diff-grok 1.1.0 → 1.3.0

package/dist/src/solver-tools/cvode/cvode.js.map

@@ -0,0 +1 @@
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package/dist/src/solver-tools/cvode/cvode_adams.d.ts

@@ -0,0 +1,22 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { CvodeMem } from './common';
+/**
+ * cvSetAdams - Compute Adams method coefficients l[] and tq[]
+ */
+export declare function cvSetAdams(mem: CvodeMem): void;
+/**
+ * cvAdjustAdams - Adjust history array for Adams order change
+ */
+export declare function cvAdjustAdams(mem: CvodeMem, deltaq: number): void;

package/dist/src/solver-tools/cvode/cvode_adams.js

@@ -0,0 +1,124 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { L_MAX } from './common';
+/**
+ * cvAltSum - Alternating sum: sum_{i=0}^{iend} (-1)^i * a[i] / (i + k)
+ */
+function cvAltSum(iend, a, k) {
+    if (iend < 0)
+        return 0.0;
+    let sum = 0.0;
+    let sign = 1;
+    for (let i = 0; i <= iend; i++) {
+        sum += sign * (a[i] / (i + k));
+        sign = -sign;
+    }
+    return sum;
+}
+/**
+ * cvAdamsStart - Generate product polynomial coefficients for Adams method
+ * Returns hsum.
+ */
+function cvAdamsStart(mem, m) {
+    let hsum = mem.cv_h;
+    m[0] = 1.0;
+    for (let i = 1; i <= mem.cv_q; i++)
+        m[i] = 0.0;
+    for (let j = 1; j < mem.cv_q; j++) {
+        if (j === mem.cv_q - 1 && mem.cv_qwait === 1) {
+            const sum = cvAltSum(mem.cv_q - 2, m, 2);
+            mem.cv_tq[1] = mem.cv_q * sum / m[mem.cv_q - 2];
+        }
+        const xi_inv = mem.cv_h / hsum;
+        for (let i = j; i >= 1; i--)
+            m[i] += m[i - 1] * xi_inv;
+        hsum += mem.cv_tau[j];
+    }
+    return hsum;
+}
+/**
+ * cvAdamsFinish - Complete Adams l and tq computation
+ */
+function cvAdamsFinish(mem, m, M, hsum) {
+    const M0_inv = 1.0 / M[0];
+    mem.cv_l[0] = 1.0;
+    for (let i = 1; i <= mem.cv_q; i++)
+        mem.cv_l[i] = M0_inv * (m[i - 1] / i);
+    const xi = hsum / mem.cv_h;
+    const xi_inv = 1.0 / xi;
+    mem.cv_tq[2] = M[1] * M0_inv / xi;
+    mem.cv_tq[5] = xi / mem.cv_l[mem.cv_q];
+    if (mem.cv_qwait === 1) {
+        for (let i = mem.cv_q; i >= 1; i--)
+            m[i] += m[i - 1] * xi_inv;
+        M[2] = cvAltSum(mem.cv_q, m, 2);
+        mem.cv_tq[3] = M[2] * M0_inv / mem.cv_L;
+    }
+    mem.cv_tq[4] = mem.cv_nlscoef / mem.cv_tq[2];
+}
+/**
+ * cvSetAdams - Compute Adams method coefficients l[] and tq[]
+ */
+export function cvSetAdams(mem) {
+    const m = new Float64Array(L_MAX);
+    const M = new Float64Array(3);
+    if (mem.cv_q === 1) {
+        mem.cv_l[0] = 1.0;
+        mem.cv_l[1] = 1.0;
+        mem.cv_tq[1] = 1.0;
+        mem.cv_tq[5] = 1.0;
+        mem.cv_tq[2] = 0.5;
+        mem.cv_tq[3] = 1.0 / 12.0;
+        mem.cv_tq[4] = mem.cv_nlscoef / mem.cv_tq[2];
+        return;
+    }
+    const hsum = cvAdamsStart(mem, m);
+    M[0] = cvAltSum(mem.cv_q - 1, m, 1);
+    M[1] = cvAltSum(mem.cv_q - 1, m, 2);
+    cvAdamsFinish(mem, m, M, hsum);
+}
+/**
+ * cvAdjustAdams - Adjust history array for Adams order change
+ */
+export function cvAdjustAdams(mem, deltaq) {
+    const N = mem.cv_N;
+    if (deltaq === 1) {
+        // On order increase, set new column of zn to zero
+        mem.cv_zn[mem.cv_L].fill(0.0, 0, N);
+        return;
+    }
+    // Order decrease: adjust zn[j] by multiples of zn[q]
+    for (let i = 0; i <= mem.cv_qmax; i++)
+        mem.cv_l[i] = 0.0;
+    mem.cv_l[1] = 1.0;
+    let hsum = 0.0;
+    for (let j = 1; j <= mem.cv_q - 2; j++) {
+        hsum += mem.cv_tau[j];
+        const xi = hsum / mem.cv_hscale;
+        for (let i = j + 1; i >= 1; i--)
+            mem.cv_l[i] = mem.cv_l[i] * xi + mem.cv_l[i - 1];
+    }
+    for (let j = 1; j <= mem.cv_q - 2; j++)
+        mem.cv_l[j + 1] = mem.cv_q * (mem.cv_l[j] / (j + 1));
+    if (mem.cv_q > 2) {
+        const znq = mem.cv_zn[mem.cv_q];
+        for (let j = 2; j < mem.cv_q; j++) {
+            const c = -mem.cv_l[j];
+            const znj = mem.cv_zn[j];
+            for (let i = 0; i < N; i++)
+                znj[i] += c * znq[i];
+        }
+    }
+}
+//# sourceMappingURL=cvode_adams.js.map

package/dist/src/solver-tools/cvode/cvode_adams.js.map

@@ -0,0 +1 @@
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package/dist/src/solver-tools/cvode/cvode_bdf.d.ts

@@ -0,0 +1,37 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { CvodeMem } from './common';
+/**
+ * cvSetBDF - Compute BDF method coefficients l[] and tq[]
+ *
+ * The polynomial l(x) = l_0 + l_1*x + ... + l_q*x^q is given by:
+ *   Lambda(x) = (1 + x/xi*_q) * product_{i=1}^{q-1} (1 + x/xi_i)
+ * where xi_i = (t_n - t_{n-i}) / h
+ *
+ * The tq array holds test quantities for error and convergence tests:
+ *   tq[1] = coefficient for error at order q-1
+ *   tq[2] = coefficient for error at order q
+ *   tq[3] = coefficient for error at order q+1
+ *   tq[4] = convergence test coefficient
+ *   tq[5] = derivative for order q+2 vector
+ */
+export declare function cvSetBDF(mem: CvodeMem): void;
+/**
+ * cvIncreaseBDF - Adjust history array for BDF order increase
+ */
+export declare function cvIncreaseBDF(mem: CvodeMem): void;
+/**
+ * cvDecreaseBDF - Adjust history array for BDF order decrease
+ */
+export declare function cvDecreaseBDF(mem: CvodeMem): void;

package/dist/src/solver-tools/cvode/cvode_bdf.js

@@ -0,0 +1,153 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+/**
+ * cvSetBDF - Compute BDF method coefficients l[] and tq[]
+ *
+ * The polynomial l(x) = l_0 + l_1*x + ... + l_q*x^q is given by:
+ *   Lambda(x) = (1 + x/xi*_q) * product_{i=1}^{q-1} (1 + x/xi_i)
+ * where xi_i = (t_n - t_{n-i}) / h
+ *
+ * The tq array holds test quantities for error and convergence tests:
+ *   tq[1] = coefficient for error at order q-1
+ *   tq[2] = coefficient for error at order q
+ *   tq[3] = coefficient for error at order q+1
+ *   tq[4] = convergence test coefficient
+ *   tq[5] = derivative for order q+2 vector
+ */
+export function cvSetBDF(mem) {
+    let alpha0;
+    let alpha0_hat;
+    let xi_inv;
+    let xistar_inv;
+    let hsum;
+    mem.cv_l[0] = 1.0;
+    mem.cv_l[1] = 1.0;
+    xi_inv = 1.0;
+    xistar_inv = 1.0;
+    for (let i = 2; i <= mem.cv_q; i++)
+        mem.cv_l[i] = 0.0;
+    alpha0 = -1.0;
+    alpha0_hat = -1.0;
+    hsum = mem.cv_h;
+    if (mem.cv_q > 1) {
+        for (let j = 2; j < mem.cv_q; j++) {
+            hsum += mem.cv_tau[j - 1];
+            xi_inv = mem.cv_h / hsum;
+            alpha0 -= 1.0 / j;
+            for (let i = j; i >= 1; i--)
+                mem.cv_l[i] += mem.cv_l[i - 1] * xi_inv;
+        }
+        // j = q
+        alpha0 -= 1.0 / mem.cv_q;
+        xistar_inv = -mem.cv_l[1] - alpha0;
+        hsum += mem.cv_tau[mem.cv_q - 1];
+        xi_inv = mem.cv_h / hsum;
+        alpha0_hat = -mem.cv_l[1] - xi_inv;
+        for (let i = mem.cv_q; i >= 1; i--)
+            mem.cv_l[i] += mem.cv_l[i - 1] * xistar_inv;
+    }
+    cvSetTqBDF(mem, hsum, alpha0, alpha0_hat, xi_inv, xistar_inv);
+}
+/**
+ * cvSetTqBDF - Set test quantity array for BDF method
+ */
+function cvSetTqBDF(mem, hsum, alpha0, alpha0_hat, xi_inv, xistar_inv) {
+    const A1 = 1.0 - alpha0_hat + alpha0;
+    const A2 = 1.0 + mem.cv_q * A1;
+    mem.cv_tq[2] = Math.abs(A1 / (alpha0 * A2));
+    mem.cv_tq[5] = Math.abs(A2 * xistar_inv / (mem.cv_l[mem.cv_q] * xi_inv));
+    if (mem.cv_qwait === 1) {
+        if (mem.cv_q > 1) {
+            const C = xistar_inv / mem.cv_l[mem.cv_q];
+            const A3 = alpha0 + 1.0 / mem.cv_q;
+            const A4 = alpha0_hat + xi_inv;
+            const Cpinv = (1.0 - A4 + A3) / A3;
+            mem.cv_tq[1] = Math.abs(C * Cpinv);
+        }
+        else
+            mem.cv_tq[1] = 1.0;
+        hsum += mem.cv_tau[mem.cv_q];
+        const xi_inv2 = mem.cv_h / hsum;
+        const A5 = alpha0 - 1.0 / (mem.cv_q + 1);
+        const A6 = alpha0_hat - xi_inv2;
+        const Cppinv = (1.0 - A6 + A5) / A2;
+        mem.cv_tq[3] = Math.abs(Cppinv / (xi_inv2 * (mem.cv_q + 2) * A5));
+    }
+    mem.cv_tq[4] = mem.cv_nlscoef / mem.cv_tq[2];
+}
+/**
+ * cvIncreaseBDF - Adjust history array for BDF order increase
+ */
+export function cvIncreaseBDF(mem) {
+    const N = mem.cv_N;
+    for (let i = 0; i <= mem.cv_qmax; i++)
+        mem.cv_l[i] = 0.0;
+    mem.cv_l[2] = 1.0;
+    let alpha1 = 1.0;
+    let prod = 1.0;
+    let xiold = 1.0;
+    let alpha0 = -1.0;
+    let hsum = mem.cv_hscale;
+    if (mem.cv_q > 1) {
+        for (let j = 1; j < mem.cv_q; j++) {
+            hsum += mem.cv_tau[j + 1];
+            const xi = hsum / mem.cv_hscale;
+            prod *= xi;
+            alpha0 -= 1.0 / (j + 1);
+            alpha1 += 1.0 / xi;
+            for (let i = j + 2; i >= 2; i--)
+                mem.cv_l[i] = mem.cv_l[i] * xiold + mem.cv_l[i - 1];
+            xiold = xi;
+        }
+    }
+    const A1 = (-alpha0 - alpha1) / prod;
+    const znL = mem.cv_zn[mem.cv_L];
+    const znSaved = mem.cv_zn[mem.cv_indx_acor];
+    for (let i = 0; i < N; i++)
+        znL[i] = A1 * znSaved[i];
+    if (mem.cv_q > 1) {
+        for (let j = 2; j <= mem.cv_q; j++) {
+            const c = mem.cv_l[j];
+            const znj = mem.cv_zn[j];
+            for (let i = 0; i < N; i++)
+                znj[i] += c * znL[i];
+        }
+    }
+}
+/**
+ * cvDecreaseBDF - Adjust history array for BDF order decrease
+ */
+export function cvDecreaseBDF(mem) {
+    const N = mem.cv_N;
+    for (let i = 0; i <= mem.cv_qmax; i++)
+        mem.cv_l[i] = 0.0;
+    mem.cv_l[2] = 1.0;
+    let hsum = 0.0;
+    for (let j = 1; j <= mem.cv_q - 2; j++) {
+        hsum += mem.cv_tau[j];
+        const xi = hsum / mem.cv_hscale;
+        for (let i = j + 2; i >= 2; i--)
+            mem.cv_l[i] = mem.cv_l[i] * xi + mem.cv_l[i - 1];
+    }
+    if (mem.cv_q > 2) {
+        const znq = mem.cv_zn[mem.cv_q];
+        for (let j = 2; j < mem.cv_q; j++) {
+            const c = -mem.cv_l[j];
+            const znj = mem.cv_zn[j];
+            for (let i = 0; i < N; i++)
+                znj[i] += c * znq[i];
+        }
+    }
+}
+//# sourceMappingURL=cvode_bdf.js.map

package/dist/src/solver-tools/cvode/cvode_bdf.js.map

@@ -0,0 +1 @@
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package/dist/src/solver-tools/cvode/cvode_class.d.ts

@@ -0,0 +1,116 @@
+/**
+ * TypeScript port of SUNDIALS CVODE v7.5.0 (https://github.com/LLNL/sundials)
+ *
+ * Copyright (c) 2025, Lawrence Livermore National Security, University of
+ *   Maryland Baltimore County, and the SUNDIALS contributors.
+ * Copyright (c) 2013-2025, Lawrence Livermore National Security and
+ *   Southern Methodist University.
+ * Copyright (c) 2002-2013, Lawrence Livermore National Security.
+ * Copyright (c) 2026 Datagrok.
+ *
+ * Licensed under the BSD-3-Clause License. See THIRD_PARTY_LICENSES
+ * for the full license text and provenance chain of the original code.
+ */
+import { CvodeStats } from './cvode_io';
+/**
+ * User ODE function: y' = f(t, y).
+ * Arrays are 0-based. Return value is void; wrapping to int is done internally.
+ */
+export type OdeFunction = (t: number, y: Float64Array, ydot: Float64Array) => void;
+/**
+ * Options for the Cvode solver.
+ */
+export interface CvodeOptions {
+    /** Linear multistep method: 'adams' (non-stiff) or 'bdf' (stiff). Default: 'bdf'. */
+    lmm?: 'adams' | 'bdf';
+    /** Relative tolerance. Default: 1e-4. */
+    rtol?: number;
+    /** Absolute tolerance: scalar or per-component array. Default: 1e-6. */
+    atol?: number | Float64Array;
+    /** Maximum number of internal steps per cvode() call. */
+    maxSteps?: number;
+    /** Maximum method order. */
+    maxOrder?: number;
+    /** Maximum step size (0 = no limit). */
+    maxStep?: number;
+    /** Minimum step size. */
+    minStep?: number;
+    /** Initial step size (0 = auto-select). */
+    initStep?: number;
+    /** Stop time: integration will not proceed past this value. */
+    stopTime?: number;
+    /** Root function: g(t, y, gout). */
+    rootFn?: (t: number, y: Float64Array, gout: Float64Array) => void;
+    /** Number of root functions (required when rootFn is provided). */
+    nRootFns?: number;
+    /** User-supplied Jacobian function: J = df/dy. */
+    jacFn?: (t: number, y: Float64Array, fy: Float64Array, J: Float64Array[]) => void;
+    /** Arbitrary user data (passed as context, not forwarded to callbacks). */
+    userData?: any;
+}
+/**
+ * Result returned by solve() and step().
+ */
+export interface CvodeSolveResult {
+    /** Time reached by the solver. */
+    t: number;
+    /** Solution vector at time t (0-based, copy). */
+    y: Float64Array;
+    /** Solver flag (CV_SUCCESS=0, CV_ROOT_RETURN=2, CV_TSTOP_RETURN=1, negative=error). */
+    flag: number;
+    /** Root indices found when flag === CV_ROOT_RETURN. */
+    rootsFound?: Int32Array;
+}
+/**
+ * High-level CVODE solver class with a 0-based public interface.
+ *
+ * Usage:
+ *   const solver = new Cvode(f, neq, t0, y0, { lmm: 'bdf', rtol: 1e-6, atol: 1e-9 });
+ *   const result = solver.solve(tout);
+ */
+export declare class Cvode {
+    private mem;
+    private neq;
+    /** Output vector reused across calls (0-based, neq elements). */
+    private yout;
+    /** Wrapped RHS stored to allow re-initialization. */
+    private wrappedF;
+    constructor(f: OdeFunction, neq: number, t0: number, y0: Float64Array, options?: CvodeOptions);
+    /**
+     * Integrate from the current time to tout using CV_NORMAL mode
+     * (integrator advances to tout and interpolates).
+     *
+     * @param tout - target output time
+     * @returns CvodeSolveResult with { t, y, flag, rootsFound? }
+     */
+    solve(tout: number): CvodeSolveResult;
+    /**
+     * Take a single internal step using CV_ONE_STEP mode.
+     * The solver advances by one internal step of whatever size it chooses.
+     *
+     * @returns CvodeSolveResult with { t, y, flag, rootsFound? }
+     */
+    step(): CvodeSolveResult;
+    /**
+     * Dense output: compute the k-th derivative of the interpolating polynomial
+     * at time t using the current Nordsieck history array.
+     *
+     * @param t - interpolation time (must be within the last step interval)
+     * @param k - derivative order (0 = solution, 1 = first derivative, ...)
+     * @returns copy of the interpolated vector (length neq)
+     */
+    getDky(t: number, k: number): Float64Array;
+    /**
+     * Return current integrator statistics.
+     */
+    getStats(): CvodeStats;
+    /**
+     * Re-initialize the solver for a new initial-value problem with the same
+     * ODE function and options. Resets internal state and counters.
+     *
+     * @param t0 - new initial time
+     * @param y0 - new initial conditions (length neq)
+     */
+    reInit(t0: number, y0: Float64Array): void;
+    private _buildResult;
+}