
  551. package/src/tests/lsoda-lib-performance.test.js.map +0 -1
  552. package/src/tests/lsoda-lib-performance.test.ts +0 -126
  553. package/src/tests/performance.test.js +0 -18
  554. package/src/tests/performance.test.js.map +0 -1
  555. package/src/tests/performance.test.ts +0 -19
  556. package/src/tests/pipeline.test.js +0 -10
  557. package/src/tests/pipeline.test.js.map +0 -1
  558. package/src/tests/pipeline.test.ts +0 -11
  559. package/src/tests/test-defs.js +0 -213
  560. package/src/tests/test-defs.js.map +0 -1
  561. package/src/tests/test-defs.ts +0 -232
  562. package/src/tests/test-utils.js +0 -28
  563. package/src/tests/test-utils.js.map +0 -1
  564. package/src/tests/test-utils.ts +0 -37
  565. package/src/worker-tools/index.js.map +0 -1
  566. package/src/worker-tools/index.ts +0 -2
  567. package/src/worker-tools/scripting.js.map +0 -1
  568. package/src/worker-tools/solving.js.map +0 -1
  569. package/src/worker-tools/solving.ts +0 -86
  570. package/tsconfig.json +0 -71
  571. package/typedoc.json +0 -8
  572. /package/{docs/media → dist/src/examples}/basic-use.js +0 -0
  573. /package/{src → dist/src}/examples/check-methods.js +0 -0
  574. /package/{docs/media → dist/src/examples}/cyclic-model.js +0 -0
  575. /package/{docs/media → dist/src/examples}/e5.js +0 -0
  576. /package/{docs/media → dist/src/examples}/hires.js +0 -0
  577. /package/{src → dist/src}/examples/index.js +0 -0
  578. /package/{docs/media → dist/src/examples}/model-updates.js +0 -0
  579. /package/{docs/media → dist/src/examples}/orego.js +0 -0
  580. /package/{docs/media → dist/src/examples}/pipeline-use.js +0 -0
  581. /package/{docs/media → dist/src/examples}/pollution.js +0 -0
  582. /package/{docs/media → dist/src/examples}/print-benchmark.js +0 -0
  583. /package/{docs/media → dist/src/examples}/scripting.js +0 -0
  584. /package/{docs/media → dist/src/examples}/vdpol.js +0 -0
  585. /package/{src → dist/src}/pipeline/basic-pipeline-creator.js +0 -0
  586. /package/{src → dist/src}/pipeline/constants.js +0 -0
  587. /package/{src → dist/src}/pipeline/index.js +0 -0
  588. /package/{src → dist/src}/pipeline/input.js +0 -0
  589. /package/{src → dist/src}/pipeline/loops-pipeline-creator.js +0 -0
  590. /package/{src → dist/src}/pipeline/pipeline.js +0 -0
  591. /package/{src → dist/src}/pipeline/updates-pipeline-creator.js +0 -0
  592. /package/{src → dist/src}/scripting-tools/constants.js +0 -0
  593. /package/{src → dist/src}/scripting-tools/index.js +0 -0
  594. /package/{src → dist/src}/solver-tools/callbacks/callback-base.js +0 -0
  595. /package/{src → dist/src}/solver-tools/callbacks/callback-tools.js +0 -0
  596. /package/{src → dist/src}/solver-tools/cvode/cvode.js +0 -0
  597. /package/{src → dist/src}/solver-tools/cvode/cvode_adams.js +0 -0
  598. /package/{src → dist/src}/solver-tools/cvode/cvode_bdf.js +0 -0
  599. /package/{src → dist/src}/solver-tools/cvode/cvode_hin.js +0 -0
  600. /package/{src → dist/src}/solver-tools/cvode/cvode_ls.js +0 -0
  601. /package/{src → dist/src}/solver-tools/cvode/cvode_nls.js +0 -0
  602. /package/{src → dist/src}/solver-tools/cvode/cvode_root.js +0 -0
  603. /package/{src → dist/src}/solver-tools/cvode/dense_linalg.js +0 -0
  604. /package/{src → dist/src}/solver-tools/cvode/index.js +0 -0
  605. /package/{src → dist/src}/solver-tools/cvode-method.js +0 -0
  606. /package/{src → dist/src}/solver-tools/index.js +0 -0
  607. /package/{src → dist/src}/solver-tools/lin-alg-tools.js +0 -0
  608. /package/{src → dist/src}/solver-tools/lsoda/blas.js +0 -0
  609. /package/{src → dist/src}/solver-tools/lsoda/cfode.js +0 -0
  610. /package/{src → dist/src}/solver-tools/lsoda/corfailure.js +0 -0
  611. /package/{src → dist/src}/solver-tools/lsoda/correction.js +0 -0
  612. /package/{src → dist/src}/solver-tools/lsoda/index.js +0 -0
  613. /package/{src → dist/src}/solver-tools/lsoda/intdy.js +0 -0
  614. /package/{src → dist/src}/solver-tools/lsoda/methodswitch.js +0 -0
  615. /package/{src → dist/src}/solver-tools/lsoda/orderswitch.js +0 -0
  616. /package/{src → dist/src}/solver-tools/lsoda/prja.js +0 -0
  617. /package/{src → dist/src}/solver-tools/lsoda/scaleh.js +0 -0
  618. /package/{src → dist/src}/solver-tools/lsoda/solsy.js +0 -0
  619. /package/{src → dist/src}/solver-tools/lsoda/stoda.js +0 -0
  620. /package/{src → dist/src}/solver-tools/lsoda-method.js +0 -0
  621. /package/{src → dist/src}/solver-tools/solver-defs.js +0 -0
  622. /package/{src → dist/src}/worker-tools/index.js +0 -0
  623. /package/{src → dist/src}/worker-tools/scripting.js +0 -0
  624. /package/{src → dist/src}/worker-tools/solving.js +0 -0
@@ -1 +0,0 @@
1
- {"version":3,"file":"check-methods.js","sourceRoot":"","sources":["check-methods.ts"],"names":[],"mappings":"AAAA,oCAAoC;AAEpC,OAAO,EAAO,SAAS,EAAe,GAAG,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,KAAK,EAClG,SAAS,EAAE,SAAS,EAAC,MAAM,aAAa,CAAC;AAE3C,wGAAwG;AACxG,SAAS,QAAQ,CAAC,MAAsC,EAAE,OAAoB;IAC5E,IAAI,KAAK,GAAG,CAAC,CAAC;IAEd,yBAAyB;IACzB,MAAM,cAAc,GAAG,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IAE5C,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC;IAE5B,MAAM,GAAG,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC;IAE9B,MAAM,WAAW,GAAG,GAAG,CAAC,MAAM,CAAC;IAC/B,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,GAAG,CAAC,CAAC;IAE7C,gBAAgB;IAChB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC;QACrC,MAAM,aAAa,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAEpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,EAAE,CAAC;YACjC,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC,CAAC,GAAG,cAAc,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACnF,CAAC;IAED,OAAO,KAAK,CAAC;AACf,CAAC,CAAC,WAAW;AAEb,SAAS,8BAA8B,CAAC,QAAwB,EAAE,QAAsB;IACtF,IAAI,QAAQ,GAAG,CAAC,CAAC;IACjB,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC;IACvC,IAAI,GAAG,GAAG,CAAC,CAAC;IAEZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;QACzC,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;QACnD,QAAQ,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;IACrC,CAAC;IAED,OAAO,QAAQ,CAAC;AAClB,CAAC,CAAC,iCAAiC;AAEnC,MAAM,eAAe,GAAG,IAAI,GAAG,CAAC;IAC9B,CAAC,KAAK,EAAE,GAAG,CAAC;IACZ,CAAC,SAAS,EAAE,OAAO,CAAC;IACpB,CAAC,UAAU,EAAE,QAAQ,CAAC;IACtB,CAAC,OAAO,EAAE,KAAK,CAAC;IAChB,CAAC,OAAO,EAAE,KAAK,CAAC;CACjB,CAAC,CAAC;AAEH,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC;IACtB,GAAG,eAAe;IAClB,CAAC,KAAK,EAAE,GAAG,CAAC;IACZ,CAAC,KAAK,EAAE,GAAG,CAAC;IACZ,CAAC,KAAK,EAAE,GAAG,CAAC;IACZ,CAAC,MAAM,EAAE,IAAI,CAAC;IACd,CAAC,KAAK,EAAE,GAAG,CAAC;CACb,CAAC,CAAC;AAEH,OAAO,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC;AAE7B,eAAe,CAAC,OAAO,CAAC,CAAC,MAAM,EAAE,IAAI,EAAE,EAAE;IACvC,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;IAEvB,OAAO,CAAC,GAAG,CAAC,qCAAqC,CAAC,CAAC;IAEnD,SAAS,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE;QAC9B,IAAI,IAAI,KAAK,OAAO,IAAI,IAAI,CAAC,IAAI,KAAK,IAAI;YACxC,OAAO;QAET,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QACzB,MAAM,QAAQ,GAAG,MAAM,CAAC,IAAI,CAAC,CAAC;QAC9B,MAAM,MAAM,GAAG,8BAA8B,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC;QAClG,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QAC1B,OAAO,CAAC,GAAG,CAAC,KAAK,IAAI,CAAC,IAAI,QAAQ,MAAM,GAAG,KAAK,QAAQ,MAAM,EAAE,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;IACjF,CAAC,CAAC,CAAC;IAEH,OAAO,CAAC,GAAG,EAAE,CAAC;AAChB,CAAC,CAAC,CAAC;AAEH,OAAO,CAAC,GAAG,CAAC,mDAAmD,CAAC,CAAC;AAEjE,OAAO,CAAC,GAAG,CAAC,mEAAmE,CAAC,CAAC;AAEjF,OAAO,CAAC,OAAO,CAAC,CAAC,MAAM,EAAE,IAAI,EAAE,EAAE;IAC/B,OAAO,CAAC,GAAG,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC;IACxB,OAAO,CAAC,GAAG,CAAC,yBAAyB,CAAC,CAAC;IAEvC,SAAS,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE;QAC5B,MAAM,KAAK,GAAG,QAAQ,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;QACxC,OAAO,CAAC,GAAG,CAAC,QAAQ,OAAO,CAAC,IAAI,CAAC,IAAI,OAAO,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;IACrF,CAAC,CAAC,CAAC;IAEH,OAAO,CAAC,GAAG,EAAE,CAAC;AAChB,CAAC,CAAC,CAAC"}
@@ -1,96 +0,0 @@
1
- // A script for checking performance
2
-
3
- import {ODEs, corrProbs, CorrProblem, mrt, ros3prw, ros34prw, rk4, ab5, ab4, rkdp, rk3, lsoda, cvode,
4
- perfProbs, refPoints} from '../../index';
5
-
6
- /** Return numerical solution error: maximum absolute deviation between approximate & exact solutions */
7
- function getError(method: (odes: ODEs) => Float64Array[], corProb: CorrProblem): number {
8
- let error = 0;
9
-
10
- // Get numerical solution
11
- const approxSolution = method(corProb.odes);
12
-
13
- const exact = corProb.exact;
14
-
15
- const arg = approxSolution[0];
16
-
17
- const pointsCount = arg.length;
18
- const funcsCount = approxSolution.length - 1;
19
-
20
- // Compute error
21
- for (let i = 0; i < pointsCount; ++i) {
22
- const exactSolution = exact(arg[i]);
23
-
24
- for (let j = 0; j < funcsCount; ++j)
25
- error = Math.max(error, Math.abs(exactSolution[j] - approxSolution[j + 1][i]));
26
- }
27
-
28
- return error;
29
- } // getError
30
-
31
- function getDeviationFromReferencePoint(solution: Float64Array[], refPoint: Float64Array): number {
32
- let absolute = 0;
33
- const lastIdx = solution[0].length - 1;
34
- let cur = 0;
35
-
36
- for (let k = 0; k < solution.length; ++k) {
37
- cur = Math.abs(solution[k][lastIdx] - refPoint[k]);
38
- absolute = Math.max(cur, absolute);
39
- }
40
-
41
- return absolute;
42
- } // getDeviationFromReferencePoint
43
-
44
- const implicitMethods = new Map([
45
- ['MRT', mrt],
46
- ['ROS3PRw', ros3prw],
47
- ['ROS34PRw', ros34prw],
48
- ['LSODA', lsoda],
49
- ['CVODE', cvode],
50
- ]);
51
-
52
- const methods = new Map([
53
- ...implicitMethods,
54
- ['RK4', rk4],
55
- ['AB5', ab5],
56
- ['AB4', ab4],
57
- ['RKDP', rkdp],
58
- ['RK3', rk3],
59
- ]);
60
-
61
- console.log('Performance\n');
62
-
63
- implicitMethods.forEach((method, name) => {
64
- console.log(' ', name);
65
-
66
- console.log(' PROBLEM TIME,MS ERR*');
67
-
68
- perfProbs.forEach((odes, idx) => {
69
- if (name === 'CVODE' && odes.name === 'E5')
70
- return;
71
-
72
- const start = Date.now();
73
- const solution = method(odes);
74
- const absErr = getDeviationFromReferencePoint(solution.slice(1), refPoints[idx]).toExponential(2);
75
- const finish = Date.now();
76
- console.log(` ${odes.name} ${finish - start} ${absErr}`.padStart(37));
77
- });
78
-
79
- console.log();
80
- });
81
-
82
- console.log('* approximate vs. reference (also, numerical)\n\n');
83
-
84
- console.log('Correctness (maximum absolute deviation): approximate vs. exact\n');
85
-
86
- methods.forEach((method, name) => {
87
- console.log(' ', name);
88
- console.log(' PROBLEM ERR');
89
-
90
- corrProbs.forEach((problem) => {
91
- const error = getError(method, problem);
92
- console.log(` ${problem.odes.name} ${error.toExponential(2)}`.padStart(28));
93
- });
94
-
95
- console.log();
96
- });
@@ -1 +0,0 @@
1
- {"version":3,"file":"corr-probs.js","sourceRoot":"","sources":["corr-probs.ts"],"names":[],"mappings":"AAAA,+DAA+D;AAI/D,4DAA4D;AAC5D,MAAM,UAAU,GAAS;IACvB,IAAI,EAAE,cAAc;IACpB,GAAG,EAAE,EAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAC;IACjD,OAAO,EAAE,CAAC,CAAC,CAAC;IACZ,IAAI,EAAE,CAAC,CAAS,EAAE,CAAe,EAAE,MAAoB,EAAE,EAAE;QACzD,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IACjD,CAAC;IACD,SAAS,EAAE,OAAO;IAClB,gBAAgB,EAAE,CAAC,GAAG,CAAC;CACxB,CAAC;AAEF,kEAAkE;AAClE,MAAM,eAAe,GAAG,CAAC,CAAS,EAAE,EAAE;IACpC,OAAO,IAAI,YAAY,CAAC;QACtB,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,GAAG,GAAG,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC;KAC5E,CAAC,CAAC;AACL,CAAC,CAAC;AAEF,0CAA0C;AAC1C,MAAM,UAAU,GAAS;IACvB,IAAI,EAAE,cAAc;IACpB,GAAG,EAAE,EAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAC;IACjD,OAAO,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC;IACf,IAAI,EAAE,CAAC,CAAS,EAAE,CAAe,EAAE,MAAoB,EAAE,EAAE;QACzD,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACxB,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1B,CAAC;IACD,SAAS,EAAE,WAAW;IACtB,gBAAgB,EAAE,CAAC,GAAG,EAAE,GAAG,CAAC;CAC7B,CAAC;AAEF,gDAAgD;AAChD,MAAM,eAAe,GAAG,CAAC,CAAS,EAAE,EAAE;IACpC,OAAO,IAAI,YAAY,CAAC;QACtB,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;QACzC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;KAC1C,CAAC,CAAC;AACL,CAAC,CAAC;AAEF,2CAA2C;AAC3C,MAAM,UAAU,GAAS;IACvB,IAAI,EAAE,cAAc;IACpB,GAAG,EAAE,EAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,KAAK,EAAC;IAClD,OAAO,EAAE,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACvB,IAAI,EAAE,CAAC,CAAS,EAAE,CAAe,EAAE,MAAoB,EAAE,EAAE;QACzD,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;QAC9C,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;QAC/C,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,SAAA,CAAC,EAAE,CAAC,CAAA,GAAG,CAAC,GAAG,SAAA,CAAC,EAAE,CAAC,CAAA,GAAG,CAAC,GAAG,CAAC,CAAC;IAC1C,CAAC;IACD,SAAS,EAAE,UAAU;IACrB,gBAAgB,EAAE,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC;CAClC,CAAC;AAEF,gDAAgD;AAChD,MAAM,eAAe,GAAG,CAAC,CAAS,EAAE,EAAE;IACpC,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IACvB,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IAC3B,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IAC3B,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IACtB,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IAEtB,OAAO,IAAI,YAAY,CAAC;QACtB,EAAE,GAAG,EAAE,GAAG,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE;QACpC,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE;QAC7C,SAAA,CAAC,EAAE,CAAC,CAAA,GAAG,SAAA,CAAC,EAAE,CAAC,CAAA,GAAG,SAAA,CAAC,EAAE,CAAC,CAAA;KACnB,CAAC,CAAC;AACL,CAAC,CAAC;AAEF,wDAAwD;AACxD,MAAM,OAAO,GAAS;IACpB,IAAI,EAAE,UAAU;IAChB,GAAG,EAAE,EAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAC;IACjD,OAAO,EAAE,CAAC,CAAC,CAAC;IACZ,IAAI,EAAE,CAAC,CAAS,EAAE,CAAe,EAAE,MAAoB,EAAE,EAAE;QACzD,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,GAAG,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IACxD,CAAC;IACD,SAAS,EAAE,SAAS;IACpB,gBAAgB,EAAE,CAAC,GAAG,CAAC;CACxB,CAAC;AAEF,8DAA8D;AAC9D,MAAM,YAAY,GAAG,CAAC,CAAS,EAAE,EAAE;IACjC,OAAO,IAAI,YAAY,CAAC;QACtB,CAAC,GAAG,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,GAAG,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;KACvD,CAAC,CAAC;AACL,CAAC,CAAC;AAEF,yDAAyD;AACzD,MAAM,OAAO,GAAS;IACpB,IAAI,EAAE,UAAU;IAChB,GAAG,EAAE,EAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAC;IACjD,OAAO,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC;IACvB,IAAI,EAAE,CAAC,CAAS,EAAE,CAAe,EAAE,MAAoB,EAAE,EAAE;QACzD,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACjC,MAAM,CAAC,CAAC,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IACtC,CAAC;IACD,SAAS,EAAE,SAAS;IACpB,gBAAgB,EAAE,CAAC,GAAG,EAAE,GAAG,CAAC;CAC7B,CAAC;AAEF,8DAA8D;AAC9D,MAAM,YAAY,GAAG,CAAC,CAAS,EAAE,EAAE;IACjC,OAAO,IAAI,YAAY,CAAC;QACtB,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,QAAQ,GAAG,CAAC,CAAC;QAC9D,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,QAAQ,GAAG,CAAC,CAAC;KAChE,CAAC,CAAC;AACL,CAAC,CAAC;AAEF,uCAAuC;AACvC,MAAM,OAAO,GAAS;IACpB,IAAI,EAAE,UAAU;IAChB,GAAG,EAAE,EAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAC;IACjD,OAAO,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;IAClB,IAAI,EAAE,CAAC,CAAS,EAAE,CAAe,EAAE,MAAoB,EAAE,EAAE;QACzD,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAC5C,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACjB,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACpB,CAAC;IACD,SAAS,EAAE,UAAU;IACrB,gBAAgB,EAAE,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC;CAClC,CAAC;AAEF,4CAA4C;AAC5C,MAAM,YAAY,GAAG,CAAC,CAAS,EAAE,EAAE;IACjC,OAAO,IAAI,YAAY,CAAC;QACtB,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;QAChC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;QACX,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;KACb,CAAC,CAAC;AACL,CAAC,CAAC;AAUF;;GAEG;AACH,MAAM,CAAC,MAAM,SAAS,GAAG;IACvB,EAAC,IAAI,EAAE,UAAU,EAAE,KAAK,EAAE,eAAe,EAAC;IAC1C,EAAC,IAAI,EAAE,UAAU,EAAE,KAAK,EAAE,eAAe,EAAC;IAC1C,EAAC,IAAI,EAAE,UAAU,EAAE,KAAK,EAAE,eAAe,EAAC;IAC1C,EAAC,IAAI,EAAE,OAAO,EAAE,KAAK,EAAE,YAAY,EAAC;IACpC,EAAC,IAAI,EAAE,OAAO,EAAE,KAAK,EAAE,YAAY,EAAC;IACpC,EAAC,IAAI,EAAE,OAAO,EAAE,KAAK,EAAE,YAAY,EAAC;CACrC,CAAC"}
@@ -1,155 +0,0 @@
1
- // Problems with known exact solution (for testing correctness)
2
-
3
- import {ODEs} from '../../index';
4
-
5
- /** Non-stiff 1D test problem: equation (see [1], p. 736) */
6
- const nonStiff1D: ODEs = {
7
- name: 'non-stiff 1D',
8
- arg: {name: 't', start: 0, finish: 4, step: 0.01},
9
- initial: [2],
10
- func: (t: number, y: Float64Array, output: Float64Array) => {
11
- output[0] = 4 * Math.exp(0.8 * t) - 0.5 * y[0];
12
- },
13
- tolerance: 0.00001,
14
- solutionColNames: ['y'],
15
- };
16
-
17
- /** Non-stiff 1D test problem: exact solution (see [1], p. 736) */
18
- const exactNonStiff1D = (t: number) => {
19
- return new Float64Array([
20
- (Math.exp(0.8 * t) - Math.exp(-0.5 * t)) * 4 / 1.3 + 2 * Math.exp(-0.5 * t),
21
- ]);
22
- };
23
-
24
- /** Non-stiff 2D test problem: equation */
25
- const nonStiff2D: ODEs = {
26
- name: 'non-stiff 2D',
27
- arg: {name: 't', start: 0, finish: 4, step: 0.01},
28
- initial: [1, 1],
29
- func: (t: number, y: Float64Array, output: Float64Array) => {
30
- output[0] = y[0] + y[1];
31
- output[1] = y[1] - y[0];
32
- },
33
- tolerance: 0.000000001,
34
- solutionColNames: ['x', 'y'],
35
- };
36
-
37
- /** Non-stiff 2D test problem: exact solution */
38
- const exactNonStiff2D = (t: number) => {
39
- return new Float64Array([
40
- Math.exp(t) * (Math.cos(t) + Math.sin(t)),
41
- Math.exp(t) * (Math.cos(t) - Math.sin(t)),
42
- ]);
43
- };
44
-
45
- /** Non-stiff 3D test problem: equations */
46
- const nonStiff3D: ODEs = {
47
- name: 'non-stiff 3D',
48
- arg: {name: 't', start: 0, finish: 2, step: 0.001},
49
- initial: [0.3, -0.8, 0],
50
- func: (t: number, y: Float64Array, output: Float64Array) => {
51
- output[0] = 5 * y[0] + 2 * y[1] + Math.sin(t);
52
- output[1] = -4 * y[0] - y[1] + Math.exp(2 * t);
53
- output[2] = 5 * t**4 - 3 * t**2 + 2 * t;
54
- },
55
- tolerance: 0.00000001,
56
- solutionColNames: ['x', 'y', 'z'],
57
- };
58
-
59
- /** Non-stiff 3D test problem: exact solution */
60
- const exactNonStiff3D = (t: number) => {
61
- const e1 = Math.exp(t);
62
- const e2 = Math.exp(2 * t);
63
- const e3 = Math.exp(3 * t);
64
- const c = Math.cos(t);
65
- const s = Math.sin(t);
66
-
67
- return new Float64Array([
68
- e1 + e3 + 0.1 * (3 * c - s) - 2 * e2,
69
- -2 * e1 - e3 - 0.2 * (2 * s + 4 * c) + 3 * e2,
70
- t**5 - t**3 + t**2,
71
- ]);
72
- };
73
-
74
- /** Stiff 1D test problem: equation (see [1], p. 767) */
75
- const stiff1D: ODEs = {
76
- name: 'stiff 1D',
77
- arg: {name: 't', start: 0, finish: 4, step: 0.01},
78
- initial: [0],
79
- func: (t: number, y: Float64Array, output: Float64Array) => {
80
- output[0] = -1000 * y[0] + 3000 - 2000 * Math.exp(-t);
81
- },
82
- tolerance: 0.0000005,
83
- solutionColNames: ['y'],
84
- };
85
-
86
- /** Stiff 1D test problem: exact solution (see [1], p. 767) */
87
- const exactStiff1D = (t: number) => {
88
- return new Float64Array([
89
- 3 - 0.998 * Math.exp(-1000 * t) - 2.002 * Math.exp(-t),
90
- ]);
91
- };
92
-
93
- /** Stiff 2D test problem: equations (see [1], p. 770) */
94
- const stiff2D: ODEs = {
95
- name: 'stiff 2D',
96
- arg: {name: 't', start: 0, finish: 4, step: 0.01},
97
- initial: [52.29, 83.82],
98
- func: (t: number, y: Float64Array, output: Float64Array) => {
99
- output[0] = -5 * y[0] + 3 * y[1];
100
- output[1] = 100 * y[0] - 301 * y[1];
101
- },
102
- tolerance: 0.0000005,
103
- solutionColNames: ['x', 'y'],
104
- };
105
-
106
- /** Stiff 2D test problem: exact solution (see [1], p. 770) */
107
- const exactStiff2D = (t: number) => {
108
- return new Float64Array([
109
- 52.96 * Math.exp(-3.9899 * t) - 0.67 * Math.exp(-302.0101 * t),
110
- 17.83 * Math.exp(-3.9899 * t) + 65.99 * Math.exp(-302.0101 * t),
111
- ]);
112
- };
113
-
114
- /** Stiff 3D test problem: equations */
115
- const stiff3D: ODEs = {
116
- name: 'stiff 3D',
117
- arg: {name: 't', start: 0, finish: 4, step: 0.01},
118
- initial: [2, 1, 0],
119
- func: (t: number, y: Float64Array, output: Float64Array) => {
120
- output[0] = -100 * y[0] + 100 * y[1] + y[2];
121
- output[1] = y[2];
122
- output[2] = -y[1];
123
- },
124
- tolerance: 0.00000001,
125
- solutionColNames: ['x', 'y', 'z'],
126
- };
127
-
128
- /** Stiff 3D test problem: exact solution */
129
- const exactStiff3D = (t: number) => {
130
- return new Float64Array([
131
- Math.exp(-100 * t) + Math.cos(t),
132
- Math.cos(t),
133
- -Math.sin(t),
134
- ]);
135
- };
136
-
137
- /** Correctness problem
138
- * @internal
139
- */
140
- export type CorrProblem = {
141
- odes: ODEs,
142
- exact: (t: number) => Float64Array,
143
- };
144
-
145
- /** Problems for testing correctness
146
- * @internal
147
- */
148
- export const corrProbs = [
149
- {odes: nonStiff1D, exact: exactNonStiff1D},
150
- {odes: nonStiff2D, exact: exactNonStiff2D},
151
- {odes: nonStiff3D, exact: exactNonStiff3D},
152
- {odes: stiff1D, exact: exactStiff1D},
153
- {odes: stiff2D, exact: exactStiff2D},
154
- {odes: stiff3D, exact: exactStiff3D},
155
- ];
@@ -1,102 +0,0 @@
1
- /* eslint-disable max-len */
2
- /** This example shows how to apply pipelines and cyclic models.
3
- This approach can be used for in-webworkers analysis of models.
4
-
5
- Here, we consider pharmacokinetic-pharmacodynamic (PK-PD) simulation: two-compartment model.
6
- */
7
- import * as DGL from '../../index';
8
- /** 1. Model specification */
9
- const model = `#name: PK-PD
10
- #tags: model
11
- #description: Pharmacokinetic-pharmacodynamic (PK-PD) simulation: two-compartment model
12
- #equations:
13
- d(depot)/dt = -KA * depot
14
- d(centr)/dt = KA * depot - CL * C2 - Q * C2 + Q * C3
15
- d(peri)/dt = Q * C2 - Q * C3
16
- d(eff)/dt = Kin - Kout * (1 - C2/(EC50 + C2)) * eff
17
-
18
- #expressions:
19
- C2 = centr / V2
20
- C3 = peri / V3
21
-
22
- #loop:
23
- _count = 10 {caption: count; category: Dosing; min: 1; max: 20} [Number of doses]
24
- depot += dose
25
-
26
- #argument: t
27
- _t0 = 0 {units: h; caption: begin; category: Dosing; min: 0; max: 1} [Begin of dosing interval]
28
- _t1 = 12 {units: h; caption: end; category: Dosing; min: 5; max: 15} [End of dosing interval]
29
- _h = 1 {units: h; caption: step; category: Dosing; min: 0.01; max: 0.1} [Time step of simulation]
30
-
31
- #inits:
32
- depot = 0 {category: Initial values}
33
- centr = 0 {category: Initial values} [Central]
34
- peri = 0 {category: Initial values} [Peripheral]
35
- eff = 0.2 {category: Initial values} [Effective compartment rate]
36
-
37
- #parameters:
38
- dose = 1e4 {category: Dosing; min: 1e3; max: 2e4; step: 1e3} [Dosage]
39
- KA = 0.3 {caption: rate constant; category: Parameters; min: 0.1; max: 1}
40
- CL = 2 {caption: clearance; category: Parameters; min: 1; max: 5}
41
- V2 = 4 {caption: central volume; category: Parameters; min: 1; max: 10} [Central compartment volume]
42
- Q = 1 {caption: inter rate; category: Parameters; min: 0.1; max: 1} [Intercompartmental rate]
43
- V3 = 30 {caption: peri volume; category: Parameters; min: 20; max: 40} [Peripheral compartment volume]
44
- EC50 = 8 {caption: effect; category: Parameters; min: 1; max: 10}
45
- Kin = 0.2 {caption: Kin; category: Parameters; min: 0.1; max: 0.5} [The first-order production constant]
46
- Kout = 0.2 {caption: Kout; category: Parameters; min: 0.1; max: 0.5} [The first-order dissipation rate constant]
47
-
48
- #tolerance: 1e-9
49
-
50
- #meta.solver: {method: 'rkdp'; maxTimeMs: 5000}`;
51
- /** 2. Generate IVP-objects: for the main thread & for computations in webworkers */
52
- const ivp = DGL.getIVP(model);
53
- const ivpWW = DGL.getIvp2WebWorker(ivp);
54
- /** 3. Perform computations */
55
- try {
56
- // 3.1) Extract names of outputs
57
- const outputNames = DGL.getOutputNames(ivp);
58
- const outSize = outputNames.length;
59
- // 3.2) Set model inputs
60
- const inputs = {
61
- _count: 10,
62
- _t0: 0,
63
- _t1: 16,
64
- _h: 1,
65
- depot: 0,
66
- centr: 0,
67
- peri: 0,
68
- eff: 0.2,
69
- dose: 10000,
70
- KA: 0.63,
71
- CL: 3.2,
72
- V2: 6.58,
73
- Q: 0.622,
74
- V3: 35.6,
75
- EC50: 5.41,
76
- Kin: 0.272,
77
- Kout: 0.276,
78
- };
79
- const inputVector = DGL.getInputVector(inputs, ivp);
80
- // 3.3) Create a pipeline
81
- const creator = DGL.getPipelineCreator(ivp);
82
- const pipeline = creator.getPipeline(inputVector);
83
- // 3.4) Apply pipeline to perform computations
84
- const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
85
- // 3.5) Print results
86
- // 3.5.1) Table header
87
- let line = ' ';
88
- outputNames.forEach((name) => line += name + ' ');
89
- console.log(line);
90
- // 3.5.2) Table with solution
91
- const length = solution[0].length;
92
- for (let i = 0; i < length; ++i) {
93
- line = '';
94
- for (let j = 0; j < outSize; ++j)
95
- line += solution[j][i].toFixed(8) + ' ';
96
- console.log(line);
97
- }
98
- }
99
- catch (err) {
100
- console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
101
- }
102
- //# sourceMappingURL=cyclic-model.js.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"cyclic-model.js","sourceRoot":"","sources":["cyclic-model.ts"],"names":[],"mappings":"AAAA,4BAA4B;AAC5B;;;;EAIE;AAEF,OAAO,KAAK,GAAG,MAAM,aAAa,CAAC;AAEnC,6BAA6B;AAC7B,MAAM,KAAK,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;gDAyCkC,CAAC;AAEjD,oFAAoF;AACpF,MAAM,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AAC9B,MAAM,KAAK,GAAG,GAAG,CAAC,gBAAgB,CAAC,GAAG,CAAC,CAAC;AAExC,8BAA8B;AAC9B,IAAI,CAAC;IACH,gCAAgC;IAChC,MAAM,WAAW,GAAG,GAAG,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC;IAC5C,MAAM,OAAO,GAAG,WAAW,CAAC,MAAM,CAAC;IAEnC,wBAAwB;IACxB,MAAM,MAAM,GAAG;QACb,MAAM,EAAE,EAAE;QACV,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,EAAE;QACP,EAAE,EAAE,CAAC;QACL,KAAK,EAAE,CAAC;QACR,KAAK,EAAE,CAAC;QACR,IAAI,EAAE,CAAC;QACP,GAAG,EAAE,GAAG;QACR,IAAI,EAAE,KAAK;QACX,EAAE,EAAE,IAAI;QACR,EAAE,EAAE,GAAG;QACP,EAAE,EAAE,IAAI;QACR,CAAC,EAAE,KAAK;QACR,EAAE,EAAE,IAAI;QACR,IAAI,EAAE,IAAI;QACV,GAAG,EAAE,KAAK;QACV,IAAI,EAAE,KAAK;KACZ,CAAC;IACF,MAAM,WAAW,GAAG,GAAG,CAAC,cAAc,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC;IAEpD,yBAAyB;IACzB,MAAM,OAAO,GAAG,GAAG,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAC;IAC5C,MAAM,QAAQ,GAAG,OAAO,CAAC,WAAW,CAAC,WAAW,CAAC,CAAC;IAElD,8CAA8C;IAC9C,MAAM,QAAQ,GAAG,GAAG,CAAC,aAAa,CAAC,QAAQ,EAAE,KAAK,EAAE,WAAW,CAAC,CAAC;IAEjE,qBAAqB;IAErB,sBAAsB;IACtB,IAAI,IAAI,GAAG,WAAW,CAAC;IACvB,WAAW,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,IAAI,IAAI,GAAG,aAAa,CAAC,CAAC;IAC5D,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IAElB,6BAA6B;IAC7B,MAAM,MAAM,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;QAChC,IAAI,GAAG,EAAE,CAAC;QAEV,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,EAAE,EAAE,CAAC;YAC9B,IAAI,IAAI,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC;QAE9C,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IACpB,CAAC;AACH,CAAC;AAAC,OAAO,GAAG,EAAE,CAAC;IACb,OAAO,CAAC,GAAG,CAAC,qBAAqB,EAAE,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,kBAAkB,CAAC,CAAC;AAC9F,CAAC"}
@@ -1,112 +0,0 @@
1
- /* eslint-disable max-len */
2
- /** This example shows how to apply pipelines and cyclic models.
3
- This approach can be used for in-webworkers analysis of models.
4
-
5
- Here, we consider pharmacokinetic-pharmacodynamic (PK-PD) simulation: two-compartment model.
6
- */
7
-
8
- import * as DGL from '../../index';
9
-
10
- /** 1. Model specification */
11
- const model = `#name: PK-PD
12
- #tags: model
13
- #description: Pharmacokinetic-pharmacodynamic (PK-PD) simulation: two-compartment model
14
- #equations:
15
- d(depot)/dt = -KA * depot
16
- d(centr)/dt = KA * depot - CL * C2 - Q * C2 + Q * C3
17
- d(peri)/dt = Q * C2 - Q * C3
18
- d(eff)/dt = Kin - Kout * (1 - C2/(EC50 + C2)) * eff
19
-
20
- #expressions:
21
- C2 = centr / V2
22
- C3 = peri / V3
23
-
24
- #loop:
25
- _count = 10 {caption: count; category: Dosing; min: 1; max: 20} [Number of doses]
26
- depot += dose
27
-
28
- #argument: t
29
- _t0 = 0 {units: h; caption: begin; category: Dosing; min: 0; max: 1} [Begin of dosing interval]
30
- _t1 = 12 {units: h; caption: end; category: Dosing; min: 5; max: 15} [End of dosing interval]
31
- _h = 1 {units: h; caption: step; category: Dosing; min: 0.01; max: 0.1} [Time step of simulation]
32
-
33
- #inits:
34
- depot = 0 {category: Initial values}
35
- centr = 0 {category: Initial values} [Central]
36
- peri = 0 {category: Initial values} [Peripheral]
37
- eff = 0.2 {category: Initial values} [Effective compartment rate]
38
-
39
- #parameters:
40
- dose = 1e4 {category: Dosing; min: 1e3; max: 2e4; step: 1e3} [Dosage]
41
- KA = 0.3 {caption: rate constant; category: Parameters; min: 0.1; max: 1}
42
- CL = 2 {caption: clearance; category: Parameters; min: 1; max: 5}
43
- V2 = 4 {caption: central volume; category: Parameters; min: 1; max: 10} [Central compartment volume]
44
- Q = 1 {caption: inter rate; category: Parameters; min: 0.1; max: 1} [Intercompartmental rate]
45
- V3 = 30 {caption: peri volume; category: Parameters; min: 20; max: 40} [Peripheral compartment volume]
46
- EC50 = 8 {caption: effect; category: Parameters; min: 1; max: 10}
47
- Kin = 0.2 {caption: Kin; category: Parameters; min: 0.1; max: 0.5} [The first-order production constant]
48
- Kout = 0.2 {caption: Kout; category: Parameters; min: 0.1; max: 0.5} [The first-order dissipation rate constant]
49
-
50
- #tolerance: 1e-9
51
-
52
- #meta.solver: {method: 'rkdp'; maxTimeMs: 5000}`;
53
-
54
- /** 2. Generate IVP-objects: for the main thread & for computations in webworkers */
55
- const ivp = DGL.getIVP(model);
56
- const ivpWW = DGL.getIvp2WebWorker(ivp);
57
-
58
- /** 3. Perform computations */
59
- try {
60
- // 3.1) Extract names of outputs
61
- const outputNames = DGL.getOutputNames(ivp);
62
- const outSize = outputNames.length;
63
-
64
- // 3.2) Set model inputs
65
- const inputs = {
66
- _count: 10,
67
- _t0: 0,
68
- _t1: 16,
69
- _h: 1,
70
- depot: 0,
71
- centr: 0,
72
- peri: 0,
73
- eff: 0.2,
74
- dose: 10000,
75
- KA: 0.63,
76
- CL: 3.2,
77
- V2: 6.58,
78
- Q: 0.622,
79
- V3: 35.6,
80
- EC50: 5.41,
81
- Kin: 0.272,
82
- Kout: 0.276,
83
- };
84
- const inputVector = DGL.getInputVector(inputs, ivp);
85
-
86
- // 3.3) Create a pipeline
87
- const creator = DGL.getPipelineCreator(ivp);
88
- const pipeline = creator.getPipeline(inputVector);
89
-
90
- // 3.4) Apply pipeline to perform computations
91
- const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
92
-
93
- // 3.5) Print results
94
-
95
- // 3.5.1) Table header
96
- let line = ' ';
97
- outputNames.forEach((name) => line += name + ' ');
98
- console.log(line);
99
-
100
- // 3.5.2) Table with solution
101
- const length = solution[0].length;
102
- for (let i = 0; i < length; ++i) {
103
- line = '';
104
-
105
- for (let j = 0; j < outSize; ++j)
106
- line += solution[j][i].toFixed(8) + ' ';
107
-
108
- console.log(line);
109
- }
110
- } catch (err) {
111
- console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
112
- }
@@ -1,36 +0,0 @@
1
- /** Kintetic constants for the E5 model */
2
- var E5;
3
- (function (E5) {
4
- E5[E5["K1"] = 7.89e-10] = "K1";
5
- E5[E5["K2"] = 1130000000] = "K2";
6
- E5[E5["K3"] = 11000000] = "K3";
7
- E5[E5["K4"] = 1130] = "K4";
8
- })(E5 || (E5 = {}));
9
- ;
10
- /** The E5 model (chemical pyrolysis: https://archimede.uniba.it/~testset/report/e5.pdf) */
11
- export const e5 = {
12
- name: 'E5',
13
- arg: { name: 't', start: 0, finish: 1e13, step: 2.5e8 },
14
- initial: [0.00176, 0, 0, 0],
15
- func: (t, y, output) => {
16
- // extract function values
17
- const y1 = y[0];
18
- const y2 = y[1];
19
- const y3 = y[2];
20
- const y4 = y[3];
21
- // compute output
22
- output[0] = -E5.K1 * y1 - E5.K3 * y1 * y3;
23
- output[1] = E5.K1 * y1 - E5.K2 * y2 * y3;
24
- output[2] = E5.K1 * y1 - E5.K2 * y2 * y3 - E5.K3 * y1 * y3 + E5.K4 * y4;
25
- output[3] = E5.K3 * y1 * y3 - E5.K4 * y4;
26
- },
27
- tolerance: 1e-6,
28
- solutionColNames: ['y1', 'y2', 'y3', 'y4'],
29
- };
30
- export const e5ReferencePoint = new Float64Array([
31
- 0.1152903278711829E-290,
32
- 0.8867655517642120E-22,
33
- 0.8854814626268838E-22,
34
- 0,
35
- ]);
36
- //# sourceMappingURL=e5.js.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"e5.js","sourceRoot":"","sources":["e5.ts"],"names":[],"mappings":"AAAC,0CAA0C;AAC1C,IAAK,EAKH;AALF,WAAK,EAAE;IACJ,8BAAa,CAAA;IACb,gCAAW,CAAA;IACX,8BAAU,CAAA;IACV,0BAAW,CAAA;AACb,CAAC,EALG,EAAE,KAAF,EAAE,QAKL;AAAA,CAAC;AAEJ,2FAA2F;AAC3F,MAAM,CAAC,MAAM,EAAE,GAAG;IAChB,IAAI,EAAE,IAAI;IACV,GAAG,EAAE,EAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,EAAC;IACrD,OAAO,EAAE,CAAC,OAAO,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;IAC3B,IAAI,EAAE,CAAC,CAAS,EAAE,CAAe,EAAE,MAAoB,EAAE,EAAE;QACzD,0BAA0B;QAC1B,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAEhB,iBAAiB;QACjB,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC;QAC1C,MAAM,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC;QACzC,MAAM,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC;QACxE,MAAM,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC;IAC3C,CAAC;IACD,SAAS,EAAE,IAAI;IACf,gBAAgB,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;CAC3C,CAAC;AAEF,MAAM,CAAC,MAAM,gBAAgB,GAAG,IAAI,YAAY,CAAC;IAC/C,uBAAuB;IACvB,sBAAsB;IACtB,sBAAsB;IACtB,CAAC;CACF,CAAC,CAAC"}
@@ -1,36 +0,0 @@
1
- /** Kintetic constants for the E5 model */
2
- enum E5 {
3
- K1 = 7.89e-10,
4
- K2 = 1.13e9,
5
- K3 = 1.1e7,
6
- K4 = 1.13e3,
7
- };
8
-
9
- /** The E5 model (chemical pyrolysis: https://archimede.uniba.it/~testset/report/e5.pdf) */
10
- export const e5 = {
11
- name: 'E5',
12
- arg: {name: 't', start: 0, finish: 1e13, step: 2.5e8},
13
- initial: [0.00176, 0, 0, 0],
14
- func: (t: number, y: Float64Array, output: Float64Array) => {
15
- // extract function values
16
- const y1 = y[0];
17
- const y2 = y[1];
18
- const y3 = y[2];
19
- const y4 = y[3];
20
-
21
- // compute output
22
- output[0] = -E5.K1 * y1 - E5.K3 * y1 * y3;
23
- output[1] = E5.K1 * y1 - E5.K2 * y2 * y3;
24
- output[2] = E5.K1 * y1 - E5.K2 * y2 * y3 - E5.K3 * y1 * y3 + E5.K4 * y4;
25
- output[3] = E5.K3 * y1 * y3 - E5.K4 * y4;
26
- },
27
- tolerance: 1e-6,
28
- solutionColNames: ['y1', 'y2', 'y3', 'y4'],
29
- };
30
-
31
- export const e5ReferencePoint = new Float64Array([
32
- 0.1152903278711829E-290,
33
- 0.8867655517642120E-22,
34
- 0.8854814626268838E-22,
35
- 0,
36
- ]);
@@ -1,39 +0,0 @@
1
- /** High Irradiance Responses of photomorphogenesis (see https://archimede.uniba.it/~testset/problems/hires.php) */
2
- export const hires = {
3
- name: 'HIRES',
4
- arg: { name: 't', start: 0, finish: 321.8122, step: 0.01 },
5
- initial: [1, 0, 0, 0, 0, 0, 0, 0.0057],
6
- func: (t, y, output) => {
7
- // extract function values
8
- const y1 = y[0];
9
- const y2 = y[1];
10
- const y3 = y[2];
11
- const y4 = y[3];
12
- const y5 = y[4];
13
- const y6 = y[5];
14
- const y7 = y[6];
15
- const y8 = y[7];
16
- // compute output
17
- output[0] = -1.71 * y1 + 0.43 * y2 + 8.32 * y3 + 0.0007;
18
- output[1] = 1.71 * y1 - 8.75 * y2;
19
- output[2] = -10.03 * y3 + 0.43 * y4 + 0.035 * y5;
20
- output[3] = 8.32 * y2 + 1.71 * y3 - 1.12 * y4;
21
- output[4] = -1.745 * y5 + 0.43 * y6 + 0.43 * y7;
22
- output[5] = -280 * y6 * y8 + 0.69 * y4 + 1.71 * y5 - 0.43 * y6 + 0.69 * y7;
23
- output[6] = 280 * y6 * y8 - 1.81 * y7;
24
- output[7] = -280 * y6 * y8 + 1.81 * y7;
25
- },
26
- tolerance: 1e-10,
27
- solutionColNames: ['y1', 'y2', 'y3', 'y4', 'y5', 'y6', 'y7', 'y8'],
28
- }; // hires
29
- export const hiresReferencePoint = new Float64Array([
30
- 0.7371312573325668E-3,
31
- 0.1442485726316185E-3,
32
- 0.5888729740967575E-4,
33
- 0.1175651343283149E-2,
34
- 0.2386356198831331E-2,
35
- 0.6238968252742796E-2,
36
- 0.2849998395185769E-2,
37
- 0.2850001604814231E-2,
38
- ]);
39
- //# sourceMappingURL=hires.js.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"hires.js","sourceRoot":"","sources":["hires.ts"],"names":[],"mappings":"AAAA,mHAAmH;AACnH,MAAM,CAAC,MAAM,KAAK,GAAG;IACnB,IAAI,EAAE,OAAO;IACb,GAAG,EAAE,EAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAC;IACxD,OAAO,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC;IACtC,IAAI,EAAE,CAAC,CAAS,EAAE,CAAe,EAAE,MAAoB,EAAE,EAAE;QACzD,0BAA0B;QAC1B,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAEhB,iBAAiB;QACjB,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,GAAG,MAAM,CAAC;QACxD,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,CAAC;QAClC,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,GAAG,KAAK,GAAG,EAAE,CAAC;QACjD,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,CAAC;QAC9C,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,CAAC;QAChD,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,GAAG,EAAE,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,CAAC;QAC3E,MAAM,CAAC,CAAC,CAAC,GAAG,GAAG,GAAG,EAAE,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,CAAC;QACtC,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,GAAG,EAAE,GAAG,EAAE,GAAG,IAAI,GAAG,EAAE,CAAC;IACzC,CAAC;IACD,SAAS,EAAE,KAAK;IAChB,gBAAgB,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;CACnE,CAAC,CAAC,QAAQ;AAEX,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI,YAAY,CAAC;IAClD,qBAAqB;IACrB,qBAAqB;IACrB,qBAAqB;IACrB,qBAAqB;IACrB,qBAAqB;IACrB,qBAAqB;IACrB,qBAAqB;IACrB,qBAAqB;CACtB,CAAC,CAAC"}
@@ -1,40 +0,0 @@
1
- /** High Irradiance Responses of photomorphogenesis (see https://archimede.uniba.it/~testset/problems/hires.php) */
2
- export const hires = {
3
- name: 'HIRES',
4
- arg: {name: 't', start: 0, finish: 321.8122, step: 0.01},
5
- initial: [1, 0, 0, 0, 0, 0, 0, 0.0057],
6
- func: (t: number, y: Float64Array, output: Float64Array) => {
7
- // extract function values
8
- const y1 = y[0];
9
- const y2 = y[1];
10
- const y3 = y[2];
11
- const y4 = y[3];
12
- const y5 = y[4];
13
- const y6 = y[5];
14
- const y7 = y[6];
15
- const y8 = y[7];
16
-
17
- // compute output
18
- output[0] = -1.71 * y1 + 0.43 * y2 + 8.32 * y3 + 0.0007;
19
- output[1] = 1.71 * y1 - 8.75 * y2;
20
- output[2] = -10.03 * y3 + 0.43 * y4 + 0.035 * y5;
21
- output[3] = 8.32 * y2 + 1.71 * y3 - 1.12 * y4;
22
- output[4] = -1.745 * y5 + 0.43 * y6 + 0.43 * y7;
23
- output[5] = -280 * y6 * y8 + 0.69 * y4 + 1.71 * y5 - 0.43 * y6 + 0.69 * y7;
24
- output[6] = 280 * y6 * y8 - 1.81 * y7;
25
- output[7] = -280 * y6 * y8 + 1.81 * y7;
26
- },
27
- tolerance: 1e-10,
28
- solutionColNames: ['y1', 'y2', 'y3', 'y4', 'y5', 'y6', 'y7', 'y8'],
29
- }; // hires
30
-
31
- export const hiresReferencePoint = new Float64Array([
32
- 0.7371312573325668E-3,
33
- 0.1442485726316185E-3,
34
- 0.5888729740967575E-4,
35
- 0.1175651343283149E-2,
36
- 0.2386356198831331E-2,
37
- 0.6238968252742796E-2,
38
- 0.2849998395185769E-2,
39
- 0.2850001604814231E-2,
40
- ]);
@@ -1 +0,0 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,SAAS,EAAE,uBAAuB,EAAC,MAAM,aAAa,CAAC;AAC/D,OAAO,EAAC,KAAK,EAAE,mBAAmB,EAAC,MAAM,SAAS,CAAC;AACnD,OAAO,EAAC,KAAK,EAAE,mBAAmB,EAAC,MAAM,SAAS,CAAC;AACnD,OAAO,EAAC,KAAK,EAAE,mBAAmB,EAAC,MAAM,SAAS,CAAC;AACnD,OAAO,EAAC,EAAE,EAAE,gBAAgB,EAAC,MAAM,MAAM,CAAC;AAC1C,OAAO,EAAC,SAAS,EAAE,uBAAuB,EAAC,MAAM,aAAa,CAAC;AAE/D;;GAEG;AACH,MAAM,CAAC,MAAM,SAAS,GAAG;IACvB,SAAS;IACT,KAAK;IACL,KAAK;IACL,KAAK;IACL,EAAE;IACF,SAAS;CACV,CAAC;AAEF;;GAEG;AACH,MAAM,CAAC,MAAM,SAAS,GAAG;IACvB,uBAAuB;IACvB,mBAAmB;IACnB,mBAAmB;IACnB,mBAAmB;IACnB,gBAAgB;IAChB,uBAAuB;CACxB,CAAC;AAEF,OAAO,EAAC,SAAS,EAAc,MAAM,cAAc,CAAC;AAEpD,OAAO,EAAC,cAAc,EAAE,UAAU,EAAE,UAAU,EAAE,OAAO,EAAE,UAAU,EAAE,cAAc,EAAC,MAAM,mBAAmB,CAAC"}