diff-grok 1.1.0 → 1.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +1 -1
- package/README.MD +80 -31
- package/dist/index.d.ts +6 -0
- package/{index.js → dist/index.js} +2 -1
- package/dist/index.js.map +1 -0
- package/dist/src/examples/basic-use.d.ts +10 -0
- package/dist/src/examples/basic-use.js.map +1 -0
- package/dist/src/examples/check-methods.d.ts +1 -0
- package/{src → dist/src}/examples/check-methods.js +15 -3
- package/dist/src/examples/check-methods.js.map +1 -0
- package/dist/src/examples/corr-probs.d.ts +15 -0
- package/{src → dist/src}/examples/corr-probs.js +2 -2
- package/dist/src/examples/corr-probs.js.map +1 -0
- package/dist/src/examples/cyclic-model.d.ts +6 -0
- package/dist/src/examples/cyclic-model.js.map +1 -0
- package/dist/src/examples/e5.d.ts +15 -0
- package/dist/src/examples/e5.js.map +1 -0
- package/dist/src/examples/hires.d.ts +15 -0
- package/dist/src/examples/hires.js.map +1 -0
- package/dist/src/examples/index.d.ts +22 -0
- package/dist/src/examples/index.js.map +1 -0
- package/dist/src/examples/model-updates.d.ts +6 -0
- package/dist/src/examples/model-updates.js.map +1 -0
- package/dist/src/examples/orego.d.ts +15 -0
- package/dist/src/examples/orego.js.map +1 -0
- package/dist/src/examples/pipeline-use.d.ts +6 -0
- package/dist/src/examples/pipeline-use.js.map +1 -0
- package/dist/src/examples/pollution.d.ts +15 -0
- package/dist/src/examples/pollution.js.map +1 -0
- package/{src/examples/print-benchmark.ts → dist/src/examples/print-benchmark.d.ts} +8 -58
- package/dist/src/examples/print-benchmark.js.map +1 -0
- package/dist/src/examples/robertson.d.ts +15 -0
- package/{src → dist/src}/examples/robertson.js +2 -2
- package/dist/src/examples/robertson.js.map +1 -0
- package/dist/src/examples/scripting.d.ts +1 -0
- package/dist/src/examples/scripting.js.map +1 -0
- package/dist/src/examples/vdpol.d.ts +15 -0
- package/dist/src/examples/vdpol.js.map +1 -0
- package/dist/src/latex-export/examples/advanced-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/advanced-to-latex.js +41 -0
- package/dist/src/latex-export/examples/advanced-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/basic-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/basic-to-latex.js +17 -0
- package/dist/src/latex-export/examples/basic-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/bioreactor-to-latex-selective.d.ts +2 -0
- package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js +145 -0
- package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js.map +1 -0
- package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.d.ts +2 -0
- package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js +41 -0
- package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js.map +1 -0
- package/dist/src/latex-export/examples/energy-n-control-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/energy-n-control-to-markdown.js +58 -0
- package/dist/src/latex-export/examples/energy-n-control-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/extended-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/extended-to-markdown.js +37 -0
- package/dist/src/latex-export/examples/extended-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/fermentation-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/fermentation-to-latex.js +32 -0
- package/dist/src/latex-export/examples/fermentation-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/ga-production-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/ga-production-to-markdown.js +58 -0
- package/dist/src/latex-export/examples/ga-production-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/nimotuzumab-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/nimotuzumab-to-latex.js +53 -0
- package/dist/src/latex-export/examples/nimotuzumab-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.d.ts +2 -0
- package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js +50 -0
- package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js.map +1 -0
- package/dist/src/latex-export/examples/pk-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/pk-to-markdown.js +35 -0
- package/dist/src/latex-export/examples/pk-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/pollution-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/pollution-to-latex.js +141 -0
- package/dist/src/latex-export/examples/pollution-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/robertson-to-latex-no-meta.d.ts +2 -0
- package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js +25 -0
- package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js.map +1 -0
- package/dist/src/latex-export/generator/bracket-manager.d.ts +19 -0
- package/dist/src/latex-export/generator/bracket-manager.js +58 -0
- package/dist/src/latex-export/generator/bracket-manager.js.map +1 -0
- package/dist/src/latex-export/generator/document-builder.d.ts +13 -0
- package/dist/src/latex-export/generator/document-builder.js +433 -0
- package/dist/src/latex-export/generator/document-builder.js.map +1 -0
- package/dist/src/latex-export/generator/latex-generator.d.ts +23 -0
- package/dist/src/latex-export/generator/latex-generator.js +176 -0
- package/dist/src/latex-export/generator/latex-generator.js.map +1 -0
- package/dist/src/latex-export/index.d.ts +8 -0
- package/dist/src/latex-export/index.js +25 -0
- package/dist/src/latex-export/index.js.map +1 -0
- package/dist/src/latex-export/output/md-formatter.d.ts +16 -0
- package/dist/src/latex-export/output/md-formatter.js +27 -0
- package/dist/src/latex-export/output/md-formatter.js.map +1 -0
- package/dist/src/latex-export/output/tex-formatter.d.ts +5 -0
- package/dist/src/latex-export/output/tex-formatter.js +20 -0
- package/dist/src/latex-export/output/tex-formatter.js.map +1 -0
- package/dist/src/latex-export/parser/ast-parser.d.ts +7 -0
- package/dist/src/latex-export/parser/ast-parser.js +153 -0
- package/dist/src/latex-export/parser/ast-parser.js.map +1 -0
- package/dist/src/latex-export/parser/ivp-parser.d.ts +6 -0
- package/dist/src/latex-export/parser/ivp-parser.js +219 -0
- package/dist/src/latex-export/parser/ivp-parser.js.map +1 -0
- package/dist/src/latex-export/parser/line-joiner.d.ts +25 -0
- package/dist/src/latex-export/parser/line-joiner.js +80 -0
- package/dist/src/latex-export/parser/line-joiner.js.map +1 -0
- package/dist/src/latex-export/parser/tokenizer.d.ts +7 -0
- package/dist/src/latex-export/parser/tokenizer.js +143 -0
- package/dist/src/latex-export/parser/tokenizer.js.map +1 -0
- package/dist/src/latex-export/transformer/functions.d.ts +12 -0
- package/dist/src/latex-export/transformer/functions.js +47 -0
- package/dist/src/latex-export/transformer/functions.js.map +1 -0
- package/dist/src/latex-export/transformer/identifier.d.ts +23 -0
- package/dist/src/latex-export/transformer/identifier.js +194 -0
- package/dist/src/latex-export/transformer/identifier.js.map +1 -0
- package/dist/src/latex-export/transformer/operators.d.ts +9 -0
- package/dist/src/latex-export/transformer/operators.js +41 -0
- package/dist/src/latex-export/transformer/operators.js.map +1 -0
- package/dist/src/latex-export/types.d.ts +122 -0
- package/dist/src/latex-export/types.js +10 -0
- package/dist/src/latex-export/types.js.map +1 -0
- package/{src/pipeline/basic-pipeline-creator.ts → dist/src/pipeline/basic-pipeline-creator.d.ts} +11 -28
- package/dist/src/pipeline/basic-pipeline-creator.js.map +1 -0
- package/dist/src/pipeline/constants.d.ts +14 -0
- package/dist/src/pipeline/constants.js.map +1 -0
- package/dist/src/pipeline/index.d.ts +7 -0
- package/dist/src/pipeline/index.js.map +1 -0
- package/dist/src/pipeline/input.d.ts +3 -0
- package/dist/src/pipeline/input.js.map +1 -0
- package/dist/src/pipeline/loops-pipeline-creator.d.ts +124 -0
- package/dist/src/pipeline/loops-pipeline-creator.js.map +1 -0
- package/dist/src/pipeline/output.d.ts +10 -0
- package/{src → dist/src}/pipeline/output.js +1 -1
- package/dist/src/pipeline/output.js.map +1 -0
- package/dist/src/pipeline/pipeline-creator.d.ts +12 -0
- package/{src → dist/src}/pipeline/pipeline-creator.js +2 -0
- package/dist/src/pipeline/pipeline-creator.js.map +1 -0
- package/{src/pipeline/pipeline.ts → dist/src/pipeline/pipeline.d.ts} +10 -97
- package/dist/src/pipeline/pipeline.js.map +1 -0
- package/{src/pipeline/updates-pipeline-creator.ts → dist/src/pipeline/updates-pipeline-creator.d.ts} +15 -131
- package/dist/src/pipeline/updates-pipeline-creator.js.map +1 -0
- package/dist/src/scripting-tools/constants.d.ts +59 -0
- package/dist/src/scripting-tools/constants.js.map +1 -0
- package/dist/src/scripting-tools/index.d.ts +3 -0
- package/dist/src/scripting-tools/index.js.map +1 -0
- package/dist/src/scripting-tools/model-error.d.ts +10 -0
- package/{src → dist/src}/scripting-tools/model-error.js +2 -1
- package/dist/src/scripting-tools/model-error.js.map +1 -0
- package/dist/src/scripting-tools/scripting-tools.d.ts +277 -0
- package/{src → dist/src}/scripting-tools/scripting-tools.js +2 -4
- package/dist/src/scripting-tools/scripting-tools.js.map +1 -0
- package/dist/src/solver-tools/ab4-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ab4-method.js +3 -3
- package/dist/src/solver-tools/ab4-method.js.map +1 -0
- package/dist/src/solver-tools/ab5-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ab5-method.js +3 -3
- package/dist/src/solver-tools/ab5-method.js.map +1 -0
- package/dist/src/solver-tools/callbacks/callback-base.d.ts +8 -0
- package/dist/src/solver-tools/callbacks/callback-base.js.map +1 -0
- package/dist/src/solver-tools/callbacks/callback-tools.d.ts +6 -0
- package/dist/src/solver-tools/callbacks/callback-tools.js.map +1 -0
- package/dist/src/solver-tools/callbacks/iter-checker-callback.d.ts +12 -0
- package/{src → dist/src}/solver-tools/callbacks/iter-checker-callback.js +2 -0
- package/dist/src/solver-tools/callbacks/iter-checker-callback.js.map +1 -0
- package/dist/src/solver-tools/callbacks/time-checker-callback.d.ts +12 -0
- package/{src → dist/src}/solver-tools/callbacks/time-checker-callback.js +2 -2
- package/dist/src/solver-tools/callbacks/time-checker-callback.js.map +1 -0
- package/dist/src/solver-tools/cvode/common.d.ts +395 -0
- package/dist/src/solver-tools/cvode/common.js +483 -0
- package/dist/src/solver-tools/cvode/common.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode.d.ts +23 -0
- package/dist/src/solver-tools/cvode/cvode.js +1062 -0
- package/dist/src/solver-tools/cvode/cvode.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_adams.d.ts +22 -0
- package/dist/src/solver-tools/cvode/cvode_adams.js +124 -0
- package/dist/src/solver-tools/cvode/cvode_adams.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_bdf.d.ts +37 -0
- package/dist/src/solver-tools/cvode/cvode_bdf.js +153 -0
- package/dist/src/solver-tools/cvode/cvode_bdf.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_class.d.ts +116 -0
- package/dist/src/solver-tools/cvode/cvode_class.js +163 -0
- package/dist/src/solver-tools/cvode/cvode_class.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_hin.d.ts +24 -0
- package/dist/src/solver-tools/cvode/cvode_hin.js +119 -0
- package/dist/src/solver-tools/cvode/cvode_hin.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_io.d.ts +98 -0
- package/dist/src/solver-tools/cvode/cvode_io.js +202 -0
- package/dist/src/solver-tools/cvode/cvode_io.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_ls.d.ts +23 -0
- package/dist/src/solver-tools/cvode/cvode_ls.js +210 -0
- package/dist/src/solver-tools/cvode/cvode_ls.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_nls.d.ts +25 -0
- package/dist/src/solver-tools/cvode/cvode_nls.js +220 -0
- package/dist/src/solver-tools/cvode/cvode_nls.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_root.d.ts +64 -0
- package/dist/src/solver-tools/cvode/cvode_root.js +415 -0
- package/dist/src/solver-tools/cvode/cvode_root.js.map +1 -0
- package/dist/src/solver-tools/cvode/dense_linalg.d.ts +50 -0
- package/dist/src/solver-tools/cvode/dense_linalg.js +131 -0
- package/dist/src/solver-tools/cvode/dense_linalg.js.map +1 -0
- package/dist/src/solver-tools/cvode/index.d.ts +24 -0
- package/dist/src/solver-tools/cvode/index.js +26 -0
- package/dist/src/solver-tools/cvode/index.js.map +1 -0
- package/dist/src/solver-tools/cvode-method.d.ts +47 -0
- package/dist/src/solver-tools/cvode-method.js +114 -0
- package/dist/src/solver-tools/cvode-method.js.map +1 -0
- package/dist/src/solver-tools/index.d.ts +16 -0
- package/{src → dist/src}/solver-tools/index.js +1 -0
- package/dist/src/solver-tools/index.js.map +1 -0
- package/dist/src/solver-tools/lin-alg-tools.d.ts +6 -0
- package/dist/src/solver-tools/lin-alg-tools.js.map +1 -0
- package/dist/src/solver-tools/lsoda/blas.d.ts +59 -0
- package/{src → dist/src}/solver-tools/lsoda/blas.js +11 -0
- package/dist/src/solver-tools/lsoda/blas.js.map +1 -0
- package/dist/src/solver-tools/lsoda/cfode.d.ts +18 -0
- package/{src → dist/src}/solver-tools/lsoda/cfode.js +11 -0
- package/dist/src/solver-tools/lsoda/cfode.js.map +1 -0
- package/dist/src/solver-tools/lsoda/common.d.ts +85 -0
- package/dist/src/solver-tools/lsoda/common.js +96 -0
- package/dist/src/solver-tools/lsoda/common.js.map +1 -0
- package/dist/src/solver-tools/lsoda/corfailure.d.ts +18 -0
- package/{src → dist/src}/solver-tools/lsoda/corfailure.js +11 -0
- package/dist/src/solver-tools/lsoda/corfailure.js.map +1 -0
- package/dist/src/solver-tools/lsoda/correction.d.ts +23 -0
- package/{src → dist/src}/solver-tools/lsoda/correction.js +11 -0
- package/dist/src/solver-tools/lsoda/correction.js.map +1 -0
- package/dist/src/solver-tools/lsoda/dense.d.ts +47 -0
- package/{src → dist/src}/solver-tools/lsoda/dense.js +13 -0
- package/dist/src/solver-tools/lsoda/dense.js.map +1 -0
- package/dist/src/solver-tools/lsoda/index.d.ts +16 -0
- package/dist/src/solver-tools/lsoda/index.js +15 -0
- package/dist/src/solver-tools/lsoda/index.js.map +1 -0
- package/dist/src/solver-tools/lsoda/intdy.d.ts +19 -0
- package/{src → dist/src}/solver-tools/lsoda/intdy.js +11 -0
- package/dist/src/solver-tools/lsoda/intdy.js.map +1 -0
- package/dist/src/solver-tools/lsoda/lsoda.d.ts +66 -0
- package/{src → dist/src}/solver-tools/lsoda/lsoda.js +24 -5
- package/dist/src/solver-tools/lsoda/lsoda.js.map +1 -0
- package/dist/src/solver-tools/lsoda/methodswitch.d.ts +21 -0
- package/{src → dist/src}/solver-tools/lsoda/methodswitch.js +11 -0
- package/dist/src/solver-tools/lsoda/methodswitch.js.map +1 -0
- package/dist/src/solver-tools/lsoda/orderswitch.d.ts +21 -0
- package/{src → dist/src}/solver-tools/lsoda/orderswitch.js +11 -0
- package/dist/src/solver-tools/lsoda/orderswitch.js.map +1 -0
- package/dist/src/solver-tools/lsoda/prja.d.ts +18 -0
- package/{src → dist/src}/solver-tools/lsoda/prja.js +11 -0
- package/dist/src/solver-tools/lsoda/prja.js.map +1 -0
- package/dist/src/solver-tools/lsoda/scaleh.d.ts +16 -0
- package/{src → dist/src}/solver-tools/lsoda/scaleh.js +11 -0
- package/dist/src/solver-tools/lsoda/scaleh.js.map +1 -0
- package/dist/src/solver-tools/lsoda/solsy.d.ts +17 -0
- package/dist/src/solver-tools/lsoda/solsy.js +25 -0
- package/dist/src/solver-tools/lsoda/solsy.js.map +1 -0
- package/dist/src/solver-tools/lsoda/stoda.d.ts +19 -0
- package/{src → dist/src}/solver-tools/lsoda/stoda.js +11 -0
- package/dist/src/solver-tools/lsoda/stoda.js.map +1 -0
- package/dist/src/solver-tools/lsoda-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/lsoda-method.js +23 -9
- package/dist/src/solver-tools/lsoda-method.js.map +1 -0
- package/dist/src/solver-tools/mrt-method.d.ts +47 -0
- package/{src → dist/src}/solver-tools/mrt-method.js +2 -2
- package/dist/src/solver-tools/mrt-method.js.map +1 -0
- package/dist/src/solver-tools/rk3-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/rk3-method.js +2 -2
- package/dist/src/solver-tools/rk3-method.js.map +1 -0
- package/dist/src/solver-tools/rk4-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/rk4-method.js +2 -2
- package/dist/src/solver-tools/rk4-method.js.map +1 -0
- package/dist/src/solver-tools/rkdp-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/rkdp-method.js +2 -2
- package/dist/src/solver-tools/rkdp-method.js.map +1 -0
- package/dist/src/solver-tools/ros34prw-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ros34prw-method.js +2 -2
- package/dist/src/solver-tools/ros34prw-method.js.map +1 -0
- package/dist/src/solver-tools/ros3prw-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ros3prw-method.js +2 -2
- package/dist/src/solver-tools/ros3prw-method.js.map +1 -0
- package/{src/solver-tools/solver-defs.ts → dist/src/solver-tools/solver-defs.d.ts} +45 -84
- package/{src → dist/src}/solver-tools/solver-defs.js +1 -0
- package/dist/src/solver-tools/solver-defs.js.map +1 -0
- package/dist/src/worker-tools/index.d.ts +2 -0
- package/dist/src/worker-tools/index.js.map +1 -0
- package/{src/worker-tools/scripting.ts → dist/src/worker-tools/scripting.d.ts} +9 -91
- package/dist/src/worker-tools/scripting.js.map +1 -0
- package/dist/src/worker-tools/solving.d.ts +7 -0
- package/{src → dist/src}/worker-tools/solving.js +3 -1
- package/dist/src/worker-tools/solving.js.map +1 -0
- package/package.json +13 -12
- package/.claude/settings.local.json +0 -11
- package/.eslintrc.json +0 -45
- package/.github/ISSUE_TEMPLATE/bug_report.md +0 -29
- package/.github/ISSUE_TEMPLATE/feature_request.md +0 -20
- package/.github/PULL_REQUEST_TEMPLATE.md +0 -22
- package/.github/scripts/bump-js-api-version.sh +0 -106
- package/.github/scripts/check-output.sh +0 -20
- package/.github/scripts/iac-cfn-deploy.sh +0 -90
- package/.github/scripts/slack_api_request.sh +0 -65
- package/.github/scripts/test_package.sh +0 -270
- package/.github/workflows/deploy-docs.yml +0 -15
- package/.github/workflows/libraries.yaml +0 -305
- package/.github/workflows/test.yaml +0 -19
- package/CLAUDE.md +0 -98
- package/CONTRIBUTING.md +0 -74
- package/eslintrc.json +0 -45
- package/images/E5.png +0 -0
- package/images/HIRES.png +0 -0
- package/images/OREGO.png +0 -0
- package/images/POLL-full.png +0 -0
- package/images/POLL.png +0 -0
- package/images/ROBER.png +0 -0
- package/images/VDP0L.png +0 -0
- package/images/VDPOL.png +0 -0
- package/images/acid-prod.gif +0 -0
- package/index.js.map +0 -1
- package/index.ts +0 -17
- package/jest.config.js +0 -13
- package/src/examples/basic-use.js.map +0 -1
- package/src/examples/basic-use.ts +0 -44
- package/src/examples/bioreactor.js +0 -125
- package/src/examples/bioreactor.js.map +0 -1
- package/src/examples/bioreactor.ts +0 -132
- package/src/examples/check-methods.js.map +0 -1
- package/src/examples/check-methods.ts +0 -81
- package/src/examples/corr-probs.js.map +0 -1
- package/src/examples/corr-probs.ts +0 -155
- package/src/examples/cyclic-model.js.map +0 -1
- package/src/examples/cyclic-model.ts +0 -112
- package/src/examples/e5.js.map +0 -1
- package/src/examples/e5.ts +0 -36
- package/src/examples/hires.js.map +0 -1
- package/src/examples/hires.ts +0 -40
- package/src/examples/index.js.map +0 -1
- package/src/examples/index.ts +0 -34
- package/src/examples/model-updates.js.map +0 -1
- package/src/examples/model-updates.ts +0 -122
- package/src/examples/orego.js.map +0 -1
- package/src/examples/orego.ts +0 -25
- package/src/examples/pipeline-use.js.map +0 -1
- package/src/examples/pipeline-use.ts +0 -98
- package/src/examples/pollution.js.map +0 -1
- package/src/examples/pollution.ts +0 -133
- package/src/examples/print-benchmark.js.map +0 -1
- package/src/examples/robertson.js.map +0 -1
- package/src/examples/robertson.ts +0 -19
- package/src/examples/scripting.js.map +0 -1
- package/src/examples/scripting.ts +0 -35
- package/src/examples/vdpol.js.map +0 -1
- package/src/examples/vdpol.ts +0 -17
- package/src/pipeline/basic-pipeline-creator.js.map +0 -1
- package/src/pipeline/constants.js.map +0 -1
- package/src/pipeline/constants.ts +0 -21
- package/src/pipeline/index.js.map +0 -1
- package/src/pipeline/index.ts +0 -7
- package/src/pipeline/input.js.map +0 -1
- package/src/pipeline/input.ts +0 -55
- package/src/pipeline/loops-pipeline-creator.js.map +0 -1
- package/src/pipeline/loops-pipeline-creator.ts +0 -252
- package/src/pipeline/output.js.map +0 -1
- package/src/pipeline/output.ts +0 -201
- package/src/pipeline/pipeline-creator.js.map +0 -1
- package/src/pipeline/pipeline-creator.ts +0 -20
- package/src/pipeline/pipeline.js.map +0 -1
- package/src/pipeline/updates-pipeline-creator.js.map +0 -1
- package/src/scripting-tools/constants.js.map +0 -1
- package/src/scripting-tools/constants.ts +0 -69
- package/src/scripting-tools/index.js.map +0 -1
- package/src/scripting-tools/index.ts +0 -8
- package/src/scripting-tools/model-error.js.map +0 -1
- package/src/scripting-tools/model-error.ts +0 -21
- package/src/scripting-tools/scripting-tools.js.map +0 -1
- package/src/scripting-tools/scripting-tools.ts +0 -1582
- package/src/solver-tools/ab4-method.js.map +0 -1
- package/src/solver-tools/ab4-method.ts +0 -395
- package/src/solver-tools/ab5-method.js.map +0 -1
- package/src/solver-tools/ab5-method.ts +0 -397
- package/src/solver-tools/callbacks/callback-base.js.map +0 -1
- package/src/solver-tools/callbacks/callback-base.ts +0 -12
- package/src/solver-tools/callbacks/callback-tools.js.map +0 -1
- package/src/solver-tools/callbacks/callback-tools.ts +0 -22
- package/src/solver-tools/callbacks/iter-checker-callback.js.map +0 -1
- package/src/solver-tools/callbacks/iter-checker-callback.ts +0 -25
- package/src/solver-tools/callbacks/time-checker-callback.js.map +0 -1
- package/src/solver-tools/callbacks/time-checker-callback.ts +0 -23
- package/src/solver-tools/index.js.map +0 -1
- package/src/solver-tools/index.ts +0 -15
- package/src/solver-tools/lin-alg-tools.js.map +0 -1
- package/src/solver-tools/lin-alg-tools.ts +0 -75
- package/src/solver-tools/lsoda/blas.js.map +0 -1
- package/src/solver-tools/lsoda/blas.ts +0 -267
- package/src/solver-tools/lsoda/cfode.js.map +0 -1
- package/src/solver-tools/lsoda/cfode.ts +0 -83
- package/src/solver-tools/lsoda/common.js +0 -94
- package/src/solver-tools/lsoda/common.js.map +0 -1
- package/src/solver-tools/lsoda/common.ts +0 -135
- package/src/solver-tools/lsoda/corfailure.js.map +0 -1
- package/src/solver-tools/lsoda/corfailure.ts +0 -30
- package/src/solver-tools/lsoda/correction.js.map +0 -1
- package/src/solver-tools/lsoda/correction.ts +0 -119
- package/src/solver-tools/lsoda/dense.js.map +0 -1
- package/src/solver-tools/lsoda/dense.ts +0 -129
- package/src/solver-tools/lsoda/index.js +0 -4
- package/src/solver-tools/lsoda/index.js.map +0 -1
- package/src/solver-tools/lsoda/index.ts +0 -5
- package/src/solver-tools/lsoda/intdy.js.map +0 -1
- package/src/solver-tools/lsoda/intdy.ts +0 -50
- package/src/solver-tools/lsoda/lsoda.js.map +0 -1
- package/src/solver-tools/lsoda/lsoda.ts +0 -632
- package/src/solver-tools/lsoda/methodswitch.js.map +0 -1
- package/src/solver-tools/lsoda/methodswitch.ts +0 -107
- package/src/solver-tools/lsoda/orderswitch.js.map +0 -1
- package/src/solver-tools/lsoda/orderswitch.ts +0 -95
- package/src/solver-tools/lsoda/prja.js.map +0 -1
- package/src/solver-tools/lsoda/prja.ts +0 -49
- package/src/solver-tools/lsoda/scaleh.js.map +0 -1
- package/src/solver-tools/lsoda/scaleh.ts +0 -33
- package/src/solver-tools/lsoda/solsy.js +0 -14
- package/src/solver-tools/lsoda/solsy.js.map +0 -1
- package/src/solver-tools/lsoda/solsy.ts +0 -18
- package/src/solver-tools/lsoda/stoda.js.map +0 -1
- package/src/solver-tools/lsoda/stoda.ts +0 -286
- package/src/solver-tools/lsoda-method.js.map +0 -1
- package/src/solver-tools/lsoda-method.ts +0 -136
- package/src/solver-tools/mrt-method.js.map +0 -1
- package/src/solver-tools/mrt-method.ts +0 -398
- package/src/solver-tools/rk3-method.js.map +0 -1
- package/src/solver-tools/rk3-method.ts +0 -257
- package/src/solver-tools/rk4-method.js.map +0 -1
- package/src/solver-tools/rk4-method.ts +0 -286
- package/src/solver-tools/rkdp-method.js.map +0 -1
- package/src/solver-tools/rkdp-method.ts +0 -300
- package/src/solver-tools/ros34prw-method.js.map +0 -1
- package/src/solver-tools/ros34prw-method.ts +0 -373
- package/src/solver-tools/ros3prw-method.js.map +0 -1
- package/src/solver-tools/ros3prw-method.ts +0 -342
- package/src/solver-tools/solver-defs.js.map +0 -1
- package/src/tests/correctness.test.js +0 -15
- package/src/tests/correctness.test.js.map +0 -1
- package/src/tests/correctness.test.ts +0 -16
- package/src/tests/lsoda-lib-correctness.test.js +0 -223
- package/src/tests/lsoda-lib-correctness.test.js.map +0 -1
- package/src/tests/lsoda-lib-correctness.test.ts +0 -283
- package/src/tests/lsoda-lib-performance.test.js +0 -95
- package/src/tests/lsoda-lib-performance.test.js.map +0 -1
- package/src/tests/lsoda-lib-performance.test.ts +0 -126
- package/src/tests/performance.test.js +0 -16
- package/src/tests/performance.test.js.map +0 -1
- package/src/tests/performance.test.ts +0 -17
- package/src/tests/pipeline.test.js +0 -10
- package/src/tests/pipeline.test.js.map +0 -1
- package/src/tests/pipeline.test.ts +0 -11
- package/src/tests/test-defs.js +0 -207
- package/src/tests/test-defs.js.map +0 -1
- package/src/tests/test-defs.ts +0 -225
- package/src/tests/test-utils.js +0 -28
- package/src/tests/test-utils.js.map +0 -1
- package/src/tests/test-utils.ts +0 -37
- package/src/worker-tools/index.js.map +0 -1
- package/src/worker-tools/index.ts +0 -2
- package/src/worker-tools/scripting.js.map +0 -1
- package/src/worker-tools/solving.js.map +0 -1
- package/src/worker-tools/solving.ts +0 -83
- package/tsconfig.json +0 -71
- package/typedoc.json +0 -8
- /package/{src → dist/src}/examples/basic-use.js +0 -0
- /package/{src → dist/src}/examples/cyclic-model.js +0 -0
- /package/{src → dist/src}/examples/e5.js +0 -0
- /package/{src → dist/src}/examples/hires.js +0 -0
- /package/{src → dist/src}/examples/index.js +0 -0
- /package/{src → dist/src}/examples/model-updates.js +0 -0
- /package/{src → dist/src}/examples/orego.js +0 -0
- /package/{src → dist/src}/examples/pipeline-use.js +0 -0
- /package/{src → dist/src}/examples/pollution.js +0 -0
- /package/{src → dist/src}/examples/print-benchmark.js +0 -0
- /package/{src → dist/src}/examples/scripting.js +0 -0
- /package/{src → dist/src}/examples/vdpol.js +0 -0
- /package/{src → dist/src}/pipeline/basic-pipeline-creator.js +0 -0
- /package/{src → dist/src}/pipeline/constants.js +0 -0
- /package/{src → dist/src}/pipeline/index.js +0 -0
- /package/{src → dist/src}/pipeline/input.js +0 -0
- /package/{src → dist/src}/pipeline/loops-pipeline-creator.js +0 -0
- /package/{src → dist/src}/pipeline/pipeline.js +0 -0
- /package/{src → dist/src}/pipeline/updates-pipeline-creator.js +0 -0
- /package/{src → dist/src}/scripting-tools/constants.js +0 -0
- /package/{src → dist/src}/scripting-tools/index.js +0 -0
- /package/{src → dist/src}/solver-tools/callbacks/callback-base.js +0 -0
- /package/{src → dist/src}/solver-tools/callbacks/callback-tools.js +0 -0
- /package/{src → dist/src}/solver-tools/lin-alg-tools.js +0 -0
- /package/{src → dist/src}/worker-tools/index.js +0 -0
- /package/{src → dist/src}/worker-tools/scripting.js +0 -0
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# fi
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# done
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- name: Send mail
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password: ${{ secrets.MAIL_PASSWORD }}
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subject: "Github Actions: Failed update for library ${{ matrix.project }}"
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to: ${{ steps.commit.outputs.author }}
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from: monitoring@grok.datagrok.ai
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|
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body: "Failed to update library ${{ matrix.project }} (${{ steps.commit.outputs.name }}) for packages ${{ steps.commit.outputs.changed }}. Update the dependency manually to version '^${{ needs.version.outputs.current_version }}'\nFailed in Workflow ${{ github.workflow }} ${{ github.run_number }}: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}"
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reply_to: monitoring@datagrok.ai
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# - name: Slack Failed Notification
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# if: failure()
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# uses: act10ns/slack@v2.1.0
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# with:
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# status: ${{ job.status }}
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# steps: ${{ toJson(steps) }}
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# webhook-url: ${{ secrets.SLACK_WEBHOOK_REPORT }}
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name: Run tests
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on: [push, pull_request]
|
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|
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runs-on: ubuntu-latest
|
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steps:
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with:
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node-version: 20
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- name: Install dependencies
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|
package/CLAUDE.md
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# CLAUDE.md
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-
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This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
|
|
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-
|
|
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|
-
## Project Overview
|
|
6
|
-
|
|
7
|
-
**diff-grok** is a zero-dependency TypeScript library for solving initial value problems (IVPs) for ordinary differential equations (ODEs), focused on stiff equations. It implements Rosenbrock-Wanner type numerical methods and includes a declarative model scripting system.
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|
8
|
-
|
|
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|
-
## Build & Development Commands
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-
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```bash
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|
-
npm install # Install dev dependencies
|
|
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|
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npm run build # Compile TypeScript (tsc)
|
|
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|
-
npm run lint # ESLint check: eslint "./src/**/*.ts"
|
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|
-
npm run lint-fix # Auto-fix lint issues
|
|
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-
npm test # Run Jest test suite
|
|
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|
-
```
|
|
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|
-
|
|
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|
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Run a single test file:
|
|
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|
-
```bash
|
|
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|
-
npx jest src/tests/correctness.test.ts
|
|
22
|
-
```
|
|
23
|
-
|
|
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|
-
## Architecture
|
|
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|
-
|
|
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|
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### Module Structure
|
|
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|
-
|
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|
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- **`index.ts`** — Single entry point; re-exports everything from the four modules below.
|
|
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|
-
|
|
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|
-
- **`src/solver-tools/`** — Core numerical solvers
|
|
31
|
-
- **Implicit methods** (for stiff ODEs): `mrt` (Modified Rosenbrock Triple), `ros3prw`, `ros34prw`
|
|
32
|
-
- Require Jacobian computation and linear system solves
|
|
33
|
-
- Use LU decomposition for solving W*k = b at each stage
|
|
34
|
-
- **Automatic methods** (stiffness-detecting): `lsoda` (variable-order Nordsieck Adams/BDF with automatic switching)
|
|
35
|
-
- Automatically switch between non-stiff (Adams) and stiff (BDF) modes
|
|
36
|
-
- Use consecutive rejection counting (Adams→BDF) and periodic trial steps (BDF→Adams)
|
|
37
|
-
- **Explicit methods** (for non-stiff ODEs): `rk3` (Bogacki-Shampine 3(2)), `rk4` (Runge-Kutta-Fehlberg 4(5)), `ab5` (Adams-Bashforth-Moulton 5), `ab4` (Adams-Bashforth-Moulton 4), `rkdp` (Dormand-Prince 5(4))
|
|
38
|
-
- Only require function evaluations (no Jacobian)
|
|
39
|
-
- Include `hMax` constraint to prevent poor interpolation
|
|
40
|
-
- `ab5` and `ab4` are multistep predictor-corrector methods bootstrapped with RKF45
|
|
41
|
-
- Key types: `ODEs` (problem definition), `Func` (RHS function signature), `SolverMethod`
|
|
42
|
-
- `solver-defs.ts` — Type definitions, adaptive step constants, Jacobian/derivative computation
|
|
43
|
-
- `lin-alg-tools.ts` — Linear algebra routines (LU decomposition, matrix ops)
|
|
44
|
-
- `callbacks/` — Flow control during solving (iteration limits, time limits)
|
|
45
|
-
|
|
46
|
-
- **`src/scripting-tools/`** — Declarative model parsing and JS code generation
|
|
47
|
-
- `scripting-tools.ts` — Main parser: converts model DSL text → `IVP` object → JavaScript code
|
|
48
|
-
- Model DSL uses `#name`, `#equations`, `#argument`, `#inits`, `#parameters`, `#constants`, `#expressions` blocks
|
|
49
|
-
- Entry functions: `getIVP()` (parse model string), `getJScode()` (generate JS from IVP)
|
|
50
|
-
|
|
51
|
-
- **`src/pipeline/`** — Multi-stage simulation orchestration
|
|
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|
-
- Three pipeline creators for different model types:
|
|
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|
-
- `BasicModelPipelineCreator` — Single-stage models
|
|
54
|
-
- `CyclicModelPipelineCreator` — Loop/dosing models (PK-PD)
|
|
55
|
-
- `UpdatesModelPipelineCreator` — Multi-stage models with state transitions
|
|
56
|
-
- `applyPipeline()` runs the full computation pipeline
|
|
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|
-
|
|
58
|
-
- **`src/worker-tools/`** — WebWorker integration for browser parallel computation
|
|
59
|
-
- `getIvp2WebWorker()` serializes IVP for worker transfer; `solveIvp()` runs in worker
|
|
60
|
-
|
|
61
|
-
### Data Flow
|
|
62
|
-
|
|
63
|
-
1. Define problem as `ODEs` object (programmatic) or parse model string via `getIVP()`
|
|
64
|
-
2. Call solver method (`mrt`/`ros3prw`/`ros34prw`/`rk3`/`rk4`/`ab5`/`ab4`/`rkdp`/`lsoda`) → returns `Float64Array[]` (argument values + solution columns)
|
|
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|
-
3. For complex models: create pipeline via `getPipelineCreator()` → `applyPipeline()`
|
|
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|
-
|
|
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|
-
### Performance Patterns
|
|
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|
-
|
|
69
|
-
- Uses `Float64Array` throughout for memory efficiency
|
|
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|
-
- Pre-allocated buffers to minimize GC pressure
|
|
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|
-
- RHS function signature `(t, y, output) => void` writes to pre-allocated output array
|
|
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|
-
|
|
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|
-
## Code Style
|
|
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|
-
|
|
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|
-
- **ESLint config**: Google style base, 2-space indent, 120 char max line length
|
|
76
|
-
- **Curly braces**: `"multi-or-nest"` — single-statement bodies don't need braces, multi-line do
|
|
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|
-
- **TypeScript strict mode** enabled
|
|
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|
-
- Commit messages: `feat:`, `fix:`, `docs:` prefixes (conventional style)
|
|
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|
-
|
|
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|
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## Testing
|
|
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|
-
|
|
82
|
-
Tests are in `src/tests/` using Jest with ts-jest:
|
|
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|
-
- `correctness.test.ts` — Validates solver accuracy against reference solutions (threshold: MAX_MAD = 0.1)
|
|
84
|
-
- Tests all methods (implicit + explicit + automatic) against 6 problems with known exact solutions (11 methods total)
|
|
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|
-
- 3 non-stiff problems (1D, 2D, 3D) + 3 stiff problems (1D, 2D, 3D)
|
|
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|
-
- `performance.test.ts` — Benchmarks solver speed on stiff problems (timeout: 10,000ms)
|
|
87
|
-
- Tests implicit and automatic methods (MRT, ROS3PRw, ROS34PRw, LSODA)
|
|
88
|
-
- Test problems: Robertson, HIRES, VDPOL, OREGO, E5, Pollution
|
|
89
|
-
- `pipeline.test.ts` — Pipeline integration tests (3 model types)
|
|
90
|
-
- Method definitions in `test-defs.ts`: `methods` map (all 11 solvers), `implicitMethods` map (stiff-capable only)
|
|
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|
-
|
|
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|
-
## Key Types
|
|
93
|
-
|
|
94
|
-
```typescript
|
|
95
|
-
type Func = (t: number, y: Float64Array, output: Float64Array) => void;
|
|
96
|
-
type ODEs = { name, arg: {name, start, finish, step}, initial, func: Func, tolerance, solutionColNames };
|
|
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|
-
type SolverMethod = (odes: ODEs, callback?: Callback) => Float64Array[];
|
|
98
|
-
```
|
package/CONTRIBUTING.md
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|
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|
|
1
|
-
# Contributing to diff-grok 🚀
|
|
2
|
-
|
|
3
|
-
Thank you for your interest in contributing to diff-grok!
|
|
4
|
-
We welcome bug reports, documentation improvements, new features, and help with tests or examples.
|
|
5
|
-
|
|
6
|
-
## ✅ How to contribute
|
|
7
|
-
|
|
8
|
-
### Reporting issues
|
|
9
|
-
|
|
10
|
-
- Please search existing issues before creating a new one — your problem or idea may already be discussed or solved.
|
|
11
|
-
- When reporting a bug, include as much information as possible: error messages, minimal reproducible example, environment (Node version, OS, TypeScript version), and expected vs actual behavior.
|
|
12
|
-
- For feature requests — describe the motivation, proposed API (if relevant), and possible use-cases.
|
|
13
|
-
|
|
14
|
-
### Submitting pull requests (PR)
|
|
15
|
-
|
|
16
|
-
1. Fork the repository and create a branch:
|
|
17
|
-
`feat/your-feature` or `fix/bug-description` or `docs/update-readme`
|
|
18
|
-
2. Make sure your code follows the existing style (TypeScript, ESLint, Prettier — as used in the repo).
|
|
19
|
-
3. Add or update tests/examples if applicable.
|
|
20
|
-
4. Run linter and tests before committing:
|
|
21
|
-
|
|
22
|
-
```bash
|
|
23
|
-
npm install
|
|
24
|
-
npm run lint
|
|
25
|
-
npm test
|
|
26
|
-
```
|
|
27
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```bash
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feat: add new Rosenbrock method,
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fix: correct edge behaviour in solver,
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## 🧑💻 Code style & conventions
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