diff-grok 1.2.0 → 1.3.1

package/dist/src/solver-tools/cvode/cvode_adams.js.map

@@ -0,0 +1 @@
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package/dist/src/solver-tools/cvode/cvode_bdf.d.ts

@@ -0,0 +1,37 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { CvodeMem } from './common';
+/**
+ * cvSetBDF - Compute BDF method coefficients l[] and tq[]
+ *
+ * The polynomial l(x) = l_0 + l_1*x + ... + l_q*x^q is given by:
+ *   Lambda(x) = (1 + x/xi*_q) * product_{i=1}^{q-1} (1 + x/xi_i)
+ * where xi_i = (t_n - t_{n-i}) / h
+ *
+ * The tq array holds test quantities for error and convergence tests:
+ *   tq[1] = coefficient for error at order q-1
+ *   tq[2] = coefficient for error at order q
+ *   tq[3] = coefficient for error at order q+1
+ *   tq[4] = convergence test coefficient
+ *   tq[5] = derivative for order q+2 vector
+ */
+export declare function cvSetBDF(mem: CvodeMem): void;
+/**
+ * cvIncreaseBDF - Adjust history array for BDF order increase
+ */
+export declare function cvIncreaseBDF(mem: CvodeMem): void;
+/**
+ * cvDecreaseBDF - Adjust history array for BDF order decrease
+ */
+export declare function cvDecreaseBDF(mem: CvodeMem): void;

package/dist/src/solver-tools/cvode/cvode_bdf.js.map

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package/dist/src/solver-tools/cvode/cvode_class.d.ts

@@ -0,0 +1,116 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { CvodeStats } from './cvode_io';
+/**
+ * User ODE function: y' = f(t, y).
+ * Arrays are 0-based. Return value is void; wrapping to int is done internally.
+ */
+export type OdeFunction = (t: number, y: Float64Array, ydot: Float64Array) => void;
+/**
+ * Options for the Cvode solver.
+ */
+export interface CvodeOptions {
+    /** Linear multistep method: 'adams' (non-stiff) or 'bdf' (stiff). Default: 'bdf'. */
+    lmm?: 'adams' | 'bdf';
+    /** Relative tolerance. Default: 1e-4. */
+    rtol?: number;
+    /** Absolute tolerance: scalar or per-component array. Default: 1e-6. */
+    atol?: number | Float64Array;
+    /** Maximum number of internal steps per cvode() call. */
+    maxSteps?: number;
+    /** Maximum method order. */
+    maxOrder?: number;
+    /** Maximum step size (0 = no limit). */
+    maxStep?: number;
+    /** Minimum step size. */
+    minStep?: number;
+    /** Initial step size (0 = auto-select). */
+    initStep?: number;
+    /** Stop time: integration will not proceed past this value. */
+    stopTime?: number;
+    /** Root function: g(t, y, gout). */
+    rootFn?: (t: number, y: Float64Array, gout: Float64Array) => void;
+    /** Number of root functions (required when rootFn is provided). */
+    nRootFns?: number;
+    /** User-supplied Jacobian function: J = df/dy. */
+    jacFn?: (t: number, y: Float64Array, fy: Float64Array, J: Float64Array[]) => void;
+    /** Arbitrary user data (passed as context, not forwarded to callbacks). */
+    userData?: any;
+}
+/**
+ * Result returned by solve() and step().
+ */
+export interface CvodeSolveResult {
+    /** Time reached by the solver. */
+    t: number;
+    /** Solution vector at time t (0-based, copy). */
+    y: Float64Array;
+    /** Solver flag (CV_SUCCESS=0, CV_ROOT_RETURN=2, CV_TSTOP_RETURN=1, negative=error). */
+    flag: number;
+    /** Root indices found when flag === CV_ROOT_RETURN. */
+    rootsFound?: Int32Array;
+}
+/**
+ * High-level CVODE solver class with a 0-based public interface.
+ *
+ * Usage:
+ *   const solver = new Cvode(f, neq, t0, y0, { lmm: 'bdf', rtol: 1e-6, atol: 1e-9 });
+ *   const result = solver.solve(tout);
+ */
+export declare class Cvode {
+    private mem;
+    private neq;
+    /** Output vector reused across calls (0-based, neq elements). */
+    private yout;
+    /** Wrapped RHS stored to allow re-initialization. */
+    private wrappedF;
+    constructor(f: OdeFunction, neq: number, t0: number, y0: Float64Array, options?: CvodeOptions);
+    /**
+     * Integrate from the current time to tout using CV_NORMAL mode
+     * (integrator advances to tout and interpolates).
+     *
+     * @param tout - target output time
+     * @returns CvodeSolveResult with { t, y, flag, rootsFound? }
+     */
+    solve(tout: number): CvodeSolveResult;
+    /**
+     * Take a single internal step using CV_ONE_STEP mode.
+     * The solver advances by one internal step of whatever size it chooses.
+     *
+     * @returns CvodeSolveResult with { t, y, flag, rootsFound? }
+     */
+    step(): CvodeSolveResult;
+    /**
+     * Dense output: compute the k-th derivative of the interpolating polynomial
+     * at time t using the current Nordsieck history array.
+     *
+     * @param t - interpolation time (must be within the last step interval)
+     * @param k - derivative order (0 = solution, 1 = first derivative, ...)
+     * @returns copy of the interpolated vector (length neq)
+     */
+    getDky(t: number, k: number): Float64Array;
+    /**
+     * Return current integrator statistics.
+     */
+    getStats(): CvodeStats;
+    /**
+     * Re-initialize the solver for a new initial-value problem with the same
+     * ODE function and options. Resets internal state and counters.
+     *
+     * @param t0 - new initial time
+     * @param y0 - new initial conditions (length neq)
+     */
+    reInit(t0: number, y0: Float64Array): void;
+    private _buildResult;
+}

package/{src → dist/src}/solver-tools/cvode/cvode_class.js

@@ -29,11 +29,16 @@ import { cvodeGetIntegratorStats, cvodeSStolerances, cvodeSVtolerances, cvodeSet
  *   const result = solver.solve(tout);
  */
 export class Cvode {
+    mem;
+    neq;
+    /** Output vector reused across calls (0-based, neq elements). */
+    yout;
+    /** Wrapped RHS stored to allow re-initialization. */
+    wrappedF;
     constructor(f, neq, t0, y0, options) {
-        var _a, _b;
         this.neq = neq;
         this.yout = new Float64Array(neq);
-        const opts = options !== null && options !== void 0 ? options : {};
+        const opts = options ?? {};
         // --- 1. Create CvodeMem ---
         const lmmValue = (opts.lmm === 'adams') ? CV_ADAMS : CV_BDF;
         this.mem = cvodeCreate(lmmValue);
@@ -45,8 +50,8 @@ export class Cvode {
         // --- 3. Initialize ---
         cvodeInit(this.mem, this.wrappedF, t0, y0);
         // --- 4. Set tolerances ---
-        const rtol = (_a = opts.rtol) !== null && _a !== void 0 ? _a : 1e-4;
-        const atol = (_b = opts.atol) !== null && _b !== void 0 ? _b : 1e-6;
+        const rtol = opts.rtol ?? 1e-4;
+        const atol = opts.atol ?? 1e-6;
         if (typeof atol === 'number')
             cvodeSStolerances(this.mem, rtol, atol);
         else

package/dist/src/solver-tools/cvode/cvode_class.js.map

@@ -0,0 +1 @@
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package/dist/src/solver-tools/cvode/cvode_hin.d.ts

@@ -0,0 +1,24 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { CvodeMem } from './common';
+/**
+ * cvHin - Compute initial step size h0.
+ *
+ * The algorithm:
+ * 1. Compute a bound hub on |h| from ydot and tdist
+ * 2. Set hlb = HLB_FACTOR * tround  (lower bound)
+ * 3. Iterate to estimate ||y''|| and compute h candidates
+ * 4. h0 = H_BIAS * geometric mean of hlb and hub candidates
+ */
+export declare function cvHin(mem: CvodeMem, tout: number): number;

package/dist/src/solver-tools/cvode/cvode_hin.js.map

@@ -0,0 +1 @@
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package/dist/src/solver-tools/cvode/cvode_io.d.ts

@@ -0,0 +1,98 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { CvodeMem } from './common';
+export interface CvodeStats {
+    nSteps: number;
+    nRhsEvals: number;
+    nLinSolvSetups: number;
+    nErrTestFails: number;
+    nNonlinSolvIters: number;
+    nNonlinSolvConvFails: number;
+    nJacEvals: number;
+    nGEvals: number;
+    lastOrder: number;
+    lastStep: number;
+    currentTime: number;
+}
+/**
+ * Set scalar relative and absolute tolerances.
+ * Requires rtol >= 0 and atol >= 0.
+ */
+export declare function cvodeSStolerances(mem: CvodeMem, rtol: number, atol: number): number;
+/**
+ * Set scalar relative tolerance and vector absolute tolerance.
+ * Requires rtol >= 0 and all atol[i] >= 0.
+ */
+export declare function cvodeSVtolerances(mem: CvodeMem, rtol: number, atol: Float64Array): number;
+/**
+ * Set the maximum number of internal steps per call to CVode.
+ */
+export declare function cvodeSetMaxNumSteps(mem: CvodeMem, mxstep: number): number;
+/**
+ * Set the maximum method order. Clamped to [1, qmax] where qmax is
+ * ADAMS_Q_MAX or BDF_Q_MAX depending on the linear multistep method.
+ */
+export declare function cvodeSetMaxOrd(mem: CvodeMem, maxord: number): number;
+/**
+ * Set the maximum step size. If hmax <= 0, no upper limit is imposed
+ * (cv_hmax_inv = 0). Otherwise cv_hmax_inv = 1 / hmax.
+ */
+export declare function cvodeSetMaxStep(mem: CvodeMem, hmax: number): number;
+/**
+ * Set the minimum step size (stored as absolute value).
+ */
+export declare function cvodeSetMinStep(mem: CvodeMem, hmin: number): number;
+/**
+ * Set the initial step size hint.
+ */
+export declare function cvodeSetInitStep(mem: CvodeMem, hin: number): number;
+/**
+ * Set a stop time. Integration will not proceed past tstop.
+ */
+export declare function cvodeSetStopTime(mem: CvodeMem, tstop: number): number;
+/**
+ * Attach user data that will be passed to the RHS, Jacobian, and root
+ * functions.
+ */
+export declare function cvodeSetUserData(mem: CvodeMem, data: any): number;
+/**
+ * Enable or disable BDF stability limit detection.
+ */
+export declare function cvodeSetStabLimDet(mem: CvodeMem, on: boolean): number;
+/** Return the total number of internal steps taken. */
+export declare function cvodeGetNumSteps(mem: CvodeMem): number;
+/** Return the total number of RHS evaluations. */
+export declare function cvodeGetNumRhsEvals(mem: CvodeMem): number;
+/** Return the number of linear solver setup calls. */
+export declare function cvodeGetNumLinSolvSetups(mem: CvodeMem): number;
+/** Return the number of error test failures. */
+export declare function cvodeGetNumErrTestFails(mem: CvodeMem): number;
+/** Return the number of nonlinear solver iterations. */
+export declare function cvodeGetNumNonlinSolvIters(mem: CvodeMem): number;
+/** Return the number of nonlinear solver convergence failures. */
+export declare function cvodeGetNumNonlinSolvConvFails(mem: CvodeMem): number;
+/** Return the number of Jacobian evaluations (from the linear solver). */
+export declare function cvodeGetNumJacEvals(mem: CvodeMem): number;
+/** Return the total number of root-function evaluations. */
+export declare function cvodeGetNumGEvals(mem: CvodeMem): number;
+/** Return the method order used on the last successful step. */
+export declare function cvodeGetLastOrder(mem: CvodeMem): number;
+/** Return the step size used on the last successful step. */
+export declare function cvodeGetLastStep(mem: CvodeMem): number;
+/** Return the current internal time reached by the solver. */
+export declare function cvodeGetCurrentTime(mem: CvodeMem): number;
+/**
+ * Return a snapshot of all integrator statistics as a plain object.
+ */
+export declare function cvodeGetIntegratorStats(mem: CvodeMem): CvodeStats;

package/{src → dist/src}/solver-tools/cvode/cvode_io.js

@@ -163,8 +163,7 @@ export function cvodeGetNumNonlinSolvConvFails(mem) {
 }
 /** Return the number of Jacobian evaluations (from the linear solver). */
 export function cvodeGetNumJacEvals(mem) {
-    var _a, _b;
-    return (_b = (_a = mem.cv_lmem) === null || _a === void 0 ? void 0 : _a.nje) !== null && _b !== void 0 ? _b : 0;
+    return mem.cv_lmem?.nje ?? 0;
 }
 /** Return the total number of root-function evaluations. */
 export function cvodeGetNumGEvals(mem) {

package/dist/src/solver-tools/cvode/cvode_io.js.map

@@ -0,0 +1 @@
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package/dist/src/solver-tools/cvode/cvode_ls.d.ts

@@ -0,0 +1,23 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { CvodeMem, CvodeJacFn } from './common';
+/**
+ * cvodeSetLinearSolver - Initialize the dense linear solver.
+ * Sets up CvLsMem, allocates matrix, sets function pointers on CvodeMem.
+ */
+export declare function cvodeSetLinearSolver(mem: CvodeMem): number;
+/**
+ * cvodeSetJacFn - Set a user-supplied Jacobian function.
+ */
+export declare function cvodeSetJacFn(mem: CvodeMem, jac: CvodeJacFn | null): number;

package/dist/src/solver-tools/cvode/cvode_ls.js.map

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package/dist/src/solver-tools/cvode/cvode_nls.d.ts

@@ -0,0 +1,25 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { CvodeMem } from './common';
+/**
+ * cvNls - Solve the nonlinear system for one step.
+ *
+ * For BDF: Newton iteration solving G(ycor) = 0 where
+ *   G(ycor) = rl1*zn[1] + ycor - gamma*f(tn, zn[0]+ycor)
+ * The Newton update is: (I - gamma*J) * delta = -G(ycor)
+ *
+ * For Adams: Fixed-point iteration
+ *   ycor_new = h * rl1 * f(tn, zn[0]+ycor) - rl1*zn[1]
+ */
+export declare function cvNls(mem: CvodeMem, nflag: number): number;

package/dist/src/solver-tools/cvode/cvode_nls.js.map

@@ -0,0 +1 @@
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package/dist/src/solver-tools/cvode/cvode_root.d.ts

@@ -0,0 +1,64 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { CvodeMem, CvodeRootFn } from './common';
+/**
+ * CVodeRootInit - Initialize rootfinding for CVODE.
+ *
+ * C reference: CVodeRootInit (cvode.c, lines ~821-1012)
+ *
+ * If nrtfn <= 0, disables rootfinding and returns CV_SUCCESS.
+ * Otherwise, allocates arrays for root functions and sets defaults.
+ *
+ * @param mem   - CVODE memory block
+ * @param nrtfn - number of root functions
+ * @param g     - root function callback
+ * @returns CV_SUCCESS on success
+ */
+export declare function cvodeRootInit(mem: CvodeMem, nrtfn: number, g: CvodeRootFn): number;
+/**
+ * cvRcheck1 - First-step root check.
+ *
+ * C reference: cvRcheck1 (cvode.c, lines ~4251-4300)
+ *
+ * Completes initialization of rootfinding memory and checks whether g
+ * has a zero both at and very near the initial point of the IVP.
+ *
+ * @param mem - CVODE memory block
+ * @returns CV_SUCCESS or CV_RTFUNC_FAIL
+ */
+export declare function cvRcheck1(mem: CvodeMem): number;
+/**
+ * cvRcheck2 - Subsequent-step root check for exact zeros at last root.
+ *
+ * C reference: cvRcheck2 (cvode.c, lines ~4323-4385)
+ *
+ * Checks for exact zeros of g at the last root found, for close pairs
+ * of zeros (error condition), and for a new root at a nearby point.
+ *
+ * @param mem - CVODE memory block
+ * @returns CV_SUCCESS, CLOSERT, RTFOUND, or CV_RTFUNC_FAIL
+ */
+export declare function cvRcheck2(mem: CvodeMem): number;
+/**
+ * cvRcheck3 - Root search between tlo and tn (or tout).
+ *
+ * C reference: cvRcheck3 (cvode.c, lines ~4400-4453)
+ *
+ * Interfaces to cvRootfind to look for a root of g between tlo and
+ * either tn or tout, whichever comes first.
+ *
+ * @param mem - CVODE memory block
+ * @returns CV_SUCCESS, RTFOUND, or CV_RTFUNC_FAIL
+ */
+export declare function cvRcheck3(mem: CvodeMem): number;

package/dist/src/solver-tools/cvode/cvode_root.js.map

@@ -0,0 +1 @@
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package/dist/src/solver-tools/cvode/dense_linalg.d.ts

@@ -0,0 +1,50 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+/**
+ * LU factorization of an n-by-n dense matrix by Gaussian elimination
+ * with partial pivoting (row-major, 0-based).
+ *
+ * On exit, `a` is overwritten with the LU factors:
+ * - The upper triangle (including diagonal) holds U.
+ * - The strict lower triangle holds the multipliers L (unit diagonal implied).
+ *
+ * The pivot vector `ipvt` records row interchanges: at step k, row k was
+ * swapped with row ipvt[k] before elimination.
+ *
+ * @param a   - n-by-n matrix stored as `Float64Array[]` (a[i] = row i).
+ *              Overwritten with LU factors in place.
+ * @param n   - matrix dimension (number of rows and columns).
+ * @param ipvt - pivot index output array (`Int32Array` of length n, 0-based).
+ * @returns 0 on success, or k+1 (1-based) if U[k][k] is exactly zero
+ *          (the matrix is singular or nearly so). A nonzero return means
+ *          the factorization completed but the factor U is singular.
+ */
+export declare function dgefa(a: Float64Array[], n: number, ipvt: Int32Array): number;
+/**
+ * Solve A * x = b using the LU factorization produced by {@link dgefa}.
+ *
+ * On entry, `b` contains the right-hand side vector. On exit, `b` is
+ * overwritten with the solution vector x.
+ *
+ * The solve proceeds in three stages:
+ * 1. Permute b according to the pivot vector (row interchanges).
+ * 2. Forward substitution: solve L * y = P * b.
+ * 3. Back substitution: solve U * x = y.
+ *
+ * @param a    - LU-factored n-by-n matrix from dgefa (row-major, 0-based).
+ * @param n    - matrix dimension.
+ * @param ipvt - pivot indices from dgefa (0-based, length n).
+ * @param b    - right-hand side on input (length n, 0-based), solution on output.
+ */
+export declare function dgesl(a: Float64Array[], n: number, ipvt: Int32Array, b: Float64Array): void;

package/dist/src/solver-tools/cvode/dense_linalg.js.map

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