diff-grok 1.1.0 → 1.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +1 -1
- package/README.MD +80 -31
- package/dist/index.d.ts +6 -0
- package/{index.js → dist/index.js} +2 -1
- package/dist/index.js.map +1 -0
- package/dist/src/examples/basic-use.d.ts +10 -0
- package/dist/src/examples/basic-use.js.map +1 -0
- package/dist/src/examples/check-methods.d.ts +1 -0
- package/{src → dist/src}/examples/check-methods.js +15 -3
- package/dist/src/examples/check-methods.js.map +1 -0
- package/dist/src/examples/corr-probs.d.ts +15 -0
- package/{src → dist/src}/examples/corr-probs.js +2 -2
- package/dist/src/examples/corr-probs.js.map +1 -0
- package/dist/src/examples/cyclic-model.d.ts +6 -0
- package/dist/src/examples/cyclic-model.js.map +1 -0
- package/dist/src/examples/e5.d.ts +15 -0
- package/dist/src/examples/e5.js.map +1 -0
- package/dist/src/examples/hires.d.ts +15 -0
- package/dist/src/examples/hires.js.map +1 -0
- package/dist/src/examples/index.d.ts +22 -0
- package/dist/src/examples/index.js.map +1 -0
- package/dist/src/examples/model-updates.d.ts +6 -0
- package/dist/src/examples/model-updates.js.map +1 -0
- package/dist/src/examples/orego.d.ts +15 -0
- package/dist/src/examples/orego.js.map +1 -0
- package/dist/src/examples/pipeline-use.d.ts +6 -0
- package/dist/src/examples/pipeline-use.js.map +1 -0
- package/dist/src/examples/pollution.d.ts +15 -0
- package/dist/src/examples/pollution.js.map +1 -0
- package/{src/examples/print-benchmark.ts → dist/src/examples/print-benchmark.d.ts} +8 -58
- package/dist/src/examples/print-benchmark.js.map +1 -0
- package/dist/src/examples/robertson.d.ts +15 -0
- package/{src → dist/src}/examples/robertson.js +2 -2
- package/dist/src/examples/robertson.js.map +1 -0
- package/dist/src/examples/scripting.d.ts +1 -0
- package/dist/src/examples/scripting.js.map +1 -0
- package/dist/src/examples/vdpol.d.ts +15 -0
- package/dist/src/examples/vdpol.js.map +1 -0
- package/dist/src/latex-export/examples/advanced-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/advanced-to-latex.js +41 -0
- package/dist/src/latex-export/examples/advanced-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/basic-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/basic-to-latex.js +17 -0
- package/dist/src/latex-export/examples/basic-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/bioreactor-to-latex-selective.d.ts +2 -0
- package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js +145 -0
- package/dist/src/latex-export/examples/bioreactor-to-latex-selective.js.map +1 -0
- package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.d.ts +2 -0
- package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js +41 -0
- package/dist/src/latex-export/examples/chem-react-to-latex-no-cdot.js.map +1 -0
- package/dist/src/latex-export/examples/energy-n-control-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/energy-n-control-to-markdown.js +58 -0
- package/dist/src/latex-export/examples/energy-n-control-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/extended-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/extended-to-markdown.js +37 -0
- package/dist/src/latex-export/examples/extended-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/fermentation-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/fermentation-to-latex.js +32 -0
- package/dist/src/latex-export/examples/fermentation-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/ga-production-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/ga-production-to-markdown.js +58 -0
- package/dist/src/latex-export/examples/ga-production-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/nimotuzumab-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/nimotuzumab-to-latex.js +53 -0
- package/dist/src/latex-export/examples/nimotuzumab-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.d.ts +2 -0
- package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js +50 -0
- package/dist/src/latex-export/examples/pk-pd-to-markdown-minimal.js.map +1 -0
- package/dist/src/latex-export/examples/pk-to-markdown.d.ts +2 -0
- package/dist/src/latex-export/examples/pk-to-markdown.js +35 -0
- package/dist/src/latex-export/examples/pk-to-markdown.js.map +1 -0
- package/dist/src/latex-export/examples/pollution-to-latex.d.ts +2 -0
- package/dist/src/latex-export/examples/pollution-to-latex.js +141 -0
- package/dist/src/latex-export/examples/pollution-to-latex.js.map +1 -0
- package/dist/src/latex-export/examples/robertson-to-latex-no-meta.d.ts +2 -0
- package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js +25 -0
- package/dist/src/latex-export/examples/robertson-to-latex-no-meta.js.map +1 -0
- package/dist/src/latex-export/generator/bracket-manager.d.ts +19 -0
- package/dist/src/latex-export/generator/bracket-manager.js +58 -0
- package/dist/src/latex-export/generator/bracket-manager.js.map +1 -0
- package/dist/src/latex-export/generator/document-builder.d.ts +13 -0
- package/dist/src/latex-export/generator/document-builder.js +433 -0
- package/dist/src/latex-export/generator/document-builder.js.map +1 -0
- package/dist/src/latex-export/generator/latex-generator.d.ts +23 -0
- package/dist/src/latex-export/generator/latex-generator.js +176 -0
- package/dist/src/latex-export/generator/latex-generator.js.map +1 -0
- package/dist/src/latex-export/index.d.ts +8 -0
- package/dist/src/latex-export/index.js +25 -0
- package/dist/src/latex-export/index.js.map +1 -0
- package/dist/src/latex-export/output/md-formatter.d.ts +16 -0
- package/dist/src/latex-export/output/md-formatter.js +27 -0
- package/dist/src/latex-export/output/md-formatter.js.map +1 -0
- package/dist/src/latex-export/output/tex-formatter.d.ts +5 -0
- package/dist/src/latex-export/output/tex-formatter.js +20 -0
- package/dist/src/latex-export/output/tex-formatter.js.map +1 -0
- package/dist/src/latex-export/parser/ast-parser.d.ts +7 -0
- package/dist/src/latex-export/parser/ast-parser.js +153 -0
- package/dist/src/latex-export/parser/ast-parser.js.map +1 -0
- package/dist/src/latex-export/parser/ivp-parser.d.ts +6 -0
- package/dist/src/latex-export/parser/ivp-parser.js +219 -0
- package/dist/src/latex-export/parser/ivp-parser.js.map +1 -0
- package/dist/src/latex-export/parser/line-joiner.d.ts +25 -0
- package/dist/src/latex-export/parser/line-joiner.js +80 -0
- package/dist/src/latex-export/parser/line-joiner.js.map +1 -0
- package/dist/src/latex-export/parser/tokenizer.d.ts +7 -0
- package/dist/src/latex-export/parser/tokenizer.js +143 -0
- package/dist/src/latex-export/parser/tokenizer.js.map +1 -0
- package/dist/src/latex-export/transformer/functions.d.ts +12 -0
- package/dist/src/latex-export/transformer/functions.js +47 -0
- package/dist/src/latex-export/transformer/functions.js.map +1 -0
- package/dist/src/latex-export/transformer/identifier.d.ts +23 -0
- package/dist/src/latex-export/transformer/identifier.js +194 -0
- package/dist/src/latex-export/transformer/identifier.js.map +1 -0
- package/dist/src/latex-export/transformer/operators.d.ts +9 -0
- package/dist/src/latex-export/transformer/operators.js +41 -0
- package/dist/src/latex-export/transformer/operators.js.map +1 -0
- package/dist/src/latex-export/types.d.ts +122 -0
- package/dist/src/latex-export/types.js +10 -0
- package/dist/src/latex-export/types.js.map +1 -0
- package/{src/pipeline/basic-pipeline-creator.ts → dist/src/pipeline/basic-pipeline-creator.d.ts} +11 -28
- package/dist/src/pipeline/basic-pipeline-creator.js.map +1 -0
- package/dist/src/pipeline/constants.d.ts +14 -0
- package/dist/src/pipeline/constants.js.map +1 -0
- package/dist/src/pipeline/index.d.ts +7 -0
- package/dist/src/pipeline/index.js.map +1 -0
- package/dist/src/pipeline/input.d.ts +3 -0
- package/dist/src/pipeline/input.js.map +1 -0
- package/dist/src/pipeline/loops-pipeline-creator.d.ts +124 -0
- package/dist/src/pipeline/loops-pipeline-creator.js.map +1 -0
- package/dist/src/pipeline/output.d.ts +10 -0
- package/{src → dist/src}/pipeline/output.js +1 -1
- package/dist/src/pipeline/output.js.map +1 -0
- package/dist/src/pipeline/pipeline-creator.d.ts +12 -0
- package/{src → dist/src}/pipeline/pipeline-creator.js +2 -0
- package/dist/src/pipeline/pipeline-creator.js.map +1 -0
- package/{src/pipeline/pipeline.ts → dist/src/pipeline/pipeline.d.ts} +10 -97
- package/dist/src/pipeline/pipeline.js.map +1 -0
- package/{src/pipeline/updates-pipeline-creator.ts → dist/src/pipeline/updates-pipeline-creator.d.ts} +15 -131
- package/dist/src/pipeline/updates-pipeline-creator.js.map +1 -0
- package/dist/src/scripting-tools/constants.d.ts +59 -0
- package/dist/src/scripting-tools/constants.js.map +1 -0
- package/dist/src/scripting-tools/index.d.ts +3 -0
- package/dist/src/scripting-tools/index.js.map +1 -0
- package/dist/src/scripting-tools/model-error.d.ts +10 -0
- package/{src → dist/src}/scripting-tools/model-error.js +2 -1
- package/dist/src/scripting-tools/model-error.js.map +1 -0
- package/dist/src/scripting-tools/scripting-tools.d.ts +277 -0
- package/{src → dist/src}/scripting-tools/scripting-tools.js +2 -4
- package/dist/src/scripting-tools/scripting-tools.js.map +1 -0
- package/dist/src/solver-tools/ab4-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ab4-method.js +3 -3
- package/dist/src/solver-tools/ab4-method.js.map +1 -0
- package/dist/src/solver-tools/ab5-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ab5-method.js +3 -3
- package/dist/src/solver-tools/ab5-method.js.map +1 -0
- package/dist/src/solver-tools/callbacks/callback-base.d.ts +8 -0
- package/dist/src/solver-tools/callbacks/callback-base.js.map +1 -0
- package/dist/src/solver-tools/callbacks/callback-tools.d.ts +6 -0
- package/dist/src/solver-tools/callbacks/callback-tools.js.map +1 -0
- package/dist/src/solver-tools/callbacks/iter-checker-callback.d.ts +12 -0
- package/{src → dist/src}/solver-tools/callbacks/iter-checker-callback.js +2 -0
- package/dist/src/solver-tools/callbacks/iter-checker-callback.js.map +1 -0
- package/dist/src/solver-tools/callbacks/time-checker-callback.d.ts +12 -0
- package/{src → dist/src}/solver-tools/callbacks/time-checker-callback.js +2 -2
- package/dist/src/solver-tools/callbacks/time-checker-callback.js.map +1 -0
- package/dist/src/solver-tools/cvode/common.d.ts +395 -0
- package/dist/src/solver-tools/cvode/common.js +483 -0
- package/dist/src/solver-tools/cvode/common.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode.d.ts +23 -0
- package/dist/src/solver-tools/cvode/cvode.js +1062 -0
- package/dist/src/solver-tools/cvode/cvode.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_adams.d.ts +22 -0
- package/dist/src/solver-tools/cvode/cvode_adams.js +124 -0
- package/dist/src/solver-tools/cvode/cvode_adams.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_bdf.d.ts +37 -0
- package/dist/src/solver-tools/cvode/cvode_bdf.js +153 -0
- package/dist/src/solver-tools/cvode/cvode_bdf.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_class.d.ts +116 -0
- package/dist/src/solver-tools/cvode/cvode_class.js +163 -0
- package/dist/src/solver-tools/cvode/cvode_class.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_hin.d.ts +24 -0
- package/dist/src/solver-tools/cvode/cvode_hin.js +119 -0
- package/dist/src/solver-tools/cvode/cvode_hin.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_io.d.ts +98 -0
- package/dist/src/solver-tools/cvode/cvode_io.js +202 -0
- package/dist/src/solver-tools/cvode/cvode_io.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_ls.d.ts +23 -0
- package/dist/src/solver-tools/cvode/cvode_ls.js +210 -0
- package/dist/src/solver-tools/cvode/cvode_ls.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_nls.d.ts +25 -0
- package/dist/src/solver-tools/cvode/cvode_nls.js +220 -0
- package/dist/src/solver-tools/cvode/cvode_nls.js.map +1 -0
- package/dist/src/solver-tools/cvode/cvode_root.d.ts +64 -0
- package/dist/src/solver-tools/cvode/cvode_root.js +415 -0
- package/dist/src/solver-tools/cvode/cvode_root.js.map +1 -0
- package/dist/src/solver-tools/cvode/dense_linalg.d.ts +50 -0
- package/dist/src/solver-tools/cvode/dense_linalg.js +131 -0
- package/dist/src/solver-tools/cvode/dense_linalg.js.map +1 -0
- package/dist/src/solver-tools/cvode/index.d.ts +24 -0
- package/dist/src/solver-tools/cvode/index.js +26 -0
- package/dist/src/solver-tools/cvode/index.js.map +1 -0
- package/dist/src/solver-tools/cvode-method.d.ts +47 -0
- package/dist/src/solver-tools/cvode-method.js +114 -0
- package/dist/src/solver-tools/cvode-method.js.map +1 -0
- package/dist/src/solver-tools/index.d.ts +16 -0
- package/{src → dist/src}/solver-tools/index.js +1 -0
- package/dist/src/solver-tools/index.js.map +1 -0
- package/dist/src/solver-tools/lin-alg-tools.d.ts +6 -0
- package/dist/src/solver-tools/lin-alg-tools.js.map +1 -0
- package/dist/src/solver-tools/lsoda/blas.d.ts +59 -0
- package/{src → dist/src}/solver-tools/lsoda/blas.js +11 -0
- package/dist/src/solver-tools/lsoda/blas.js.map +1 -0
- package/dist/src/solver-tools/lsoda/cfode.d.ts +18 -0
- package/{src → dist/src}/solver-tools/lsoda/cfode.js +11 -0
- package/dist/src/solver-tools/lsoda/cfode.js.map +1 -0
- package/dist/src/solver-tools/lsoda/common.d.ts +85 -0
- package/dist/src/solver-tools/lsoda/common.js +96 -0
- package/dist/src/solver-tools/lsoda/common.js.map +1 -0
- package/dist/src/solver-tools/lsoda/corfailure.d.ts +18 -0
- package/{src → dist/src}/solver-tools/lsoda/corfailure.js +11 -0
- package/dist/src/solver-tools/lsoda/corfailure.js.map +1 -0
- package/dist/src/solver-tools/lsoda/correction.d.ts +23 -0
- package/{src → dist/src}/solver-tools/lsoda/correction.js +11 -0
- package/dist/src/solver-tools/lsoda/correction.js.map +1 -0
- package/dist/src/solver-tools/lsoda/dense.d.ts +47 -0
- package/{src → dist/src}/solver-tools/lsoda/dense.js +13 -0
- package/dist/src/solver-tools/lsoda/dense.js.map +1 -0
- package/dist/src/solver-tools/lsoda/index.d.ts +16 -0
- package/dist/src/solver-tools/lsoda/index.js +15 -0
- package/dist/src/solver-tools/lsoda/index.js.map +1 -0
- package/dist/src/solver-tools/lsoda/intdy.d.ts +19 -0
- package/{src → dist/src}/solver-tools/lsoda/intdy.js +11 -0
- package/dist/src/solver-tools/lsoda/intdy.js.map +1 -0
- package/dist/src/solver-tools/lsoda/lsoda.d.ts +66 -0
- package/{src → dist/src}/solver-tools/lsoda/lsoda.js +24 -5
- package/dist/src/solver-tools/lsoda/lsoda.js.map +1 -0
- package/dist/src/solver-tools/lsoda/methodswitch.d.ts +21 -0
- package/{src → dist/src}/solver-tools/lsoda/methodswitch.js +11 -0
- package/dist/src/solver-tools/lsoda/methodswitch.js.map +1 -0
- package/dist/src/solver-tools/lsoda/orderswitch.d.ts +21 -0
- package/{src → dist/src}/solver-tools/lsoda/orderswitch.js +11 -0
- package/dist/src/solver-tools/lsoda/orderswitch.js.map +1 -0
- package/dist/src/solver-tools/lsoda/prja.d.ts +18 -0
- package/{src → dist/src}/solver-tools/lsoda/prja.js +11 -0
- package/dist/src/solver-tools/lsoda/prja.js.map +1 -0
- package/dist/src/solver-tools/lsoda/scaleh.d.ts +16 -0
- package/{src → dist/src}/solver-tools/lsoda/scaleh.js +11 -0
- package/dist/src/solver-tools/lsoda/scaleh.js.map +1 -0
- package/dist/src/solver-tools/lsoda/solsy.d.ts +17 -0
- package/dist/src/solver-tools/lsoda/solsy.js +25 -0
- package/dist/src/solver-tools/lsoda/solsy.js.map +1 -0
- package/dist/src/solver-tools/lsoda/stoda.d.ts +19 -0
- package/{src → dist/src}/solver-tools/lsoda/stoda.js +11 -0
- package/dist/src/solver-tools/lsoda/stoda.js.map +1 -0
- package/dist/src/solver-tools/lsoda-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/lsoda-method.js +23 -9
- package/dist/src/solver-tools/lsoda-method.js.map +1 -0
- package/dist/src/solver-tools/mrt-method.d.ts +47 -0
- package/{src → dist/src}/solver-tools/mrt-method.js +2 -2
- package/dist/src/solver-tools/mrt-method.js.map +1 -0
- package/dist/src/solver-tools/rk3-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/rk3-method.js +2 -2
- package/dist/src/solver-tools/rk3-method.js.map +1 -0
- package/dist/src/solver-tools/rk4-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/rk4-method.js +2 -2
- package/dist/src/solver-tools/rk4-method.js.map +1 -0
- package/dist/src/solver-tools/rkdp-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/rkdp-method.js +2 -2
- package/dist/src/solver-tools/rkdp-method.js.map +1 -0
- package/dist/src/solver-tools/ros34prw-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ros34prw-method.js +2 -2
- package/dist/src/solver-tools/ros34prw-method.js.map +1 -0
- package/dist/src/solver-tools/ros3prw-method.d.ts +46 -0
- package/{src → dist/src}/solver-tools/ros3prw-method.js +2 -2
- package/dist/src/solver-tools/ros3prw-method.js.map +1 -0
- package/{src/solver-tools/solver-defs.ts → dist/src/solver-tools/solver-defs.d.ts} +45 -84
- package/{src → dist/src}/solver-tools/solver-defs.js +1 -0
- package/dist/src/solver-tools/solver-defs.js.map +1 -0
- package/dist/src/worker-tools/index.d.ts +2 -0
- package/dist/src/worker-tools/index.js.map +1 -0
- package/{src/worker-tools/scripting.ts → dist/src/worker-tools/scripting.d.ts} +9 -91
- package/dist/src/worker-tools/scripting.js.map +1 -0
- package/dist/src/worker-tools/solving.d.ts +7 -0
- package/{src → dist/src}/worker-tools/solving.js +3 -1
- package/dist/src/worker-tools/solving.js.map +1 -0
- package/package.json +13 -12
- package/.claude/settings.local.json +0 -11
- package/.eslintrc.json +0 -45
- package/.github/ISSUE_TEMPLATE/bug_report.md +0 -29
- package/.github/ISSUE_TEMPLATE/feature_request.md +0 -20
- package/.github/PULL_REQUEST_TEMPLATE.md +0 -22
- package/.github/scripts/bump-js-api-version.sh +0 -106
- package/.github/scripts/check-output.sh +0 -20
- package/.github/scripts/iac-cfn-deploy.sh +0 -90
- package/.github/scripts/slack_api_request.sh +0 -65
- package/.github/scripts/test_package.sh +0 -270
- package/.github/workflows/deploy-docs.yml +0 -15
- package/.github/workflows/libraries.yaml +0 -305
- package/.github/workflows/test.yaml +0 -19
- package/CLAUDE.md +0 -98
- package/CONTRIBUTING.md +0 -74
- package/eslintrc.json +0 -45
- package/images/E5.png +0 -0
- package/images/HIRES.png +0 -0
- package/images/OREGO.png +0 -0
- package/images/POLL-full.png +0 -0
- package/images/POLL.png +0 -0
- package/images/ROBER.png +0 -0
- package/images/VDP0L.png +0 -0
- package/images/VDPOL.png +0 -0
- package/images/acid-prod.gif +0 -0
- package/index.js.map +0 -1
- package/index.ts +0 -17
- package/jest.config.js +0 -13
- package/src/examples/basic-use.js.map +0 -1
- package/src/examples/basic-use.ts +0 -44
- package/src/examples/bioreactor.js +0 -125
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- package/src/examples/check-methods.js.map +0 -1
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- package/src/examples/corr-probs.js.map +0 -1
- package/src/examples/corr-probs.ts +0 -155
- package/src/examples/cyclic-model.js.map +0 -1
- package/src/examples/cyclic-model.ts +0 -112
- package/src/examples/e5.js.map +0 -1
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- package/src/examples/hires.js.map +0 -1
- package/src/examples/hires.ts +0 -40
- package/src/examples/index.js.map +0 -1
- package/src/examples/index.ts +0 -34
- package/src/examples/model-updates.js.map +0 -1
- package/src/examples/model-updates.ts +0 -122
- package/src/examples/orego.js.map +0 -1
- package/src/examples/orego.ts +0 -25
- package/src/examples/pipeline-use.js.map +0 -1
- package/src/examples/pipeline-use.ts +0 -98
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- package/src/pipeline/index.js.map +0 -1
- package/src/pipeline/index.ts +0 -7
- package/src/pipeline/input.js.map +0 -1
- package/src/pipeline/input.ts +0 -55
- package/src/pipeline/loops-pipeline-creator.js.map +0 -1
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- package/src/pipeline/updates-pipeline-creator.js.map +0 -1
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export {Pipeline, Wrapper, applyPipeline, getPipelineCreator} from './pipeline';
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export {getInputVector} from './input';
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import {IVP} from '../scripting-tools';
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const inputVector = new Float64Array(size);
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/* eslint-disable max-len */
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import {IVP} from '../scripting-tools';
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import {MATH_CONSTS, MATH_FUNCS, POW_IDX} from '../scripting-tools/scripting-tools';
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import {getOutputCode} from './output';
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import {Pipeline, Wrapper} from './pipeline';
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import {PipelineCreator} from './pipeline-creator';
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import {argName2IdxMap, ARG, ARG_COL_IDX, CORRECTION_FACTOR, DEFAULT_CORRECTION, LOOP_MIN_COUNT} from './constants';
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/** Pipeline creator for cyclic model
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* @example
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* // This example shows how to apply pipelines and cyclic models.
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* // This approach can be used for in-webworkers analysis of models.
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* // Here, we consider pharmacokinetic-pharmacodynamic (PK-PD) simulation: two-compartment model.
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* import * as DGL from 'diff-grok';
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*
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* // 1. Model specification
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* const model = `#name: PK-PD
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* #tags: model
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* #description: Pharmacokinetic-pharmacodynamic (PK-PD) simulation: two-compartment model
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* #equations:
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* d(depot)/dt = -KA * depot
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* d(centr)/dt = KA * depot - CL * C2 - Q * C2 + Q * C3
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* d(peri)/dt = Q * C2 - Q * C3
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* d(eff)/dt = Kin - Kout * (1 - C2/(EC50 + C2)) * eff
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*
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* #expressions:
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* C2 = centr / V2
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* C3 = peri / V3
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*
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* #loop:
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* _count = 10 {caption: count; category: Dosing; min: 1; max: 20} [Number of doses]
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* depot += dose
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*
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* #argument: t
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* _t0 = 0 {units: h; caption: begin; category: Dosing; min: 0; max: 1} [Begin of dosing interval]
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* _t1 = 12 {units: h; caption: end; category: Dosing; min: 5; max: 15} [End of dosing interval]
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* _h = 1 {units: h; caption: step; category: Dosing; min: 0.01; max: 0.1} [Time step of simulation]
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*
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* #inits:
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* depot = 0 {category: Initial values}
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* centr = 0 {category: Initial values} [Central]
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* peri = 0 {category: Initial values} [Peripheral]
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* eff = 0.2 {category: Initial values} [Effective compartment rate]
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*
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* #parameters:
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* dose = 1e4 {category: Dosing; min: 1e3; max: 2e4; step: 1e3} [Dosage]
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* KA = 0.3 {caption: rate constant; category: Parameters; min: 0.1; max: 1}
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* CL = 2 {caption: clearance; category: Parameters; min: 1; max: 5}
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* V2 = 4 {caption: central volume; category: Parameters; min: 1; max: 10} [Central compartment volume]
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* Q = 1 {caption: inter rate; category: Parameters; min: 0.1; max: 1} [Intercompartmental rate]
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* V3 = 30 {caption: peri volume; category: Parameters; min: 20; max: 40} [Peripheral compartment volume]
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* EC50 = 8 {caption: effect; category: Parameters; min: 1; max: 10}
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* Kin = 0.2 {caption: Kin; category: Parameters; min: 0.1; max: 0.5} [The first-order production constant]
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* Kout = 0.2 {caption: Kout; category: Parameters; min: 0.1; max: 0.5} [The first-order dissipation rate constant]
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*
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* #tolerance: 1e-9`;
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*
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* // 2. Generate IVP-objects: for the main thread & for computations in webworkers
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* const ivp = DGL.getIVP(model);
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* const ivpWW = DGL.getIvp2WebWorker(ivp);
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*
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* // 3. Perform computations
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* try {
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* // 3.1) Extract names of outputs
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* const outputNames = DGL.getOutputNames(ivp);
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* const outSize = outputNames.length;
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*
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* // 3.2) Set model inputs
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* const inputs = {
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* _count: 10,
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* _t0: 0,
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* _t1: 16,
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* _h: 1,
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* depot: 0,
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* centr: 0,
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* peri: 0,
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* eff: 0.2,
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* dose: 10000,
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* KA: 0.63,
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* CL: 3.2,
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* V2: 6.58,
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* Q: 0.622,
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* V3: 35.6,
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* EC50: 5.41,
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* Kin: 0.272,
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* Kout: 0.276,
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* };
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*
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* const inputVector = DGL.getInputVector(inputs, ivp);
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*
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* // 3.3) Create a pipeline
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* const creator = DGL.getPipelineCreator(ivp);
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* const pipeline = creator.getPipeline(inputVector);
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*
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* // 3.4) Apply pipeline to perform computations
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* const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
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*
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* // 3.5) Print results
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*
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* // 3.5.1) Table header
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* let line = ' ';
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* outputNames.forEach((name) => line += name + ' ');
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* console.log(line);
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*
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* // 3.5.2) Table with solution
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* const length = solution[0].length;
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* for (let i = 0; i < length; ++i) {
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* line = '';
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*
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* for (let j = 0; j < outSize; ++j)
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* line += solution[j][i].toFixed(8) + ' ';
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*
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* console.log(line);
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* }
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* } catch (err) {
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* console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
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* } */
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export class CyclicModelPipelineCreator extends PipelineCreator {
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/**
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* @param ivp - initial value problem to be solved
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*/
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constructor(ivp: IVP) {
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super(ivp);
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if (ivp.loop === null)
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throw new Error('Incorrect use of CyclicModelPipelineCreator: model has no loop');
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}
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/** Return computations pipeline corresponding to the given input vector
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* @param inputs - input vector of the model
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*/
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public getPipeline(inputs: Float64Array): Pipeline {
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if (this.ivp.loop === null)
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throw new Error('Incorrect use of CyclicModelPipelineCreator: model has no loop');
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const argSize = argName2IdxMap.size;
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const restricted = inputs.length - 1;
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const repetitions = inputs[restricted];
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if (repetitions < LOOP_MIN_COUNT)
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throw new Error(`Incorrect repetitions count: ${repetitions}, expected: > 0`);
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const preProcLines: string[] = [];
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// Used math funcs
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this.ivp.usedMathFuncs.forEach((idx) => {
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if (idx !== POW_IDX)
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preProcLines.push(`const ${MATH_FUNCS[idx]} = (x) => Math.${MATH_FUNCS[idx]}(x);`);
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else
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preProcLines.push(`const pow = (x, y) => Math.pow(x, y);`);
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});
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// Used math consts
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this.ivp.usedMathConsts.forEach((idx) => {
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preProcLines.push(`const ${MATH_CONSTS[idx]} = Math.${MATH_CONSTS[idx]};`);
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});
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// Model constants
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if (this.ivp.consts !== null)
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this.ivp.consts.forEach((input, name) => preProcLines.push(`const ${name} = ${input.value};`));
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preProcLines.push(`const inputs = arguments[1].slice(0, ${restricted});`);
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// Extract inputs
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argName2IdxMap.forEach((idx, name) => preProcLines.push(`let ${name} = inputs[${idx}];`));
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this.ivp.deqs.solutionNames.forEach((name, idx) => {
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preProcLines.push(`let ${name} = inputs[${idx + argSize}];`);
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});
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if (this.ivp.params !== null) {
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const shift = argSize + this.ivp.deqs.solutionNames.length;
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let idx = 0;
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this.ivp.params.forEach((_, name) => {
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preProcLines.push(`let ${name} = inputs[${idx + shift}];`);
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++idx;
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});
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}
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// Updates
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this.ivp.loop.updates.forEach((expr) => preProcLines.push(`${expr};`));
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// Input vector update
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186
|
-
argName2IdxMap.forEach((idx, name) => preProcLines.push(`inputs[${idx}] = ${name};`));
|
|
187
|
-
|
|
188
|
-
this.ivp.deqs.solutionNames.forEach((name, idx) => {
|
|
189
|
-
preProcLines.push(`inputs[${idx + argSize}] = ${name};`);
|
|
190
|
-
});
|
|
191
|
-
|
|
192
|
-
if (this.ivp.params !== null) {
|
|
193
|
-
const shift = argSize + this.ivp.deqs.solutionNames.length;
|
|
194
|
-
let idx = 0;
|
|
195
|
-
|
|
196
|
-
this.ivp.params.forEach((_, name) => {
|
|
197
|
-
preProcLines.push(`inputs[${idx + shift}] = ${name};`);
|
|
198
|
-
++idx;
|
|
199
|
-
});
|
|
200
|
-
}
|
|
201
|
-
|
|
202
|
-
preProcLines.push(`return inputs;`);
|
|
203
|
-
|
|
204
|
-
const postProcLines = [
|
|
205
|
-
'const solution = arguments[0];',
|
|
206
|
-
'const lastIdx = solution[0].length - 1;',
|
|
207
|
-
'const inputs = new Float64Array(arguments[1]);',
|
|
208
|
-
`const duration = inputs[${argName2IdxMap.get(ARG.FINISH)}] - inputs[${argName2IdxMap.get(ARG.START)}];`,
|
|
209
|
-
`inputs[${argName2IdxMap.get(ARG.START)}] = inputs[${argName2IdxMap.get(ARG.FINISH)}];`,
|
|
210
|
-
`inputs[${argName2IdxMap.get(ARG.FINISH)}] += duration;`,
|
|
211
|
-
];
|
|
212
|
-
|
|
213
|
-
this.ivp.deqs.solutionNames.forEach((_, idx) => {
|
|
214
|
-
postProcLines.push(`inputs[${idx + argSize}] = solution[${idx + 1}][lastIdx];`);
|
|
215
|
-
});
|
|
216
|
-
|
|
217
|
-
postProcLines.push('return inputs;');
|
|
218
|
-
|
|
219
|
-
const preCode = preProcLines.join('\n');
|
|
220
|
-
const postCode = postProcLines.join('\n');
|
|
221
|
-
|
|
222
|
-
const wrappers = new Array<Wrapper>(repetitions);
|
|
223
|
-
|
|
224
|
-
for (let i = 0; i < repetitions; ++i) {
|
|
225
|
-
wrappers[i] = {
|
|
226
|
-
preproc: preCode,
|
|
227
|
-
out: null,
|
|
228
|
-
postproc: postCode,
|
|
229
|
-
};
|
|
230
|
-
}
|
|
231
|
-
|
|
232
|
-
wrappers[repetitions - 1].postproc = this.getArgumentCorrectionCode();
|
|
233
|
-
|
|
234
|
-
return {
|
|
235
|
-
wrappers: wrappers,
|
|
236
|
-
out: getOutputCode(this.ivp),
|
|
237
|
-
};
|
|
238
|
-
} // getPipeline
|
|
239
|
-
|
|
240
|
-
/** Return code for correction of an argument */
|
|
241
|
-
private getArgumentCorrectionCode(): string {
|
|
242
|
-
return `const arg = arguments[0][${ARG_COL_IDX}];
|
|
243
|
-
const length = arg.length;
|
|
244
|
-
const step = arg[1] - arg[0];
|
|
245
|
-
const correction = Math.min(step * ${CORRECTION_FACTOR}, ${DEFAULT_CORRECTION});
|
|
246
|
-
for (let i = 0; i < length - 1; ++i) {
|
|
247
|
-
if (arg[i + 1] - arg[i] < step)
|
|
248
|
-
arg[i] -= correction;
|
|
249
|
-
}
|
|
250
|
-
return arguments[0];`;
|
|
251
|
-
} // getArgumentCorrectionCode
|
|
252
|
-
} // CyclicModelPipelineCreator
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
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|
package/src/pipeline/output.ts
DELETED
|
@@ -1,201 +0,0 @@
|
|
|
1
|
-
// Features for creating output code for a pipeline
|
|
2
|
-
|
|
3
|
-
import {IVP, MATH_CONSTS, POW_IDX, MATH_FUNCS} from '../scripting-tools/scripting-tools';
|
|
4
|
-
import {ARG_INP_COUNT} from './constants';
|
|
5
|
-
|
|
6
|
-
const SHIFT = 1;
|
|
7
|
-
|
|
8
|
-
/** Return output for the model WITHOUT expressions */
|
|
9
|
-
function getOutputNoExprs(ivp: IVP): string {
|
|
10
|
-
const outputs = ivp.outputs;
|
|
11
|
-
if (outputs === null)
|
|
12
|
-
throw new Error('Grok Lib issue: no outputs in the initial value problem');
|
|
13
|
-
|
|
14
|
-
if (exprsInOutputs(ivp))
|
|
15
|
-
throw new Error('Grok Lib issue: no expressions are allowed');
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
const lines: string[] = ['const solution = [];'];
|
|
19
|
-
|
|
20
|
-
outputs.forEach((_, name) => {
|
|
21
|
-
if (name === ivp.arg.name)
|
|
22
|
-
lines.push('solution.push(arguments[0][0]);');
|
|
23
|
-
else {
|
|
24
|
-
const idx = ivp.deqs.solutionNames.indexOf(name);
|
|
25
|
-
|
|
26
|
-
if (idx > -1)
|
|
27
|
-
lines.push(`solution.push(arguments[0][${idx + 1}]);`);
|
|
28
|
-
}
|
|
29
|
-
});
|
|
30
|
-
|
|
31
|
-
lines.push('return solution;');
|
|
32
|
-
|
|
33
|
-
return lines.join('\n');
|
|
34
|
-
} // getOutputNoExprs
|
|
35
|
-
|
|
36
|
-
/** Return output for the model WITH expressions */
|
|
37
|
-
function getOutputWithExprs(ivp: IVP): string {
|
|
38
|
-
const outputs = ivp.outputs;
|
|
39
|
-
if (outputs === null)
|
|
40
|
-
throw new Error('Grok Lib issue: no outputs in the initial value problem');
|
|
41
|
-
|
|
42
|
-
const exprs = ivp.exprs;
|
|
43
|
-
|
|
44
|
-
if (!exprsInOutputs(ivp) || (exprs === null))
|
|
45
|
-
throw new Error('Grok Lib issue: expressions must be given');
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
const argName = ivp.arg.name;
|
|
49
|
-
const lines: string[] = ['const solution = [];'];
|
|
50
|
-
|
|
51
|
-
// Used math funcs
|
|
52
|
-
ivp.usedMathFuncs.forEach((idx) => {
|
|
53
|
-
if (idx !== POW_IDX)
|
|
54
|
-
lines.push(`const ${MATH_FUNCS[idx]} = (x) => Math.${MATH_FUNCS[idx]}(x);`);
|
|
55
|
-
else
|
|
56
|
-
lines.push(`const pow = (x, y) => Math.pow(x, y);`);
|
|
57
|
-
});
|
|
58
|
-
|
|
59
|
-
// Used math consts
|
|
60
|
-
ivp.usedMathConsts.forEach((idx) => lines.push(`const ${MATH_CONSTS[idx]} = Math.${MATH_CONSTS[idx]};`));
|
|
61
|
-
|
|
62
|
-
// Model constants
|
|
63
|
-
if (ivp.consts !== null)
|
|
64
|
-
ivp.consts.forEach((input, name) => lines.push(`const ${name} = ${input.value};`));
|
|
65
|
-
|
|
66
|
-
// Model parameters
|
|
67
|
-
if (ivp.params !== null) {
|
|
68
|
-
let idx = ARG_INP_COUNT + ivp.deqs.solutionNames.length;
|
|
69
|
-
ivp.params.forEach((_, name) => {
|
|
70
|
-
lines.push(`const ${name} = arguments[1][${idx}];`);
|
|
71
|
-
++idx;
|
|
72
|
-
});
|
|
73
|
-
}
|
|
74
|
-
|
|
75
|
-
lines.push('');
|
|
76
|
-
|
|
77
|
-
lines.push('const length = arguments[0][0].length;');
|
|
78
|
-
const funcNames = ivp.deqs.solutionNames;
|
|
79
|
-
|
|
80
|
-
lines.push(`let ${argName} = 0;`);
|
|
81
|
-
funcNames.forEach((name) => lines.push(`let ${name} = 0;`));
|
|
82
|
-
|
|
83
|
-
lines.push('');
|
|
84
|
-
|
|
85
|
-
exprs.forEach((_, name) => {
|
|
86
|
-
lines.push(`let ${name} = 0;`);
|
|
87
|
-
|
|
88
|
-
if (outputs.has(name))
|
|
89
|
-
lines.push(`let ${name}Raw = new Float64Array(length);`);
|
|
90
|
-
});
|
|
91
|
-
|
|
92
|
-
lines.push('');
|
|
93
|
-
|
|
94
|
-
lines.push('for (let k = 0; k < length; ++k) {');
|
|
95
|
-
lines.push(` ${argName} = arguments[0][0][k];`);
|
|
96
|
-
funcNames.forEach((name, idx) => lines.push(` ${name} = arguments[0][${SHIFT + idx}][k];`));
|
|
97
|
-
lines.push('');
|
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exprs.forEach((expr, name) => {
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lines.push(` ${name} = ${expr};`);
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if (outputs.has(name))
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});
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lines.push('}');
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lines.push('');
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outputs.forEach((_, name) => {
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if (name === argName)
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lines.push('solution.push(arguments[0][0]);');
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else {
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const idx = ivp.deqs.solutionNames.indexOf(name);
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if (idx > -1)
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lines.push(`solution.push(arguments[0][${idx + 1}]);`);
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else if (exprs.has(name))
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lines.push(`solution.push(${name}Raw);`);
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}
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});
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lines.push('return solution;');
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return lines.join('\n');
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} // getOutputWithExprs
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|
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/** Return a code for output extraction
|
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* @internal
|
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*/
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export function getOutputCode(ivp: IVP): string | null {
|
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const outputs = ivp.outputs;
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if (outputs === null)
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return null;
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|
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134
|
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checkApplicability(ivp);
|
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|
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|
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136
|
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if (exprsInOutputs(ivp))
|
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return getOutputWithExprs(ivp);
|
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else
|
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|
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return getOutputNoExprs(ivp);
|
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|
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} // getOutputCode
|
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|
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|
|
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|
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/** Check whether outputs have items from expressions */
|
|
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|
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function exprsInOutputs(ivp: IVP): boolean {
|
|
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|
-
const outputs = ivp.outputs;
|
|
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|
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if (outputs === null)
|
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|
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return false;
|
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147
|
-
|
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|
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const exprs = ivp.exprs;
|
|
149
|
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if (exprs === null)
|
|
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|
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return false;
|
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151
|
-
|
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|
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let flag = false;
|
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153
|
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|
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154
|
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exprs.forEach((_, name) => flag ||= outputs.has(name));
|
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|
-
|
|
156
|
-
return flag;
|
|
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|
-
}
|
|
158
|
-
|
|
159
|
-
/** Check applicability of model outputs */
|
|
160
|
-
function checkApplicability(ivp: IVP): void {
|
|
161
|
-
const outputs = ivp.outputs;
|
|
162
|
-
|
|
163
|
-
if (outputs === null)
|
|
164
|
-
throw new Error('Model has no outputs');
|
|
165
|
-
|
|
166
|
-
const exprs = ivp.exprs;
|
|
167
|
-
if (exprs === null)
|
|
168
|
-
return;
|
|
169
|
-
|
|
170
|
-
if (ivp.loop !== null) {
|
|
171
|
-
if (exprsInOutputs(ivp))
|
|
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|
-
throw new Error('Non-supported model: expressions in output & loops');
|
|
173
|
-
|
|
174
|
-
return;
|
|
175
|
-
}
|
|
176
|
-
|
|
177
|
-
if (ivp.updates !== null) {
|
|
178
|
-
if (exprsInOutputs(ivp))
|
|
179
|
-
throw new Error('Non-supported model: expressions in output and updates');
|
|
180
|
-
}
|
|
181
|
-
} // checkApplicability
|
|
182
|
-
|
|
183
|
-
/** Return names of the model outputs
|
|
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|
-
* @param ivp - initial value problem
|
|
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|
-
* @returns an array of names of the model outputs
|
|
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|
-
*/
|
|
187
|
-
export function getOutputNames(ivp: IVP): string[] {
|
|
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|
-
const outputs = ivp.outputs;
|
|
189
|
-
if (outputs === null)
|
|
190
|
-
return [ivp.arg.name].concat(ivp.deqs.solutionNames);
|
|
191
|
-
|
|
192
|
-
const names = new Array<string>(outputs.size);
|
|
193
|
-
|
|
194
|
-
let idx = 0;
|
|
195
|
-
outputs.forEach((output) => {
|
|
196
|
-
names[idx] = output.caption;
|
|
197
|
-
++idx;
|
|
198
|
-
});
|
|
199
|
-
|
|
200
|
-
return names;
|
|
201
|
-
} // getOutputNames
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"pipeline-creator.js","sourceRoot":"","sources":["pipeline-creator.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,cAAc,EAAC,MAAM,UAAU,CAAC;AAGxC,0DAA0D;AAC1D,MAAM,OAAgB,eAAe;IAInC,YAAY,GAAQ;QAClB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAC;QACf,IAAI,CAAC,WAAW,GAAG,cAAc,CAAC,GAAG,CAAC,CAAC;IACzC,CAAC;IAAA,CAAC;CAMH"}
|
|
@@ -1,20 +0,0 @@
|
|
|
1
|
-
/* eslint-disable max-len */
|
|
2
|
-
import {IVP} from '../scripting-tools';
|
|
3
|
-
import {getOutputNames} from './output';
|
|
4
|
-
import {Pipeline} from './pipeline';
|
|
5
|
-
|
|
6
|
-
/** Creator of a pipeline for in-webworker computations */
|
|
7
|
-
export abstract class PipelineCreator {
|
|
8
|
-
protected ivp: IVP;
|
|
9
|
-
protected outputNames: string[];
|
|
10
|
-
|
|
11
|
-
constructor(ivp: IVP) {
|
|
12
|
-
this.ivp = ivp;
|
|
13
|
-
this.outputNames = getOutputNames(ivp);
|
|
14
|
-
};
|
|
15
|
-
|
|
16
|
-
/** Return computational pipeline corresponding to the given model input
|
|
17
|
-
* @param inputs - a vector of model inputs
|
|
18
|
-
*/
|
|
19
|
-
public abstract getPipeline(inputs: Float64Array): Pipeline;
|
|
20
|
-
}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"pipeline.js","sourceRoot":"","sources":["pipeline.ts"],"names":[],"mappings":"AAAA,4BAA4B;AAC5B,OAAO,EAAgB,QAAQ,EAAC,MAAM,iBAAiB,CAAC;AAExD,OAAO,EAAC,yBAAyB,EAAC,MAAM,0BAA0B,CAAC;AAEnE,OAAO,EAAC,2BAA2B,EAAC,MAAM,4BAA4B,CAAC;AACvE,OAAO,EAAC,0BAA0B,EAAC,MAAM,0BAA0B,CAAC;AA2BpE,iCAAiC;AACjC,SAAS,MAAM,CAAC,IAAkB,EAAE,IAAkB;IACpD,MAAM,MAAM,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC;IAC3D,MAAM,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;IACpB,MAAM,CAAC,GAAG,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC;IAC9B,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgGG;AACH,MAAM,UAAU,aAAa,CAAC,QAAkB,EAAE,GAAkB,EAAE,YAA0B;IAC9F,IAAI,QAAQ,GAAmB,EAAE,CAAC;IAClC,IAAI,eAA+B,CAAC;IACpC,IAAI,IAAc,CAAC;IACnB,IAAI,MAAM,GAAG,IAAI,YAAY,CAAC,YAAY,CAAC,CAAC;IAC5C,MAAM,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC;IACnC,IAAI,IAAa,CAAC;IAClB,IAAI,iBAAiB,GAAG,IAAI,CAAC;IAE7B,MAAM,UAAU,GAAG,QAAQ,CAAC,MAAM,CAAC;IAEnC,IAAI,UAAU,GAAG,CAAC;QAChB,MAAM,IAAI,KAAK,CAAC,gCAAgC,UAAU,SAAS,CAAC,CAAC;IAEvE,yBAAyB;IACzB,KAAK,IAAI,GAAG,GAAG,CAAC,EAAE,GAAG,GAAG,UAAU,EAAE,EAAE,GAAG,EAAE,CAAC;QAC1C,IAAI,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QAErB,iBAAiB;QACjB,IAAI,IAAI,CAAC,OAAO,KAAK,IAAI,EAAE,CAAC;YAC1B,IAAI,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;YAClC,MAAM,GAAG,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;YAChC,qBAAqB;QACvB,CAAC;QAED,sBAAsB;QAEtB,oBAAoB;QACpB,eAAe,GAAG,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;QAExC,uBAAuB;QACvB,IAAI,IAAI,CAAC,GAAG,KAAK,IAAI,EAAE,CAAC;YACtB,IAAI,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YAC9B,eAAe,GAAG,IAAI,CAAC,eAAe,EAAE,MAAM,CAAC,CAAC;QAClD,CAAC;QAED,IAAI,iBAAiB,EAAE,CAAC;YACtB,QAAQ,GAAG,eAAe,CAAC;YAC3B,iBAAiB,GAAG,KAAK,CAAC;QAC5B,CAAC;;YACC,eAAe,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;QAEpF,kBAAkB;QAClB,IAAI,IAAI,CAAC,QAAQ,KAAK,IAAI,EAAE,CAAC;YAC3B,IAAI,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;YACnC,MAAM,GAAG,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;YAChC,qBAAqB;QACvB,CAAC;QAED,sBAAsB;IACxB,CAAC;IAED,uBAAuB;IACvB,MAAM,GAAG,GAAG,QAAQ,CAAC,GAAG,CAAC;IAEzB,IAAI,GAAG,KAAK,IAAI,EAAE,CAAC;QACjB,IAAI,GAAG,IAAI,QAAQ,CAAC,GAAG,CAAC,CAAC;QAEzB,OAAO,IAAI,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAC;IACtC,CAAC;IAED,OAAO,QAAQ,CAAC;AAClB,CAAC,CAAC,kBAAkB;AAEpB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA8FG;AACH,MAAM,UAAU,kBAAkB,CAAC,GAAQ;IACzC,IAAI,GAAG,CAAC,OAAO,KAAK,IAAI;QACtB,OAAO,IAAI,2BAA2B,CAAC,GAAG,CAAC,CAAC;IAE9C,IAAI,GAAG,CAAC,IAAI,KAAK,IAAI;QACnB,OAAO,IAAI,0BAA0B,CAAC,GAAG,CAAC,CAAC;IAE7C,OAAO,IAAI,yBAAyB,CAAC,GAAG,CAAC,CAAC;AAC5C,CAAC"}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"updates-pipeline-creator.js","sourceRoot":"","sources":["updates-pipeline-creator.ts"],"names":[],"mappings":"AAAA,4BAA4B;AAG5B,OAAO,EAAC,WAAW,EAAE,UAAU,EAAE,OAAO,EAAC,MAAM,oCAAoC,CAAC;AACpF,OAAO,EAAC,aAAa,EAAC,MAAM,UAAU,CAAC;AAEvC,OAAO,EAAC,eAAe,EAAC,MAAM,oBAAoB,CAAC;AAEnD,OAAO,EAAC,cAAc,EAAE,GAAG,EAAE,WAAW,EAAE,iBAAiB,EAAE,kBAAkB,EAAC,MAAM,aAAa,CAAC;AAEpG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA0HG;AACH,MAAM,OAAO,2BAA4B,SAAQ,eAAe;IAC9D;;OAEG;IACH,YAAY,GAAQ;QAClB,KAAK,CAAC,GAAG,CAAC,CAAC;QAEX,IAAI,GAAG,CAAC,OAAO,KAAK,IAAI;YACtB,MAAM,IAAI,KAAK,CAAC,oEAAoE,CAAC,CAAC;IAC1F,CAAC;IAED;;MAEE;IACK,WAAW,CAAC,MAAoB;QACrC,IAAI,IAAI,CAAC,GAAG,CAAC,OAAO,KAAK,IAAI;YAC3B,MAAM,IAAI,KAAK,CAAC,oEAAoE,CAAC,CAAC;QAExF,MAAM,QAAQ,GAAc,CAAC;gBAC3B,OAAO,EAAE,IAAI;gBACb,GAAG,EAAE,IAAI;gBACT,QAAQ,EAAE,IAAI;aACf,CAAC,CAAC;QAEH,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,MAAM,EAAE,EAAE;YAClC,MAAM,KAAK,GAAa,EAAE,CAAC;YAE3B,kBAAkB;YAClB,IAAI,CAAC,GAAG,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,EAAE;gBACrC,IAAI,GAAG,KAAK,OAAO;oBACjB,KAAK,CAAC,IAAI,CAAC,SAAS,UAAU,CAAC,GAAG,CAAC,kBAAkB,UAAU,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;;oBAE5E,KAAK,CAAC,IAAI,CAAC,uCAAuC,CAAC,CAAC;YACxD,CAAC,CAAC,CAAC;YAEH,mBAAmB;YACnB,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,WAAW,CAAC,GAAG,CAAC,WAAW,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;YAE9G,kBAAkB;YAClB,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,KAAK,IAAI;gBAC1B,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,IAAI,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,IAAI,MAAM,KAAK,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;YAE1F,KAAK,CAAC,IAAI,CAAC,gDAAgD,CAAC,CAAC;YAC7D,KAAK,CAAC,IAAI,CAAC,gCAAgC,CAAC,CAAC;YAE7C,YAAY;YACZ,cAAc,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,IAAI,aAAa,GAAG,IAAI,CAAC,CAAC,CAAC;YAEnF,YAAY;YACZ,KAAK,CAAC,IAAI,CAAC,yCAAyC,CAAC,CAAC;YAEtD,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE;gBAChD,KAAK,CAAC,IAAI,CAAC,OAAO,IAAI,eAAe,GAAG,GAAG,CAAC,aAAa,CAAC,CAAC;YAC7D,CAAC,CAAC,CAAC;YAEH,aAAa;YACb,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,KAAK,IAAI,EAAE,CAAC;gBAC7B,MAAM,KAAK,GAAG,cAAc,CAAC,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,aAAa,CAAC,MAAM,CAAC;gBACvE,IAAI,GAAG,GAAG,CAAC,CAAC;gBAEZ,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,EAAE;oBAClC,KAAK,CAAC,IAAI,CAAC,OAAO,IAAI,aAAa,GAAG,GAAG,KAAK,IAAI,CAAC,CAAC;oBACpD,EAAE,GAAG,CAAC;gBACR,CAAC,CAAC,CAAC;YACL,CAAC;YAED,UAAU;YACV,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC;YAEzD,kBAAkB;YAClB,KAAK,CAAC,IAAI,CAAC,oBAAoB,MAAM,CAAC,eAAe,GAAG,CAAC,CAAC;YAC1D,KAAK,CAAC,IAAI,CAAC,GAAG,GAAG,CAAC,KAAK,MAAM,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC;YAC5C,KAAK,CAAC,IAAI,CAAC,GAAG,GAAG,CAAC,MAAM,eAAe,CAAC,CAAC;YAEzC,sBAAsB;YACtB,cAAc,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,UAAU,GAAG,OAAO,IAAI,GAAG,CAAC,CAAC,CAAC;YAE/E,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE;gBAChD,KAAK,CAAC,IAAI,CAAC,UAAU,GAAG,GAAG,cAAc,CAAC,IAAI,OAAO,IAAI,GAAG,CAAC,CAAC;YAChE,CAAC,CAAC,CAAC;YAEH,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,KAAK,IAAI,EAAE,CAAC;gBAC7B,MAAM,KAAK,GAAG,cAAc,CAAC,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,aAAa,CAAC,MAAM,CAAC;gBACvE,IAAI,GAAG,GAAG,CAAC,CAAC;gBAEZ,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,EAAE;oBAClC,KAAK,CAAC,IAAI,CAAC,UAAU,GAAG,GAAG,KAAK,OAAO,IAAI,GAAG,CAAC,CAAC;oBAChD,EAAE,GAAG,CAAC;gBACR,CAAC,CAAC,CAAC;YACL,CAAC;YAED,KAAK,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;YAE7B,QAAQ,CAAC,IAAI,CAAC;gBACZ,OAAO,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC;gBACzB,GAAG,EAAE,IAAI;gBACT,QAAQ,EAAE,IAAI;aACf,CAAC,CAAC;QACL,CAAC,CAAC,CAAC;QAEH,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,QAAQ,GAAG,IAAI,CAAC,yBAAyB,EAAE,CAAC;QAE1E,OAAO;YACL,QAAQ,EAAE,QAAQ;YAClB,GAAG,EAAE,aAAa,CAAC,IAAI,CAAC,GAAG,CAAC;SAC7B,CAAC;IACJ,CAAC,CAAC,cAAc;IAEhB,gDAAgD;IACxC,yBAAyB;QAC/B,OAAO,4BAA4B,WAAW;;;yCAGT,iBAAiB,KAAK,kBAAkB;;;;;yBAKxD,CAAC;IACxB,CAAC,CAAC,4BAA4B;CAC/B,CAAC,8BAA8B"}
|
|
@@ -1 +0,0 @@
|
|
|
1
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// Control constants
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/** @internal */
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export const CONTROL_TAG = '#';
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/** @internal */
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export const CONTROL_TAG_LEN = CONTROL_TAG.length;
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/** @internal */
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export const DF_NAME = 'df';
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/** @internal */
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export const MAX_LINE_CHART = 4;
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/** Control expressions for the problem specifying
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* @internal
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*/
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export enum CONTROL_EXPR {
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NAME = '#name',
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TAGS = '#tags',
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DESCR = '#description',
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DIF_EQ = '#equations',
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EXPR = '#expressions',
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ARG = '#argument',
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INITS = '#inits',
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CONSTS = '#constants',
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PARAMS = '#parameters',
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TOL = '#tolerance',
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LOOP = '#loop',
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UPDATE = '#update',
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RUN_ON_OPEN = '#meta.runOnOpen',
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RUN_ON_INPUT = '#meta.runOnInput',
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OUTPUT = '#output',
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COMMENT = '#comment',
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SOLVER = '#meta.solver',
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INPUTS = '#meta.inputs',
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};
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/** Loop consts
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* @internal
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* */
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export enum LOOP {
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MIN_LINES_COUNT = 1,
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COUNT_IDX = 0,
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COUNT_NAME = '_count',
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MIN_COUNT = 1,
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};
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-
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/** UPDATE consts
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* @internal
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*/
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export enum UPDATE {
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MIN_LINES_COUNT = 1,
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DURATION_IDX = 0,
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DURATION = '_duration',
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};
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/** Ranges of the solver options
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* @internal
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*/
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export const SOLVER_OPTIONS_RANGES = new Map([
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['maxTime', {min: 1, max: 10000}],
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['scale', {min: 0.5, max: 1}],
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]);
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/** @internal */
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export const TINY = 0.0001;
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/** @internal */
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export const STEP_RATIO = 0.5;
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@@ -1,8 +0,0 @@
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export {DF_NAME, CONTROL_EXPR, MAX_LINE_CHART} from './constants';
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export {DifEqs, getIVP, getScriptLines, getScriptParams, getJScode, IVP, Input, SCRIPTING,
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4
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BRACE_OPEN, BRACE_CLOSE, BRACKET_OPEN, BRACKET_CLOSE, ANNOT_SEPAR, CONTROL_SEP,
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STAGE_COL_NAME, ARG_INPUT_KEYS, DEFAULT_SOLVER_SETTINGS, getFunc4worker, Loop, Update,
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Output, Arg} from './scripting-tools';
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export {ModelError} from './model-error';
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