diff-grok 1.1.0 → 1.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (487) hide show
  1. package/LICENSE +1 -1
  2. package/README.MD +80 -31
  3. package/dist/index.d.ts +6 -0
  4. package/{index.js → dist/index.js} +2 -1
  5. package/dist/index.js.map +1 -0
  6. package/dist/src/examples/basic-use.d.ts +10 -0
  7. package/dist/src/examples/basic-use.js.map +1 -0
  8. package/dist/src/examples/check-methods.d.ts +1 -0
  9. package/{src → dist/src}/examples/check-methods.js +15 -3
  10. package/dist/src/examples/check-methods.js.map +1 -0
  11. package/dist/src/examples/corr-probs.d.ts +15 -0
  12. package/{src → dist/src}/examples/corr-probs.js +2 -2
  13. package/dist/src/examples/corr-probs.js.map +1 -0
  14. package/dist/src/examples/cyclic-model.d.ts +6 -0
  15. package/dist/src/examples/cyclic-model.js.map +1 -0
  16. package/dist/src/examples/e5.d.ts +15 -0
  17. package/dist/src/examples/e5.js.map +1 -0
  18. package/dist/src/examples/hires.d.ts +15 -0
  19. package/dist/src/examples/hires.js.map +1 -0
  20. package/dist/src/examples/index.d.ts +22 -0
  21. package/dist/src/examples/index.js.map +1 -0
  22. package/dist/src/examples/model-updates.d.ts +6 -0
  23. package/dist/src/examples/model-updates.js.map +1 -0
  24. package/dist/src/examples/orego.d.ts +15 -0
  25. package/dist/src/examples/orego.js.map +1 -0
  26. package/dist/src/examples/pipeline-use.d.ts +6 -0
  27. package/dist/src/examples/pipeline-use.js.map +1 -0
  28. package/dist/src/examples/pollution.d.ts +15 -0
  29. package/dist/src/examples/pollution.js.map +1 -0
  30. package/{src/examples/print-benchmark.ts → dist/src/examples/print-benchmark.d.ts} +8 -58
  31. package/dist/src/examples/print-benchmark.js.map +1 -0
  32. package/dist/src/examples/robertson.d.ts +15 -0
  33. package/{src → dist/src}/examples/robertson.js +2 -2
  34. package/dist/src/examples/robertson.js.map +1 -0
  35. package/dist/src/examples/scripting.d.ts +1 -0
  36. package/dist/src/examples/scripting.js.map +1 -0
  37. package/dist/src/examples/vdpol.d.ts +15 -0
  38. package/dist/src/examples/vdpol.js.map +1 -0
  39. package/dist/src/latex-export/examples/advanced-to-latex.d.ts +2 -0
  40. package/dist/src/latex-export/examples/advanced-to-latex.js +41 -0
  41. package/dist/src/latex-export/examples/advanced-to-latex.js.map +1 -0
  42. package/dist/src/latex-export/examples/basic-to-latex.d.ts +2 -0
  43. package/dist/src/latex-export/examples/basic-to-latex.js +17 -0
  44. package/dist/src/latex-export/examples/basic-to-latex.js.map +1 -0
  45. package/dist/src/latex-export/examples/bioreactor-to-latex-selective.d.ts +2 -0
  46. package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js +145 -0
  47. package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js.map +1 -0
  48. package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.d.ts +2 -0
  49. package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js +41 -0
  50. package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js.map +1 -0
  51. package/dist/src/latex-export/examples/energy-n-control-to-markdown.d.ts +2 -0
  52. package/dist/src/latex-export/examples/energy-n-control-to-markdown.js +58 -0
  53. package/dist/src/latex-export/examples/energy-n-control-to-markdown.js.map +1 -0
  54. package/dist/src/latex-export/examples/extended-to-markdown.d.ts +2 -0
  55. package/dist/src/latex-export/examples/extended-to-markdown.js +37 -0
  56. package/dist/src/latex-export/examples/extended-to-markdown.js.map +1 -0
  57. package/dist/src/latex-export/examples/fermentation-to-latex.d.ts +2 -0
  58. package/dist/src/latex-export/examples/fermentation-to-latex.js +32 -0
  59. package/dist/src/latex-export/examples/fermentation-to-latex.js.map +1 -0
  60. package/dist/src/latex-export/examples/ga-production-to-markdown.d.ts +2 -0
  61. package/dist/src/latex-export/examples/ga-production-to-markdown.js +58 -0
  62. package/dist/src/latex-export/examples/ga-production-to-markdown.js.map +1 -0
  63. package/dist/src/latex-export/examples/nimotuzumab-to-latex.d.ts +2 -0
  64. package/dist/src/latex-export/examples/nimotuzumab-to-latex.js +53 -0
  65. package/dist/src/latex-export/examples/nimotuzumab-to-latex.js.map +1 -0
  66. package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.d.ts +2 -0
  67. package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js +50 -0
  68. package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js.map +1 -0
  69. package/dist/src/latex-export/examples/pk-to-markdown.d.ts +2 -0
  70. package/dist/src/latex-export/examples/pk-to-markdown.js +35 -0
  71. package/dist/src/latex-export/examples/pk-to-markdown.js.map +1 -0
  72. package/dist/src/latex-export/examples/pollution-to-latex.d.ts +2 -0
  73. package/dist/src/latex-export/examples/pollution-to-latex.js +141 -0
  74. package/dist/src/latex-export/examples/pollution-to-latex.js.map +1 -0
  75. package/dist/src/latex-export/examples/robertson-to-latex-no-meta.d.ts +2 -0
  76. package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js +25 -0
  77. package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js.map +1 -0
  78. package/dist/src/latex-export/generator/bracket-manager.d.ts +19 -0
  79. package/dist/src/latex-export/generator/bracket-manager.js +58 -0
  80. package/dist/src/latex-export/generator/bracket-manager.js.map +1 -0
  81. package/dist/src/latex-export/generator/document-builder.d.ts +13 -0
  82. package/dist/src/latex-export/generator/document-builder.js +433 -0
  83. package/dist/src/latex-export/generator/document-builder.js.map +1 -0
  84. package/dist/src/latex-export/generator/latex-generator.d.ts +23 -0
  85. package/dist/src/latex-export/generator/latex-generator.js +176 -0
  86. package/dist/src/latex-export/generator/latex-generator.js.map +1 -0
  87. package/dist/src/latex-export/index.d.ts +8 -0
  88. package/dist/src/latex-export/index.js +25 -0
  89. package/dist/src/latex-export/index.js.map +1 -0
  90. package/dist/src/latex-export/output/md-formatter.d.ts +16 -0
  91. package/dist/src/latex-export/output/md-formatter.js +27 -0
  92. package/dist/src/latex-export/output/md-formatter.js.map +1 -0
  93. package/dist/src/latex-export/output/tex-formatter.d.ts +5 -0
  94. package/dist/src/latex-export/output/tex-formatter.js +20 -0
  95. package/dist/src/latex-export/output/tex-formatter.js.map +1 -0
  96. package/dist/src/latex-export/parser/ast-parser.d.ts +7 -0
  97. package/dist/src/latex-export/parser/ast-parser.js +153 -0
  98. package/dist/src/latex-export/parser/ast-parser.js.map +1 -0
  99. package/dist/src/latex-export/parser/ivp-parser.d.ts +6 -0
  100. package/dist/src/latex-export/parser/ivp-parser.js +219 -0
  101. package/dist/src/latex-export/parser/ivp-parser.js.map +1 -0
  102. package/dist/src/latex-export/parser/line-joiner.d.ts +25 -0
  103. package/dist/src/latex-export/parser/line-joiner.js +80 -0
  104. package/dist/src/latex-export/parser/line-joiner.js.map +1 -0
  105. package/dist/src/latex-export/parser/tokenizer.d.ts +7 -0
  106. package/dist/src/latex-export/parser/tokenizer.js +143 -0
  107. package/dist/src/latex-export/parser/tokenizer.js.map +1 -0
  108. package/dist/src/latex-export/transformer/functions.d.ts +12 -0
  109. package/dist/src/latex-export/transformer/functions.js +47 -0
  110. package/dist/src/latex-export/transformer/functions.js.map +1 -0
  111. package/dist/src/latex-export/transformer/identifier.d.ts +23 -0
  112. package/dist/src/latex-export/transformer/identifier.js +194 -0
  113. package/dist/src/latex-export/transformer/identifier.js.map +1 -0
  114. package/dist/src/latex-export/transformer/operators.d.ts +9 -0
  115. package/dist/src/latex-export/transformer/operators.js +41 -0
  116. package/dist/src/latex-export/transformer/operators.js.map +1 -0
  117. package/dist/src/latex-export/types.d.ts +122 -0
  118. package/dist/src/latex-export/types.js +10 -0
  119. package/dist/src/latex-export/types.js.map +1 -0
  120. package/{src/pipeline/basic-pipeline-creator.ts → dist/src/pipeline/basic-pipeline-creator.d.ts} +11 -28
  121. package/dist/src/pipeline/basic-pipeline-creator.js.map +1 -0
  122. package/dist/src/pipeline/constants.d.ts +14 -0
  123. package/dist/src/pipeline/constants.js.map +1 -0
  124. package/dist/src/pipeline/index.d.ts +7 -0
  125. package/dist/src/pipeline/index.js.map +1 -0
  126. package/dist/src/pipeline/input.d.ts +3 -0
  127. package/dist/src/pipeline/input.js.map +1 -0
  128. package/dist/src/pipeline/loops-pipeline-creator.d.ts +124 -0
  129. package/dist/src/pipeline/loops-pipeline-creator.js.map +1 -0
  130. package/dist/src/pipeline/output.d.ts +10 -0
  131. package/{src → dist/src}/pipeline/output.js +1 -1
  132. package/dist/src/pipeline/output.js.map +1 -0
  133. package/dist/src/pipeline/pipeline-creator.d.ts +12 -0
  134. package/{src → dist/src}/pipeline/pipeline-creator.js +2 -0
  135. package/dist/src/pipeline/pipeline-creator.js.map +1 -0
  136. package/{src/pipeline/pipeline.ts → dist/src/pipeline/pipeline.d.ts} +10 -97
  137. package/dist/src/pipeline/pipeline.js.map +1 -0
  138. package/{src/pipeline/updates-pipeline-creator.ts → dist/src/pipeline/updates-pipeline-creator.d.ts} +15 -131
  139. package/dist/src/pipeline/updates-pipeline-creator.js.map +1 -0
  140. package/dist/src/scripting-tools/constants.d.ts +59 -0
  141. package/dist/src/scripting-tools/constants.js.map +1 -0
  142. package/dist/src/scripting-tools/index.d.ts +3 -0
  143. package/dist/src/scripting-tools/index.js.map +1 -0
  144. package/dist/src/scripting-tools/model-error.d.ts +10 -0
  145. package/{src → dist/src}/scripting-tools/model-error.js +2 -1
  146. package/dist/src/scripting-tools/model-error.js.map +1 -0
  147. package/dist/src/scripting-tools/scripting-tools.d.ts +277 -0
  148. package/{src → dist/src}/scripting-tools/scripting-tools.js +2 -4
  149. package/dist/src/scripting-tools/scripting-tools.js.map +1 -0
  150. package/dist/src/solver-tools/ab4-method.d.ts +46 -0
  151. package/{src → dist/src}/solver-tools/ab4-method.js +3 -3
  152. package/dist/src/solver-tools/ab4-method.js.map +1 -0
  153. package/dist/src/solver-tools/ab5-method.d.ts +46 -0
  154. package/{src → dist/src}/solver-tools/ab5-method.js +3 -3
  155. package/dist/src/solver-tools/ab5-method.js.map +1 -0
  156. package/dist/src/solver-tools/callbacks/callback-base.d.ts +8 -0
  157. package/dist/src/solver-tools/callbacks/callback-base.js.map +1 -0
  158. package/dist/src/solver-tools/callbacks/callback-tools.d.ts +6 -0
  159. package/dist/src/solver-tools/callbacks/callback-tools.js.map +1 -0
  160. package/dist/src/solver-tools/callbacks/iter-checker-callback.d.ts +12 -0
  161. package/{src → dist/src}/solver-tools/callbacks/iter-checker-callback.js +2 -0
  162. package/dist/src/solver-tools/callbacks/iter-checker-callback.js.map +1 -0
  163. package/dist/src/solver-tools/callbacks/time-checker-callback.d.ts +12 -0
  164. package/{src → dist/src}/solver-tools/callbacks/time-checker-callback.js +2 -2
  165. package/dist/src/solver-tools/callbacks/time-checker-callback.js.map +1 -0
  166. package/dist/src/solver-tools/cvode/common.d.ts +395 -0
  167. package/dist/src/solver-tools/cvode/common.js +483 -0
  168. package/dist/src/solver-tools/cvode/common.js.map +1 -0
  169. package/dist/src/solver-tools/cvode/cvode.d.ts +23 -0
  170. package/dist/src/solver-tools/cvode/cvode.js +1062 -0
  171. package/dist/src/solver-tools/cvode/cvode.js.map +1 -0
  172. package/dist/src/solver-tools/cvode/cvode_adams.d.ts +22 -0
  173. package/dist/src/solver-tools/cvode/cvode_adams.js +124 -0
  174. package/dist/src/solver-tools/cvode/cvode_adams.js.map +1 -0
  175. package/dist/src/solver-tools/cvode/cvode_bdf.d.ts +37 -0
  176. package/dist/src/solver-tools/cvode/cvode_bdf.js +153 -0
  177. package/dist/src/solver-tools/cvode/cvode_bdf.js.map +1 -0
  178. package/dist/src/solver-tools/cvode/cvode_class.d.ts +116 -0
  179. package/dist/src/solver-tools/cvode/cvode_class.js +163 -0
  180. package/dist/src/solver-tools/cvode/cvode_class.js.map +1 -0
  181. package/dist/src/solver-tools/cvode/cvode_hin.d.ts +24 -0
  182. package/dist/src/solver-tools/cvode/cvode_hin.js +119 -0
  183. package/dist/src/solver-tools/cvode/cvode_hin.js.map +1 -0
  184. package/dist/src/solver-tools/cvode/cvode_io.d.ts +98 -0
  185. package/dist/src/solver-tools/cvode/cvode_io.js +202 -0
  186. package/dist/src/solver-tools/cvode/cvode_io.js.map +1 -0
  187. package/dist/src/solver-tools/cvode/cvode_ls.d.ts +23 -0
  188. package/dist/src/solver-tools/cvode/cvode_ls.js +210 -0
  189. package/dist/src/solver-tools/cvode/cvode_ls.js.map +1 -0
  190. package/dist/src/solver-tools/cvode/cvode_nls.d.ts +25 -0
  191. package/dist/src/solver-tools/cvode/cvode_nls.js +220 -0
  192. package/dist/src/solver-tools/cvode/cvode_nls.js.map +1 -0
  193. package/dist/src/solver-tools/cvode/cvode_root.d.ts +64 -0
  194. package/dist/src/solver-tools/cvode/cvode_root.js +415 -0
  195. package/dist/src/solver-tools/cvode/cvode_root.js.map +1 -0
  196. package/dist/src/solver-tools/cvode/dense_linalg.d.ts +50 -0
  197. package/dist/src/solver-tools/cvode/dense_linalg.js +131 -0
  198. package/dist/src/solver-tools/cvode/dense_linalg.js.map +1 -0
  199. package/dist/src/solver-tools/cvode/index.d.ts +24 -0
  200. package/dist/src/solver-tools/cvode/index.js +26 -0
  201. package/dist/src/solver-tools/cvode/index.js.map +1 -0
  202. package/dist/src/solver-tools/cvode-method.d.ts +47 -0
  203. package/dist/src/solver-tools/cvode-method.js +114 -0
  204. package/dist/src/solver-tools/cvode-method.js.map +1 -0
  205. package/dist/src/solver-tools/index.d.ts +16 -0
  206. package/{src → dist/src}/solver-tools/index.js +1 -0
  207. package/dist/src/solver-tools/index.js.map +1 -0
  208. package/dist/src/solver-tools/lin-alg-tools.d.ts +6 -0
  209. package/dist/src/solver-tools/lin-alg-tools.js.map +1 -0
  210. package/dist/src/solver-tools/lsoda/blas.d.ts +59 -0
  211. package/{src → dist/src}/solver-tools/lsoda/blas.js +11 -0
  212. package/dist/src/solver-tools/lsoda/blas.js.map +1 -0
  213. package/dist/src/solver-tools/lsoda/cfode.d.ts +18 -0
  214. package/{src → dist/src}/solver-tools/lsoda/cfode.js +11 -0
  215. package/dist/src/solver-tools/lsoda/cfode.js.map +1 -0
  216. package/dist/src/solver-tools/lsoda/common.d.ts +85 -0
  217. package/dist/src/solver-tools/lsoda/common.js +96 -0
  218. package/dist/src/solver-tools/lsoda/common.js.map +1 -0
  219. package/dist/src/solver-tools/lsoda/corfailure.d.ts +18 -0
  220. package/{src → dist/src}/solver-tools/lsoda/corfailure.js +11 -0
  221. package/dist/src/solver-tools/lsoda/corfailure.js.map +1 -0
  222. package/dist/src/solver-tools/lsoda/correction.d.ts +23 -0
  223. package/{src → dist/src}/solver-tools/lsoda/correction.js +11 -0
  224. package/dist/src/solver-tools/lsoda/correction.js.map +1 -0
  225. package/dist/src/solver-tools/lsoda/dense.d.ts +47 -0
  226. package/{src → dist/src}/solver-tools/lsoda/dense.js +13 -0
  227. package/dist/src/solver-tools/lsoda/dense.js.map +1 -0
  228. package/dist/src/solver-tools/lsoda/index.d.ts +16 -0
  229. package/dist/src/solver-tools/lsoda/index.js +15 -0
  230. package/dist/src/solver-tools/lsoda/index.js.map +1 -0
  231. package/dist/src/solver-tools/lsoda/intdy.d.ts +19 -0
  232. package/{src → dist/src}/solver-tools/lsoda/intdy.js +11 -0
  233. package/dist/src/solver-tools/lsoda/intdy.js.map +1 -0
  234. package/dist/src/solver-tools/lsoda/lsoda.d.ts +66 -0
  235. package/{src → dist/src}/solver-tools/lsoda/lsoda.js +24 -5
  236. package/dist/src/solver-tools/lsoda/lsoda.js.map +1 -0
  237. package/dist/src/solver-tools/lsoda/methodswitch.d.ts +21 -0
  238. package/{src → dist/src}/solver-tools/lsoda/methodswitch.js +11 -0
  239. package/dist/src/solver-tools/lsoda/methodswitch.js.map +1 -0
  240. package/dist/src/solver-tools/lsoda/orderswitch.d.ts +21 -0
  241. package/{src → dist/src}/solver-tools/lsoda/orderswitch.js +11 -0
  242. package/dist/src/solver-tools/lsoda/orderswitch.js.map +1 -0
  243. package/dist/src/solver-tools/lsoda/prja.d.ts +18 -0
  244. package/{src → dist/src}/solver-tools/lsoda/prja.js +11 -0
  245. package/dist/src/solver-tools/lsoda/prja.js.map +1 -0
  246. package/dist/src/solver-tools/lsoda/scaleh.d.ts +16 -0
  247. package/{src → dist/src}/solver-tools/lsoda/scaleh.js +11 -0
  248. package/dist/src/solver-tools/lsoda/scaleh.js.map +1 -0
  249. package/dist/src/solver-tools/lsoda/solsy.d.ts +17 -0
  250. package/dist/src/solver-tools/lsoda/solsy.js +25 -0
  251. package/dist/src/solver-tools/lsoda/solsy.js.map +1 -0
  252. package/dist/src/solver-tools/lsoda/stoda.d.ts +19 -0
  253. package/{src → dist/src}/solver-tools/lsoda/stoda.js +11 -0
  254. package/dist/src/solver-tools/lsoda/stoda.js.map +1 -0
  255. package/dist/src/solver-tools/lsoda-method.d.ts +46 -0
  256. package/{src → dist/src}/solver-tools/lsoda-method.js +23 -9
  257. package/dist/src/solver-tools/lsoda-method.js.map +1 -0
  258. package/dist/src/solver-tools/mrt-method.d.ts +47 -0
  259. package/{src → dist/src}/solver-tools/mrt-method.js +2 -2
  260. package/dist/src/solver-tools/mrt-method.js.map +1 -0
  261. package/dist/src/solver-tools/rk3-method.d.ts +46 -0
  262. package/{src → dist/src}/solver-tools/rk3-method.js +2 -2
  263. package/dist/src/solver-tools/rk3-method.js.map +1 -0
  264. package/dist/src/solver-tools/rk4-method.d.ts +46 -0
  265. package/{src → dist/src}/solver-tools/rk4-method.js +2 -2
  266. package/dist/src/solver-tools/rk4-method.js.map +1 -0
  267. package/dist/src/solver-tools/rkdp-method.d.ts +46 -0
  268. package/{src → dist/src}/solver-tools/rkdp-method.js +2 -2
  269. package/dist/src/solver-tools/rkdp-method.js.map +1 -0
  270. package/dist/src/solver-tools/ros34prw-method.d.ts +46 -0
  271. package/{src → dist/src}/solver-tools/ros34prw-method.js +2 -2
  272. package/dist/src/solver-tools/ros34prw-method.js.map +1 -0
  273. package/dist/src/solver-tools/ros3prw-method.d.ts +46 -0
  274. package/{src → dist/src}/solver-tools/ros3prw-method.js +2 -2
  275. package/dist/src/solver-tools/ros3prw-method.js.map +1 -0
  276. package/{src/solver-tools/solver-defs.ts → dist/src/solver-tools/solver-defs.d.ts} +45 -84
  277. package/{src → dist/src}/solver-tools/solver-defs.js +1 -0
  278. package/dist/src/solver-tools/solver-defs.js.map +1 -0
  279. package/dist/src/worker-tools/index.d.ts +2 -0
  280. package/dist/src/worker-tools/index.js.map +1 -0
  281. package/{src/worker-tools/scripting.ts → dist/src/worker-tools/scripting.d.ts} +9 -91
  282. package/dist/src/worker-tools/scripting.js.map +1 -0
  283. package/dist/src/worker-tools/solving.d.ts +7 -0
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  285. package/dist/src/worker-tools/solving.js.map +1 -0
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  287. package/.claude/settings.local.json +0 -11
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@@ -1,305 +0,0 @@
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- name: Libraries
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- on:
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-
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- common-check:
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- name: Common checks
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- uses: datagrok-ai/public/.github/workflows/common_check.yaml@master
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- with:
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- run_trigger: ${{ github.event_name }}
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- metadata:
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- name: Check changes
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- needs: common-check
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- runs-on: ubuntu-22.04
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- if: needs.common-check.outputs.continue == 'true'
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- outputs:
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- publish_matrix: ${{ steps.generate-matrix.outputs.publish_matrix }}
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- continue: ${{ steps.generate-matrix.outputs.continue }}
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- steps:
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- - name: Set git fetch depth
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- run: |
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- if [[ ${{ github.event_name }} != 'pull_request' ]]; then
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- fi
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- - name: Checkout
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- uses: actions/checkout@v4
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- MATRIX_PUBLISH_JSON="["
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- current_version="$(jq -r '.version' "./package.json")"
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- MATRIX_PUBLISH_JSON+=", \"version\": \"${current_version}\""
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-
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- scripts="$(jq '. | select( has("scripts") == true ).scripts' "./package.json")"
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- fi
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- if [ ! -z "$(jq '. | select( has("test") == true )' <<< "$scripts")" ]; then
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- npm_version="$(curl --retry 3 -s "https://registry.npmjs.org/${name}/${current_version}" | jq -r '.? | select( has("version") == true ).version')"
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- unpublished_deps="$(jq -r '. | to_entries | map(select(.value | match("\\.\\./.*")))[] | "\(.key)=\(.value)"' <<<$dependencies | tr '\n' ' ')"
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- MATRIX_PUBLISH_JSON+=", \"unpublished_deps\": \"$unpublished_deps\""
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- if [[ "${{ github.event_name }}" != "pull_request" ]]; then
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- if [[ $npm_version != ${current_version} ]]; then
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- if [[ $unpublished_deps == "" ]] && [[ ${{ github.ref }} == 'refs/heads/main' ]]; then
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- packages=$(grep -l "$name" packages/*/package.json | awk -F'/' '{printf ("%s ", $2)}' | sort -u)
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- MATRIX_PUBLISH_JSON+=", \"packages\": \"$packages\""
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- job_name+=' and publish to NPM'
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- else
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- echo "Library $LIB version ${current_version} has unpublished dependencies: $unpublished_deps"
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- MATRIX_PUBLISH_JSON+=", \"job_name\": \"${job_name}\""
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- MATRIX_PUBLISH_JSON+="}"
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- fi
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-
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- MATRIX_PUBLISH_JSON="${MATRIX_PUBLISH_JSON//\}\{/\}, \{}"
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- needs: [ metadata, common-check ]
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-
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- run: npm run build
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- if: ${{ matrix.build == 'build' }}
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- # - id: datagrok-tools
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- # run: npm install -g datagrok-tools@latest
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- # - run: grok check
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- # id: grok_check
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- #
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- #
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- # if: ${{ matrix.test == 'test' }}
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- - name: npm publish
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- id: publish
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- run: npm publish --access public
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- if: matrix.publish == 'publish'
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- env:
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- NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }}
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-
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- - name: Get actors slack
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- id: actor
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- uses: datagrok-ai/public/.github/actions/slack-user-action@master
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- with:
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- slack-token: ${{ secrets.SLACKBOT_TOKEN }}
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- email-mapping: ${{ secrets.EMAIL_SLACK_ID }}
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- - name: Get owner email
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- run: echo "owner=$(jq -r .author.email package.json)" >> $GITHUB_OUTPUT
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- id: owner-email
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-
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- id: owner
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- uses: datagrok-ai/public/.github/actions/slack-user-action@master
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- with:
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- emails: ${{ steps.owner-email.outputs.owner }}
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- id: slack-prepare
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- shell: bash
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- run: |
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- mentions=$(echo -e "${{ steps.actor.outputs.user-ids }}\n${{ steps.owner.outputs.user-ids }}" | sort -u)
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- header="Library *${{ matrix.project }}* version *${{ matrix.version }}* published to <https://www.npmjs.com/package/$(jq -r .name "./package.json")/v/${{ matrix.version }}|NPM>\n$(for value in $mentions; do echo -n "<@$value> "; done) FYI"
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- echo "SLACK_MESSAGE_HEADER=$header" >> $GITHUB_ENV
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- - name: Send to Slack
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- id: slack
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- if: steps.slack-prepare.outcome == 'success'
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- uses: datagrok-ai/public/.github/actions/slack-post-action@master
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- slack-token: ${{ secrets.SLACKBOT_TOKEN }}
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- message: ${{ env.SLACK_MESSAGE_HEADER }}
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-
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- # - name: Commit package-lock.json
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- # continue-on-error: true
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- # if: steps.publish.outcome == 'success' || steps.package-lock.outcome == 'success'
209
- # run: |
210
- # if [ -n "$(git status -s ./package-lock.json)" ]; then
211
- # git config --global user.name 'github-actions[bot]'
212
- # git config --global user.email 'github-actions[bot]@users.noreply.github.com'
213
- # git pull
214
- # git add ./package-lock.json
215
- # skip_ci=""
216
- # if [ ${{ github.ref }} == 'refs/heads/main' ]; then
217
- # skip_ci="[skip ci]"
218
- # fi
219
- # git commit -m "GitHub Actions: Update package-lock.json $skip_ci
220
- #
221
- # Workflow ${{ github.workflow }} ${{ github.run_number }}
222
- # https://github.com/datagrok-ai/public/actions/runs/${{ github.run_id }}"
223
- # count=0
224
- # retries=10
225
- # until git push; do
226
- # exit=$?
227
- # wait=$((2 ** count))
228
- # count=$((count + 1))
229
- # if [ $count -lt "$retries" ]; then
230
- # echo "Retry $count/$retries exited $exit, retrying 'git push' in $wait seconds..."
231
- # sleep $wait
232
- # git pull --rebase
233
- # else
234
- # echo "Retry $count/$retries exited $exit, no more retries left for 'git push'."
235
- # exit $exit
236
- # fi
237
- # done
238
- # fi
239
- # - name: Check packages
240
- # if: ${{ matrix.packages != '' }}
241
- # id: commit
242
- # run: |
243
- # name="$(jq -r '.name' "./package.json")"
244
- # echo "name=$name" >> $GITHUB_OUTPUT
245
- # author="$(jq -r '.author.email' "./package.json")"
246
- # echo "author=$author" >> $GITHUB_OUTPUT
247
- # crnt=$(pwd)
248
- # git config --global user.name 'github-actions[bot]'
249
- # git config --global user.email 'github-actions[bot]@users.noreply.github.com'
250
- # git pull
251
- # changed=""
252
- # for package in ${{ matrix.packages }}; do
253
- # cd packages/$package
254
- # sed -i -e 's#"${name}": "../../libraries/${{ matrix.project }}"#"${name}": "^${{ matrix.version }}"#g' package.json
255
- # if [ -n "$(git status -s package.json)" ]; then
256
- # changed+="$package "
257
- # npm install
258
- # git add package.json
259
- # git add package-lock.json
260
- # git commit -m "GitHub Actions: Update package $package ${name} dependency
261
- #
262
- # Workflow ${{ github.workflow }} ${{ github.run_number }}
263
- # https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}"
264
- # fi
265
- # cd $crnt
266
- # done
267
- # echo "changed=$changed" >> $GITHUB_OUTPUT
268
- # if [ -n "$(git log @{u}..)" ]; then
269
- # count=0
270
- # until git push; do
271
- # exit=$?
272
- # wait=$((2 ** count))
273
- # count=$((count + 1))
274
- # if [ $count -lt "10" ]; then
275
- # echo "Retry $count/$retries exited $exit, retrying 'git push' in $wait seconds..."
276
- # sleep $wait
277
- # git pull --rebase
278
- # else
279
- # echo "Retry $count/$retries exited $exit, no more retries left for 'git push'."
280
- # exit $exit
281
- # fi
282
- # done
283
- # fi
284
- - name: Send mail
285
- if: always() && steps.commit.outcome == 'failure'
286
- uses: dawidd6/action-send-mail@v3
287
- with:
288
- server_address: smtp.mailgun.org
289
- server_port: 587
290
- secure: true
291
- username: ${{ secrets.MAIL_USERNAME }}
292
- password: ${{ secrets.MAIL_PASSWORD }}
293
- subject: "Github Actions: Failed update for library ${{ matrix.project }}"
294
- to: ${{ steps.commit.outputs.author }}
295
- from: monitoring@grok.datagrok.ai
296
- body: "Failed to update library ${{ matrix.project }} (${{ steps.commit.outputs.name }}) for packages ${{ steps.commit.outputs.changed }}. Update the dependency manually to version '^${{ needs.version.outputs.current_version }}'\nFailed in Workflow ${{ github.workflow }} ${{ github.run_number }}: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}"
297
- reply_to: monitoring@datagrok.ai
298
- # - name: Slack Failed Notification
299
- # if: failure()
300
- # uses: act10ns/slack@v2.1.0
301
- # with:
302
- # status: ${{ job.status }}
303
- # steps: ${{ toJson(steps) }}
304
- # config: ".github/config/slack.yml"
305
- # webhook-url: ${{ secrets.SLACK_WEBHOOK_REPORT }}
@@ -1,19 +0,0 @@
1
- name: Run tests
2
-
3
- on: [push, pull_request]
4
-
5
- jobs:
6
- test:
7
- runs-on: ubuntu-latest
8
-
9
- steps:
10
- - uses: actions/checkout@v4
11
- - uses: actions/setup-node@v4
12
- with:
13
- node-version: 20
14
-
15
- - name: Install dependencies
16
- run: npm install
17
-
18
- - name: Run tests
19
- run: npm test
package/CLAUDE.md DELETED
@@ -1,98 +0,0 @@
1
- # CLAUDE.md
2
-
3
- This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
4
-
5
- ## Project Overview
6
-
7
- **diff-grok** is a zero-dependency TypeScript library for solving initial value problems (IVPs) for ordinary differential equations (ODEs), focused on stiff equations. It implements Rosenbrock-Wanner type numerical methods and includes a declarative model scripting system.
8
-
9
- ## Build & Development Commands
10
-
11
- ```bash
12
- npm install # Install dev dependencies
13
- npm run build # Compile TypeScript (tsc)
14
- npm run lint # ESLint check: eslint "./src/**/*.ts"
15
- npm run lint-fix # Auto-fix lint issues
16
- npm test # Run Jest test suite
17
- ```
18
-
19
- Run a single test file:
20
- ```bash
21
- npx jest src/tests/correctness.test.ts
22
- ```
23
-
24
- ## Architecture
25
-
26
- ### Module Structure
27
-
28
- - **`index.ts`** — Single entry point; re-exports everything from the four modules below.
29
-
30
- - **`src/solver-tools/`** — Core numerical solvers
31
- - **Implicit methods** (for stiff ODEs): `mrt` (Modified Rosenbrock Triple), `ros3prw`, `ros34prw`
32
- - Require Jacobian computation and linear system solves
33
- - Use LU decomposition for solving W*k = b at each stage
34
- - **Automatic methods** (stiffness-detecting): `lsoda` (variable-order Nordsieck Adams/BDF with automatic switching)
35
- - Automatically switch between non-stiff (Adams) and stiff (BDF) modes
36
- - Use consecutive rejection counting (Adams→BDF) and periodic trial steps (BDF→Adams)
37
- - **Explicit methods** (for non-stiff ODEs): `rk3` (Bogacki-Shampine 3(2)), `rk4` (Runge-Kutta-Fehlberg 4(5)), `ab5` (Adams-Bashforth-Moulton 5), `ab4` (Adams-Bashforth-Moulton 4), `rkdp` (Dormand-Prince 5(4))
38
- - Only require function evaluations (no Jacobian)
39
- - Include `hMax` constraint to prevent poor interpolation
40
- - `ab5` and `ab4` are multistep predictor-corrector methods bootstrapped with RKF45
41
- - Key types: `ODEs` (problem definition), `Func` (RHS function signature), `SolverMethod`
42
- - `solver-defs.ts` — Type definitions, adaptive step constants, Jacobian/derivative computation
43
- - `lin-alg-tools.ts` — Linear algebra routines (LU decomposition, matrix ops)
44
- - `callbacks/` — Flow control during solving (iteration limits, time limits)
45
-
46
- - **`src/scripting-tools/`** — Declarative model parsing and JS code generation
47
- - `scripting-tools.ts` — Main parser: converts model DSL text → `IVP` object → JavaScript code
48
- - Model DSL uses `#name`, `#equations`, `#argument`, `#inits`, `#parameters`, `#constants`, `#expressions` blocks
49
- - Entry functions: `getIVP()` (parse model string), `getJScode()` (generate JS from IVP)
50
-
51
- - **`src/pipeline/`** — Multi-stage simulation orchestration
52
- - Three pipeline creators for different model types:
53
- - `BasicModelPipelineCreator` — Single-stage models
54
- - `CyclicModelPipelineCreator` — Loop/dosing models (PK-PD)
55
- - `UpdatesModelPipelineCreator` — Multi-stage models with state transitions
56
- - `applyPipeline()` runs the full computation pipeline
57
-
58
- - **`src/worker-tools/`** — WebWorker integration for browser parallel computation
59
- - `getIvp2WebWorker()` serializes IVP for worker transfer; `solveIvp()` runs in worker
60
-
61
- ### Data Flow
62
-
63
- 1. Define problem as `ODEs` object (programmatic) or parse model string via `getIVP()`
64
- 2. Call solver method (`mrt`/`ros3prw`/`ros34prw`/`rk3`/`rk4`/`ab5`/`ab4`/`rkdp`/`lsoda`) → returns `Float64Array[]` (argument values + solution columns)
65
- 3. For complex models: create pipeline via `getPipelineCreator()` → `applyPipeline()`
66
-
67
- ### Performance Patterns
68
-
69
- - Uses `Float64Array` throughout for memory efficiency
70
- - Pre-allocated buffers to minimize GC pressure
71
- - RHS function signature `(t, y, output) => void` writes to pre-allocated output array
72
-
73
- ## Code Style
74
-
75
- - **ESLint config**: Google style base, 2-space indent, 120 char max line length
76
- - **Curly braces**: `"multi-or-nest"` — single-statement bodies don't need braces, multi-line do
77
- - **TypeScript strict mode** enabled
78
- - Commit messages: `feat:`, `fix:`, `docs:` prefixes (conventional style)
79
-
80
- ## Testing
81
-
82
- Tests are in `src/tests/` using Jest with ts-jest:
83
- - `correctness.test.ts` — Validates solver accuracy against reference solutions (threshold: MAX_MAD = 0.1)
84
- - Tests all methods (implicit + explicit + automatic) against 6 problems with known exact solutions (11 methods total)
85
- - 3 non-stiff problems (1D, 2D, 3D) + 3 stiff problems (1D, 2D, 3D)
86
- - `performance.test.ts` — Benchmarks solver speed on stiff problems (timeout: 10,000ms)
87
- - Tests implicit and automatic methods (MRT, ROS3PRw, ROS34PRw, LSODA)
88
- - Test problems: Robertson, HIRES, VDPOL, OREGO, E5, Pollution
89
- - `pipeline.test.ts` — Pipeline integration tests (3 model types)
90
- - Method definitions in `test-defs.ts`: `methods` map (all 11 solvers), `implicitMethods` map (stiff-capable only)
91
-
92
- ## Key Types
93
-
94
- ```typescript
95
- type Func = (t: number, y: Float64Array, output: Float64Array) => void;
96
- type ODEs = { name, arg: {name, start, finish, step}, initial, func: Func, tolerance, solutionColNames };
97
- type SolverMethod = (odes: ODEs, callback?: Callback) => Float64Array[];
98
- ```
package/CONTRIBUTING.md DELETED
@@ -1,74 +0,0 @@
1
- # Contributing to diff-grok 🚀
2
-
3
- Thank you for your interest in contributing to diff-grok!
4
- We welcome bug reports, documentation improvements, new features, and help with tests or examples.
5
-
6
- ## ✅ How to contribute
7
-
8
- ### Reporting issues
9
-
10
- - Please search existing issues before creating a new one — your problem or idea may already be discussed or solved.
11
- - When reporting a bug, include as much information as possible: error messages, minimal reproducible example, environment (Node version, OS, TypeScript version), and expected vs actual behavior.
12
- - For feature requests — describe the motivation, proposed API (if relevant), and possible use-cases.
13
-
14
- ### Submitting pull requests (PR)
15
-
16
- 1. Fork the repository and create a branch:
17
- `feat/your-feature` or `fix/bug-description` or `docs/update-readme`
18
- 2. Make sure your code follows the existing style (TypeScript, ESLint, Prettier — as used in the repo).
19
- 3. Add or update tests/examples if applicable.
20
- 4. Run linter and tests before committing:
21
-
22
- ```bash
23
- npm install
24
- npm run lint
25
- npm test
26
- ```
27
-
28
- 5. Commit with a clear message. Prefer descriptive messages, e.g.:
29
-
30
- ```bash
31
- feat: add new Rosenbrock method,
32
- fix: correct edge behaviour in solver,
33
- docs: improve README example for ODE usage.
34
- ```
35
-
36
- 6. Rebase or merge main upstream if needed; make sure no conflicts remain.
37
-
38
- 7. Create a PR, describing what you’ve changed and referencing related issues (if any).
39
-
40
- ## 🧑‍💻 Code style & conventions
41
-
42
- Project uses TypeScript.
43
-
44
- Follow the existing coding conventions and folder structure.
45
-
46
- Keep changes focused and minimal — avoid mixing unrelated changes (e.g. code + formatting + docs) in one PR.
47
-
48
- Write clear, self-contained commits.
49
-
50
- ## 📚 Documentation & Examples
51
-
52
- If you fix or add public API — update README or add an example.
53
-
54
- For new features — prefer adding minimal examples or tests demonstrating usage.
55
-
56
- If you change behavior in edge cases — mention it clearly in docs/README.
57
-
58
- ## 🗣 Communication & Etiquette
59
-
60
- Use GitHub Issues and Pull Requests for all discussions.
61
-
62
- Be respectful and patient: contributors and maintainers may be in different timezones or busy.
63
-
64
- Before opening an Issue or PR — read existing content (README, issues, pull requests) to avoid duplicates.
65
-
66
- ## 🔧 CI, Tests, and Quality
67
-
68
- Ensure all existing tests pass; add new tests if adding functionality.
69
-
70
- Code should pass linting/formatting checks.
71
-
72
- If your change is substantial — consider adding a test or example illustrating it.
73
-
74
- Thank you for helping make diff-grok better! 🎉
package/eslintrc.json DELETED
@@ -1,45 +0,0 @@
1
- {
2
- "env": {
3
- "browser": true,
4
- "es2022": true
5
- },
6
- "extends": [
7
- "google"
8
- ],
9
- "parser": "@typescript-eslint/parser",
10
- "parserOptions": {
11
- "ecmaVersion": 12,
12
- "sourceType": "module"
13
- },
14
- "plugins": [
15
- "@typescript-eslint"
16
- ],
17
- "rules": {
18
- "no-unused-vars": "off",
19
- "@typescript-eslint/no-unused-vars": ["warn", { "varsIgnorePattern": "^(_|ui$|grok$|DG$)", "argsIgnorePattern": "^_"}],
20
- "indent": [
21
- "error",
22
- 2
23
- ],
24
- "max-len": [
25
- "error",
26
- 120
27
- ],
28
- "require-jsdoc": "off",
29
- "valid-jsdoc": "off",
30
- "spaced-comment": "off",
31
- "linebreak-style": "off",
32
- "curly": [
33
- "error",
34
- "multi-or-nest"
35
- ],
36
- "brace-style": [
37
- "error",
38
- "1tbs",
39
- {
40
- "allowSingleLine": true
41
- }
42
- ],
43
- "block-spacing": 2
44
- }
45
- }
package/images/E5.png DELETED
Binary file
package/images/HIRES.png DELETED
Binary file
package/images/OREGO.png DELETED
Binary file
Binary file
package/images/POLL.png DELETED
Binary file
package/images/ROBER.png DELETED
Binary file
package/images/VDP0L.png DELETED
Binary file
package/images/VDPOL.png DELETED
Binary file
Binary file
package/index.js.map DELETED
@@ -1 +0,0 @@
1
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package/index.ts DELETED
@@ -1,17 +0,0 @@
1
- export {Func, ODEs, mrt, ros3prw, ros34prw, rk4, ab5, ab4, rkdp, rk3, lsoda,
2
- CallbackAction, DEFAULT_OPTIONS, SolverOptions,
3
- getCallback, SolverMethod, Callback, IterCheckerCallback, TimeCheckerCallback} from './src/solver-tools';
4
-
5
- export {perfProbs, corrProbs, CorrProblem, refPoints, printRobertson, printHires, printOrego,
6
- printE5, printVdpol, printPollution} from './src/examples';
7
-
8
- export {DF_NAME, CONTROL_EXPR, MAX_LINE_CHART, getIVP, getScriptLines, getScriptParams, getJScode,
9
- IVP, DifEqs, Input, SCRIPTING, BRACE_OPEN, BRACE_CLOSE, BRACKET_OPEN, BRACKET_CLOSE, ANNOT_SEPAR,
10
- CONTROL_SEP, STAGE_COL_NAME, ARG_INPUT_KEYS, DEFAULT_SOLVER_SETTINGS, ModelError,
11
- getFunc4worker, Loop, Update, Output, Arg} from './src/scripting-tools';
12
-
13
- export {IVP2WebWorker, getIvp2WebWorker, solveIvp} from './src/worker-tools';
14
-
15
- export {Pipeline, Wrapper, applyPipeline, getOutputCode, getOutputNames, PipelineCreator,
16
- BasicModelPipelineCreator, getInputVector, getPipelineCreator, CyclicModelPipelineCreator,
17
- UpdatesModelPipelineCreator} from './src/pipeline';
package/jest.config.js DELETED
@@ -1,13 +0,0 @@
1
- /** @type {import('ts-jest').JestConfigWithTsJest} */
2
- module.exports = {
3
- preset: 'ts-jest',
4
- testEnvironment: 'node',
5
- moduleFileExtensions: ['ts', 'tsx', 'js', 'jsx', 'json', 'node'],
6
- roots: ['<rootDir>/src'],
7
- testMatch: ['**/__tests__/**/*.ts', '**/?(*.)+(spec|test).ts'],
8
- collectCoverageFrom: [
9
- 'src/**/*.ts',
10
- '!src/**/*.d.ts',
11
- '!src/**/*.test.ts',
12
- ],
13
- };
@@ -1 +0,0 @@
1
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@@ -1,44 +0,0 @@
1
- /** Example. Solve the following initial value problem
2
-
3
- dx / dt = x + y - t
4
- dy / dt = x * y + t
5
- x(0) = 1
6
- y(0) = -1
7
-
8
- on [0, 2] with the step 0.01.
9
- */
10
-
11
- import {ODEs, mrt} from '../../index';
12
-
13
- // Declare the problem
14
- const task: ODEs = {
15
- name: 'Example', // name of your model
16
- arg: {
17
- name: 't', // name of the argument
18
- start: 0, // initial value of the argument
19
- finish: 2, // final value of the argument
20
- step: 0.01, // solution grid step
21
- },
22
- initial: [1, -1], // initial values
23
- func: (t: number, y: Float64Array, output: Float64Array) => { // right-hand side of the system
24
- output[0] = y[0] + y[1] - t; // 1-st equation
25
- output[1] = y[0] * y[1] + t; // 2-nd equation
26
- },
27
- tolerance: 1e-7, // tolerance
28
- solutionColNames: ['x', 'y'], // names of solution functions
29
- };
30
-
31
- try {
32
- // Solve the problem
33
- const solution = mrt(task);
34
-
35
- // Output results
36
- console.log(task.arg.name, ' ', task.solutionColNames[0], ' ', task.solutionColNames[1]);
37
-
38
- const length = solution[0].length;
39
-
40
- for (let i = 0; i < length; ++i)
41
- console.log(solution[0][i], ' ', solution[1][i], ' ', solution[2][i]);
42
- } catch (err) {
43
- console.log('Solver failed: ', err instanceof Error ? err.message : 'Unknown problem!');
44
- }