diff-grok 1.2.0 → 1.3.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (624) hide show
  1. package/README.MD +56 -8
  2. package/dist/index.d.ts +6 -0
  3. package/{index.js → dist/index.js} +1 -0
  4. package/dist/index.js.map +1 -0
  5. package/dist/src/examples/basic-use.d.ts +10 -0
  6. package/dist/src/examples/basic-use.js.map +1 -0
  7. package/dist/src/examples/check-methods.d.ts +1 -0
  8. package/dist/src/examples/check-methods.js.map +1 -0
  9. package/dist/src/examples/corr-probs.d.ts +15 -0
  10. package/{src → dist/src}/examples/corr-probs.js +2 -2
  11. package/dist/src/examples/corr-probs.js.map +1 -0
  12. package/dist/src/examples/cyclic-model.d.ts +6 -0
  13. package/dist/src/examples/cyclic-model.js.map +1 -0
  14. package/dist/src/examples/e5.d.ts +15 -0
  15. package/dist/src/examples/e5.js.map +1 -0
  16. package/dist/src/examples/hires.d.ts +15 -0
  17. package/dist/src/examples/hires.js.map +1 -0
  18. package/dist/src/examples/index.d.ts +22 -0
  19. package/dist/src/examples/index.js.map +1 -0
  20. package/dist/src/examples/model-updates.d.ts +6 -0
  21. package/dist/src/examples/model-updates.js.map +1 -0
  22. package/dist/src/examples/orego.d.ts +15 -0
  23. package/dist/src/examples/orego.js.map +1 -0
  24. package/dist/src/examples/pipeline-use.d.ts +6 -0
  25. package/dist/src/examples/pipeline-use.js.map +1 -0
  26. package/dist/src/examples/pollution.d.ts +15 -0
  27. package/dist/src/examples/pollution.js.map +1 -0
  28. package/{src/examples/print-benchmark.ts → dist/src/examples/print-benchmark.d.ts} +8 -58
  29. package/dist/src/examples/print-benchmark.js.map +1 -0
  30. package/dist/src/examples/robertson.d.ts +15 -0
  31. package/{docs/media → dist/src/examples}/robertson.js +2 -2
  32. package/dist/src/examples/robertson.js.map +1 -0
  33. package/dist/src/examples/scripting.d.ts +1 -0
  34. package/dist/src/examples/scripting.js.map +1 -0
  35. package/dist/src/examples/vdpol.d.ts +15 -0
  36. package/dist/src/examples/vdpol.js.map +1 -0
  37. package/dist/src/latex-export/examples/advanced-to-latex.d.ts +2 -0
  38. package/dist/src/latex-export/examples/advanced-to-latex.js +41 -0
  39. package/dist/src/latex-export/examples/advanced-to-latex.js.map +1 -0
  40. package/dist/src/latex-export/examples/basic-to-latex.d.ts +2 -0
  41. package/dist/src/latex-export/examples/basic-to-latex.js +17 -0
  42. package/dist/src/latex-export/examples/basic-to-latex.js.map +1 -0
  43. package/dist/src/latex-export/examples/bioreactor-to-latex-selective.d.ts +2 -0
  44. package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js +145 -0
  45. package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js.map +1 -0
  46. package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.d.ts +2 -0
  47. package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js +41 -0
  48. package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js.map +1 -0
  49. package/dist/src/latex-export/examples/energy-n-control-to-markdown.d.ts +2 -0
  50. package/dist/src/latex-export/examples/energy-n-control-to-markdown.js +58 -0
  51. package/dist/src/latex-export/examples/energy-n-control-to-markdown.js.map +1 -0
  52. package/dist/src/latex-export/examples/extended-to-markdown.d.ts +2 -0
  53. package/dist/src/latex-export/examples/extended-to-markdown.js +37 -0
  54. package/dist/src/latex-export/examples/extended-to-markdown.js.map +1 -0
  55. package/dist/src/latex-export/examples/fermentation-to-latex.d.ts +2 -0
  56. package/dist/src/latex-export/examples/fermentation-to-latex.js +32 -0
  57. package/dist/src/latex-export/examples/fermentation-to-latex.js.map +1 -0
  58. package/dist/src/latex-export/examples/ga-production-to-markdown.d.ts +2 -0
  59. package/dist/src/latex-export/examples/ga-production-to-markdown.js +58 -0
  60. package/dist/src/latex-export/examples/ga-production-to-markdown.js.map +1 -0
  61. package/dist/src/latex-export/examples/nimotuzumab-to-latex.d.ts +2 -0
  62. package/dist/src/latex-export/examples/nimotuzumab-to-latex.js +53 -0
  63. package/dist/src/latex-export/examples/nimotuzumab-to-latex.js.map +1 -0
  64. package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.d.ts +2 -0
  65. package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js +50 -0
  66. package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js.map +1 -0
  67. package/dist/src/latex-export/examples/pk-to-markdown.d.ts +2 -0
  68. package/dist/src/latex-export/examples/pk-to-markdown.js +35 -0
  69. package/dist/src/latex-export/examples/pk-to-markdown.js.map +1 -0
  70. package/dist/src/latex-export/examples/pollution-to-latex.d.ts +2 -0
  71. package/dist/src/latex-export/examples/pollution-to-latex.js +141 -0
  72. package/dist/src/latex-export/examples/pollution-to-latex.js.map +1 -0
  73. package/dist/src/latex-export/examples/robertson-to-latex-no-meta.d.ts +2 -0
  74. package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js +25 -0
  75. package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js.map +1 -0
  76. package/dist/src/latex-export/generator/bracket-manager.d.ts +19 -0
  77. package/dist/src/latex-export/generator/bracket-manager.js +58 -0
  78. package/dist/src/latex-export/generator/bracket-manager.js.map +1 -0
  79. package/dist/src/latex-export/generator/document-builder.d.ts +13 -0
  80. package/dist/src/latex-export/generator/document-builder.js +433 -0
  81. package/dist/src/latex-export/generator/document-builder.js.map +1 -0
  82. package/dist/src/latex-export/generator/latex-generator.d.ts +26 -0
  83. package/dist/src/latex-export/generator/latex-generator.js +180 -0
  84. package/dist/src/latex-export/generator/latex-generator.js.map +1 -0
  85. package/dist/src/latex-export/index.d.ts +8 -0
  86. package/dist/src/latex-export/index.js +25 -0
  87. package/dist/src/latex-export/index.js.map +1 -0
  88. package/dist/src/latex-export/output/md-formatter.d.ts +16 -0
  89. package/dist/src/latex-export/output/md-formatter.js +27 -0
  90. package/dist/src/latex-export/output/md-formatter.js.map +1 -0
  91. package/dist/src/latex-export/output/tex-formatter.d.ts +5 -0
  92. package/dist/src/latex-export/output/tex-formatter.js +20 -0
  93. package/dist/src/latex-export/output/tex-formatter.js.map +1 -0
  94. package/dist/src/latex-export/parser/ast-parser.d.ts +7 -0
  95. package/dist/src/latex-export/parser/ast-parser.js +153 -0
  96. package/dist/src/latex-export/parser/ast-parser.js.map +1 -0
  97. package/dist/src/latex-export/parser/ivp-parser.d.ts +6 -0
  98. package/dist/src/latex-export/parser/ivp-parser.js +219 -0
  99. package/dist/src/latex-export/parser/ivp-parser.js.map +1 -0
  100. package/dist/src/latex-export/parser/line-joiner.d.ts +25 -0
  101. package/dist/src/latex-export/parser/line-joiner.js +80 -0
  102. package/dist/src/latex-export/parser/line-joiner.js.map +1 -0
  103. package/dist/src/latex-export/parser/tokenizer.d.ts +7 -0
  104. package/dist/src/latex-export/parser/tokenizer.js +143 -0
  105. package/dist/src/latex-export/parser/tokenizer.js.map +1 -0
  106. package/dist/src/latex-export/transformer/functions.d.ts +12 -0
  107. package/dist/src/latex-export/transformer/functions.js +47 -0
  108. package/dist/src/latex-export/transformer/functions.js.map +1 -0
  109. package/dist/src/latex-export/transformer/identifier.d.ts +23 -0
  110. package/dist/src/latex-export/transformer/identifier.js +194 -0
  111. package/dist/src/latex-export/transformer/identifier.js.map +1 -0
  112. package/dist/src/latex-export/transformer/operators.d.ts +9 -0
  113. package/dist/src/latex-export/transformer/operators.js +41 -0
  114. package/dist/src/latex-export/transformer/operators.js.map +1 -0
  115. package/dist/src/latex-export/types.d.ts +122 -0
  116. package/dist/src/latex-export/types.js +10 -0
  117. package/dist/src/latex-export/types.js.map +1 -0
  118. package/{src/pipeline/basic-pipeline-creator.ts → dist/src/pipeline/basic-pipeline-creator.d.ts} +11 -28
  119. package/dist/src/pipeline/basic-pipeline-creator.js.map +1 -0
  120. package/dist/src/pipeline/constants.d.ts +14 -0
  121. package/dist/src/pipeline/constants.js.map +1 -0
  122. package/dist/src/pipeline/index.d.ts +7 -0
  123. package/dist/src/pipeline/index.js.map +1 -0
  124. package/dist/src/pipeline/input.d.ts +3 -0
  125. package/dist/src/pipeline/input.js.map +1 -0
  126. package/dist/src/pipeline/loops-pipeline-creator.d.ts +124 -0
  127. package/dist/src/pipeline/loops-pipeline-creator.js.map +1 -0
  128. package/dist/src/pipeline/output.d.ts +10 -0
  129. package/{src → dist/src}/pipeline/output.js +1 -1
  130. package/dist/src/pipeline/output.js.map +1 -0
  131. package/dist/src/pipeline/pipeline-creator.d.ts +12 -0
  132. package/{src → dist/src}/pipeline/pipeline-creator.js +2 -0
  133. package/dist/src/pipeline/pipeline-creator.js.map +1 -0
  134. package/{src/pipeline/pipeline.ts → dist/src/pipeline/pipeline.d.ts} +10 -97
  135. package/dist/src/pipeline/pipeline.js.map +1 -0
  136. package/{src/pipeline/updates-pipeline-creator.ts → dist/src/pipeline/updates-pipeline-creator.d.ts} +15 -131
  137. package/dist/src/pipeline/updates-pipeline-creator.js.map +1 -0
  138. package/dist/src/scripting-tools/constants.d.ts +59 -0
  139. package/dist/src/scripting-tools/constants.js.map +1 -0
  140. package/dist/src/scripting-tools/index.d.ts +3 -0
  141. package/dist/src/scripting-tools/index.js.map +1 -0
  142. package/dist/src/scripting-tools/model-error.d.ts +10 -0
  143. package/{src → dist/src}/scripting-tools/model-error.js +2 -1
  144. package/dist/src/scripting-tools/model-error.js.map +1 -0
  145. package/dist/src/scripting-tools/scripting-tools.d.ts +277 -0
  146. package/{src → dist/src}/scripting-tools/scripting-tools.js +2 -4
  147. package/dist/src/scripting-tools/scripting-tools.js.map +1 -0
  148. package/dist/src/solver-tools/ab4-method.d.ts +46 -0
  149. package/{src → dist/src}/solver-tools/ab4-method.js +3 -3
  150. package/dist/src/solver-tools/ab4-method.js.map +1 -0
  151. package/dist/src/solver-tools/ab5-method.d.ts +46 -0
  152. package/{src → dist/src}/solver-tools/ab5-method.js +3 -3
  153. package/dist/src/solver-tools/ab5-method.js.map +1 -0
  154. package/dist/src/solver-tools/callbacks/callback-base.d.ts +8 -0
  155. package/dist/src/solver-tools/callbacks/callback-base.js.map +1 -0
  156. package/dist/src/solver-tools/callbacks/callback-tools.d.ts +6 -0
  157. package/dist/src/solver-tools/callbacks/callback-tools.js.map +1 -0
  158. package/dist/src/solver-tools/callbacks/iter-checker-callback.d.ts +12 -0
  159. package/{src → dist/src}/solver-tools/callbacks/iter-checker-callback.js +2 -0
  160. package/dist/src/solver-tools/callbacks/iter-checker-callback.js.map +1 -0
  161. package/dist/src/solver-tools/callbacks/time-checker-callback.d.ts +12 -0
  162. package/{src → dist/src}/solver-tools/callbacks/time-checker-callback.js +2 -2
  163. package/dist/src/solver-tools/callbacks/time-checker-callback.js.map +1 -0
  164. package/dist/src/solver-tools/cvode/common.d.ts +395 -0
  165. package/dist/src/solver-tools/cvode/common.js +483 -0
  166. package/dist/src/solver-tools/cvode/common.js.map +1 -0
  167. package/dist/src/solver-tools/cvode/cvode.d.ts +23 -0
  168. package/dist/src/solver-tools/cvode/cvode.js.map +1 -0
  169. package/dist/src/solver-tools/cvode/cvode_adams.d.ts +22 -0
  170. package/dist/src/solver-tools/cvode/cvode_adams.js.map +1 -0
  171. package/dist/src/solver-tools/cvode/cvode_bdf.d.ts +37 -0
  172. package/dist/src/solver-tools/cvode/cvode_bdf.js.map +1 -0
  173. package/dist/src/solver-tools/cvode/cvode_class.d.ts +116 -0
  174. package/{src → dist/src}/solver-tools/cvode/cvode_class.js +9 -4
  175. package/dist/src/solver-tools/cvode/cvode_class.js.map +1 -0
  176. package/dist/src/solver-tools/cvode/cvode_hin.d.ts +24 -0
  177. package/dist/src/solver-tools/cvode/cvode_hin.js.map +1 -0
  178. package/dist/src/solver-tools/cvode/cvode_io.d.ts +98 -0
  179. package/{src → dist/src}/solver-tools/cvode/cvode_io.js +1 -2
  180. package/dist/src/solver-tools/cvode/cvode_io.js.map +1 -0
  181. package/dist/src/solver-tools/cvode/cvode_ls.d.ts +23 -0
  182. package/dist/src/solver-tools/cvode/cvode_ls.js.map +1 -0
  183. package/dist/src/solver-tools/cvode/cvode_nls.d.ts +25 -0
  184. package/dist/src/solver-tools/cvode/cvode_nls.js.map +1 -0
  185. package/dist/src/solver-tools/cvode/cvode_root.d.ts +64 -0
  186. package/dist/src/solver-tools/cvode/cvode_root.js.map +1 -0
  187. package/dist/src/solver-tools/cvode/dense_linalg.d.ts +50 -0
  188. package/dist/src/solver-tools/cvode/dense_linalg.js.map +1 -0
  189. package/dist/src/solver-tools/cvode/index.d.ts +24 -0
  190. package/dist/src/solver-tools/cvode/index.js.map +1 -0
  191. package/dist/src/solver-tools/cvode-method.d.ts +47 -0
  192. package/dist/src/solver-tools/cvode-method.js.map +1 -0
  193. package/dist/src/solver-tools/index.d.ts +16 -0
  194. package/dist/src/solver-tools/index.js.map +1 -0
  195. package/dist/src/solver-tools/lin-alg-tools.d.ts +6 -0
  196. package/dist/src/solver-tools/lin-alg-tools.js.map +1 -0
  197. package/dist/src/solver-tools/lsoda/blas.d.ts +59 -0
  198. package/dist/src/solver-tools/lsoda/blas.js.map +1 -0
  199. package/{src/solver-tools/lsoda/index.ts → dist/src/solver-tools/lsoda/cfode.d.ts} +7 -6
  200. package/dist/src/solver-tools/lsoda/cfode.js.map +1 -0
  201. package/dist/src/solver-tools/lsoda/common.d.ts +85 -0
  202. package/dist/src/solver-tools/lsoda/common.js +96 -0
  203. package/dist/src/solver-tools/lsoda/common.js.map +1 -0
  204. package/{src/solver-tools/lsoda/corfailure.ts → dist/src/solver-tools/lsoda/corfailure.d.ts} +2 -26
  205. package/dist/src/solver-tools/lsoda/corfailure.js.map +1 -0
  206. package/dist/src/solver-tools/lsoda/correction.d.ts +23 -0
  207. package/dist/src/solver-tools/lsoda/correction.js.map +1 -0
  208. package/dist/src/solver-tools/lsoda/dense.d.ts +47 -0
  209. package/{src → dist/src}/solver-tools/lsoda/dense.js +2 -0
  210. package/dist/src/solver-tools/lsoda/dense.js.map +1 -0
  211. package/dist/src/solver-tools/lsoda/index.d.ts +16 -0
  212. package/dist/src/solver-tools/lsoda/index.js.map +1 -0
  213. package/dist/src/solver-tools/lsoda/intdy.d.ts +19 -0
  214. package/dist/src/solver-tools/lsoda/intdy.js.map +1 -0
  215. package/dist/src/solver-tools/lsoda/lsoda.d.ts +66 -0
  216. package/{src → dist/src}/solver-tools/lsoda/lsoda.js +13 -5
  217. package/dist/src/solver-tools/lsoda/lsoda.js.map +1 -0
  218. package/dist/src/solver-tools/lsoda/methodswitch.d.ts +21 -0
  219. package/dist/src/solver-tools/lsoda/methodswitch.js.map +1 -0
  220. package/dist/src/solver-tools/lsoda/orderswitch.d.ts +21 -0
  221. package/dist/src/solver-tools/lsoda/orderswitch.js.map +1 -0
  222. package/dist/src/solver-tools/lsoda/prja.d.ts +18 -0
  223. package/dist/src/solver-tools/lsoda/prja.js.map +1 -0
  224. package/dist/src/solver-tools/lsoda/scaleh.d.ts +16 -0
  225. package/dist/src/solver-tools/lsoda/scaleh.js.map +1 -0
  226. package/{src/solver-tools/lsoda/solsy.ts → dist/src/solver-tools/lsoda/solsy.d.ts} +2 -15
  227. package/dist/src/solver-tools/lsoda/solsy.js.map +1 -0
  228. package/dist/src/solver-tools/lsoda/stoda.d.ts +19 -0
  229. package/dist/src/solver-tools/lsoda/stoda.js.map +1 -0
  230. package/dist/src/solver-tools/lsoda-method.d.ts +46 -0
  231. package/dist/src/solver-tools/lsoda-method.js.map +1 -0
  232. package/dist/src/solver-tools/mrt-method.d.ts +47 -0
  233. package/{src → dist/src}/solver-tools/mrt-method.js +2 -2
  234. package/dist/src/solver-tools/mrt-method.js.map +1 -0
  235. package/dist/src/solver-tools/rk3-method.d.ts +46 -0
  236. package/{src → dist/src}/solver-tools/rk3-method.js +2 -2
  237. package/dist/src/solver-tools/rk3-method.js.map +1 -0
  238. package/dist/src/solver-tools/rk4-method.d.ts +46 -0
  239. package/{src → dist/src}/solver-tools/rk4-method.js +2 -2
  240. package/dist/src/solver-tools/rk4-method.js.map +1 -0
  241. package/dist/src/solver-tools/rkdp-method.d.ts +46 -0
  242. package/{src → dist/src}/solver-tools/rkdp-method.js +2 -2
  243. package/dist/src/solver-tools/rkdp-method.js.map +1 -0
  244. package/dist/src/solver-tools/ros34prw-method.d.ts +46 -0
  245. package/{src → dist/src}/solver-tools/ros34prw-method.js +2 -2
  246. package/dist/src/solver-tools/ros34prw-method.js.map +1 -0
  247. package/dist/src/solver-tools/ros3prw-method.d.ts +46 -0
  248. package/{src → dist/src}/solver-tools/ros3prw-method.js +2 -2
  249. package/dist/src/solver-tools/ros3prw-method.js.map +1 -0
  250. package/{src/solver-tools/solver-defs.ts → dist/src/solver-tools/solver-defs.d.ts} +45 -85
  251. package/dist/src/solver-tools/solver-defs.js.map +1 -0
  252. package/dist/src/worker-tools/index.d.ts +2 -0
  253. package/dist/src/worker-tools/index.js.map +1 -0
  254. package/{src/worker-tools/scripting.ts → dist/src/worker-tools/scripting.d.ts} +9 -91
  255. package/dist/src/worker-tools/scripting.js.map +1 -0
  256. package/dist/src/worker-tools/solving.d.ts +7 -0
  257. package/dist/src/worker-tools/solving.js.map +1 -0
  258. package/package.json +10 -11
  259. package/.claude/settings.local.json +0 -11
  260. package/.claude/skills/license-updater/SKILL.md +0 -149
  261. package/.claude/skills/license-updater/references/compatibility.md +0 -68
  262. package/.claude/skills/license-updater/references/templates.md +0 -151
  263. package/.claude/skills/license-updater/scripts/generate_license_files.py +0 -467
  264. package/.eslintrc.json +0 -45
  265. package/.github/ISSUE_TEMPLATE/bug_report.md +0 -29
  266. package/.github/ISSUE_TEMPLATE/feature_request.md +0 -20
  267. package/.github/PULL_REQUEST_TEMPLATE.md +0 -22
  268. package/.github/scripts/bump-js-api-version.sh +0 -106
  269. package/.github/scripts/check-output.sh +0 -20
  270. package/.github/scripts/iac-cfn-deploy.sh +0 -90
  271. package/.github/scripts/slack_api_request.sh +0 -65
  272. package/.github/scripts/test_package.sh +0 -270
  273. package/.github/workflows/deploy-docs.yml +0 -15
  274. package/.github/workflows/libraries.yaml +0 -305
  275. package/.github/workflows/test.yaml +0 -19
  276. package/CLAUDE.md +0 -104
  277. package/CONTRIBUTING.md +0 -74
  278. package/THIRD_PARTY_LICENSES +0 -135
  279. package/docs/.nojekyll +0 -1
  280. package/docs/assets/hierarchy.js +0 -1
  281. package/docs/assets/highlight.css +0 -99
  282. package/docs/assets/icons.js +0 -18
  283. package/docs/assets/icons.svg +0 -1
  284. package/docs/assets/main.js +0 -60
  285. package/docs/assets/navigation.js +0 -1
  286. package/docs/assets/search.js +0 -1
  287. package/docs/assets/style.css +0 -1633
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@@ -0,0 +1,12 @@
1
+ import { Callback } from './callback-base';
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+ /** This callback terminates computations if the maximum iterations is exceeded */
3
+ export declare class IterCheckerCallback extends Callback {
4
+ private maxIter;
5
+ private currentIter;
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+ /**
7
+ * @param maxIter - the maximum number of iterations
8
+ */
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+ constructor(maxIter: number);
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+ /** Action performed on iteration start of numerical method */
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+ onIterationStart(): void;
12
+ }
@@ -2,6 +2,8 @@ import { Callback } from './callback-base';
2
2
  import { CallbackAction } from '../solver-defs';
3
3
  /** This callback terminates computations if the maximum iterations is exceeded */
4
4
  export class IterCheckerCallback extends Callback {
5
+ maxIter;
6
+ currentIter;
5
7
  /**
6
8
  * @param maxIter - the maximum number of iterations
7
9
  */
@@ -0,0 +1 @@
1
+ {"version":3,"file":"iter-checker-callback.js","sourceRoot":"","sources":["../../../../src/solver-tools/callbacks/iter-checker-callback.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,QAAQ,EAAC,MAAM,iBAAiB,CAAC;AACzC,OAAO,EAAC,cAAc,EAAC,MAAM,gBAAgB,CAAC;AAE9C,kFAAkF;AAClF,MAAM,OAAO,mBAAoB,SAAQ,QAAQ;IACvC,OAAO,CAAS;IAChB,WAAW,CAAS;IAE5B;;OAEG;IACH,YAAY,OAAe;QACzB,KAAK,EAAE,CAAC;QACR,IAAI,CAAC,OAAO,GAAG,OAAO,CAAC;QACvB,IAAI,CAAC,WAAW,GAAG,CAAC,CAAC;IACvB,CAAC;IAED,8DAA8D;IACvD,gBAAgB;QACrB,EAAE,IAAI,CAAC,WAAW,CAAC;QAEnB,IAAI,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC,OAAO;YACjC,MAAM,IAAI,cAAc,CAAC,kCAAkC,IAAI,CAAC,OAAO,GAAG,CAAC,CAAC;IAChF,CAAC;CACF"}
@@ -0,0 +1,12 @@
1
+ import { Callback } from './callback-base';
2
+ /** This callback terminates computations if the maximum calculation time is exceeded */
3
+ export declare class TimeCheckerCallback extends Callback {
4
+ private maxTime;
5
+ private startingTime;
6
+ /**
7
+ * @param maxTime - the maximum time of computations
8
+ */
9
+ constructor(maxTime: number);
10
+ /** The action performed at the start of numerical method iteration */
11
+ onIterationStart(): void;
12
+ }
@@ -2,13 +2,13 @@ import { Callback } from './callback-base';
2
2
  import { CallbackAction } from '../solver-defs';
3
3
  /** This callback terminates computations if the maximum calculation time is exceeded */
4
4
  export class TimeCheckerCallback extends Callback {
5
+ maxTime = 0;
6
+ startingTime = 0;
5
7
  /**
6
8
  * @param maxTime - the maximum time of computations
7
9
  */
8
10
  constructor(maxTime) {
9
11
  super();
10
- this.maxTime = 0;
11
- this.startingTime = 0;
12
12
  this.maxTime = maxTime;
13
13
  this.startingTime = performance.now();
14
14
  }
@@ -0,0 +1 @@
1
+ {"version":3,"file":"time-checker-callback.js","sourceRoot":"","sources":["../../../../src/solver-tools/callbacks/time-checker-callback.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,QAAQ,EAAC,MAAM,iBAAiB,CAAC;AACzC,OAAO,EAAC,cAAc,EAAC,MAAM,gBAAgB,CAAC;AAE9C,wFAAwF;AACxF,MAAM,OAAO,mBAAoB,SAAQ,QAAQ;IACvC,OAAO,GAAG,CAAC,CAAC;IACZ,YAAY,GAAG,CAAC,CAAC;IAEzB;;OAEG;IACH,YAAY,OAAe;QACzB,KAAK,EAAE,CAAC;QACR,IAAI,CAAC,OAAO,GAAG,OAAO,CAAC;QACvB,IAAI,CAAC,YAAY,GAAG,WAAW,CAAC,GAAG,EAAE,CAAC;IACxC,CAAC;IAED,sEAAsE;IAC/D,gBAAgB;QACrB,IAAI,WAAW,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,OAAO;YACtD,MAAM,IAAI,cAAc,CAAC,sBAAsB,IAAI,CAAC,OAAO,MAAM,CAAC,CAAC;IACvE,CAAC;CACF"}
@@ -0,0 +1,395 @@
1
+ /**
2
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
3
+ *
4
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
5
+ * Maryland Baltimore County, and the SUNDIALS contributors.
6
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
7
+ * Southern Methodist University.
8
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
9
+ * Copyright (c) 2026 Datagrok.
10
+ *
11
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
12
+ * for the full license text and provenance chain of the original code.
13
+ */
14
+ export declare const ADAMS_Q_MAX = 12;
15
+ export declare const BDF_Q_MAX = 5;
16
+ export declare const Q_MAX = 12;
17
+ export declare const L_MAX = 13;
18
+ export declare const NUM_TESTS = 5;
19
+ export declare const CV_ADAMS = 1;
20
+ export declare const CV_BDF = 2;
21
+ export declare const CV_NORMAL = 1;
22
+ export declare const CV_ONE_STEP = 2;
23
+ export declare const CV_SUCCESS = 0;
24
+ export declare const CV_TSTOP_RETURN = 1;
25
+ export declare const CV_ROOT_RETURN = 2;
26
+ export declare const CV_TOO_MUCH_WORK = -1;
27
+ export declare const CV_TOO_MUCH_ACC = -2;
28
+ export declare const CV_ERR_FAILURE = -3;
29
+ export declare const CV_CONV_FAILURE = -4;
30
+ export declare const CV_RHSFUNC_FAIL = -8;
31
+ export declare const CV_FIRST_RHSFUNC_ERR = -9;
32
+ export declare const CV_RTFUNC_FAIL = -12;
33
+ export declare const CV_TOO_CLOSE = -27;
34
+ export declare const HMIN_DEFAULT = 0;
35
+ export declare const HMAX_INV_DEFAULT = 0;
36
+ export declare const MXHNIL_DEFAULT = 10;
37
+ export declare const MXSTEP_DEFAULT = 500;
38
+ export declare const MSBP_DEFAULT = 20;
39
+ export declare const DGMAX_LSETUP_DEFAULT = 0.3;
40
+ export declare const ETA_MIN_FX_DEFAULT = 0;
41
+ export declare const ETA_MAX_FX_DEFAULT = 1.5;
42
+ export declare const ETA_MAX_FS_DEFAULT = 10000;
43
+ export declare const ETA_MAX_ES_DEFAULT = 10;
44
+ export declare const ETA_MAX_GS_DEFAULT = 10;
45
+ export declare const ETA_MIN_DEFAULT = 0.1;
46
+ export declare const ETA_MAX_EF_DEFAULT = 0.2;
47
+ export declare const ETA_MIN_EF_DEFAULT = 0.1;
48
+ export declare const ETA_CF_DEFAULT = 0.25;
49
+ export declare const SMALL_NST_DEFAULT = 10;
50
+ export declare const SMALL_NEF_DEFAULT = 2;
51
+ export declare const ONEPSM = 1.000001;
52
+ export declare const ADDON = 0.000001;
53
+ export declare const BIAS1 = 6;
54
+ export declare const BIAS2 = 6;
55
+ export declare const BIAS3 = 10;
56
+ export declare const LONG_WAIT = 10;
57
+ export declare const MXNCF = 10;
58
+ export declare const MXNEF = 7;
59
+ export declare const MXNEF1 = 3;
60
+ export declare const DO_ERROR_TEST = 2;
61
+ export declare const PREDICT_AGAIN = 3;
62
+ export declare const TRY_AGAIN = 5;
63
+ export declare const FIRST_CALL = 6;
64
+ export declare const PREV_CONV_FAIL = 7;
65
+ export declare const PREV_ERR_FAIL = 9;
66
+ export declare const RHSFUNC_RECVR = 10;
67
+ export declare const CV_NN = 0;
68
+ export declare const CV_SS = 1;
69
+ export declare const CV_SV = 2;
70
+ export declare const CV_NO_FAILURES = 0;
71
+ export declare const CV_FAIL_BAD_J = 1;
72
+ export declare const CV_FAIL_OTHER = 2;
73
+ export declare const FUZZ_FACTOR = 100;
74
+ export declare const HLB_FACTOR = 100;
75
+ export declare const HUB_FACTOR = 0.1;
76
+ export declare const H_BIAS = 0.5;
77
+ export declare const MAX_ITERS = 4;
78
+ export declare const CORTES = 0.1;
79
+ export declare const TINY = 1e-10;
80
+ export declare const NLS_MAXCOR = 3;
81
+ export declare const CRDOWN = 0.3;
82
+ export declare const RDIV = 2;
83
+ export declare const SUN_NLS_CONTINUE = 901;
84
+ export declare const SUN_NLS_CONV_RECVR = 902;
85
+ export declare const CV_LSETUP_FAIL = -13;
86
+ export declare const CV_LSOLVE_FAIL = -14;
87
+ export declare const CV_UNREC_RHSFUNC_ERR = -10;
88
+ export declare const CV_REPTD_RHSFUNC_ERR = -11;
89
+ export declare const CV_LINIT_FAIL = -31;
90
+ export declare const CV_NLS_INIT_FAIL = -32;
91
+ export declare const CV_NLS_FAIL = -33;
92
+ export declare const UROUND = 2.220446049250313e-16;
93
+ export declare const RTFOUND = 1;
94
+ export declare const CLOSERT = 3;
95
+ export declare const CVLS_MSBJ = 51;
96
+ export declare const CVLS_DGMAX = 0.2;
97
+ /** RHS function: y' = f(t, y). Returns 0 on success, non-zero on failure. */
98
+ export type CvodeRhsFn = (t: number, y: Float64Array, ydot: Float64Array, userData: any) => number;
99
+ /** Jacobian function: J = df/dy. Returns 0 on success, non-zero on failure. */
100
+ export type CvodeJacFn = (t: number, y: Float64Array, fy: Float64Array, J: Float64Array[], userData: any) => number;
101
+ /** Root function: g(t, y). Returns 0 on success, non-zero on failure. */
102
+ export type CvodeRootFn = (t: number, y: Float64Array, gout: Float64Array, userData: any) => number;
103
+ export declare class CvLsMem {
104
+ /** N x N Jacobian matrix (row-major) */
105
+ A: Float64Array[];
106
+ /** LU pivot indices */
107
+ pivots: Int32Array;
108
+ /** Saved copy of Jacobian */
109
+ savedJ: Float64Array[];
110
+ /** User-supplied Jacobian function */
111
+ jacFn: CvodeJacFn | null;
112
+ /** Use difference-quotient Jacobian by default */
113
+ jacDQ: boolean;
114
+ /** Number of Jacobian evaluations */
115
+ nje: number;
116
+ /** Number of f evaluations for DQ Jacobian */
117
+ nfeDQ: number;
118
+ /** nst at last Jacobian evaluation */
119
+ nstlj: number;
120
+ /** t at last Jacobian evaluation */
121
+ tnlj: number;
122
+ /** Max steps between Jacobian evaluations (CVLS_MSBJ) */
123
+ msbj: number;
124
+ /** Gamma change threshold (CVLS_DGMAX) */
125
+ dgmax_jbad: number;
126
+ /** Is Jacobian stale? */
127
+ jbad: boolean;
128
+ }
129
+ export declare class CvodeMem {
130
+ /** RHS function: y' = f(t, y) */
131
+ cv_f: CvodeRhsFn | null;
132
+ /** User data passed to f, jac, root functions */
133
+ cv_user_data: any;
134
+ /** Linear multistep method: CV_ADAMS or CV_BDF */
135
+ cv_lmm: number;
136
+ /** Tolerance type: CV_NN, CV_SS, or CV_SV */
137
+ cv_itol: number;
138
+ /** Relative tolerance */
139
+ cv_reltol: number;
140
+ /** Scalar absolute tolerance */
141
+ cv_Sabstol: number;
142
+ /** Vector absolute tolerance */
143
+ cv_Vabstol: Float64Array;
144
+ /** Flag: is min(atol) == 0? */
145
+ cv_atolmin0: boolean;
146
+ /** Nordsieck array: cv_zn[j][i], j=0..q, i=0..N-1 */
147
+ cv_zn: Float64Array[];
148
+ /** Error weight vector */
149
+ cv_ewt: Float64Array;
150
+ /** Solution vector (scratch for user output) */
151
+ cv_y: Float64Array;
152
+ /** Accumulated correction */
153
+ cv_acor: Float64Array;
154
+ /** Temporary vector */
155
+ cv_tempv: Float64Array;
156
+ /** Temporary for f evaluations */
157
+ cv_ftemp: Float64Array;
158
+ /** Temporary vector 1 */
159
+ cv_vtemp1: Float64Array;
160
+ /** Temporary vector 2 */
161
+ cv_vtemp2: Float64Array;
162
+ /** Temporary vector 3 */
163
+ cv_vtemp3: Float64Array;
164
+ /** Is tstop set? */
165
+ cv_tstopset: boolean;
166
+ /** Interpolate at tstop? */
167
+ cv_tstopinterp: boolean;
168
+ /** Stop time */
169
+ cv_tstop: number;
170
+ /** Current method order */
171
+ cv_q: number;
172
+ /** Order for next step */
173
+ cv_qprime: number;
174
+ /** Next order to be used (during step) */
175
+ cv_next_q: number;
176
+ /** Steps remaining before order change allowed */
177
+ cv_qwait: number;
178
+ /** L = q + 1 */
179
+ cv_L: number;
180
+ /** Initial step size (user-supplied) */
181
+ cv_hin: number;
182
+ /** Current step size */
183
+ cv_h: number;
184
+ /** Step size for next step */
185
+ cv_hprime: number;
186
+ /** Next h (during step) */
187
+ cv_next_h: number;
188
+ /** Step size ratio: hprime / h */
189
+ cv_eta: number;
190
+ /** Step size at last Nordsieck rescale */
191
+ cv_hscale: number;
192
+ /** Current internal time */
193
+ cv_tn: number;
194
+ /** Last return time */
195
+ cv_tretlast: number;
196
+ /** Step size history: tau[i], i=0..L_MAX */
197
+ cv_tau: Float64Array;
198
+ /** Error test quantities: tq[i], i=0..NUM_TESTS */
199
+ cv_tq: Float64Array;
200
+ /** Polynomial coefficients: l[i], i=0..L_MAX-1 */
201
+ cv_l: Float64Array;
202
+ /** 1 / l[1] */
203
+ cv_rl1: number;
204
+ /** gamma = h * rl1 */
205
+ cv_gamma: number;
206
+ /** gamma at last setup */
207
+ cv_gammap: number;
208
+ /** gamma / gammap */
209
+ cv_gamrat: number;
210
+ /** NLS convergence rate estimate */
211
+ cv_crate: number;
212
+ /** Previous del value (NLS) */
213
+ cv_delp: number;
214
+ /** WRMS norm of accumulated correction */
215
+ cv_acnrm: number;
216
+ /** Current acnrm (during step) */
217
+ cv_acnrmcur: boolean;
218
+ /** NLS convergence coefficient */
219
+ cv_nlscoef: number;
220
+ /** Max method order */
221
+ cv_qmax: number;
222
+ /** Max internal steps per call */
223
+ cv_mxstep: number;
224
+ /** Max t+h==t warnings */
225
+ cv_mxhnil: number;
226
+ /** Max error test failures per step */
227
+ cv_maxnef: number;
228
+ /** Max convergence failures per step */
229
+ cv_maxncf: number;
230
+ /** Min step size */
231
+ cv_hmin: number;
232
+ /** 1/hmax (inverse of max step size) */
233
+ cv_hmax_inv: number;
234
+ /** Max eta for step size increase */
235
+ cv_etamax: number;
236
+ /** Min fixed eta threshold */
237
+ cv_eta_min_fx: number;
238
+ /** Max fixed eta threshold */
239
+ cv_eta_max_fx: number;
240
+ /** Max eta on first step */
241
+ cv_eta_max_fs: number;
242
+ /** Max eta on early steps */
243
+ cv_eta_max_es: number;
244
+ /** Max eta on general steps */
245
+ cv_eta_max_gs: number;
246
+ /** Min eta */
247
+ cv_eta_min: number;
248
+ /** Min eta on error failure */
249
+ cv_eta_min_ef: number;
250
+ /** Max eta on error failure */
251
+ cv_eta_max_ef: number;
252
+ /** Eta on convergence failure */
253
+ cv_eta_cf: number;
254
+ /** Small step count threshold */
255
+ cv_small_nst: number;
256
+ /** Small error failure threshold */
257
+ cv_small_nef: number;
258
+ /** Total internal steps taken */
259
+ cv_nst: number;
260
+ /** Total RHS evaluations */
261
+ cv_nfe: number;
262
+ /** Convergence failures */
263
+ cv_ncfn: number;
264
+ /** Nonlinear iterations */
265
+ cv_nni: number;
266
+ /** Nonlinear iteration failures */
267
+ cv_nnf: number;
268
+ /** Error test failures */
269
+ cv_netf: number;
270
+ /** Linear solver setups */
271
+ cv_nsetups: number;
272
+ /** t+h==t warnings */
273
+ cv_nhnil: number;
274
+ /** Eta for order q-1 */
275
+ cv_etaqm1: number;
276
+ /** Eta for order q */
277
+ cv_etaq: number;
278
+ /** Eta for order q+1 */
279
+ cv_etaqp1: number;
280
+ /** Linear solver init function */
281
+ cv_linit: ((mem: CvodeMem) => number) | null;
282
+ /** Linear solver setup function */
283
+ cv_lsetup: ((mem: CvodeMem, convfail: number, ypred: Float64Array, fpred: Float64Array, jcurPtr: {
284
+ value: boolean;
285
+ }, tmp1: Float64Array, tmp2: Float64Array, tmp3: Float64Array) => number) | null;
286
+ /** Linear solver solve function */
287
+ cv_lsolve: ((mem: CvodeMem, b: Float64Array, weight: Float64Array, ycur: Float64Array, fcur: Float64Array) => number) | null;
288
+ /** Linear solver free function */
289
+ cv_lfree: ((mem: CvodeMem) => void) | null;
290
+ /** Linear solver memory */
291
+ cv_lmem: CvLsMem | null;
292
+ /** Max steps between Jacobian setups */
293
+ cv_msbp: number;
294
+ /** Gamma change threshold for Jacobian redo */
295
+ cv_dgmax_lsetup: number;
296
+ /** Order used on last successful step */
297
+ cv_qu: number;
298
+ /** nst at last Jacobian setup */
299
+ cv_nstlp: number;
300
+ /** Initial step size actually used */
301
+ cv_h0u: number;
302
+ /** Step size used on last successful step */
303
+ cv_hu: number;
304
+ /** Saved tq[5] for order selection */
305
+ cv_saved_tq5: number;
306
+ /** Is Jacobian current? */
307
+ cv_jcur: boolean;
308
+ /** Tolerance scale factor */
309
+ cv_tolsf: number;
310
+ /** Max order allocated in Nordsieck array */
311
+ cv_qmax_alloc: number;
312
+ /** Index of acor in zn array */
313
+ cv_indx_acor: number;
314
+ /** Has CvodeMem been allocated/initialized? */
315
+ cv_MallocDone: boolean;
316
+ /** Has vector abstol been allocated? */
317
+ cv_VabstolMallocDone: boolean;
318
+ /** Enable stability limit detection? */
319
+ cv_sldeton: boolean;
320
+ /** Stability data: ssdat[6][4] (6 rows, 4 cols) */
321
+ cv_ssdat: number[][];
322
+ /** Steps since stability check */
323
+ cv_nscon: number;
324
+ /** Order flag for stability */
325
+ cv_nor: number;
326
+ /** Root function */
327
+ cv_gfun: CvodeRootFn | null;
328
+ /** Number of root functions */
329
+ cv_nrtfn: number;
330
+ /** Root direction info (which roots were found) */
331
+ cv_iroots: Int32Array;
332
+ /** Root direction constraints */
333
+ cv_rootdir: Int32Array;
334
+ /** t at low end of bracket */
335
+ cv_tlo: number;
336
+ /** t at high end of bracket */
337
+ cv_thi: number;
338
+ /** t at root */
339
+ cv_trout: number;
340
+ /** g values at low end */
341
+ cv_glo: Float64Array;
342
+ /** g values at high end */
343
+ cv_ghi: Float64Array;
344
+ /** g values at root */
345
+ cv_grout: Float64Array;
346
+ /** Output time saved for root check */
347
+ cv_toutc: number;
348
+ /** Root time tolerance */
349
+ cv_ttol: number;
350
+ /** Task flag for root check */
351
+ cv_taskc: number;
352
+ /** Root found on previous step? */
353
+ cv_irfnd: number;
354
+ /** Number of g evaluations */
355
+ cv_nge: number;
356
+ /** Active root functions flags */
357
+ cv_gactive: Uint8Array;
358
+ /** Max steps with g inactive before declaring permanently inactive */
359
+ cv_mxgnull: number;
360
+ /** Convergence failure type (CV_NO_FAILURES, CV_FAIL_BAD_J, CV_FAIL_OTHER) */
361
+ convfail: number;
362
+ /** Error message string */
363
+ cv_error: string;
364
+ /** Number of equations */
365
+ cv_N: number;
366
+ /** First step after problem resize */
367
+ first_step_after_resize: boolean;
368
+ }
369
+ /**
370
+ * Weighted root-mean-square norm.
371
+ * Returns sqrt(sum((v[i]*w[i])^2) / n) for i = 0..n-1.
372
+ */
373
+ export declare function wrmsNorm(n: number, v: Float64Array, w: Float64Array): number;
374
+ /**
375
+ * Linear combination of two vectors: z[i] = a*x[i] + b*y[i] for i = 0..n-1.
376
+ */
377
+ export declare function vLinearSum(a: number, x: Float64Array, b: number, y: Float64Array, z: Float64Array, n: number): void;
378
+ /**
379
+ * Scale a vector: z[i] = c * x[i] for i = 0..n-1.
380
+ */
381
+ export declare function vScale(c: number, x: Float64Array, z: Float64Array, n: number): void;
382
+ /**
383
+ * Set all elements of a vector to a constant: z[i] = c for i = 0..n-1.
384
+ */
385
+ export declare function vConst(c: number, z: Float64Array, n: number): void;
386
+ /**
387
+ * Dense output interpolation from the Nordsieck history array.
388
+ *
389
+ * Computes the k-th derivative of the interpolating polynomial at time t:
390
+ * dky = sum_{j=k}^{q} c(j,k) * s^(j-k) * h^(-k) * zn[j]
391
+ * where s = (t - tn) / h, c(j,k) = j*(j-1)*...*(j-k+1).
392
+ *
393
+ * @returns 0 on success, -1 on invalid input.
394
+ */
395
+ export declare function cvodeGetDky(mem: CvodeMem, t: number, k: number, dky: Float64Array): number;