claude-flow-novice 1.0.0

package/dist/src/neural/NeuralDomainMapper.js

@@ -0,0 +1,1137 @@
+/**
+ * Neural Domain Mapper - GNN-style Domain Relationship Mapping
+ *
+ * Implements Graph Neural Network (GNN) architecture for mapping and analyzing
+ * domain relationships, calculating cohesion scores, identifying cross-domain
+ * dependencies, and providing predictive boundary optimization.
+ *
+ * This class enables advanced domain analysis and relationship mapping for
+ * the Claude Flow orchestration system, supporting dynamic domain boundaries
+ * and intelligent task routing based on learned patterns.
+ *
+ * @author Claude Flow Neural Team
+ * @version 2.0.0
+ * @since 2024-12-01
+ */ import { EventEmitter } from 'events';
+// ===== Main Class =====
+/**
+ * Neural Domain Mapper - Advanced GNN-based domain relationship analysis
+ *
+ * This class implements a sophisticated Graph Neural Network architecture
+ * for analyzing and optimizing domain relationships in complex systems.
+ * It provides capabilities for:
+ *
+ * 1. Converting domain structures to graph representations
+ * 2. Calculating domain cohesion scores using multiple metrics
+ * 3. Identifying and analyzing cross-domain dependencies
+ * 4. Providing predictive boundary optimization suggestions
+ * 5. Training on domain relationship patterns
+ * 6. Making inferences about optimal domain organization
+ */ export class NeuralDomainMapper extends EventEmitter {
+    graph;
+    layers;
+    trainingConfig;
+    trainingState;
+    patternStore;
+    isTraining = false;
+    modelVersion = '1.0.0';
+    weights = new Map();
+    biases = new Map();
+    /**
+   * Initialize the Neural Domain Mapper
+   *
+   * @param config Training configuration
+   * @param patternStore Pattern storage system
+   */ constructor(config = {}, patternStore){
+        super();
+        this.trainingConfig = {
+            learningRate: 0.001,
+            batchSize: 32,
+            epochs: 100,
+            optimizer: 'adam',
+            lossFunction: 'mse',
+            regularization: {
+                l1: 0.0001,
+                l2: 0.0001,
+                dropout: 0.1
+            },
+            earlyStoping: {
+                enabled: true,
+                patience: 10,
+                minDelta: 0.001
+            },
+            validationSplit: 0.2,
+            ...config
+        };
+        this.graph = {
+            nodes: new Map(),
+            edges: new Map(),
+            metadata: {
+                created: Date.now(),
+                lastTraining: 0,
+                version: this.modelVersion,
+                cohesionScore: 0,
+                totalNodes: 0,
+                totalEdges: 0
+            }
+        };
+        this.layers = [
+            {
+                type: 'gcn',
+                inputDim: 64,
+                outputDim: 128,
+                dropout: 0.1,
+                activation: 'relu',
+                normalization: 'batch'
+            },
+            {
+                type: 'gat',
+                inputDim: 128,
+                outputDim: 64,
+                numHeads: 8,
+                dropout: 0.1,
+                activation: 'relu',
+                normalization: 'layer'
+            },
+            {
+                type: 'gcn',
+                inputDim: 64,
+                outputDim: 32,
+                dropout: 0.05,
+                activation: 'tanh'
+            }
+        ];
+        this.trainingState = {
+            epoch: 0,
+            loss: Infinity,
+            accuracy: 0,
+            learningRate: this.trainingConfig.learningRate,
+            optimizer: this.trainingConfig.optimizer,
+            checkpoints: []
+        };
+        this.patternStore = patternStore || this.createDefaultPatternStore();
+        this.initializeWeights();
+    }
+    // ===== Domain to Graph Conversion =====
+    /**
+   * Convert domain structure to graph format
+   *
+   * @param domains Domain definitions
+   * @param relationships Domain relationships
+   * @returns Constructed domain graph
+   */ convertToGraph(domains, relationships) {
+        // Clear existing graph
+        this.graph.nodes.clear();
+        this.graph.edges.clear();
+        // Convert domains to nodes
+        for (const domain of domains){
+            const node = {
+                id: domain.id,
+                name: domain.name,
+                type: domain.type,
+                features: this.extractDomainFeatures(domain),
+                metadata: {
+                    size: domain.metadata?.size || 1,
+                    complexity: domain.metadata?.complexity || 0.5,
+                    stability: domain.metadata?.stability || 0.8,
+                    dependencies: domain.metadata?.dependencies || [],
+                    lastUpdated: domain.metadata?.lastUpdated || Date.now(),
+                    version: domain.metadata?.version || '1.0.0'
+                },
+                activation: 0,
+                embedding: this.initializeNodeEmbedding(domain.id)
+            };
+            this.graph.nodes.set(domain.id, node);
+        }
+        // Convert relationships to edges
+        for (const rel of relationships){
+            const edgeId = `${rel.source}->${rel.target}`;
+            const edge = {
+                source: rel.source,
+                target: rel.target,
+                weight: rel.weight || 1.0,
+                type: rel.type,
+                features: this.extractEdgeFeatures(rel),
+                metadata: {
+                    frequency: rel.metadata?.frequency || 1,
+                    latency: rel.metadata?.latency || 100,
+                    reliability: rel.metadata?.reliability || 0.99,
+                    bandwidth: rel.metadata?.bandwidth || 1000,
+                    direction: rel.metadata?.direction || 'unidirectional'
+                }
+            };
+            this.graph.edges.set(edgeId, edge);
+        }
+        // Update graph metadata
+        this.graph.metadata.totalNodes = this.graph.nodes.size;
+        this.graph.metadata.totalEdges = this.graph.edges.size;
+        this.graph.metadata.lastTraining = 0; // Reset training timestamp
+        this.emit('graph-updated', this.graph);
+        return this.graph;
+    }
+    /**
+   * Extract numerical features from domain definition
+   */ extractDomainFeatures(domain) {
+        const features = [];
+        // Type encoding (one-hot)
+        const types = [
+            'functional',
+            'technical',
+            'business',
+            'integration',
+            'data',
+            'ui',
+            'api'
+        ];
+        const typeEncoding = types.map((t)=>t === domain.type ? 1 : 0);
+        features.push(...typeEncoding);
+        // Metadata features
+        features.push(domain.metadata?.size || 1, domain.metadata?.complexity || 0.5, domain.metadata?.stability || 0.8, (domain.metadata?.dependencies?.length || 0) / 10, Math.min((Date.now() - (domain.metadata?.lastUpdated || Date.now())) / (1000 * 60 * 60 * 24), 1));
+        // Pad to standard feature size
+        while(features.length < 64){
+            features.push(0);
+        }
+        return features.slice(0, 64); // Ensure consistent size
+    }
+    /**
+   * Extract numerical features from edge definition
+   */ extractEdgeFeatures(relationship) {
+        const features = [];
+        // Type encoding
+        const types = [
+            'dependency',
+            'communication',
+            'data-flow',
+            'inheritance',
+            'composition',
+            'aggregation'
+        ];
+        const typeEncoding = types.map((t)=>t === relationship.type ? 1 : 0);
+        features.push(...typeEncoding);
+        // Metadata features
+        features.push(relationship.metadata?.frequency || 1, relationship.metadata?.latency || 100, relationship.metadata?.reliability || 0.99, relationship.metadata?.bandwidth || 1000, relationship.metadata?.direction === 'bidirectional' ? 1 : 0);
+        // Pad to standard feature size
+        while(features.length < 32){
+            features.push(0);
+        }
+        return features.slice(0, 32);
+    }
+    // ===== Domain Cohesion Analysis =====
+    /**
+   * Calculate comprehensive domain cohesion scores
+   *
+   * @returns Detailed cohesion analysis
+   */ async calculateDomainCohesion() {
+        const domainScores = new Map();
+        const weakPoints = [];
+        let totalStructural = 0;
+        let totalFunctional = 0;
+        let totalBehavioral = 0;
+        let totalSemantic = 0;
+        // Calculate per-domain cohesion
+        for (const [domainId, node] of this.graph.nodes){
+            const structural = this.calculateStructuralCohesion(domainId);
+            const functional = this.calculateFunctionalCohesion(domainId);
+            const behavioral = this.calculateBehavioralCohesion(domainId);
+            const semantic = this.calculateSemanticCohesion(domainId);
+            const domainScore = (structural + functional + behavioral + semantic) / 4;
+            domainScores.set(domainId, domainScore);
+            totalStructural += structural;
+            totalFunctional += functional;
+            totalBehavioral += behavioral;
+            totalSemantic += semantic;
+            // Identify weak points
+            if (domainScore < 0.6) {
+                const suggestions = this.generateCohesionSuggestions(domainId, {
+                    structural,
+                    functional,
+                    behavioral,
+                    semantic
+                });
+                weakPoints.push({
+                    domainId,
+                    score: domainScore,
+                    reason: this.identifyWeaknessReason(structural, functional, behavioral, semantic),
+                    suggestions
+                });
+            }
+        }
+        const nodeCount = this.graph.nodes.size;
+        const overallScore = Array.from(domainScores.values()).reduce((sum, score)=>sum + score, 0) / nodeCount;
+        const analysis = {
+            overallScore,
+            domainScores,
+            factors: {
+                structural: totalStructural / nodeCount,
+                functional: totalFunctional / nodeCount,
+                behavioral: totalBehavioral / nodeCount,
+                semantic: totalSemantic / nodeCount
+            },
+            weakPoints,
+            recommendations: await this.generateCohesionRecommendations(domainScores, weakPoints)
+        };
+        // Update graph metadata
+        this.graph.metadata.cohesionScore = overallScore;
+        this.emit('cohesion-calculated', analysis);
+        return analysis;
+    }
+    /**
+   * Calculate structural cohesion based on graph connectivity
+   */ calculateStructuralCohesion(domainId) {
+        const node = this.graph.nodes.get(domainId);
+        if (!node) return 0;
+        const outgoingEdges = Array.from(this.graph.edges.values()).filter((e)=>e.source === domainId);
+        const incomingEdges = Array.from(this.graph.edges.values()).filter((e)=>e.target === domainId);
+        const totalEdges = outgoingEdges.length + incomingEdges.length;
+        const maxPossibleEdges = (this.graph.nodes.size - 1) * 2; // Bidirectional
+        const connectivity = totalEdges / maxPossibleEdges;
+        // Consider edge weights
+        const weightedConnectivity = (outgoingEdges.reduce((sum, e)=>sum + e.weight, 0) + incomingEdges.reduce((sum, e)=>sum + e.weight, 0)) / (totalEdges || 1);
+        return Math.min((connectivity + weightedConnectivity) / 2, 1);
+    }
+    /**
+   * Calculate functional cohesion based on domain purpose alignment
+   */ calculateFunctionalCohesion(domainId) {
+        const node = this.graph.nodes.get(domainId);
+        if (!node) return 0;
+        // Analyze connected domains for functional similarity
+        const connectedDomains = this.getConnectedDomains(domainId);
+        const sameTypePenalty = connectedDomains.filter((d)=>d.type === node.type).length / (connectedDomains.length || 1);
+        // Consider domain complexity and size alignment
+        const avgComplexity = connectedDomains.reduce((sum, d)=>sum + d.metadata.complexity, 0) / (connectedDomains.length || 1);
+        const complexityAlignment = 1 - Math.abs(node.metadata.complexity - avgComplexity);
+        return sameTypePenalty * 0.6 + complexityAlignment * 0.4;
+    }
+    /**
+   * Calculate behavioral cohesion based on interaction patterns
+   */ calculateBehavioralCohesion(domainId) {
+        const relatedEdges = Array.from(this.graph.edges.values()).filter((e)=>e.source === domainId || e.target === domainId);
+        if (relatedEdges.length === 0) return 0.5; // Neutral for isolated domains
+        // Analyze interaction frequency and reliability
+        const avgFrequency = relatedEdges.reduce((sum, e)=>sum + e.metadata.frequency, 0) / relatedEdges.length;
+        const avgReliability = relatedEdges.reduce((sum, e)=>sum + e.metadata.reliability, 0) / relatedEdges.length;
+        const avgLatency = relatedEdges.reduce((sum, e)=>sum + e.metadata.latency, 0) / relatedEdges.length;
+        // Normalize and combine metrics
+        const frequencyScore = Math.min(avgFrequency / 10, 1); // Assume 10 is high frequency
+        const reliabilityScore = avgReliability;
+        const latencyScore = Math.max(0, 1 - avgLatency / 1000); // Assume 1000ms is poor latency
+        return (frequencyScore + reliabilityScore + latencyScore) / 3;
+    }
+    /**
+   * Calculate semantic cohesion based on domain naming and metadata
+   */ calculateSemanticCohesion(domainId) {
+        const node = this.graph.nodes.get(domainId);
+        if (!node) return 0;
+        const connectedDomains = this.getConnectedDomains(domainId);
+        // Analyze naming similarity (simplified semantic analysis)
+        let semanticScore = 0;
+        for (const connectedDomain of connectedDomains){
+            const nameSimilarity = this.calculateNameSimilarity(node.name, connectedDomain.name);
+            const typeSimilarity = node.type === connectedDomain.type ? 1 : 0.5;
+            semanticScore += (nameSimilarity + typeSimilarity) / 2;
+        }
+        return connectedDomains.length > 0 ? semanticScore / connectedDomains.length : 0.5;
+    }
+    /**
+   * Get domains connected to the specified domain
+   */ getConnectedDomains(domainId) {
+        const connectedIds = new Set();
+        for (const edge of this.graph.edges.values()){
+            if (edge.source === domainId) {
+                connectedIds.add(edge.target);
+            } else if (edge.target === domainId) {
+                connectedIds.add(edge.source);
+            }
+        }
+        return Array.from(connectedIds).map((id)=>this.graph.nodes.get(id)).filter(Boolean);
+    }
+    /**
+   * Calculate name similarity between two domain names
+   */ calculateNameSimilarity(name1, name2) {
+        const words1 = name1.toLowerCase().split(/[\s\-_]+/);
+        const words2 = name2.toLowerCase().split(/[\s\-_]+/);
+        const commonWords = words1.filter((w)=>words2.includes(w));
+        const totalWords = new Set([
+            ...words1,
+            ...words2
+        ]).size;
+        return totalWords > 0 ? commonWords.length / totalWords : 0;
+    }
+    // ===== Cross-Domain Dependency Analysis =====
+    /**
+   * Identify and analyze cross-domain dependencies
+   *
+   * @returns Comprehensive dependency analysis
+   */ async identifyCrossDomainDependencies() {
+        const dependencyGraph = new Map();
+        const circularDependencies = [];
+        const criticalPaths = [];
+        // Build dependency graph
+        for (const [nodeId1] of this.graph.nodes){
+            const dependencies = [];
+            for (const edge of this.graph.edges.values()){
+                if (edge.source === nodeId1 && edge.type === 'dependency') {
+                    dependencies.push(edge.target);
+                }
+            }
+            dependencyGraph.set(nodeId1, dependencies);
+        }
+        // Detect circular dependencies
+        const visited = new Set();
+        const recursionStack = new Set();
+        const detectCircularDFS = (nodeId1, path)=>{
+            visited.add(nodeId1);
+            recursionStack.add(nodeId1);
+            path.push(nodeId1);
+            const dependencies = dependencyGraph.get(nodeId1) || [];
+            for (const depId of dependencies){
+                if (!visited.has(depId)) {
+                    detectCircularDFS(depId, [
+                        ...path
+                    ]);
+                } else if (recursionStack.has(depId)) {
+                    // Found circular dependency
+                    const cycleStart = path.indexOf(depId);
+                    const cycle = path.slice(cycleStart);
+                    circularDependencies.push([
+                        ...cycle,
+                        depId
+                    ]);
+                }
+            }
+            recursionStack.delete(nodeId1);
+        };
+        for (const [nodeId1] of this.graph.nodes){
+            if (!visited.has(nodeId1)) {
+                detectCircularDFS(nodeId1, []);
+            }
+        }
+        // Identify critical paths
+        const calculateRisk = (path)=>{
+            let totalRisk = 0;
+            for(let i = 0; i < path.length - 1; i++){
+                const edgeId = `${path[i]}->${path[i + 1]}`;
+                const edge = this.graph.edges.get(edgeId);
+                if (edge) {
+                    // Risk based on reliability (inverted) and criticality
+                    const reliability = edge.metadata.reliability;
+                    const criticality = 1 - reliability;
+                    totalRisk += criticality;
+                }
+            }
+            return totalRisk / (path.length - 1);
+        };
+        const calculateImpact = (path)=>{
+            // Impact based on number of affected domains
+            const affectedDomains = new Set();
+            for (const nodeId1 of path){
+                // Find all domains that depend on nodes in this path
+                for (const [depId, deps] of dependencyGraph){
+                    if (deps.includes(nodeId1)) {
+                        affectedDomains.add(depId);
+                    }
+                }
+            }
+            return affectedDomains.size / this.graph.nodes.size;
+        };
+        // Find longest dependency chains as critical paths
+        const findLongestPaths = (nodeId1, visited, path)=>{
+            if (path.length > 3) {
+                // Consider paths longer than 3 as potentially critical
+                const risk = calculateRisk(path);
+                const impact = calculateImpact(path);
+                if (risk > 0.3 || impact > 0.2) {
+                    criticalPaths.push({
+                        path: [
+                            ...path
+                        ],
+                        risk,
+                        impact
+                    });
+                }
+            }
+            const dependencies = dependencyGraph.get(nodeId1) || [];
+            for (const depId of dependencies){
+                if (!visited.has(depId)) {
+                    visited.add(depId);
+                    findLongestPaths(depId, visited, [
+                        ...path,
+                        depId
+                    ]);
+                    visited.delete(depId);
+                }
+            }
+        };
+        for (const [nodeId1] of this.graph.nodes){
+            const visited = new Set([
+                nodeId1
+            ]);
+            findLongestPaths(nodeId1, visited, [
+                nodeId1
+            ]);
+        }
+        // Calculate metrics
+        const inDegrees = new Map();
+        const outDegrees = new Map();
+        for (const [nodeId1] of this.graph.nodes){
+            inDegrees.set(nodeId1, 0);
+            outDegrees.set(nodeId1, 0);
+        }
+        for (const deps of dependencyGraph.values()){
+            outDegrees.set(nodeId, deps.length);
+            for (const depId of deps){
+                inDegrees.set(depId, (inDegrees.get(depId) || 0) + 1);
+            }
+        }
+        const averageInDegree = Array.from(inDegrees.values()).reduce((sum, deg)=>sum + deg, 0) / this.graph.nodes.size;
+        const averageOutDegree = Array.from(outDegrees.values()).reduce((sum, deg)=>sum + deg, 0) / this.graph.nodes.size;
+        // Calculate maximum depth
+        const calculateMaxDepth = (nodeId1, visited)=>{
+            if (visited.has(nodeId1)) return 0;
+            visited.add(nodeId1);
+            const dependencies = dependencyGraph.get(nodeId1) || [];
+            if (dependencies.length === 0) return 1;
+            const depths = dependencies.map((depId)=>calculateMaxDepth(depId, new Set(visited)));
+            return 1 + Math.max(...depths, 0);
+        };
+        const depths = Array.from(this.graph.nodes.keys()).map((nodeId1)=>calculateMaxDepth(nodeId1, new Set()));
+        const maxDepth = Math.max(...depths, 0);
+        // Cyclomatic complexity (simplified)
+        const cyclomaticComplexity = this.graph.edges.size - this.graph.nodes.size + 2;
+        const analysis = {
+            graph: dependencyGraph,
+            circularDependencies,
+            criticalPaths: criticalPaths.sort((a, b)=>b.risk + b.impact - (a.risk + a.impact)).slice(0, 10),
+            metrics: {
+                averageInDegree,
+                averageOutDegree,
+                maxDepth,
+                cyclomaticComplexity
+            },
+            optimizations: await this.generateDependencyOptimizations(dependencyGraph, circularDependencies, criticalPaths)
+        };
+        this.emit('dependencies-analyzed', analysis);
+        return analysis;
+    }
+    // ===== Predictive Boundary Optimization =====
+    /**
+   * Provide predictive boundary optimization suggestions
+   *
+   * @returns Boundary optimization recommendations
+   */ async provideBoundaryOptimization() {
+        const proposals = [];
+        // Analyze current boundaries and identify optimization opportunities
+        const cohesionAnalysis = await this.calculateDomainCohesion();
+        const dependencyAnalysis = await this.identifyCrossDomainDependencies();
+        // Generate merge proposals for highly coupled domains
+        await this.generateMergeProposals(proposals, cohesionAnalysis, dependencyAnalysis);
+        // Generate split proposals for low-cohesion domains
+        await this.generateSplitProposals(proposals, cohesionAnalysis, dependencyAnalysis);
+        // Generate relocation proposals for misplaced functionality
+        await this.generateRelocationProposals(proposals, cohesionAnalysis, dependencyAnalysis);
+        // Generate abstraction proposals for common patterns
+        await this.generateAbstractionProposals(proposals, cohesionAnalysis, dependencyAnalysis);
+        // Calculate overall optimization score
+        const optimizationScore = this.calculateOptimizationScore(proposals);
+        // Determine priority based on current system health
+        const priority = this.determinePriority(cohesionAnalysis, dependencyAnalysis, optimizationScore);
+        const optimization = {
+            proposals: proposals.sort((a, b)=>b.confidence - a.confidence).slice(0, 20),
+            optimizationScore,
+            priority
+        };
+        this.emit('optimization-generated', optimization);
+        return optimization;
+    }
+    // ===== Training Methods =====
+    /**
+   * Train the neural network on domain relationship patterns
+   *
+   * @param trainingData Training dataset
+   * @param validationData Validation dataset
+   * @returns Training results
+   */ async train(trainingData, validationData) {
+        if (this.isTraining) {
+            throw new Error('Training already in progress');
+        }
+        this.isTraining = true;
+        this.emit('training-started', {
+            trainingData,
+            validationData
+        });
+        try {
+            const trainingHistory = [];
+            let bestAccuracy = 0;
+            let bestWeights = new Map(this.weights);
+            let bestBiases = new Map(this.biases);
+            let patienceCounter = 0;
+            // Training loop
+            for(let epoch = 0; epoch < this.trainingConfig.epochs; epoch++){
+                this.trainingState.epoch = epoch;
+                // Forward pass and backpropagation
+                const { loss, accuracy } = await this.trainEpoch(trainingData);
+                // Validation
+                let validationLoss;
+                let validationAccuracy;
+                if (validationData) {
+                    const validationResults = await this.validateModel(validationData);
+                    validationLoss = validationResults.loss;
+                    validationAccuracy = validationResults.accuracy;
+                }
+                // Update training state
+                this.trainingState.loss = loss;
+                this.trainingState.accuracy = accuracy;
+                this.trainingState.validationLoss = validationLoss;
+                this.trainingState.validationAccuracy = validationAccuracy;
+                const epochResult = {
+                    epoch,
+                    loss,
+                    accuracy,
+                    validationLoss,
+                    validationAccuracy
+                };
+                trainingHistory.push(epochResult);
+                // Check for improvement
+                const currentAccuracy = validationAccuracy || accuracy;
+                if (currentAccuracy > bestAccuracy + this.trainingConfig.earlyStoping.minDelta) {
+                    bestAccuracy = currentAccuracy;
+                    bestWeights = new Map(this.weights);
+                    bestBiases = new Map(this.biases);
+                    patienceCounter = 0;
+                } else {
+                    patienceCounter++;
+                }
+                // Early stopping
+                if (this.trainingConfig.earlyStoping.enabled && patienceCounter >= this.trainingConfig.earlyStoping.patience) {
+                    console.log(`Early stopping at epoch ${epoch}`);
+                    break;
+                }
+                // Learning rate scheduling
+                if (epoch > 0 && epoch % 20 === 0) {
+                    this.trainingConfig.learningRate *= 0.9;
+                    this.trainingState.learningRate = this.trainingConfig.learningRate;
+                }
+                this.emit('epoch-completed', epochResult);
+            }
+            // Restore best model
+            this.weights = bestWeights;
+            this.biases = bestBiases;
+            // Update graph metadata
+            this.graph.metadata.lastTraining = Date.now();
+            const result = {
+                finalAccuracy: bestAccuracy,
+                trainingHistory,
+                bestModel: {
+                    weights: bestWeights,
+                    biases: bestBiases
+                }
+            };
+            this.emit('training-completed', result);
+            return result;
+        } finally{
+            this.isTraining = false;
+        }
+    }
+    /**
+   * Train a single epoch
+   */ async trainEpoch(trainingData) {
+        const batchSize = this.trainingConfig.batchSize;
+        let totalLoss = 0;
+        let correct = 0;
+        let total = 0;
+        // Shuffle training data
+        const indices = Array.from({
+            length: trainingData.inputs.length
+        }, (_, i)=>i);
+        this.shuffleArray(indices);
+        // Process batches
+        for(let i = 0; i < indices.length; i += batchSize){
+            const batchIndices = indices.slice(i, i + batchSize);
+            const batchInputs = batchIndices.map((idx)=>trainingData.inputs[idx]);
+            const batchTargets = batchIndices.map((idx)=>trainingData.outputs[idx]);
+            const { loss, accuracy } = await this.processBatch(batchInputs, batchTargets);
+            totalLoss += loss;
+            correct += accuracy * batchIndices.length;
+            total += batchIndices.length;
+        }
+        return {
+            loss: totalLoss / Math.ceil(indices.length / batchSize),
+            accuracy: correct / total
+        };
+    }
+    /**
+   * Process a single batch
+   */ async processBatch(inputs, targets) {
+        // Forward pass
+        const predictions = inputs.map((input)=>this.forwardPass(input));
+        // Calculate loss
+        const loss = this.calculateLoss(predictions, targets);
+        // Calculate accuracy
+        const accuracy = this.calculateAccuracy(predictions, targets);
+        // Backward pass
+        await this.backwardPass(inputs, predictions, targets);
+        return {
+            loss,
+            accuracy
+        };
+    }
+    /**
+   * Forward pass through the network
+   */ forwardPass(input) {
+        let activation = this.preprocessInput(input);
+        // Process through each layer
+        for(let i = 0; i < this.layers.length; i++){
+            const layerConfig = this.layers[i];
+            const weights = this.weights.get(`layer_${i}`) || [];
+            const biases = this.biases.get(`layer_${i}`) || [];
+            activation = this.processLayer(activation, weights, biases, layerConfig);
+        }
+        return activation;
+    }
+    /**
+   * Backward pass for gradient calculation and weight updates
+   */ async backwardPass(inputs, predictions, targets) {
+        // Calculate output gradients
+        const outputGradients = this.calculateOutputGradients(predictions, targets);
+        // Backpropagate through layers
+        let gradients = outputGradients;
+        for(let i = this.layers.length - 1; i >= 0; i--){
+            const layerConfig = this.layers[i];
+            const weights = this.weights.get(`layer_${i}`) || [];
+            const biases = this.biases.get(`layer_${i}`) || [];
+            const { weightGradients, biasGradients, inputGradients } = this.calculateLayerGradients(gradients, weights, biases, layerConfig);
+            // Update weights and biases
+            this.updateWeights(`layer_${i}`, weights, weightGradients);
+            this.updateBiases(`layer_${i}`, biases, biasGradients);
+            gradients = inputGradients;
+        }
+    }
+    // ===== Inference Methods =====
+    /**
+   * Make predictions using the trained model
+   *
+   * @param input Input data for prediction
+   * @returns Prediction results
+   */ async predict(input) {
+        if (this.isTraining) {
+            throw new Error('Cannot make predictions during training');
+        }
+        const output = this.forwardPass(input);
+        const confidence = this.calculatePredictionConfidence(output);
+        // Generate alternatives using dropout or ensemble
+        const alternatives = await this.generateAlternativePredictions(input, 5);
+        const prediction = {
+            input,
+            output,
+            confidence,
+            alternatives
+        };
+        this.emit('prediction-made', prediction);
+        return prediction;
+    }
+    /**
+   * Analyze domain relationships and suggest optimizations
+   *
+   * @param domains Domain configuration to analyze
+   * @returns Analysis results with optimization suggestions
+   */ async analyzeDomains(domains) {
+        // Update internal graph
+        this.graph = {
+            ...domains
+        };
+        // Perform comprehensive analysis
+        const [cohesion, dependencies, optimization] = await Promise.all([
+            this.calculateDomainCohesion(),
+            this.identifyCrossDomainDependencies(),
+            this.provideBoundaryOptimization()
+        ]);
+        // Generate high-level recommendations
+        const recommendations = this.generateHighLevelRecommendations(cohesion, dependencies, optimization);
+        const analysis = {
+            cohesion,
+            dependencies,
+            optimization,
+            recommendations
+        };
+        this.emit('domains-analyzed', analysis);
+        return analysis;
+    }
+    // ===== Helper Methods =====
+    createDefaultPatternStore() {
+        const patterns = new Map();
+        return {
+            add: (pattern)=>patterns.set(pattern.id, pattern),
+            get: (id)=>patterns.get(id),
+            findSimilar: (pattern, threshold)=>{
+                return Array.from(patterns.values()).filter((p)=>this.calculatePatternSimilarity(p, pattern) >= threshold);
+            },
+            getByType: (type)=>{
+                return Array.from(patterns.values()).filter((p)=>p.type === type);
+            },
+            prune: (maxAge)=>{
+                const cutoff = Date.now() - maxAge;
+                for (const [id, pattern] of patterns){
+                    if (Date.now() - maxAge > cutoff) {
+                        patterns.delete(id);
+                    }
+                }
+            },
+            export: ()=>Array.from(patterns.values()),
+            import: (importedPatterns)=>{
+                for (const pattern of importedPatterns){
+                    patterns.set(pattern.id, pattern);
+                }
+            }
+        };
+    }
+    initializeNodeEmbedding(nodeId1) {
+        return Array.from({
+            length: 32
+        }, ()=>(Math.random() - 0.5) * 0.1);
+    }
+    initializeWeights() {
+        for(let i = 0; i < this.layers.length; i++){
+            const layer = this.layers[i];
+            const inputDim = i === 0 ? 64 : this.layers[i - 1].outputDim;
+            const outputDim = layer.outputDim;
+            // Xavier/Glorot initialization
+            const limit = Math.sqrt(6 / (inputDim + outputDim));
+            const weights = Array.from({
+                length: inputDim * outputDim
+            }, ()=>(Math.random() - 0.5) * 2 * limit);
+            const biases = Array.from({
+                length: outputDim
+            }, ()=>0);
+            this.weights.set(`layer_${i}`, weights);
+            this.biases.set(`layer_${i}`, biases);
+        }
+    }
+    shuffleArray(array) {
+        for(let i = array.length - 1; i > 0; i--){
+            const j = Math.floor(Math.random() * (i + 1));
+            [array[i], array[j]] = [
+                array[j],
+                array[i]
+            ];
+        }
+    }
+    preprocessInput(input) {
+        // Convert input to numerical features
+        if (typeof input === 'object' && input.features) {
+            return input.features;
+        }
+        // Default preprocessing
+        return Array.from({
+            length: 64
+        }, ()=>0);
+    }
+    processLayer(input, weights, biases, config) {
+        // Matrix multiplication: input * weights + biases
+        const output = new Array(config.outputDim).fill(0);
+        for(let i = 0; i < config.outputDim; i++){
+            let sum = biases[i] || 0;
+            for(let j = 0; j < input.length; j++){
+                const weightIndex = j * config.outputDim + i;
+                sum += input[j] * (weights[weightIndex] || 0);
+            }
+            output[i] = this.applyActivation(sum, config.activation);
+        }
+        // Apply dropout during training
+        if (this.isTraining && config.dropout > 0) {
+            for(let i = 0; i < output.length; i++){
+                if (Math.random() < config.dropout) {
+                    output[i] = 0;
+                }
+            }
+        }
+        return output;
+    }
+    applyActivation(x, activation) {
+        switch(activation){
+            case 'relu':
+                return Math.max(0, x);
+            case 'tanh':
+                return Math.tanh(x);
+            case 'sigmoid':
+                return 1 / (1 + Math.exp(-x));
+            case 'gelu':
+                return 0.5 * x * (1 + Math.tanh(Math.sqrt(2 / Math.PI) * (x + 0.044715 * Math.pow(x, 3))));
+            case 'swish':
+                return x / (1 + Math.exp(-x));
+            default:
+                return x;
+        }
+    }
+    calculateLoss(predictions, targets) {
+        let totalLoss = 0;
+        for(let i = 0; i < predictions.length; i++){
+            const pred = predictions[i];
+            const target = Array.isArray(targets[i]) ? targets[i] : [
+                targets[i]
+            ];
+            // Mean squared error
+            for(let j = 0; j < Math.min(pred.length, target.length); j++){
+                const diff = pred[j] - target[j];
+                totalLoss += diff * diff;
+            }
+        }
+        return totalLoss / predictions.length;
+    }
+    calculateAccuracy(predictions, targets) {
+        let correct = 0;
+        for(let i = 0; i < predictions.length; i++){
+            const pred = predictions[i];
+            const target = Array.isArray(targets[i]) ? targets[i] : [
+                targets[i]
+            ];
+            // Simple threshold-based accuracy for regression
+            let sampleCorrect = true;
+            for(let j = 0; j < Math.min(pred.length, target.length); j++){
+                if (Math.abs(pred[j] - target[j]) > 0.1) {
+                    sampleCorrect = false;
+                    break;
+                }
+            }
+            if (sampleCorrect) correct++;
+        }
+        return correct / predictions.length;
+    }
+    calculateOutputGradients(predictions, targets) {
+        const gradients = [];
+        for(let i = 0; i < predictions.length; i++){
+            const pred = predictions[i];
+            const target = Array.isArray(targets[i]) ? targets[i] : [
+                targets[i]
+            ];
+            const sampleGradients = [];
+            for(let j = 0; j < pred.length; j++){
+                const targetVal = j < target.length ? target[j] : 0;
+                sampleGradients.push(2 * (pred[j] - targetVal));
+            }
+            gradients.push(sampleGradients);
+        }
+        return gradients;
+    }
+    calculateLayerGradients(outputGradients, weights, biases, config) {
+        // Simplified gradient calculation
+        const weightGradients = new Array(weights.length).fill(0);
+        const biasGradients = new Array(biases.length).fill(0);
+        const inputGradients = [];
+        // This is a simplified implementation
+        // In practice, you'd need proper matrix operations and chain rule application
+        for(let i = 0; i < outputGradients.length; i++){
+            const sampleInputGradients = new Array(config.inputDim).fill(0);
+            for(let j = 0; j < outputGradients[i].length; j++){
+                const grad = outputGradients[i][j];
+                // Bias gradients
+                biasGradients[j] += grad;
+            // Weight and input gradients would require activation functions and inputs
+            // This is simplified for demonstration
+            }
+            inputGradients.push(sampleInputGradients);
+        }
+        return {
+            weightGradients,
+            biasGradients,
+            inputGradients
+        };
+    }
+    updateWeights(layerId, weights, gradients) {
+        const lr = this.trainingState.learningRate;
+        const l2 = this.trainingConfig.regularization.l2;
+        for(let i = 0; i < weights.length && i < gradients.length; i++){
+            weights[i] -= lr * (gradients[i] + l2 * weights[i]);
+        }
+        this.weights.set(layerId, weights);
+    }
+    updateBiases(layerId, biases, gradients) {
+        const lr = this.trainingState.learningRate;
+        for(let i = 0; i < biases.length && i < gradients.length; i++){
+            biases[i] -= lr * gradients[i];
+        }
+        this.biases.set(layerId, biases);
+    }
+    async validateModel(validationData) {
+        const predictions = validationData.inputs.map((input)=>this.forwardPass(input));
+        const loss = this.calculateLoss(predictions, validationData.outputs);
+        const accuracy = this.calculateAccuracy(predictions, validationData.outputs);
+        return {
+            loss,
+            accuracy
+        };
+    }
+    calculatePredictionConfidence(output) {
+        // Calculate confidence based on output certainty
+        const maxVal = Math.max(...output);
+        const minVal = Math.min(...output);
+        const range = maxVal - minVal;
+        // Higher range indicates more confident prediction
+        return Math.min(range, 1);
+    }
+    async generateAlternativePredictions(input, count) {
+        const alternatives = [];
+        // Generate alternatives using noise injection
+        for(let i = 0; i < count; i++){
+            const noisyInput = this.addNoiseToInput(input, 0.1);
+            const output = this.forwardPass(noisyInput);
+            const confidence = this.calculatePredictionConfidence(output);
+            alternatives.push({
+                output,
+                confidence
+            });
+        }
+        return alternatives.sort((a, b)=>b.confidence - a.confidence);
+    }
+    addNoiseToInput(input, noiseLevel) {
+        if (typeof input === 'object' && input.features) {
+            const noisyFeatures = input.features.map((f)=>f + (Math.random() - 0.5) * noiseLevel);
+            return {
+                ...input,
+                features: noisyFeatures
+            };
+        }
+        return input;
+    }
+    calculatePatternSimilarity(p1, p2) {
+        // Simplified similarity calculation
+        let similarity = 0;
+        let factors = 0;
+        if (p1.type === p2.type) {
+            similarity += 0.3;
+        }
+        factors++;
+        if (p2.confidence !== undefined) {
+            similarity += 1 - Math.abs(p1.confidence - p2.confidence);
+            factors++;
+        }
+        return similarity / factors;
+    }
+    // Additional helper methods would be implemented here for:
+    // - generateCohesionSuggestions
+    // - identifyWeaknessReason
+    // - generateCohesionRecommendations
+    // - generateDependencyOptimizations
+    // - generateMergeProposals
+    // - generateSplitProposals
+    // - generateRelocationProposals
+    // - generateAbstractionProposals
+    // - calculateOptimizationScore
+    // - determinePriority
+    // - generateHighLevelRecommendations
+    /**
+   * Get current model statistics
+   */ getModelStats() {
+        return {
+            graphSize: {
+                nodes: this.graph.nodes.size,
+                edges: this.graph.edges.size
+            },
+            trainingState: {
+                ...this.trainingState
+            },
+            modelVersion: this.modelVersion,
+            lastTraining: this.graph.metadata.lastTraining,
+            cohesionScore: this.graph.metadata.cohesionScore
+        };
+    }
+    /**
+   * Export model state for persistence
+   */ exportModel() {
+        return {
+            graph: this.graph,
+            weights: Object.fromEntries(this.weights),
+            biases: Object.fromEntries(this.biases),
+            trainingState: this.trainingState,
+            config: this.trainingConfig
+        };
+    }
+    /**
+   * Import model state from persistence
+   */ importModel(modelData) {
+        this.graph = modelData.graph;
+        this.weights = new Map(Object.entries(modelData.weights));
+        this.biases = new Map(Object.entries(modelData.biases));
+        this.trainingState = modelData.trainingState;
+        this.trainingConfig = {
+            ...this.trainingConfig,
+            ...modelData.config
+        };
+        this.emit('model-imported', modelData);
+    }
+    // Stub implementations for remaining methods
+    generateCohesionSuggestions(domainId, factors) {
+        return [
+            'Improve structural cohesion',
+            'Enhance functional alignment'
+        ];
+    }
+    identifyWeaknessReason(structural, functional, behavioral, semantic) {
+        const lowest = Math.min(structural, functional, behavioral, semantic);
+        if (lowest === structural) return 'Poor structural cohesion';
+        if (lowest === functional) return 'Low functional alignment';
+        if (lowest === behavioral) return 'Inconsistent behavior patterns';
+        return 'Weak semantic relationships';
+    }
+    async generateCohesionRecommendations(domainScores, weakPoints) {
+        return [
+            {
+                type: 'restructure',
+                target: [
+                    'domain1',
+                    'domain2'
+                ],
+                impact: 0.3,
+                confidence: 0.8
+            }
+        ];
+    }
+    async generateDependencyOptimizations(dependencyGraph, circularDependencies, criticalPaths) {
+        return [
+            {
+                type: 'break-cycle',
+                affected: [
+                    'domain1',
+                    'domain2'
+                ],
+                benefit: 0.5,
+                effort: 0.3
+            }
+        ];
+    }
+    async generateMergeProposals(proposals, cohesionAnalysis, dependencyAnalysis) {
+    // Implementation would analyze highly coupled domains for merge opportunities
+    }
+    async generateSplitProposals(proposals, cohesionAnalysis, dependencyAnalysis) {
+    // Implementation would identify large, low-cohesion domains for splitting
+    }
+    async generateRelocationProposals(proposals, cohesionAnalysis, dependencyAnalysis) {
+    // Implementation would suggest moving functionality between domains
+    }
+    async generateAbstractionProposals(proposals, cohesionAnalysis, dependencyAnalysis) {
+    // Implementation would identify common patterns for abstraction
+    }
+    calculateOptimizationScore(proposals) {
+        return proposals.reduce((score, p)=>score + p.confidence * 0.1, 0);
+    }
+    determinePriority(cohesionAnalysis, dependencyAnalysis, optimizationScore) {
+        if (cohesionAnalysis.overallScore < 0.3) return 'critical';
+        if (optimizationScore > 0.7) return 'high';
+        if (optimizationScore > 0.4) return 'medium';
+        return 'low';
+    }
+    generateHighLevelRecommendations(cohesion, dependencies, optimization) {
+        const recommendations = [];
+        if (cohesion.overallScore < 0.6) {
+            recommendations.push('Consider domain restructuring to improve cohesion');
+        }
+        if (dependencies.circularDependencies.length > 0) {
+            recommendations.push('Address circular dependencies to improve maintainability');
+        }
+        if (optimization.priority === 'high' || optimization.priority === 'critical') {
+            recommendations.push('Implement boundary optimizations to improve system architecture');
+        }
+        return recommendations;
+    }
+}
+
+//# sourceMappingURL=NeuralDomainMapper.js.map