diff-grok 1.1.0 → 1.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +1 -1
- package/README.MD +80 -31
- package/dist/index.d.ts +6 -0
- package/{index.js → dist/index.js} +2 -1
- package/dist/index.js.map +1 -0
- package/dist/src/examples/basic-use.d.ts +10 -0
- package/dist/src/examples/basic-use.js.map +1 -0
- package/dist/src/examples/check-methods.d.ts +1 -0
- package/{src → dist/src}/examples/check-methods.js +15 -3
- package/dist/src/examples/check-methods.js.map +1 -0
- package/dist/src/examples/corr-probs.d.ts +15 -0
- package/{src → dist/src}/examples/corr-probs.js +2 -2
- package/dist/src/examples/corr-probs.js.map +1 -0
- package/dist/src/examples/cyclic-model.d.ts +6 -0
- package/dist/src/examples/cyclic-model.js.map +1 -0
- package/dist/src/examples/e5.d.ts +15 -0
- package/dist/src/examples/e5.js.map +1 -0
- package/dist/src/examples/hires.d.ts +15 -0
- package/dist/src/examples/hires.js.map +1 -0
- package/dist/src/examples/index.d.ts +22 -0
- package/dist/src/examples/index.js.map +1 -0
- package/dist/src/examples/model-updates.d.ts +6 -0
- package/dist/src/examples/model-updates.js.map +1 -0
- package/dist/src/examples/orego.d.ts +15 -0
- package/dist/src/examples/orego.js.map +1 -0
- package/dist/src/examples/pipeline-use.d.ts +6 -0
- package/dist/src/examples/pipeline-use.js.map +1 -0
- package/dist/src/examples/pollution.d.ts +15 -0
- package/dist/src/examples/pollution.js.map +1 -0
- package/{src/examples/print-benchmark.ts → dist/src/examples/print-benchmark.d.ts} +8 -58
- package/dist/src/examples/print-benchmark.js.map +1 -0
- package/dist/src/examples/robertson.d.ts +15 -0
- package/{src → dist/src}/examples/robertson.js +2 -2
- package/dist/src/examples/robertson.js.map +1 -0
- package/dist/src/examples/scripting.d.ts +1 -0
- package/dist/src/examples/scripting.js.map +1 -0
- package/dist/src/examples/vdpol.d.ts +15 -0
- package/dist/src/examples/vdpol.js.map +1 -0
- package/dist/src/latex-export/examples/advanced-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/advanced-to-latex.js +41 -0
- package/dist/src/latex-export/examples/advanced-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/basic-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/basic-to-latex.js +17 -0
- package/dist/src/latex-export/examples/basic-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/bioreactor-to-latex-selective.d.ts +2 -0
- package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js +145 -0
- package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js.map +1 -0
- package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.d.ts +2 -0
- package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js +41 -0
- package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js.map +1 -0
- package/dist/src/latex-export/examples/energy-n-control-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/energy-n-control-to-markdown.js +58 -0
- package/dist/src/latex-export/examples/energy-n-control-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/extended-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/extended-to-markdown.js +37 -0
- package/dist/src/latex-export/examples/extended-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/fermentation-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/fermentation-to-latex.js +32 -0
- package/dist/src/latex-export/examples/fermentation-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/ga-production-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/ga-production-to-markdown.js +58 -0
- package/dist/src/latex-export/examples/ga-production-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/nimotuzumab-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/nimotuzumab-to-latex.js +53 -0
- package/dist/src/latex-export/examples/nimotuzumab-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.d.ts +2 -0
- package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js +50 -0
- package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js.map +1 -0
- package/dist/src/latex-export/examples/pk-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/pk-to-markdown.js +35 -0
- package/dist/src/latex-export/examples/pk-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/pollution-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/pollution-to-latex.js +141 -0
- package/dist/src/latex-export/examples/pollution-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/robertson-to-latex-no-meta.d.ts +2 -0
- package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js +25 -0
- package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js.map +1 -0
- package/dist/src/latex-export/generator/bracket-manager.d.ts +19 -0
- package/dist/src/latex-export/generator/bracket-manager.js +58 -0
- package/dist/src/latex-export/generator/bracket-manager.js.map +1 -0
- package/dist/src/latex-export/generator/document-builder.d.ts +13 -0
- package/dist/src/latex-export/generator/document-builder.js +433 -0
- package/dist/src/latex-export/generator/document-builder.js.map +1 -0
- package/dist/src/latex-export/generator/latex-generator.d.ts +23 -0
- package/dist/src/latex-export/generator/latex-generator.js +176 -0
- package/dist/src/latex-export/generator/latex-generator.js.map +1 -0
- package/dist/src/latex-export/index.d.ts +8 -0
- package/dist/src/latex-export/index.js +25 -0
- package/dist/src/latex-export/index.js.map +1 -0
- package/dist/src/latex-export/output/md-formatter.d.ts +16 -0
- package/dist/src/latex-export/output/md-formatter.js +27 -0
- package/dist/src/latex-export/output/md-formatter.js.map +1 -0
- package/dist/src/latex-export/output/tex-formatter.d.ts +5 -0
- package/dist/src/latex-export/output/tex-formatter.js +20 -0
- package/dist/src/latex-export/output/tex-formatter.js.map +1 -0
- package/dist/src/latex-export/parser/ast-parser.d.ts +7 -0
- package/dist/src/latex-export/parser/ast-parser.js +153 -0
- package/dist/src/latex-export/parser/ast-parser.js.map +1 -0
- package/dist/src/latex-export/parser/ivp-parser.d.ts +6 -0
- package/dist/src/latex-export/parser/ivp-parser.js +219 -0
- package/dist/src/latex-export/parser/ivp-parser.js.map +1 -0
- package/dist/src/latex-export/parser/line-joiner.d.ts +25 -0
- package/dist/src/latex-export/parser/line-joiner.js +80 -0
- package/dist/src/latex-export/parser/line-joiner.js.map +1 -0
- package/dist/src/latex-export/parser/tokenizer.d.ts +7 -0
- package/dist/src/latex-export/parser/tokenizer.js +143 -0
- package/dist/src/latex-export/parser/tokenizer.js.map +1 -0
- package/dist/src/latex-export/transformer/functions.d.ts +12 -0
- package/dist/src/latex-export/transformer/functions.js +47 -0
- package/dist/src/latex-export/transformer/functions.js.map +1 -0
- package/dist/src/latex-export/transformer/identifier.d.ts +23 -0
- package/dist/src/latex-export/transformer/identifier.js +194 -0
- package/dist/src/latex-export/transformer/identifier.js.map +1 -0
- package/dist/src/latex-export/transformer/operators.d.ts +9 -0
- package/dist/src/latex-export/transformer/operators.js +41 -0
- package/dist/src/latex-export/transformer/operators.js.map +1 -0
- package/dist/src/latex-export/types.d.ts +122 -0
- package/dist/src/latex-export/types.js +10 -0
- package/dist/src/latex-export/types.js.map +1 -0
- package/{src/pipeline/basic-pipeline-creator.ts → dist/src/pipeline/basic-pipeline-creator.d.ts} +11 -28
- package/dist/src/pipeline/basic-pipeline-creator.js.map +1 -0
- package/dist/src/pipeline/constants.d.ts +14 -0
- package/dist/src/pipeline/constants.js.map +1 -0
- package/dist/src/pipeline/index.d.ts +7 -0
- package/dist/src/pipeline/index.js.map +1 -0
- package/dist/src/pipeline/input.d.ts +3 -0
- package/dist/src/pipeline/input.js.map +1 -0
- package/dist/src/pipeline/loops-pipeline-creator.d.ts +124 -0
- package/dist/src/pipeline/loops-pipeline-creator.js.map +1 -0
- package/dist/src/pipeline/output.d.ts +10 -0
- package/{src → dist/src}/pipeline/output.js +1 -1
- package/dist/src/pipeline/output.js.map +1 -0
- package/dist/src/pipeline/pipeline-creator.d.ts +12 -0
- package/{src → dist/src}/pipeline/pipeline-creator.js +2 -0
- package/dist/src/pipeline/pipeline-creator.js.map +1 -0
- package/{src/pipeline/pipeline.ts → dist/src/pipeline/pipeline.d.ts} +10 -97
- package/dist/src/pipeline/pipeline.js.map +1 -0
- package/{src/pipeline/updates-pipeline-creator.ts → dist/src/pipeline/updates-pipeline-creator.d.ts} +15 -131
- package/dist/src/pipeline/updates-pipeline-creator.js.map +1 -0
- package/dist/src/scripting-tools/constants.d.ts +59 -0
- package/dist/src/scripting-tools/constants.js.map +1 -0
- package/dist/src/scripting-tools/index.d.ts +3 -0
- package/dist/src/scripting-tools/index.js.map +1 -0
- package/dist/src/scripting-tools/model-error.d.ts +10 -0
- package/{src → dist/src}/scripting-tools/model-error.js +2 -1
- package/dist/src/scripting-tools/model-error.js.map +1 -0
- package/dist/src/scripting-tools/scripting-tools.d.ts +277 -0
- package/{src → dist/src}/scripting-tools/scripting-tools.js +2 -4
- package/dist/src/scripting-tools/scripting-tools.js.map +1 -0
- package/dist/src/solver-tools/ab4-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ab4-method.js +3 -3
- package/dist/src/solver-tools/ab4-method.js.map +1 -0
- package/dist/src/solver-tools/ab5-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ab5-method.js +3 -3
- package/dist/src/solver-tools/ab5-method.js.map +1 -0
- package/dist/src/solver-tools/callbacks/callback-base.d.ts +8 -0
- package/dist/src/solver-tools/callbacks/callback-base.js.map +1 -0
- package/dist/src/solver-tools/callbacks/callback-tools.d.ts +6 -0
- package/dist/src/solver-tools/callbacks/callback-tools.js.map +1 -0
- package/dist/src/solver-tools/callbacks/iter-checker-callback.d.ts +12 -0
- package/{src → dist/src}/solver-tools/callbacks/iter-checker-callback.js +2 -0
- package/dist/src/solver-tools/callbacks/iter-checker-callback.js.map +1 -0
- package/dist/src/solver-tools/callbacks/time-checker-callback.d.ts +12 -0
- package/{src → dist/src}/solver-tools/callbacks/time-checker-callback.js +2 -2
- package/dist/src/solver-tools/callbacks/time-checker-callback.js.map +1 -0
- package/dist/src/solver-tools/cvode/common.d.ts +395 -0
- package/dist/src/solver-tools/cvode/common.js +483 -0
- package/dist/src/solver-tools/cvode/common.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode.d.ts +23 -0
- package/dist/src/solver-tools/cvode/cvode.js +1062 -0
- package/dist/src/solver-tools/cvode/cvode.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_adams.d.ts +22 -0
- package/dist/src/solver-tools/cvode/cvode_adams.js +124 -0
- package/dist/src/solver-tools/cvode/cvode_adams.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_bdf.d.ts +37 -0
- package/dist/src/solver-tools/cvode/cvode_bdf.js +153 -0
- package/dist/src/solver-tools/cvode/cvode_bdf.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_class.d.ts +116 -0
- package/dist/src/solver-tools/cvode/cvode_class.js +163 -0
- package/dist/src/solver-tools/cvode/cvode_class.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_hin.d.ts +24 -0
- package/dist/src/solver-tools/cvode/cvode_hin.js +119 -0
- package/dist/src/solver-tools/cvode/cvode_hin.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_io.d.ts +98 -0
- package/dist/src/solver-tools/cvode/cvode_io.js +202 -0
- package/dist/src/solver-tools/cvode/cvode_io.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_ls.d.ts +23 -0
- package/dist/src/solver-tools/cvode/cvode_ls.js +210 -0
- package/dist/src/solver-tools/cvode/cvode_ls.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_nls.d.ts +25 -0
- package/dist/src/solver-tools/cvode/cvode_nls.js +220 -0
- package/dist/src/solver-tools/cvode/cvode_nls.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_root.d.ts +64 -0
- package/dist/src/solver-tools/cvode/cvode_root.js +415 -0
- package/dist/src/solver-tools/cvode/cvode_root.js.map +1 -0
- package/dist/src/solver-tools/cvode/dense_linalg.d.ts +50 -0
- package/dist/src/solver-tools/cvode/dense_linalg.js +131 -0
- package/dist/src/solver-tools/cvode/dense_linalg.js.map +1 -0
- package/dist/src/solver-tools/cvode/index.d.ts +24 -0
- package/dist/src/solver-tools/cvode/index.js +26 -0
- package/dist/src/solver-tools/cvode/index.js.map +1 -0
- package/dist/src/solver-tools/cvode-method.d.ts +47 -0
- package/dist/src/solver-tools/cvode-method.js +114 -0
- package/dist/src/solver-tools/cvode-method.js.map +1 -0
- package/dist/src/solver-tools/index.d.ts +16 -0
- package/{src → dist/src}/solver-tools/index.js +1 -0
- package/dist/src/solver-tools/index.js.map +1 -0
- package/dist/src/solver-tools/lin-alg-tools.d.ts +6 -0
- package/dist/src/solver-tools/lin-alg-tools.js.map +1 -0
- package/dist/src/solver-tools/lsoda/blas.d.ts +59 -0
- package/{src → dist/src}/solver-tools/lsoda/blas.js +11 -0
- package/dist/src/solver-tools/lsoda/blas.js.map +1 -0
- package/dist/src/solver-tools/lsoda/cfode.d.ts +18 -0
- package/{src → dist/src}/solver-tools/lsoda/cfode.js +11 -0
- package/dist/src/solver-tools/lsoda/cfode.js.map +1 -0
- package/dist/src/solver-tools/lsoda/common.d.ts +85 -0
- package/dist/src/solver-tools/lsoda/common.js +96 -0
- package/dist/src/solver-tools/lsoda/common.js.map +1 -0
- package/dist/src/solver-tools/lsoda/corfailure.d.ts +18 -0
- package/{src → dist/src}/solver-tools/lsoda/corfailure.js +11 -0
- package/dist/src/solver-tools/lsoda/corfailure.js.map +1 -0
- package/dist/src/solver-tools/lsoda/correction.d.ts +23 -0
- package/{src → dist/src}/solver-tools/lsoda/correction.js +11 -0
- package/dist/src/solver-tools/lsoda/correction.js.map +1 -0
- package/dist/src/solver-tools/lsoda/dense.d.ts +47 -0
- package/{src → dist/src}/solver-tools/lsoda/dense.js +13 -0
- package/dist/src/solver-tools/lsoda/dense.js.map +1 -0
- package/dist/src/solver-tools/lsoda/index.d.ts +16 -0
- package/dist/src/solver-tools/lsoda/index.js +15 -0
- package/dist/src/solver-tools/lsoda/index.js.map +1 -0
- package/dist/src/solver-tools/lsoda/intdy.d.ts +19 -0
- package/{src → dist/src}/solver-tools/lsoda/intdy.js +11 -0
- package/dist/src/solver-tools/lsoda/intdy.js.map +1 -0
- package/dist/src/solver-tools/lsoda/lsoda.d.ts +66 -0
- package/{src → dist/src}/solver-tools/lsoda/lsoda.js +24 -5
- package/dist/src/solver-tools/lsoda/lsoda.js.map +1 -0
- package/dist/src/solver-tools/lsoda/methodswitch.d.ts +21 -0
- package/{src → dist/src}/solver-tools/lsoda/methodswitch.js +11 -0
- package/dist/src/solver-tools/lsoda/methodswitch.js.map +1 -0
- package/dist/src/solver-tools/lsoda/orderswitch.d.ts +21 -0
- package/{src → dist/src}/solver-tools/lsoda/orderswitch.js +11 -0
- package/dist/src/solver-tools/lsoda/orderswitch.js.map +1 -0
- package/dist/src/solver-tools/lsoda/prja.d.ts +18 -0
- package/{src → dist/src}/solver-tools/lsoda/prja.js +11 -0
- package/dist/src/solver-tools/lsoda/prja.js.map +1 -0
- package/dist/src/solver-tools/lsoda/scaleh.d.ts +16 -0
- package/{src → dist/src}/solver-tools/lsoda/scaleh.js +11 -0
- package/dist/src/solver-tools/lsoda/scaleh.js.map +1 -0
- package/dist/src/solver-tools/lsoda/solsy.d.ts +17 -0
- package/dist/src/solver-tools/lsoda/solsy.js +25 -0
- package/dist/src/solver-tools/lsoda/solsy.js.map +1 -0
- package/dist/src/solver-tools/lsoda/stoda.d.ts +19 -0
- package/{src → dist/src}/solver-tools/lsoda/stoda.js +11 -0
- package/dist/src/solver-tools/lsoda/stoda.js.map +1 -0
- package/dist/src/solver-tools/lsoda-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/lsoda-method.js +23 -9
- package/dist/src/solver-tools/lsoda-method.js.map +1 -0
- package/dist/src/solver-tools/mrt-method.d.ts +47 -0
- package/{src → dist/src}/solver-tools/mrt-method.js +2 -2
- package/dist/src/solver-tools/mrt-method.js.map +1 -0
- package/dist/src/solver-tools/rk3-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/rk3-method.js +2 -2
- package/dist/src/solver-tools/rk3-method.js.map +1 -0
- package/dist/src/solver-tools/rk4-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/rk4-method.js +2 -2
- package/dist/src/solver-tools/rk4-method.js.map +1 -0
- package/dist/src/solver-tools/rkdp-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/rkdp-method.js +2 -2
- package/dist/src/solver-tools/rkdp-method.js.map +1 -0
- package/dist/src/solver-tools/ros34prw-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ros34prw-method.js +2 -2
- package/dist/src/solver-tools/ros34prw-method.js.map +1 -0
- package/dist/src/solver-tools/ros3prw-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ros3prw-method.js +2 -2
- package/dist/src/solver-tools/ros3prw-method.js.map +1 -0
- package/{src/solver-tools/solver-defs.ts → dist/src/solver-tools/solver-defs.d.ts} +45 -84
- package/{src → dist/src}/solver-tools/solver-defs.js +1 -0
- package/dist/src/solver-tools/solver-defs.js.map +1 -0
- package/dist/src/worker-tools/index.d.ts +2 -0
- package/dist/src/worker-tools/index.js.map +1 -0
- package/{src/worker-tools/scripting.ts → dist/src/worker-tools/scripting.d.ts} +9 -91
- package/dist/src/worker-tools/scripting.js.map +1 -0
- package/dist/src/worker-tools/solving.d.ts +7 -0
- package/{src → dist/src}/worker-tools/solving.js +3 -1
- package/dist/src/worker-tools/solving.js.map +1 -0
- package/package.json +13 -12
- package/.claude/settings.local.json +0 -11
- package/.eslintrc.json +0 -45
- package/.github/ISSUE_TEMPLATE/bug_report.md +0 -29
- package/.github/ISSUE_TEMPLATE/feature_request.md +0 -20
- package/.github/PULL_REQUEST_TEMPLATE.md +0 -22
- package/.github/scripts/bump-js-api-version.sh +0 -106
- package/.github/scripts/check-output.sh +0 -20
- package/.github/scripts/iac-cfn-deploy.sh +0 -90
- package/.github/scripts/slack_api_request.sh +0 -65
- package/.github/scripts/test_package.sh +0 -270
- package/.github/workflows/deploy-docs.yml +0 -15
- package/.github/workflows/libraries.yaml +0 -305
- package/.github/workflows/test.yaml +0 -19
- package/CLAUDE.md +0 -98
- package/CONTRIBUTING.md +0 -74
- package/eslintrc.json +0 -45
- package/images/E5.png +0 -0
- package/images/HIRES.png +0 -0
- package/images/OREGO.png +0 -0
- package/images/POLL-full.png +0 -0
- package/images/POLL.png +0 -0
- package/images/ROBER.png +0 -0
- package/images/VDP0L.png +0 -0
- package/images/VDPOL.png +0 -0
- package/images/acid-prod.gif +0 -0
- package/index.js.map +0 -1
- package/index.ts +0 -17
- package/jest.config.js +0 -13
- package/src/examples/basic-use.js.map +0 -1
- package/src/examples/basic-use.ts +0 -44
- package/src/examples/bioreactor.js +0 -125
- package/src/examples/bioreactor.js.map +0 -1
- package/src/examples/bioreactor.ts +0 -132
- package/src/examples/check-methods.js.map +0 -1
- package/src/examples/check-methods.ts +0 -81
- package/src/examples/corr-probs.js.map +0 -1
- package/src/examples/corr-probs.ts +0 -155
- package/src/examples/cyclic-model.js.map +0 -1
- package/src/examples/cyclic-model.ts +0 -112
- package/src/examples/e5.js.map +0 -1
- package/src/examples/e5.ts +0 -36
- package/src/examples/hires.js.map +0 -1
- package/src/examples/hires.ts +0 -40
- package/src/examples/index.js.map +0 -1
- package/src/examples/index.ts +0 -34
- package/src/examples/model-updates.js.map +0 -1
- package/src/examples/model-updates.ts +0 -122
- package/src/examples/orego.js.map +0 -1
- package/src/examples/orego.ts +0 -25
- package/src/examples/pipeline-use.js.map +0 -1
- package/src/examples/pipeline-use.ts +0 -98
- package/src/examples/pollution.js.map +0 -1
- package/src/examples/pollution.ts +0 -133
- package/src/examples/print-benchmark.js.map +0 -1
- package/src/examples/robertson.js.map +0 -1
- package/src/examples/robertson.ts +0 -19
- package/src/examples/scripting.js.map +0 -1
- package/src/examples/scripting.ts +0 -35
- package/src/examples/vdpol.js.map +0 -1
- package/src/examples/vdpol.ts +0 -17
- package/src/pipeline/basic-pipeline-creator.js.map +0 -1
- package/src/pipeline/constants.js.map +0 -1
- package/src/pipeline/constants.ts +0 -21
- package/src/pipeline/index.js.map +0 -1
- package/src/pipeline/index.ts +0 -7
- package/src/pipeline/input.js.map +0 -1
- package/src/pipeline/input.ts +0 -55
- package/src/pipeline/loops-pipeline-creator.js.map +0 -1
- package/src/pipeline/loops-pipeline-creator.ts +0 -252
- package/src/pipeline/output.js.map +0 -1
- package/src/pipeline/output.ts +0 -201
- package/src/pipeline/pipeline-creator.js.map +0 -1
- package/src/pipeline/pipeline-creator.ts +0 -20
- package/src/pipeline/pipeline.js.map +0 -1
- package/src/pipeline/updates-pipeline-creator.js.map +0 -1
- package/src/scripting-tools/constants.js.map +0 -1
- package/src/scripting-tools/constants.ts +0 -69
- package/src/scripting-tools/index.js.map +0 -1
- package/src/scripting-tools/index.ts +0 -8
- package/src/scripting-tools/model-error.js.map +0 -1
- package/src/scripting-tools/model-error.ts +0 -21
- package/src/scripting-tools/scripting-tools.js.map +0 -1
- package/src/scripting-tools/scripting-tools.ts +0 -1582
- package/src/solver-tools/ab4-method.js.map +0 -1
- package/src/solver-tools/ab4-method.ts +0 -395
- package/src/solver-tools/ab5-method.js.map +0 -1
- package/src/solver-tools/ab5-method.ts +0 -397
- package/src/solver-tools/callbacks/callback-base.js.map +0 -1
- package/src/solver-tools/callbacks/callback-base.ts +0 -12
- package/src/solver-tools/callbacks/callback-tools.js.map +0 -1
- package/src/solver-tools/callbacks/callback-tools.ts +0 -22
- package/src/solver-tools/callbacks/iter-checker-callback.js.map +0 -1
- package/src/solver-tools/callbacks/iter-checker-callback.ts +0 -25
- package/src/solver-tools/callbacks/time-checker-callback.js.map +0 -1
- package/src/solver-tools/callbacks/time-checker-callback.ts +0 -23
- package/src/solver-tools/index.js.map +0 -1
- package/src/solver-tools/index.ts +0 -15
- package/src/solver-tools/lin-alg-tools.js.map +0 -1
- package/src/solver-tools/lin-alg-tools.ts +0 -75
- package/src/solver-tools/lsoda/blas.js.map +0 -1
- package/src/solver-tools/lsoda/blas.ts +0 -267
- package/src/solver-tools/lsoda/cfode.js.map +0 -1
- package/src/solver-tools/lsoda/cfode.ts +0 -83
- package/src/solver-tools/lsoda/common.js +0 -94
- package/src/solver-tools/lsoda/common.js.map +0 -1
- package/src/solver-tools/lsoda/common.ts +0 -135
- package/src/solver-tools/lsoda/corfailure.js.map +0 -1
- package/src/solver-tools/lsoda/corfailure.ts +0 -30
- package/src/solver-tools/lsoda/correction.js.map +0 -1
- package/src/solver-tools/lsoda/correction.ts +0 -119
- package/src/solver-tools/lsoda/dense.js.map +0 -1
- package/src/solver-tools/lsoda/dense.ts +0 -129
- package/src/solver-tools/lsoda/index.js +0 -4
- package/src/solver-tools/lsoda/index.js.map +0 -1
- package/src/solver-tools/lsoda/index.ts +0 -5
- package/src/solver-tools/lsoda/intdy.js.map +0 -1
- package/src/solver-tools/lsoda/intdy.ts +0 -50
- package/src/solver-tools/lsoda/lsoda.js.map +0 -1
- package/src/solver-tools/lsoda/lsoda.ts +0 -632
- package/src/solver-tools/lsoda/methodswitch.js.map +0 -1
- package/src/solver-tools/lsoda/methodswitch.ts +0 -107
- package/src/solver-tools/lsoda/orderswitch.js.map +0 -1
- package/src/solver-tools/lsoda/orderswitch.ts +0 -95
- package/src/solver-tools/lsoda/prja.js.map +0 -1
- package/src/solver-tools/lsoda/prja.ts +0 -49
- package/src/solver-tools/lsoda/scaleh.js.map +0 -1
- package/src/solver-tools/lsoda/scaleh.ts +0 -33
- package/src/solver-tools/lsoda/solsy.js +0 -14
- package/src/solver-tools/lsoda/solsy.js.map +0 -1
- package/src/solver-tools/lsoda/solsy.ts +0 -18
- package/src/solver-tools/lsoda/stoda.js.map +0 -1
- package/src/solver-tools/lsoda/stoda.ts +0 -286
- package/src/solver-tools/lsoda-method.js.map +0 -1
- package/src/solver-tools/lsoda-method.ts +0 -136
- package/src/solver-tools/mrt-method.js.map +0 -1
- package/src/solver-tools/mrt-method.ts +0 -398
- package/src/solver-tools/rk3-method.js.map +0 -1
- package/src/solver-tools/rk3-method.ts +0 -257
- package/src/solver-tools/rk4-method.js.map +0 -1
- package/src/solver-tools/rk4-method.ts +0 -286
- package/src/solver-tools/rkdp-method.js.map +0 -1
- package/src/solver-tools/rkdp-method.ts +0 -300
- package/src/solver-tools/ros34prw-method.js.map +0 -1
- package/src/solver-tools/ros34prw-method.ts +0 -373
- package/src/solver-tools/ros3prw-method.js.map +0 -1
- package/src/solver-tools/ros3prw-method.ts +0 -342
- package/src/solver-tools/solver-defs.js.map +0 -1
- package/src/tests/correctness.test.js +0 -15
- package/src/tests/correctness.test.js.map +0 -1
- package/src/tests/correctness.test.ts +0 -16
- package/src/tests/lsoda-lib-correctness.test.js +0 -223
- package/src/tests/lsoda-lib-correctness.test.js.map +0 -1
- package/src/tests/lsoda-lib-correctness.test.ts +0 -283
- package/src/tests/lsoda-lib-performance.test.js +0 -95
- package/src/tests/lsoda-lib-performance.test.js.map +0 -1
- package/src/tests/lsoda-lib-performance.test.ts +0 -126
- package/src/tests/performance.test.js +0 -16
- package/src/tests/performance.test.js.map +0 -1
- package/src/tests/performance.test.ts +0 -17
- package/src/tests/pipeline.test.js +0 -10
- package/src/tests/pipeline.test.js.map +0 -1
- package/src/tests/pipeline.test.ts +0 -11
- package/src/tests/test-defs.js +0 -207
- package/src/tests/test-defs.js.map +0 -1
- package/src/tests/test-defs.ts +0 -225
- package/src/tests/test-utils.js +0 -28
- package/src/tests/test-utils.js.map +0 -1
- package/src/tests/test-utils.ts +0 -37
- package/src/worker-tools/index.js.map +0 -1
- package/src/worker-tools/index.ts +0 -2
- package/src/worker-tools/scripting.js.map +0 -1
- package/src/worker-tools/solving.js.map +0 -1
- package/src/worker-tools/solving.ts +0 -83
- package/tsconfig.json +0 -71
- package/typedoc.json +0 -8
- /package/{src → dist/src}/examples/basic-use.js +0 -0
- /package/{src → dist/src}/examples/cyclic-model.js +0 -0
- /package/{src → dist/src}/examples/e5.js +0 -0
- /package/{src → dist/src}/examples/hires.js +0 -0
- /package/{src → dist/src}/examples/index.js +0 -0
- /package/{src → dist/src}/examples/model-updates.js +0 -0
- /package/{src → dist/src}/examples/orego.js +0 -0
- /package/{src → dist/src}/examples/pipeline-use.js +0 -0
- /package/{src → dist/src}/examples/pollution.js +0 -0
- /package/{src → dist/src}/examples/print-benchmark.js +0 -0
- /package/{src → dist/src}/examples/scripting.js +0 -0
- /package/{src → dist/src}/examples/vdpol.js +0 -0
- /package/{src → dist/src}/pipeline/basic-pipeline-creator.js +0 -0
- /package/{src → dist/src}/pipeline/constants.js +0 -0
- /package/{src → dist/src}/pipeline/index.js +0 -0
- /package/{src → dist/src}/pipeline/input.js +0 -0
- /package/{src → dist/src}/pipeline/loops-pipeline-creator.js +0 -0
- /package/{src → dist/src}/pipeline/pipeline.js +0 -0
- /package/{src → dist/src}/pipeline/updates-pipeline-creator.js +0 -0
- /package/{src → dist/src}/scripting-tools/constants.js +0 -0
- /package/{src → dist/src}/scripting-tools/index.js +0 -0
- /package/{src → dist/src}/solver-tools/callbacks/callback-base.js +0 -0
- /package/{src → dist/src}/solver-tools/callbacks/callback-tools.js +0 -0
- /package/{src → dist/src}/solver-tools/lin-alg-tools.js +0 -0
- /package/{src → dist/src}/worker-tools/index.js +0 -0
- /package/{src → dist/src}/worker-tools/scripting.js +0 -0
package/src/tests/test-defs.js
DELETED
|
@@ -1,207 +0,0 @@
|
|
|
1
|
-
/* eslint-disable max-len */
|
|
2
|
-
import { mrt, ros3prw, ros34prw, rk4, ab5, ab4, rkdp, rk3, lsoda } from '../../index';
|
|
3
|
-
export const methods = new Map([
|
|
4
|
-
['MRT', mrt],
|
|
5
|
-
['ROS3PRw', ros3prw],
|
|
6
|
-
['ROS34PRw', ros34prw],
|
|
7
|
-
['RK4', rk4],
|
|
8
|
-
['AB5', ab5],
|
|
9
|
-
['AB4', ab4],
|
|
10
|
-
['RKDP', rkdp],
|
|
11
|
-
['RK3', rk3],
|
|
12
|
-
['LSODA', lsoda],
|
|
13
|
-
]);
|
|
14
|
-
/** Implicit methods suitable for stiff performance benchmarks */
|
|
15
|
-
export const implicitMethods = new Map([
|
|
16
|
-
['MRT', mrt],
|
|
17
|
-
['ROS3PRw', ros3prw],
|
|
18
|
-
['ROS34PRw', ros34prw],
|
|
19
|
-
['LSODA', lsoda],
|
|
20
|
-
]);
|
|
21
|
-
export const MAX_MAD = 0.1;
|
|
22
|
-
export const TIMEOUT_MS = 10000;
|
|
23
|
-
const BASIC_MODEL = `#name: M|M|2|2
|
|
24
|
-
#description: Modelling the system with two servers & two waiting places (EXPLAINED)
|
|
25
|
-
#equations:
|
|
26
|
-
dp0/dt = -la * p0 + mu * p1
|
|
27
|
-
dp1/dt = la * p0 - (la + mu) * p1 + 2 * mu * p2
|
|
28
|
-
dp2/dt = la * p1 - (la + 2 * mu) * p2 + 2 * mu * p3
|
|
29
|
-
dp3/dt = la * p2 - (la + 2 * mu) * p3 + 2 * mu * p4
|
|
30
|
-
|
|
31
|
-
#expressions:
|
|
32
|
-
la = 1 / arrival
|
|
33
|
-
mu = 1 / service
|
|
34
|
-
p4 = 1 - p0 - p1 - p2 - p3
|
|
35
|
-
busy = 1 - p0 - p1
|
|
36
|
-
queue = p3 + 2 * p4
|
|
37
|
-
|
|
38
|
-
#argument: t
|
|
39
|
-
_t0 = 0 {min: 0; max: 10; caption: start; category: Time; units: min} [Initial time of simulation]
|
|
40
|
-
_t1 = 60 {min: 20; max: 100; caption: finish; category: Time; units: min} [Final time of simulation]
|
|
41
|
-
_h = 1 {min: 0.01; max: 0.1; caption: step; category: Time; units: min} [Time step of simulation]
|
|
42
|
-
|
|
43
|
-
#inits:
|
|
44
|
-
p0 = 1 {min: 0; max: 1; category: Initial state; caption: empty} [Probability that initially there are NO customers]
|
|
45
|
-
p1 = 0 {min: 0; max: 1; category: Initial state; caption: single} [Probability that initially there is ONE customer]
|
|
46
|
-
p2 = 0 {min: 0; max: 1; category: Initial state; caption: two} [Probability that initially there are TWO customers]
|
|
47
|
-
p3 = 0 {min: 0; max: 1; category: Initial state; caption: three} [Probability that initially there are THREE customers]
|
|
48
|
-
|
|
49
|
-
#output:
|
|
50
|
-
t {caption: Time, min}
|
|
51
|
-
p0 {caption: P(Empty)}
|
|
52
|
-
busy {caption: P(Full load)}
|
|
53
|
-
queue {caption: E(Queue)}
|
|
54
|
-
|
|
55
|
-
#parameters:
|
|
56
|
-
arrival = 10 {min: 1; max: 100; category: Means; caption: arrival; units: min} [Mean arrival time]
|
|
57
|
-
service = 100 {min: 1; max: 100; category: Means; caption: service; units: min} [Mean service time]`;
|
|
58
|
-
const BASIC_MODEL_INPUTS = {
|
|
59
|
-
_t0: 0,
|
|
60
|
-
_t1: 60,
|
|
61
|
-
_h: 1,
|
|
62
|
-
p0: 1,
|
|
63
|
-
p1: 0,
|
|
64
|
-
p2: 0,
|
|
65
|
-
p3: 0,
|
|
66
|
-
arrival: 10,
|
|
67
|
-
service: 100,
|
|
68
|
-
};
|
|
69
|
-
const BASIC_MODEL_OUTPUTS = 4;
|
|
70
|
-
const CYCLIC_MODEL = `#name: PK-PD
|
|
71
|
-
#tags: model
|
|
72
|
-
#description: Pharmacokinetic-pharmacodynamic (PK-PD) simulation: two-compartment model
|
|
73
|
-
#equations:
|
|
74
|
-
d(depot)/dt = -KA * depot
|
|
75
|
-
d(centr)/dt = KA * depot - CL * C2 - Q * C2 + Q * C3
|
|
76
|
-
d(peri)/dt = Q * C2 - Q * C3
|
|
77
|
-
d(eff)/dt = Kin - Kout * (1 - C2/(EC50 + C2)) * eff
|
|
78
|
-
|
|
79
|
-
#expressions:
|
|
80
|
-
C2 = centr / V2
|
|
81
|
-
C3 = peri / V3
|
|
82
|
-
|
|
83
|
-
#loop:
|
|
84
|
-
_count = 10 {caption: count; category: Dosing; min: 1; max: 20} [Number of doses]
|
|
85
|
-
depot += dose
|
|
86
|
-
|
|
87
|
-
#argument: t
|
|
88
|
-
_t0 = 0 {units: h; caption: begin; category: Dosing; min: 0; max: 1} [Begin of dosing interval]
|
|
89
|
-
_t1 = 12 {units: h; caption: end; category: Dosing; min: 5; max: 15} [End of dosing interval]
|
|
90
|
-
_h = 1 {units: h; caption: step; category: Dosing; min: 0.01; max: 0.1} [Time step of simulation]
|
|
91
|
-
|
|
92
|
-
#inits:
|
|
93
|
-
depot = 0 {category: Initial values}
|
|
94
|
-
centr = 0 {category: Initial values} [Central]
|
|
95
|
-
peri = 0 {category: Initial values} [Peripheral]
|
|
96
|
-
eff = 0.2 {category: Initial values} [Effective compartment rate]
|
|
97
|
-
|
|
98
|
-
#parameters:
|
|
99
|
-
dose = 1e4 {category: Dosing; min: 1e3; max: 2e4; step: 1e3} [Dosage]
|
|
100
|
-
KA = 0.3 {caption: rate constant; category: Parameters; min: 0.1; max: 1}
|
|
101
|
-
CL = 2 {caption: clearance; category: Parameters; min: 1; max: 5}
|
|
102
|
-
V2 = 4 {caption: central volume; category: Parameters; min: 1; max: 10} [Central compartment volume]
|
|
103
|
-
Q = 1 {caption: inter rate; category: Parameters; min: 0.1; max: 1} [Intercompartmental rate]
|
|
104
|
-
V3 = 30 {caption: peri volume; category: Parameters; min: 20; max: 40} [Peripheral compartment volume]
|
|
105
|
-
EC50 = 8 {caption: effect; category: Parameters; min: 1; max: 10}
|
|
106
|
-
Kin = 0.2 {caption: Kin; category: Parameters; min: 0.1; max: 0.5} [The first-order production constant]
|
|
107
|
-
Kout = 0.2 {caption: Kout; category: Parameters; min: 0.1; max: 0.5} [The first-order dissipation rate constant]
|
|
108
|
-
|
|
109
|
-
#tolerance: 1e-9`;
|
|
110
|
-
const CYCLIC_MODEL_INPUTS = {
|
|
111
|
-
_count: 10,
|
|
112
|
-
_t0: 0,
|
|
113
|
-
_t1: 16,
|
|
114
|
-
_h: 1,
|
|
115
|
-
depot: 0,
|
|
116
|
-
centr: 0,
|
|
117
|
-
peri: 0,
|
|
118
|
-
eff: 0.2,
|
|
119
|
-
dose: 10000,
|
|
120
|
-
KA: 0.63,
|
|
121
|
-
CL: 3.2,
|
|
122
|
-
V2: 6.58,
|
|
123
|
-
Q: 0.622,
|
|
124
|
-
V3: 35.6,
|
|
125
|
-
EC50: 5.41,
|
|
126
|
-
Kin: 0.272,
|
|
127
|
-
Kout: 0.276,
|
|
128
|
-
};
|
|
129
|
-
const CYCLIC_MODEL_OUTPUTS = 5;
|
|
130
|
-
const MULTISTAGE_MODEL = `#name: GA-production
|
|
131
|
-
#tags: model
|
|
132
|
-
#description: Gluconic acid (GA) production by Aspergillus niger modeling
|
|
133
|
-
#equations:
|
|
134
|
-
dX/dt = rX
|
|
135
|
-
dS/dt = -gamma * rX - lambda * X
|
|
136
|
-
dO/dt = Kla * (Cod - O) - delta * rX - phi * X
|
|
137
|
-
dP/dt = alpha * rX + beta * X
|
|
138
|
-
|
|
139
|
-
#expressions:
|
|
140
|
-
mu = muM * S / (Ks + S) * O / (Ko + O)
|
|
141
|
-
rX = mu * X
|
|
142
|
-
|
|
143
|
-
#argument: t, 1-st stage
|
|
144
|
-
_t0 = 0 {units: h; caption: initial; category: Misc} [Start of the process]
|
|
145
|
-
_t1 = 60 {units: h; caption: 1-st stage; category: Durations; min: 20; max: 80} [Duration of the 1-st stage]
|
|
146
|
-
step = 0.1 {units: h; caption: step; category: Misc; min: 0.01; max: 1} [Time step of simulation]
|
|
147
|
-
|
|
148
|
-
#update: 2-nd stage
|
|
149
|
-
duration = overall - _t1
|
|
150
|
-
S += 70
|
|
151
|
-
|
|
152
|
-
#inits:
|
|
153
|
-
X = 5 {units: kg/m³; caption: biomass; category: Initial concentrations; min: 1; max: 10} [Aspergillus niger biomass]
|
|
154
|
-
S = 150 {units: kg/m³; caption: glucose; category: Initial concentrations; min: 50; max: 200} [Glucose]
|
|
155
|
-
O = 7 {units: kg/m³; caption: oxygen; category: Initial concentrations; min: 1; max: 10} [Dissolved oxygen]
|
|
156
|
-
P = 0 {units: kg/m³; caption: acid; category: Initial concentrations; min: 0; max: 0.1} [Gluconic acid]
|
|
157
|
-
|
|
158
|
-
#output:
|
|
159
|
-
t {caption: time}
|
|
160
|
-
X {caption: biomass}
|
|
161
|
-
S {caption: glucose}
|
|
162
|
-
O {caption: oxygen}
|
|
163
|
-
P {caption: acid}
|
|
164
|
-
|
|
165
|
-
#parameters:
|
|
166
|
-
overall = 100 {units: h; category: Durations; min: 100; max: 140} [Overall duration]
|
|
167
|
-
muM = 0.668 {units: 1/h; category: Parameters} [Monod type model parameter]
|
|
168
|
-
alpha = 2.92 {category: Parameters} [Monod type model parameter]
|
|
169
|
-
beta = 0.131 {units: 1/h; category: Parameters} [Monod type model parameter]
|
|
170
|
-
gamma = 2.12 {category: Parameters} [Monod type model parameter]
|
|
171
|
-
lambda = 0.232 {units: 1/h; category: Parameters} [Monod type model parameter]
|
|
172
|
-
delta = 0.278 {category: Parameters} [Monod type model parameter]
|
|
173
|
-
phi = 4.87e-3 {units: 1/h; category: Parameters} [Monod type model parameter]
|
|
174
|
-
Ks = 1.309e2 {units: g/L; category: Parameters} [Monod type model parameter]
|
|
175
|
-
Ko = 3.63e-4 {units: g/L; category: Parameters} [Monod type model parameter]
|
|
176
|
-
Kla = 1.7e-2 {units: 1/s; category: Parameters} [Volumetric mass transfer coefficient]
|
|
177
|
-
Cod = 15 {units: kg/m³; category: Parameters} [Liquid phase dissolved oxygen saturation concentration]
|
|
178
|
-
|
|
179
|
-
#tolerance: 1e-9`;
|
|
180
|
-
const MULTISTAGE_MODEL_INPUTS = {
|
|
181
|
-
_t0: 0,
|
|
182
|
-
_t1: 60,
|
|
183
|
-
_h: 1,
|
|
184
|
-
X: 5,
|
|
185
|
-
S: 150,
|
|
186
|
-
O: 7,
|
|
187
|
-
P: 0,
|
|
188
|
-
overall: 100,
|
|
189
|
-
muM: 0.668,
|
|
190
|
-
alpha: 2.92,
|
|
191
|
-
beta: 0.131,
|
|
192
|
-
gamma: 2.12,
|
|
193
|
-
lambda: 0.232,
|
|
194
|
-
delta: 0.278,
|
|
195
|
-
phi: 4.87e-3,
|
|
196
|
-
Ks: 1.309e2,
|
|
197
|
-
Ko: 3.63e-4,
|
|
198
|
-
Kla: 1.7e-2,
|
|
199
|
-
Cod: 15,
|
|
200
|
-
};
|
|
201
|
-
const MULTISTAGE_MODEL_OUTPUTS = 5;
|
|
202
|
-
export const problems = new Map([
|
|
203
|
-
['basic', { model: BASIC_MODEL, inputs: BASIC_MODEL_INPUTS, outputsCount: BASIC_MODEL_OUTPUTS }],
|
|
204
|
-
['cyclic', { model: CYCLIC_MODEL, inputs: CYCLIC_MODEL_INPUTS, outputsCount: CYCLIC_MODEL_OUTPUTS }],
|
|
205
|
-
['multistage', { model: MULTISTAGE_MODEL, inputs: MULTISTAGE_MODEL_INPUTS, outputsCount: MULTISTAGE_MODEL_OUTPUTS }],
|
|
206
|
-
]);
|
|
207
|
-
//# sourceMappingURL=test-defs.js.map
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"test-defs.js","sourceRoot":"","sources":["test-defs.ts"],"names":[],"mappings":"AAAA,4BAA4B;AAC5B,OAAO,EAAC,GAAG,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,KAAK,EAAC,MAAM,aAAa,CAAC;AAEpF,MAAM,CAAC,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC;IAC7B,CAAC,KAAK,EAAE,GAAG,CAAC;IACZ,CAAC,SAAS,EAAE,OAAO,CAAC;IACpB,CAAC,UAAU,EAAE,QAAQ,CAAC;IACtB,CAAC,KAAK,EAAE,GAAG,CAAC;IACZ,CAAC,KAAK,EAAE,GAAG,CAAC;IACZ,CAAC,KAAK,EAAE,GAAG,CAAC;IACZ,CAAC,MAAM,EAAE,IAAI,CAAC;IACd,CAAC,KAAK,EAAE,GAAG,CAAC;IACZ,CAAC,OAAO,EAAE,KAAK,CAAC;CACjB,CAAC,CAAC;AAEH,iEAAiE;AACjE,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI,GAAG,CAAC;IACrC,CAAC,KAAK,EAAE,GAAG,CAAC;IACZ,CAAC,SAAS,EAAE,OAAO,CAAC;IACpB,CAAC,UAAU,EAAE,QAAQ,CAAC;IACtB,CAAC,OAAO,EAAE,KAAK,CAAC;CACjB,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,OAAO,GAAG,GAAG,CAAC;AAC3B,MAAM,CAAC,MAAM,UAAU,GAAG,KAAK,CAAC;AAEhC,MAAM,WAAW,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;uGAkCmF,CAAC;AAExG,MAAM,kBAAkB,GAAG;IACzB,GAAG,EAAE,CAAC;IACN,GAAG,EAAE,EAAE;IACP,EAAE,EAAE,CAAC;IACL,EAAE,EAAE,CAAC;IACL,EAAE,EAAE,CAAC;IACL,EAAE,EAAE,CAAC;IACL,EAAE,EAAE,CAAC;IACL,OAAO,EAAE,EAAE;IACX,OAAO,EAAE,GAAG;CACb,CAAC;AAEF,MAAM,mBAAmB,GAAG,CAAC,CAAC;AAE9B,MAAM,YAAY,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAuCJ,CAAC;AAElB,MAAM,mBAAmB,GAAG;IAC1B,MAAM,EAAE,EAAE;IACV,GAAG,EAAE,CAAC;IACN,GAAG,EAAE,EAAE;IACP,EAAE,EAAE,CAAC;IACL,KAAK,EAAE,CAAC;IACR,KAAK,EAAE,CAAC;IACR,IAAI,EAAE,CAAC;IACP,GAAG,EAAE,GAAG;IACR,IAAI,EAAE,KAAK;IACX,EAAE,EAAE,IAAI;IACR,EAAE,EAAE,GAAG;IACP,EAAE,EAAE,IAAI;IACR,CAAC,EAAE,KAAK;IACR,EAAE,EAAE,IAAI;IACR,IAAI,EAAE,IAAI;IACV,GAAG,EAAE,KAAK;IACV,IAAI,EAAE,KAAK;CACZ,CAAC;AAEF,MAAM,oBAAoB,GAAG,CAAC,CAAC;AAE/B,MAAM,gBAAgB,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAiDR,CAAC;AAElB,MAAM,uBAAuB,GAAG;IAC9B,GAAG,EAAE,CAAC;IACN,GAAG,EAAE,EAAE;IACP,EAAE,EAAE,CAAC;IACL,CAAC,EAAE,CAAC;IACJ,CAAC,EAAE,GAAG;IACN,CAAC,EAAE,CAAC;IACJ,CAAC,EAAE,CAAC;IACJ,OAAO,EAAE,GAAG;IACZ,GAAG,EAAE,KAAK;IACV,KAAK,EAAE,IAAI;IACX,IAAI,EAAE,KAAK;IACX,KAAK,EAAE,IAAI;IACX,MAAM,EAAE,KAAK;IACb,KAAK,EAAE,KAAK;IACZ,GAAG,EAAE,OAAO;IACZ,EAAE,EAAE,OAAO;IACX,EAAE,EAAE,OAAO;IACX,GAAG,EAAE,MAAM;IACX,GAAG,EAAE,EAAE;CACR,CAAC;AAEF,MAAM,wBAAwB,GAAG,CAAC,CAAC;AAQnC,MAAM,CAAC,MAAM,QAAQ,GAAG,IAAI,GAAG,CAAsB;IACnD,CAAC,OAAO,EAAE,EAAC,KAAK,EAAE,WAAW,EAAE,MAAM,EAAE,kBAAkB,EAAE,YAAY,EAAE,mBAAmB,EAAC,CAAC;IAC9F,CAAC,QAAQ,EAAE,EAAC,KAAK,EAAE,YAAY,EAAE,MAAM,EAAE,mBAAmB,EAAE,YAAY,EAAE,oBAAoB,EAAC,CAAC;IAClG,CAAC,YAAY,EAAE,EAAC,KAAK,EAAE,gBAAgB,EAAE,MAAM,EAAE,uBAAuB,EAAE,YAAY,EAAE,wBAAwB,EAAC,CAAC;CACnH,CAAC,CAAC"}
|
package/src/tests/test-defs.ts
DELETED
|
@@ -1,225 +0,0 @@
|
|
|
1
|
-
/* eslint-disable max-len */
|
|
2
|
-
import {mrt, ros3prw, ros34prw, rk4, ab5, ab4, rkdp, rk3, lsoda} from '../../index';
|
|
3
|
-
|
|
4
|
-
export const methods = new Map([
|
|
5
|
-
['MRT', mrt],
|
|
6
|
-
['ROS3PRw', ros3prw],
|
|
7
|
-
['ROS34PRw', ros34prw],
|
|
8
|
-
['RK4', rk4],
|
|
9
|
-
['AB5', ab5],
|
|
10
|
-
['AB4', ab4],
|
|
11
|
-
['RKDP', rkdp],
|
|
12
|
-
['RK3', rk3],
|
|
13
|
-
['LSODA', lsoda],
|
|
14
|
-
]);
|
|
15
|
-
|
|
16
|
-
/** Implicit methods suitable for stiff performance benchmarks */
|
|
17
|
-
export const implicitMethods = new Map([
|
|
18
|
-
['MRT', mrt],
|
|
19
|
-
['ROS3PRw', ros3prw],
|
|
20
|
-
['ROS34PRw', ros34prw],
|
|
21
|
-
['LSODA', lsoda],
|
|
22
|
-
]);
|
|
23
|
-
|
|
24
|
-
export const MAX_MAD = 0.1;
|
|
25
|
-
export const TIMEOUT_MS = 10000;
|
|
26
|
-
|
|
27
|
-
const BASIC_MODEL = `#name: M|M|2|2
|
|
28
|
-
#description: Modelling the system with two servers & two waiting places (EXPLAINED)
|
|
29
|
-
#equations:
|
|
30
|
-
dp0/dt = -la * p0 + mu * p1
|
|
31
|
-
dp1/dt = la * p0 - (la + mu) * p1 + 2 * mu * p2
|
|
32
|
-
dp2/dt = la * p1 - (la + 2 * mu) * p2 + 2 * mu * p3
|
|
33
|
-
dp3/dt = la * p2 - (la + 2 * mu) * p3 + 2 * mu * p4
|
|
34
|
-
|
|
35
|
-
#expressions:
|
|
36
|
-
la = 1 / arrival
|
|
37
|
-
mu = 1 / service
|
|
38
|
-
p4 = 1 - p0 - p1 - p2 - p3
|
|
39
|
-
busy = 1 - p0 - p1
|
|
40
|
-
queue = p3 + 2 * p4
|
|
41
|
-
|
|
42
|
-
#argument: t
|
|
43
|
-
_t0 = 0 {min: 0; max: 10; caption: start; category: Time; units: min} [Initial time of simulation]
|
|
44
|
-
_t1 = 60 {min: 20; max: 100; caption: finish; category: Time; units: min} [Final time of simulation]
|
|
45
|
-
_h = 1 {min: 0.01; max: 0.1; caption: step; category: Time; units: min} [Time step of simulation]
|
|
46
|
-
|
|
47
|
-
#inits:
|
|
48
|
-
p0 = 1 {min: 0; max: 1; category: Initial state; caption: empty} [Probability that initially there are NO customers]
|
|
49
|
-
p1 = 0 {min: 0; max: 1; category: Initial state; caption: single} [Probability that initially there is ONE customer]
|
|
50
|
-
p2 = 0 {min: 0; max: 1; category: Initial state; caption: two} [Probability that initially there are TWO customers]
|
|
51
|
-
p3 = 0 {min: 0; max: 1; category: Initial state; caption: three} [Probability that initially there are THREE customers]
|
|
52
|
-
|
|
53
|
-
#output:
|
|
54
|
-
t {caption: Time, min}
|
|
55
|
-
p0 {caption: P(Empty)}
|
|
56
|
-
busy {caption: P(Full load)}
|
|
57
|
-
queue {caption: E(Queue)}
|
|
58
|
-
|
|
59
|
-
#parameters:
|
|
60
|
-
arrival = 10 {min: 1; max: 100; category: Means; caption: arrival; units: min} [Mean arrival time]
|
|
61
|
-
service = 100 {min: 1; max: 100; category: Means; caption: service; units: min} [Mean service time]`;
|
|
62
|
-
|
|
63
|
-
const BASIC_MODEL_INPUTS = {
|
|
64
|
-
_t0: 0,
|
|
65
|
-
_t1: 60,
|
|
66
|
-
_h: 1,
|
|
67
|
-
p0: 1,
|
|
68
|
-
p1: 0,
|
|
69
|
-
p2: 0,
|
|
70
|
-
p3: 0,
|
|
71
|
-
arrival: 10,
|
|
72
|
-
service: 100,
|
|
73
|
-
};
|
|
74
|
-
|
|
75
|
-
const BASIC_MODEL_OUTPUTS = 4;
|
|
76
|
-
|
|
77
|
-
const CYCLIC_MODEL = `#name: PK-PD
|
|
78
|
-
#tags: model
|
|
79
|
-
#description: Pharmacokinetic-pharmacodynamic (PK-PD) simulation: two-compartment model
|
|
80
|
-
#equations:
|
|
81
|
-
d(depot)/dt = -KA * depot
|
|
82
|
-
d(centr)/dt = KA * depot - CL * C2 - Q * C2 + Q * C3
|
|
83
|
-
d(peri)/dt = Q * C2 - Q * C3
|
|
84
|
-
d(eff)/dt = Kin - Kout * (1 - C2/(EC50 + C2)) * eff
|
|
85
|
-
|
|
86
|
-
#expressions:
|
|
87
|
-
C2 = centr / V2
|
|
88
|
-
C3 = peri / V3
|
|
89
|
-
|
|
90
|
-
#loop:
|
|
91
|
-
_count = 10 {caption: count; category: Dosing; min: 1; max: 20} [Number of doses]
|
|
92
|
-
depot += dose
|
|
93
|
-
|
|
94
|
-
#argument: t
|
|
95
|
-
_t0 = 0 {units: h; caption: begin; category: Dosing; min: 0; max: 1} [Begin of dosing interval]
|
|
96
|
-
_t1 = 12 {units: h; caption: end; category: Dosing; min: 5; max: 15} [End of dosing interval]
|
|
97
|
-
_h = 1 {units: h; caption: step; category: Dosing; min: 0.01; max: 0.1} [Time step of simulation]
|
|
98
|
-
|
|
99
|
-
#inits:
|
|
100
|
-
depot = 0 {category: Initial values}
|
|
101
|
-
centr = 0 {category: Initial values} [Central]
|
|
102
|
-
peri = 0 {category: Initial values} [Peripheral]
|
|
103
|
-
eff = 0.2 {category: Initial values} [Effective compartment rate]
|
|
104
|
-
|
|
105
|
-
#parameters:
|
|
106
|
-
dose = 1e4 {category: Dosing; min: 1e3; max: 2e4; step: 1e3} [Dosage]
|
|
107
|
-
KA = 0.3 {caption: rate constant; category: Parameters; min: 0.1; max: 1}
|
|
108
|
-
CL = 2 {caption: clearance; category: Parameters; min: 1; max: 5}
|
|
109
|
-
V2 = 4 {caption: central volume; category: Parameters; min: 1; max: 10} [Central compartment volume]
|
|
110
|
-
Q = 1 {caption: inter rate; category: Parameters; min: 0.1; max: 1} [Intercompartmental rate]
|
|
111
|
-
V3 = 30 {caption: peri volume; category: Parameters; min: 20; max: 40} [Peripheral compartment volume]
|
|
112
|
-
EC50 = 8 {caption: effect; category: Parameters; min: 1; max: 10}
|
|
113
|
-
Kin = 0.2 {caption: Kin; category: Parameters; min: 0.1; max: 0.5} [The first-order production constant]
|
|
114
|
-
Kout = 0.2 {caption: Kout; category: Parameters; min: 0.1; max: 0.5} [The first-order dissipation rate constant]
|
|
115
|
-
|
|
116
|
-
#tolerance: 1e-9`;
|
|
117
|
-
|
|
118
|
-
const CYCLIC_MODEL_INPUTS = {
|
|
119
|
-
_count: 10,
|
|
120
|
-
_t0: 0,
|
|
121
|
-
_t1: 16,
|
|
122
|
-
_h: 1,
|
|
123
|
-
depot: 0,
|
|
124
|
-
centr: 0,
|
|
125
|
-
peri: 0,
|
|
126
|
-
eff: 0.2,
|
|
127
|
-
dose: 10000,
|
|
128
|
-
KA: 0.63,
|
|
129
|
-
CL: 3.2,
|
|
130
|
-
V2: 6.58,
|
|
131
|
-
Q: 0.622,
|
|
132
|
-
V3: 35.6,
|
|
133
|
-
EC50: 5.41,
|
|
134
|
-
Kin: 0.272,
|
|
135
|
-
Kout: 0.276,
|
|
136
|
-
};
|
|
137
|
-
|
|
138
|
-
const CYCLIC_MODEL_OUTPUTS = 5;
|
|
139
|
-
|
|
140
|
-
const MULTISTAGE_MODEL = `#name: GA-production
|
|
141
|
-
#tags: model
|
|
142
|
-
#description: Gluconic acid (GA) production by Aspergillus niger modeling
|
|
143
|
-
#equations:
|
|
144
|
-
dX/dt = rX
|
|
145
|
-
dS/dt = -gamma * rX - lambda * X
|
|
146
|
-
dO/dt = Kla * (Cod - O) - delta * rX - phi * X
|
|
147
|
-
dP/dt = alpha * rX + beta * X
|
|
148
|
-
|
|
149
|
-
#expressions:
|
|
150
|
-
mu = muM * S / (Ks + S) * O / (Ko + O)
|
|
151
|
-
rX = mu * X
|
|
152
|
-
|
|
153
|
-
#argument: t, 1-st stage
|
|
154
|
-
_t0 = 0 {units: h; caption: initial; category: Misc} [Start of the process]
|
|
155
|
-
_t1 = 60 {units: h; caption: 1-st stage; category: Durations; min: 20; max: 80} [Duration of the 1-st stage]
|
|
156
|
-
step = 0.1 {units: h; caption: step; category: Misc; min: 0.01; max: 1} [Time step of simulation]
|
|
157
|
-
|
|
158
|
-
#update: 2-nd stage
|
|
159
|
-
duration = overall - _t1
|
|
160
|
-
S += 70
|
|
161
|
-
|
|
162
|
-
#inits:
|
|
163
|
-
X = 5 {units: kg/m³; caption: biomass; category: Initial concentrations; min: 1; max: 10} [Aspergillus niger biomass]
|
|
164
|
-
S = 150 {units: kg/m³; caption: glucose; category: Initial concentrations; min: 50; max: 200} [Glucose]
|
|
165
|
-
O = 7 {units: kg/m³; caption: oxygen; category: Initial concentrations; min: 1; max: 10} [Dissolved oxygen]
|
|
166
|
-
P = 0 {units: kg/m³; caption: acid; category: Initial concentrations; min: 0; max: 0.1} [Gluconic acid]
|
|
167
|
-
|
|
168
|
-
#output:
|
|
169
|
-
t {caption: time}
|
|
170
|
-
X {caption: biomass}
|
|
171
|
-
S {caption: glucose}
|
|
172
|
-
O {caption: oxygen}
|
|
173
|
-
P {caption: acid}
|
|
174
|
-
|
|
175
|
-
#parameters:
|
|
176
|
-
overall = 100 {units: h; category: Durations; min: 100; max: 140} [Overall duration]
|
|
177
|
-
muM = 0.668 {units: 1/h; category: Parameters} [Monod type model parameter]
|
|
178
|
-
alpha = 2.92 {category: Parameters} [Monod type model parameter]
|
|
179
|
-
beta = 0.131 {units: 1/h; category: Parameters} [Monod type model parameter]
|
|
180
|
-
gamma = 2.12 {category: Parameters} [Monod type model parameter]
|
|
181
|
-
lambda = 0.232 {units: 1/h; category: Parameters} [Monod type model parameter]
|
|
182
|
-
delta = 0.278 {category: Parameters} [Monod type model parameter]
|
|
183
|
-
phi = 4.87e-3 {units: 1/h; category: Parameters} [Monod type model parameter]
|
|
184
|
-
Ks = 1.309e2 {units: g/L; category: Parameters} [Monod type model parameter]
|
|
185
|
-
Ko = 3.63e-4 {units: g/L; category: Parameters} [Monod type model parameter]
|
|
186
|
-
Kla = 1.7e-2 {units: 1/s; category: Parameters} [Volumetric mass transfer coefficient]
|
|
187
|
-
Cod = 15 {units: kg/m³; category: Parameters} [Liquid phase dissolved oxygen saturation concentration]
|
|
188
|
-
|
|
189
|
-
#tolerance: 1e-9`;
|
|
190
|
-
|
|
191
|
-
const MULTISTAGE_MODEL_INPUTS = {
|
|
192
|
-
_t0: 0,
|
|
193
|
-
_t1: 60,
|
|
194
|
-
_h: 1,
|
|
195
|
-
X: 5,
|
|
196
|
-
S: 150,
|
|
197
|
-
O: 7,
|
|
198
|
-
P: 0,
|
|
199
|
-
overall: 100,
|
|
200
|
-
muM: 0.668,
|
|
201
|
-
alpha: 2.92,
|
|
202
|
-
beta: 0.131,
|
|
203
|
-
gamma: 2.12,
|
|
204
|
-
lambda: 0.232,
|
|
205
|
-
delta: 0.278,
|
|
206
|
-
phi: 4.87e-3,
|
|
207
|
-
Ks: 1.309e2,
|
|
208
|
-
Ko: 3.63e-4,
|
|
209
|
-
Kla: 1.7e-2,
|
|
210
|
-
Cod: 15,
|
|
211
|
-
};
|
|
212
|
-
|
|
213
|
-
const MULTISTAGE_MODEL_OUTPUTS = 5;
|
|
214
|
-
|
|
215
|
-
type TestProblem = {
|
|
216
|
-
model: string,
|
|
217
|
-
inputs: Record<string, number>,
|
|
218
|
-
outputsCount: number,
|
|
219
|
-
};
|
|
220
|
-
|
|
221
|
-
export const problems = new Map<string, TestProblem>([
|
|
222
|
-
['basic', {model: BASIC_MODEL, inputs: BASIC_MODEL_INPUTS, outputsCount: BASIC_MODEL_OUTPUTS}],
|
|
223
|
-
['cyclic', {model: CYCLIC_MODEL, inputs: CYCLIC_MODEL_INPUTS, outputsCount: CYCLIC_MODEL_OUTPUTS}],
|
|
224
|
-
['multistage', {model: MULTISTAGE_MODEL, inputs: MULTISTAGE_MODEL_INPUTS, outputsCount: MULTISTAGE_MODEL_OUTPUTS}],
|
|
225
|
-
]);
|
package/src/tests/test-utils.js
DELETED
|
@@ -1,28 +0,0 @@
|
|
|
1
|
-
import { getIVP, getIvp2WebWorker, getInputVector, getPipelineCreator, applyPipeline } from '../../index';
|
|
2
|
-
/** Return numerical solution error: maximum absolute deviation between approximate & exact solutions */
|
|
3
|
-
export function getError(method, corProb) {
|
|
4
|
-
let error = 0;
|
|
5
|
-
// Get numerical solution
|
|
6
|
-
const approxSolution = method(corProb.odes);
|
|
7
|
-
const exact = corProb.exact;
|
|
8
|
-
const arg = approxSolution[0];
|
|
9
|
-
const pointsCount = arg.length;
|
|
10
|
-
const funcsCount = approxSolution.length - 1;
|
|
11
|
-
// Compute error
|
|
12
|
-
for (let i = 0; i < pointsCount; ++i) {
|
|
13
|
-
const exactSolution = exact(arg[i]);
|
|
14
|
-
for (let j = 0; j < funcsCount; ++j)
|
|
15
|
-
error = Math.max(error, Math.abs(exactSolution[j] - approxSolution[j + 1][i]));
|
|
16
|
-
}
|
|
17
|
-
return error;
|
|
18
|
-
} // getError
|
|
19
|
-
/** Evaluate model */
|
|
20
|
-
export function evalModel(model, inputs) {
|
|
21
|
-
const ivp = getIVP(model);
|
|
22
|
-
const ivpWW = getIvp2WebWorker(ivp);
|
|
23
|
-
const inputVector = getInputVector(inputs, ivp);
|
|
24
|
-
const creator = getPipelineCreator(ivp);
|
|
25
|
-
const pipeline = creator.getPipeline(inputVector);
|
|
26
|
-
return applyPipeline(pipeline, ivpWW, inputVector);
|
|
27
|
-
} // evalModel
|
|
28
|
-
//# sourceMappingURL=test-utils.js.map
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"test-utils.js","sourceRoot":"","sources":["test-utils.ts"],"names":[],"mappings":"AAAA,OAAO,EAAoB,MAAM,EAAE,gBAAgB,EAAE,cAAc,EAAE,kBAAkB,EACrF,aAAa,EAAC,MAAM,aAAa,CAAC;AAEpC,wGAAwG;AACxG,MAAM,UAAU,QAAQ,CAAC,MAAsC,EAAE,OAAoB;IACnF,IAAI,KAAK,GAAG,CAAC,CAAC;IAEd,yBAAyB;IACzB,MAAM,cAAc,GAAG,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;IAE5C,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC;IAE5B,MAAM,GAAG,GAAG,cAAc,CAAC,CAAC,CAAC,CAAC;IAE9B,MAAM,WAAW,GAAG,GAAG,CAAC,MAAM,CAAC;IAC/B,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,GAAG,CAAC,CAAC;IAE7C,gBAAgB;IAChB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC;QACrC,MAAM,aAAa,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAEpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,EAAE,CAAC;YACjC,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC,CAAC,GAAG,cAAc,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACnF,CAAC;IAED,OAAO,KAAK,CAAC;AACf,CAAC,CAAC,WAAW;AAEb,sBAAsB;AACtB,MAAM,UAAU,SAAS,CAAC,KAAa,EAAE,MAA8B;IACrE,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC;IAC1B,MAAM,KAAK,GAAG,gBAAgB,CAAC,GAAG,CAAC,CAAC;IACpC,MAAM,WAAW,GAAG,cAAc,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC;IAChD,MAAM,OAAO,GAAG,kBAAkB,CAAC,GAAG,CAAC,CAAC;IACxC,MAAM,QAAQ,GAAG,OAAO,CAAC,WAAW,CAAC,WAAW,CAAC,CAAC;IAClD,OAAO,aAAa,CAAC,QAAQ,EAAE,KAAK,EAAE,WAAW,CAAC,CAAC;AACrD,CAAC,CAAC,YAAY"}
|
package/src/tests/test-utils.ts
DELETED
|
@@ -1,37 +0,0 @@
|
|
|
1
|
-
import {ODEs, CorrProblem, getIVP, getIvp2WebWorker, getInputVector, getPipelineCreator,
|
|
2
|
-
applyPipeline} from '../../index';
|
|
3
|
-
|
|
4
|
-
/** Return numerical solution error: maximum absolute deviation between approximate & exact solutions */
|
|
5
|
-
export function getError(method: (odes: ODEs) => Float64Array[], corProb: CorrProblem): number {
|
|
6
|
-
let error = 0;
|
|
7
|
-
|
|
8
|
-
// Get numerical solution
|
|
9
|
-
const approxSolution = method(corProb.odes);
|
|
10
|
-
|
|
11
|
-
const exact = corProb.exact;
|
|
12
|
-
|
|
13
|
-
const arg = approxSolution[0];
|
|
14
|
-
|
|
15
|
-
const pointsCount = arg.length;
|
|
16
|
-
const funcsCount = approxSolution.length - 1;
|
|
17
|
-
|
|
18
|
-
// Compute error
|
|
19
|
-
for (let i = 0; i < pointsCount; ++i) {
|
|
20
|
-
const exactSolution = exact(arg[i]);
|
|
21
|
-
|
|
22
|
-
for (let j = 0; j < funcsCount; ++j)
|
|
23
|
-
error = Math.max(error, Math.abs(exactSolution[j] - approxSolution[j + 1][i]));
|
|
24
|
-
}
|
|
25
|
-
|
|
26
|
-
return error;
|
|
27
|
-
} // getError
|
|
28
|
-
|
|
29
|
-
/** Evaluate model */
|
|
30
|
-
export function evalModel(model: string, inputs: Record<string, number>): Float64Array[] {
|
|
31
|
-
const ivp = getIVP(model);
|
|
32
|
-
const ivpWW = getIvp2WebWorker(ivp);
|
|
33
|
-
const inputVector = getInputVector(inputs, ivp);
|
|
34
|
-
const creator = getPipelineCreator(ivp);
|
|
35
|
-
const pipeline = creator.getPipeline(inputVector);
|
|
36
|
-
return applyPipeline(pipeline, ivpWW, inputVector);
|
|
37
|
-
} // evalModel
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAgB,gBAAgB,EAAC,MAAM,aAAa,CAAC;AAC5D,OAAO,EAAC,QAAQ,EAAC,MAAM,WAAW,CAAC"}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"scripting.js","sourceRoot":"","sources":["scripting.ts"],"names":[],"mappings":"AAAA,4BAA4B;AAC5B,kDAAkD;AAElD,OAAO,EAAM,WAAW,EAAE,OAAO,EAAE,UAAU,EAAC,MAAM,oCAAoC,CAAC;AAoBzF,MAAM,cAAc,GAAG,UAAU,CAAC;AAClC,MAAM,mBAAmB,GAAG,KAAK,CAAC;AAElC,4BAA4B;AAC5B,SAAS,aAAa,CAAC,IAAY;IACjC,IAAI,CAAC;QACH,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI;aACzB,UAAU,CAAC,GAAG,EAAE,GAAG,CAAC;aACpB,OAAO,CAAC,QAAQ,EAAE,UAAU,CAAC;aAC7B,OAAO,CAAC,WAAW,EAAE,aAAa,CAAC;aACnC,OAAO,CAAC,eAAe,EAAE,iBAAiB,CAAC;aAC3C,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,CACnB,CAAC;QAEF,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,OAAO;YACL,MAAM,EAAE,cAAc;YACtB,SAAS,EAAE,mBAAmB;SAC/B,CAAC;IACJ,CAAC;AACH,CAAC;AAED,4DAA4D;AAC5D,SAAS,eAAe,CAAC,GAAQ;IAC/B,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,kBAAkB;IAClB,GAAG,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,EAAE;QAChC,IAAI,GAAG,KAAK,OAAO;YACjB,KAAK,CAAC,IAAI,CAAC,SAAS,UAAU,CAAC,GAAG,CAAC,kBAAkB,UAAU,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;;YAE5E,KAAK,CAAC,IAAI,CAAC,uCAAuC,CAAC,CAAC;IACxD,CAAC,CAAC,CAAC;IAEH,mBAAmB;IACnB,GAAG,CAAC,cAAc,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,WAAW,CAAC,GAAG,CAAC,WAAW,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;IAEzG,kBAAkB;IAClB,IAAI,GAAG,CAAC,MAAM,KAAK,IAAI;QACrB,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,IAAI,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,IAAI,MAAM,KAAK,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;IAErF,gCAAgC;IAChC,KAAK,CAAC,IAAI,CAAC,SAAS,GAAG,CAAC,GAAG,CAAC,IAAI,kBAAkB,CAAC,CAAC;IACpD,GAAG,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,IAAI,mBAAmB,GAAG,IAAI,CAAC,CAAC,CAAC;IAEnG,uBAAuB;IACvB,IAAI,GAAG,CAAC,KAAK,KAAK,IAAI;QACpB,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,IAAI,MAAM,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC;IAE9E,iBAAiB;IACjB,GAAG,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,gBAAgB,GAAG,OAAO,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;IAErH,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA6FG;AACH,MAAM,UAAU,gBAAgB,CAAC,GAAQ;IACvC,MAAM,UAAU,GAAa,EAAE,CAAC;IAChC,IAAI,GAAG,CAAC,MAAM,KAAK,IAAI;QACrB,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,EAAE,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;IAEzD,MAAM,KAAK,GAAkB;QAC3B,SAAS,EAAE,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC;QAChC,UAAU,EAAE,aAAa,CAAC,GAAG,CAAC,cAAc,CAAC;QAC7C,YAAY,EAAE,eAAe,CAAC,GAAG,CAAC;QAClC,UAAU,EAAE,UAAU;QACtB,SAAS,EAAE,GAAG,CAAC,IAAI,CAAC,aAAa,CAAC,MAAM;KACzC,CAAC;IAEF,OAAO,KAAK,CAAC;AACf,CAAC;AAED,uFAAuF;AACvF,MAAM,UAAU,OAAO,CAAC,GAAkB,EAAE,SAAuB;IACjE,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,GAAG,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,IAAI,MAAM,SAAS,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;IAExF,OAAO,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AACnD,CAAC"}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"solving.js","sourceRoot":"","sources":["solving.ts"],"names":[],"mappings":"AAAA,wCAAwC;AAExC,OAAO,EAAe,GAAG,EAAE,OAAO,EAAE,QAAQ,EAAQ,WAAW,EAC7D,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,KAAK,EAAC,MAAM,iBAAiB,CAAC;AAE1D,OAAO,EAAgB,OAAO,EAAC,MAAM,aAAa,CAAC;AAEnD,MAAM,QAAQ,GAAG,CAAC,CAAC;AACnB,MAAM,SAAS,GAAG,CAAC,CAAC;AACpB,MAAM,QAAQ,GAAG,CAAC,CAAC;AACnB,MAAM,aAAa,GAAG,CAAC,CAAC;AAExB,oCAAoC;AACpC,SAAS,SAAS,CAAC,IAAwB;IACzC,QAAQ,IAAI,EAAE,CAAC;QACf,KAAK,KAAK;YACR,OAAO,GAAG,CAAC;QAEb,KAAK,SAAS;YACZ,OAAO,OAAO,CAAC;QAEjB,KAAK,KAAK;YACR,OAAO,GAAG,CAAC;QAEb,KAAK,KAAK;YACR,OAAO,GAAG,CAAC;QAEb,KAAK,KAAK;YACR,OAAO,GAAG,CAAC;QAEb,KAAK,MAAM;YACT,OAAO,IAAI,CAAC;QAEd,KAAK,KAAK;YACR,OAAO,GAAG,CAAC;QAEb,KAAK,OAAO;YACV,OAAO,KAAK,CAAC;QAEf;YACE,OAAO,QAAQ,CAAC;IAClB,CAAC;AACH,CAAC;AAED,gDAAgD;AAChD,SAAS,WAAW,CAAC,GAAkB,EAAE,MAAoB;IAC3D,MAAM,QAAQ,GAAG,aAAa,GAAG,GAAG,CAAC,SAAS,GAAG,GAAG,CAAC,UAAU,CAAC,MAAM,CAAC;IAEvE,IAAI,QAAQ,GAAG,MAAM,CAAC,MAAM;QAC1B,MAAM,IAAI,KAAK,CAAC,qCAAqC,QAAQ,cAAc,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC;AAChG,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,QAAQ,CAAC,GAAkB,EAAE,MAAoB;IAC/D,WAAW,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;IACzB,MAAM,mBAAmB,GAAG,MAAM,CAAC,MAAM,GAAG,GAAG,CAAC,UAAU,CAAC,MAAM,CAAC;IAElE,MAAM,QAAQ,GAAG,OAAO,CAAC,GAAG,EAAE,MAAM,CAAC,KAAK,CAAC,mBAAmB,CAAC,CAAC,CAAC;IACjE,MAAM,IAAI,GAAG,IAAI,QAAQ,CAAC,QAAQ,CAAS,CAAC;IAE5C,MAAM,IAAI,GAAS;QACjB,IAAI,EAAE,EAAE;QACR,GAAG,EAAE;YACH,IAAI,EAAE,EAAE;YACR,KAAK,EAAE,MAAM,CAAC,QAAQ,CAAC;YACvB,MAAM,EAAE,MAAM,CAAC,SAAS,CAAC;YACzB,IAAI,EAAE,MAAM,CAAC,QAAQ,CAAC;SACvB;QACD,OAAO,EAAE,MAAM,CAAC,KAAK,CAAC,QAAQ,GAAG,CAAC,EAAE,mBAAmB,CAAC;QACxD,IAAI,EAAE,IAAI;QACV,SAAS,EAAE,GAAG,CAAC,SAAS;QACxB,gBAAgB,EAAE,EAAE;KACrB,CAAC;IAEF,MAAM,MAAM,GAAG,SAAS,CAAC,GAAG,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC;IAChD,MAAM,QAAQ,GAAG,WAAW,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;IAE7C,OAAO,MAAM,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;AAChC,CAAC"}
|
|
@@ -1,83 +0,0 @@
|
|
|
1
|
-
// Tools for solving IVPs in web-workers
|
|
2
|
-
|
|
3
|
-
import {SolverMethod, mrt, ros3prw, ros34prw, ODEs, getCallback,
|
|
4
|
-
rk4, ab5, ab4, rkdp, rk3, lsoda} from '../solver-tools';
|
|
5
|
-
import {Func} from '../solver-tools/solver-defs';
|
|
6
|
-
import {IVP2WebWorker, getFunc} from './scripting';
|
|
7
|
-
|
|
8
|
-
const ARG_INIT = 0;
|
|
9
|
-
const ARG_FINAL = 1;
|
|
10
|
-
const ARG_STEP = 2;
|
|
11
|
-
const ARG_INP_COUNT = 3;
|
|
12
|
-
|
|
13
|
-
/** Return method for solving IVP */
|
|
14
|
-
function getMethod(name: string | undefined): SolverMethod {
|
|
15
|
-
switch (name) {
|
|
16
|
-
case 'mrt':
|
|
17
|
-
return mrt;
|
|
18
|
-
|
|
19
|
-
case 'ros3prw':
|
|
20
|
-
return ros3prw;
|
|
21
|
-
|
|
22
|
-
case 'rk4':
|
|
23
|
-
return rk4;
|
|
24
|
-
|
|
25
|
-
case 'ab5':
|
|
26
|
-
return ab5;
|
|
27
|
-
|
|
28
|
-
case 'ab4':
|
|
29
|
-
return ab4;
|
|
30
|
-
|
|
31
|
-
case 'rkdp':
|
|
32
|
-
return rkdp;
|
|
33
|
-
|
|
34
|
-
case 'rk3':
|
|
35
|
-
return rk3;
|
|
36
|
-
|
|
37
|
-
case 'lsoda':
|
|
38
|
-
return lsoda;
|
|
39
|
-
|
|
40
|
-
default:
|
|
41
|
-
return ros34prw;
|
|
42
|
-
}
|
|
43
|
-
}
|
|
44
|
-
|
|
45
|
-
/** Check the correspondence of inputs to IVP */
|
|
46
|
-
function checkInputs(ivp: IVP2WebWorker, inputs: Float64Array): void {
|
|
47
|
-
const expected = ARG_INP_COUNT + ivp.deqsCount + ivp.paramNames.length;
|
|
48
|
-
|
|
49
|
-
if (expected > inputs.length)
|
|
50
|
-
throw new Error(`Incorrect inputs count, expected: ${expected}, current: ${inputs.length}`);
|
|
51
|
-
}
|
|
52
|
-
|
|
53
|
-
/** Return solution of IVP with a specified inputs
|
|
54
|
-
* @param ivp - initial value problem to be solved
|
|
55
|
-
* @param inputs - vector of input values
|
|
56
|
-
* @returns solution of the given initial value problem
|
|
57
|
-
*/
|
|
58
|
-
export function solveIvp(ivp: IVP2WebWorker, inputs: Float64Array): Float64Array[] {
|
|
59
|
-
checkInputs(ivp, inputs);
|
|
60
|
-
const nonParamInputsCount = inputs.length - ivp.paramNames.length;
|
|
61
|
-
|
|
62
|
-
const funcCode = getFunc(ivp, inputs.slice(nonParamInputsCount));
|
|
63
|
-
const func = new Function(funcCode) as Func;
|
|
64
|
-
|
|
65
|
-
const odes: ODEs = {
|
|
66
|
-
name: '',
|
|
67
|
-
arg: {
|
|
68
|
-
name: '',
|
|
69
|
-
start: inputs[ARG_INIT],
|
|
70
|
-
finish: inputs[ARG_FINAL],
|
|
71
|
-
step: inputs[ARG_STEP],
|
|
72
|
-
},
|
|
73
|
-
initial: inputs.slice(ARG_STEP + 1, nonParamInputsCount),
|
|
74
|
-
func: func,
|
|
75
|
-
tolerance: ivp.tolerance,
|
|
76
|
-
solutionColNames: [],
|
|
77
|
-
};
|
|
78
|
-
|
|
79
|
-
const method = getMethod(ivp.solverOpts.method);
|
|
80
|
-
const callback = getCallback(ivp.solverOpts);
|
|
81
|
-
|
|
82
|
-
return method(odes, callback);
|
|
83
|
-
}
|