causantic 0.2.0

package/dist/storage/embedding-cache.d.ts

@@ -0,0 +1,51 @@
+/**
+ * Embedding cache for content-hash based caching.
+ * Skips re-embedding unchanged content by caching embeddings keyed by content hash.
+ */
+/**
+ * Compute a SHA-256 hash of content for cache lookup.
+ */
+export declare function computeContentHash(content: string): string;
+/**
+ * Get a cached embedding for a single content hash.
+ * Returns null if not found. Updates hit count on cache hit.
+ */
+export declare function getCachedEmbedding(contentHash: string, modelId: string): number[] | null;
+/**
+ * Get cached embeddings for multiple content hashes in a single query.
+ * Returns a Map of contentHash -> embedding for found entries.
+ */
+export declare function getCachedEmbeddingsBatch(contentHashes: string[], modelId: string): Map<string, number[]>;
+/**
+ * Cache a single embedding.
+ */
+export declare function cacheEmbedding(contentHash: string, modelId: string, embedding: number[]): void;
+/**
+ * Cache multiple embeddings in a single transaction.
+ */
+export declare function cacheEmbeddingsBatch(items: Array<{
+    contentHash: string;
+    embedding: number[];
+}>, modelId: string): void;
+/**
+ * Evict oldest cache entries if cache exceeds maximum size.
+ * Uses LRU-like eviction based on created_at timestamp.
+ */
+export declare function evictOldestIfNeeded(): void;
+/**
+ * Get cache statistics.
+ */
+export declare function getCacheStats(): {
+    entryCount: number;
+    totalHits: number;
+    avgHitCount: number;
+};
+/**
+ * Clear the entire cache.
+ */
+export declare function clearCache(): void;
+/**
+ * Clear cache entries for a specific model.
+ */
+export declare function clearCacheForModel(modelId: string): void;
+//# sourceMappingURL=embedding-cache.d.ts.map

package/dist/storage/embedding-cache.d.ts.map

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package/dist/storage/embedding-cache.js

@@ -0,0 +1,155 @@
+/**
+ * Embedding cache for content-hash based caching.
+ * Skips re-embedding unchanged content by caching embeddings keyed by content hash.
+ */
+import { createHash } from 'crypto';
+import { getDb } from './db.js';
+import { serializeEmbedding, deserializeEmbedding } from '../utils/embedding-utils.js';
+/** Maximum cache entries before LRU eviction (~400MB for 1024-dim embeddings) */
+const MAX_CACHE_ENTRIES = 100_000;
+/** Extra entries to evict to avoid frequent evictions */
+const EVICTION_BUFFER = 1_000;
+/**
+ * Compute a SHA-256 hash of content for cache lookup.
+ */
+export function computeContentHash(content) {
+    return createHash('sha256').update(content).digest('hex');
+}
+/**
+ * Get a cached embedding for a single content hash.
+ * Returns null if not found. Updates hit count on cache hit.
+ */
+export function getCachedEmbedding(contentHash, modelId) {
+    const db = getDb();
+    const row = db
+        .prepare(`
+    SELECT embedding FROM embedding_cache
+    WHERE content_hash = ? AND model_id = ?
+  `)
+        .get(contentHash, modelId);
+    if (!row)
+        return null;
+    // Update hit count (fire and forget)
+    db.prepare(`
+    UPDATE embedding_cache SET hit_count = hit_count + 1
+    WHERE content_hash = ? AND model_id = ?
+  `).run(contentHash, modelId);
+    // Deserialize from Buffer to number[]
+    return deserializeEmbedding(row.embedding);
+}
+/**
+ * Get cached embeddings for multiple content hashes in a single query.
+ * Returns a Map of contentHash -> embedding for found entries.
+ */
+export function getCachedEmbeddingsBatch(contentHashes, modelId) {
+    const cache = new Map();
+    if (contentHashes.length === 0)
+        return cache;
+    const db = getDb();
+    const placeholders = contentHashes.map(() => '?').join(',');
+    const rows = db
+        .prepare(`
+    SELECT content_hash, embedding FROM embedding_cache
+    WHERE content_hash IN (${placeholders}) AND model_id = ?
+  `)
+        .all(...contentHashes, modelId);
+    for (const row of rows) {
+        cache.set(row.content_hash, deserializeEmbedding(row.embedding));
+    }
+    // Update hit counts for found entries
+    if (rows.length > 0) {
+        const foundHashes = rows.map((r) => r.content_hash);
+        const updatePlaceholders = foundHashes.map(() => '?').join(',');
+        db.prepare(`
+      UPDATE embedding_cache SET hit_count = hit_count + 1
+      WHERE content_hash IN (${updatePlaceholders}) AND model_id = ?
+    `).run(...foundHashes, modelId);
+    }
+    return cache;
+}
+/**
+ * Cache a single embedding.
+ */
+export function cacheEmbedding(contentHash, modelId, embedding) {
+    const db = getDb();
+    const blob = serializeEmbedding(embedding);
+    db.prepare(`
+    INSERT OR REPLACE INTO embedding_cache
+    (content_hash, model_id, embedding, created_at, hit_count)
+    VALUES (?, ?, ?, CURRENT_TIMESTAMP, 0)
+  `).run(contentHash, modelId, blob);
+}
+/**
+ * Cache multiple embeddings in a single transaction.
+ */
+export function cacheEmbeddingsBatch(items, modelId) {
+    if (items.length === 0)
+        return;
+    const db = getDb();
+    const stmt = db.prepare(`
+    INSERT OR REPLACE INTO embedding_cache
+    (content_hash, model_id, embedding, created_at, hit_count)
+    VALUES (?, ?, ?, CURRENT_TIMESTAMP, 0)
+  `);
+    const insertMany = db.transaction((items) => {
+        for (const item of items) {
+            const blob = serializeEmbedding(item.embedding);
+            stmt.run(item.contentHash, modelId, blob);
+        }
+    });
+    insertMany(items);
+    // Check if eviction is needed after batch insert
+    evictOldestIfNeeded();
+}
+/**
+ * Evict oldest cache entries if cache exceeds maximum size.
+ * Uses LRU-like eviction based on created_at timestamp.
+ */
+export function evictOldestIfNeeded() {
+    const db = getDb();
+    const countResult = db
+        .prepare('SELECT COUNT(*) as count FROM embedding_cache')
+        .get();
+    if (countResult.count > MAX_CACHE_ENTRIES) {
+        const toEvict = countResult.count - MAX_CACHE_ENTRIES + EVICTION_BUFFER;
+        db.prepare(`
+      DELETE FROM embedding_cache WHERE rowid IN (
+        SELECT rowid FROM embedding_cache
+        ORDER BY created_at ASC
+        LIMIT ?
+      )
+    `).run(toEvict);
+    }
+}
+/**
+ * Get cache statistics.
+ */
+export function getCacheStats() {
+    const db = getDb();
+    const result = db
+        .prepare(`
+    SELECT COUNT(*) as count, COALESCE(SUM(hit_count), 0) as total_hits, COALESCE(AVG(hit_count), 0) as avg_hits
+    FROM embedding_cache
+  `)
+        .get();
+    return {
+        entryCount: result.count,
+        totalHits: result.total_hits,
+        avgHitCount: result.avg_hits,
+    };
+}
+/**
+ * Clear the entire cache.
+ */
+export function clearCache() {
+    const db = getDb();
+    db.prepare('DELETE FROM embedding_cache').run();
+}
+/**
+ * Clear cache entries for a specific model.
+ */
+export function clearCacheForModel(modelId) {
+    const db = getDb();
+    db.prepare('DELETE FROM embedding_cache WHERE model_id = ?').run(modelId);
+}
+//# sourceMappingURL=embedding-cache.js.map

package/dist/storage/embedding-cache.js.map

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package/dist/storage/encryption.d.ts

@@ -0,0 +1,55 @@
+/**
+ * Encryption utilities for Causantic.
+ *
+ * Uses AES-256-GCM for authenticated encryption with Argon2id for key derivation.
+ */
+/** Encrypted data format */
+export interface EncryptedData {
+    /** Salt for key derivation */
+    salt: Buffer;
+    /** Nonce for AES-GCM */
+    nonce: Buffer;
+    /** Authentication tag */
+    authTag: Buffer;
+    /** Encrypted content */
+    ciphertext: Buffer;
+}
+/**
+ * Derive an encryption key from a password using scrypt.
+ * Using scrypt as it's available in Node.js crypto module.
+ * For production, consider Argon2id.
+ */
+export declare function deriveKey(password: string, salt: Buffer): Buffer;
+/**
+ * Encrypt data with AES-256-GCM.
+ */
+export declare function encrypt(plaintext: Buffer, password: string): EncryptedData;
+/**
+ * Decrypt data with AES-256-GCM.
+ */
+export declare function decrypt(encrypted: EncryptedData, password: string): Buffer;
+/**
+ * Encrypt a string and return base64-encoded result.
+ */
+export declare function encryptString(plaintext: string, password: string): string;
+/**
+ * Decrypt a base64-encoded string.
+ */
+export declare function decryptString(encryptedBase64: string, password: string): string;
+/**
+ * Serialize encrypted data to a buffer.
+ */
+export declare function serializeEncrypted(encrypted: EncryptedData): Buffer;
+/**
+ * Deserialize encrypted data from a buffer.
+ */
+export declare function deserializeEncrypted(buffer: Buffer): EncryptedData;
+/**
+ * Generate a random encryption key (for testing or key management).
+ */
+export declare function generateKey(): Buffer;
+/**
+ * Generate a random password-like string.
+ */
+export declare function generatePassword(length?: number): string;
+//# sourceMappingURL=encryption.d.ts.map

package/dist/storage/encryption.d.ts.map

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package/dist/storage/encryption.js

@@ -0,0 +1,130 @@
+/**
+ * Encryption utilities for Causantic.
+ *
+ * Uses AES-256-GCM for authenticated encryption with Argon2id for key derivation.
+ */
+import { createCipheriv, createDecipheriv, randomBytes, scryptSync, } from 'node:crypto';
+/** Encryption algorithm */
+const ALGORITHM = 'aes-256-gcm';
+/** Key length for AES-256 */
+const KEY_LENGTH = 32;
+/** Salt length for key derivation */
+const SALT_LENGTH = 16;
+/** Nonce length for AES-GCM */
+const NONCE_LENGTH = 12;
+/** Auth tag length for AES-GCM */
+const AUTH_TAG_LENGTH = 16;
+/**
+ * Derive an encryption key from a password using scrypt.
+ * Using scrypt as it's available in Node.js crypto module.
+ * For production, consider Argon2id.
+ */
+export function deriveKey(password, salt) {
+    return scryptSync(password, salt, KEY_LENGTH, {
+        N: 16384, // CPU/memory cost
+        r: 8, // Block size
+        p: 1, // Parallelization
+    });
+}
+/**
+ * Encrypt data with AES-256-GCM.
+ */
+export function encrypt(plaintext, password) {
+    const salt = randomBytes(SALT_LENGTH);
+    const nonce = randomBytes(NONCE_LENGTH);
+    const key = deriveKey(password, salt);
+    const cipher = createCipheriv(ALGORITHM, key, nonce);
+    const ciphertext = Buffer.concat([
+        cipher.update(plaintext),
+        cipher.final(),
+    ]);
+    const authTag = cipher.getAuthTag();
+    return { salt, nonce, authTag, ciphertext };
+}
+/**
+ * Decrypt data with AES-256-GCM.
+ */
+export function decrypt(encrypted, password) {
+    const key = deriveKey(password, encrypted.salt);
+    const decipher = createDecipheriv(ALGORITHM, key, encrypted.nonce);
+    decipher.setAuthTag(encrypted.authTag);
+    return Buffer.concat([
+        decipher.update(encrypted.ciphertext),
+        decipher.final(),
+    ]);
+}
+/**
+ * Encrypt a string and return base64-encoded result.
+ */
+export function encryptString(plaintext, password) {
+    const encrypted = encrypt(Buffer.from(plaintext, 'utf-8'), password);
+    // Combine all parts into a single buffer
+    const combined = Buffer.concat([
+        encrypted.salt,
+        encrypted.nonce,
+        encrypted.authTag,
+        encrypted.ciphertext,
+    ]);
+    return combined.toString('base64');
+}
+/**
+ * Decrypt a base64-encoded string.
+ */
+export function decryptString(encryptedBase64, password) {
+    const combined = Buffer.from(encryptedBase64, 'base64');
+    // Extract parts
+    let offset = 0;
+    const salt = combined.subarray(offset, offset + SALT_LENGTH);
+    offset += SALT_LENGTH;
+    const nonce = combined.subarray(offset, offset + NONCE_LENGTH);
+    offset += NONCE_LENGTH;
+    const authTag = combined.subarray(offset, offset + AUTH_TAG_LENGTH);
+    offset += AUTH_TAG_LENGTH;
+    const ciphertext = combined.subarray(offset);
+    const decrypted = decrypt({ salt, nonce, authTag, ciphertext }, password);
+    return decrypted.toString('utf-8');
+}
+/**
+ * Serialize encrypted data to a buffer.
+ */
+export function serializeEncrypted(encrypted) {
+    return Buffer.concat([
+        encrypted.salt,
+        encrypted.nonce,
+        encrypted.authTag,
+        encrypted.ciphertext,
+    ]);
+}
+/**
+ * Deserialize encrypted data from a buffer.
+ */
+export function deserializeEncrypted(buffer) {
+    let offset = 0;
+    const salt = buffer.subarray(offset, offset + SALT_LENGTH);
+    offset += SALT_LENGTH;
+    const nonce = buffer.subarray(offset, offset + NONCE_LENGTH);
+    offset += NONCE_LENGTH;
+    const authTag = buffer.subarray(offset, offset + AUTH_TAG_LENGTH);
+    offset += AUTH_TAG_LENGTH;
+    const ciphertext = buffer.subarray(offset);
+    return { salt, nonce, authTag, ciphertext };
+}
+/**
+ * Generate a random encryption key (for testing or key management).
+ */
+export function generateKey() {
+    return randomBytes(KEY_LENGTH);
+}
+/**
+ * Generate a random password-like string.
+ */
+export function generatePassword(length = 32) {
+    const chars = 'ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789!@#$%^&*';
+    const bytes = randomBytes(length);
+    let password = '';
+    for (let i = 0; i < length; i++) {
+        password += chars[bytes[i] % chars.length];
+    }
+    return password;
+}
+//# sourceMappingURL=encryption.js.map

package/dist/storage/encryption.js.map

@@ -0,0 +1 @@
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package/dist/storage/index.d.ts

@@ -0,0 +1,15 @@
+/**
+ * Storage layer exports.
+ */
+export { getDb, closeDb, clearAllData, getDbStats, generateId, getSchemaVersion } from './db.js';
+export type { EdgeType, ReferenceType, StoredChunk, ChunkInput, StoredEdge, EdgeInput, WeightedEdge, StoredCluster, ClusterInput, ChunkClusterAssignment, WeightedChunk, TraversalResult, VectorSearchResult, } from './types.js';
+export { insertChunk, insertChunks, getChunkById, getChunksByIds, getChunksBySession, getChunksBySessionSlug, getAllChunks, getChunksByCluster, isSessionIngested, deleteChunk, deleteChunks, getSessionIds, getChunkCount, } from './chunk-store.js';
+export { createEdge, createEdges, getEdgeById, getOutgoingEdges, getIncomingEdges, getWeightedEdges, hasAnyEdges, deleteEdge, deleteEdges, deleteEdgesForChunk, getEdgeCount, getAllEdges, } from './edge-store.js';
+export { upsertCluster, getClusterById, getAllClusters, getStaleClusters, assignChunkToCluster, assignChunksToClusters, getChunkClusterAssignments, getClusterChunkIds, removeChunkAssignments, clearClusterAssignments, deleteCluster, clearAllClusters, getClusterCount, computeMembershipHash, } from './cluster-store.js';
+export { vectorStore } from './vector-store.js';
+export { KeywordStore } from './keyword-store.js';
+export type { KeywordSearchResult } from './keyword-store.js';
+export { calculateDecayWeight, getDeathTime } from './decay.js';
+export { pruner, initStartupPrune } from './pruner.js';
+export type { PruneResult, FullPruneProgress } from './pruner.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/storage/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/storage/index.js

@@ -0,0 +1,20 @@
+/**
+ * Storage layer exports.
+ */
+// Database
+export { getDb, closeDb, clearAllData, getDbStats, generateId, getSchemaVersion } from './db.js';
+// Chunk store
+export { insertChunk, insertChunks, getChunkById, getChunksByIds, getChunksBySession, getChunksBySessionSlug, getAllChunks, getChunksByCluster, isSessionIngested, deleteChunk, deleteChunks, getSessionIds, getChunkCount, } from './chunk-store.js';
+// Edge store
+export { createEdge, createEdges, getEdgeById, getOutgoingEdges, getIncomingEdges, getWeightedEdges, hasAnyEdges, deleteEdge, deleteEdges, deleteEdgesForChunk, getEdgeCount, getAllEdges, } from './edge-store.js';
+// Cluster store
+export { upsertCluster, getClusterById, getAllClusters, getStaleClusters, assignChunkToCluster, assignChunksToClusters, getChunkClusterAssignments, getClusterChunkIds, removeChunkAssignments, clearClusterAssignments, deleteCluster, clearAllClusters, getClusterCount, computeMembershipHash, } from './cluster-store.js';
+// Vector store
+export { vectorStore } from './vector-store.js';
+// Keyword store
+export { KeywordStore } from './keyword-store.js';
+// Decay calculation
+export { calculateDecayWeight, getDeathTime } from './decay.js';
+// Pruner
+export { pruner, initStartupPrune } from './pruner.js';
+//# sourceMappingURL=index.js.map

package/dist/storage/index.js.map

@@ -0,0 +1 @@
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package/dist/storage/keyword-store.d.ts

@@ -0,0 +1,25 @@
+/**
+ * FTS5-backed keyword search for chunks.
+ *
+ * Provides BM25-ranked full-text search using SQLite FTS5 with porter stemming.
+ * Mirrors VectorStore's project-filtering pattern.
+ */
+import { getDb } from './db.js';
+export interface KeywordSearchResult {
+    id: string;
+    score: number;
+}
+export declare class KeywordStore {
+    private db?;
+    constructor(db?: ReturnType<typeof getDb> | undefined);
+    private getDatabase;
+    /**
+     * Full-text search with BM25 ranking.
+     */
+    search(query: string, limit: number): KeywordSearchResult[];
+    /**
+     * Full-text search filtered by project(s).
+     */
+    searchByProject(query: string, projects: string | string[], limit: number): KeywordSearchResult[];
+}
+//# sourceMappingURL=keyword-store.d.ts.map

package/dist/storage/keyword-store.d.ts.map

@@ -0,0 +1 @@
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package/dist/storage/keyword-store.js

@@ -0,0 +1,104 @@
+/**
+ * FTS5-backed keyword search for chunks.
+ *
+ * Provides BM25-ranked full-text search using SQLite FTS5 with porter stemming.
+ * Mirrors VectorStore's project-filtering pattern.
+ */
+import { getDb } from './db.js';
+import { createLogger } from '../utils/logger.js';
+const log = createLogger('keyword-store');
+/**
+ * Sanitize a query string for FTS5 MATCH syntax.
+ * Escapes special characters and strips FTS5 operators.
+ */
+function sanitizeQuery(query) {
+    if (!query || !query.trim())
+        return '';
+    // Remove FTS5 special operators and characters
+    const sanitized = query
+        // Remove boolean operators (AND, OR, NOT as full words)
+        .replace(/\b(AND|OR|NOT)\b/g, '')
+        // Escape special FTS5 characters by wrapping terms in double quotes
+        // Remove characters that can't be in FTS5 queries
+        .replace(/[*"(){}\^~\-]/g, ' ')
+        // Collapse whitespace
+        .replace(/\s+/g, ' ')
+        .trim();
+    if (!sanitized)
+        return '';
+    // Wrap each word in double quotes for exact matching (bypasses FTS5 operators)
+    const terms = sanitized.split(/\s+/).filter(Boolean);
+    if (terms.length === 0)
+        return '';
+    return terms.map(t => `"${t}"`).join(' ');
+}
+export class KeywordStore {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    getDatabase() {
+        return this.db ?? getDb();
+    }
+    /**
+     * Full-text search with BM25 ranking.
+     */
+    search(query, limit) {
+        const sanitized = sanitizeQuery(query);
+        if (!sanitized)
+            return [];
+        const db = this.getDatabase();
+        try {
+            const rows = db.prepare(`
+        SELECT chunks.id, bm25(chunks_fts) as score
+        FROM chunks_fts
+        JOIN chunks ON chunks.rowid = chunks_fts.rowid
+        WHERE chunks_fts MATCH ?
+        ORDER BY bm25(chunks_fts)
+        LIMIT ?
+      `).all(sanitized, limit);
+            // bm25() returns negative scores (lower = better match), negate for conventional scoring
+            return rows.map(r => ({
+                id: r.id,
+                score: -r.score,
+            }));
+        }
+        catch (error) {
+            log.warn('Keyword search failed', { error: error.message });
+            return [];
+        }
+    }
+    /**
+     * Full-text search filtered by project(s).
+     */
+    searchByProject(query, projects, limit) {
+        const sanitized = sanitizeQuery(query);
+        if (!sanitized)
+            return [];
+        const db = this.getDatabase();
+        const projectList = Array.isArray(projects) ? projects : [projects];
+        if (projectList.length === 0)
+            return [];
+        const placeholders = projectList.map(() => '?').join(',');
+        try {
+            const rows = db.prepare(`
+        SELECT chunks.id, bm25(chunks_fts) as score
+        FROM chunks_fts
+        JOIN chunks ON chunks.rowid = chunks_fts.rowid
+        WHERE chunks_fts MATCH ?
+          AND chunks.session_slug IN (${placeholders})
+        ORDER BY bm25(chunks_fts)
+        LIMIT ?
+      `).all(sanitized, ...projectList, limit);
+            return rows.map(r => ({
+                id: r.id,
+                score: -r.score,
+            }));
+        }
+        catch (error) {
+            log.warn('Keyword search by project failed', { error: error.message });
+            return [];
+        }
+    }
+}
+//# sourceMappingURL=keyword-store.js.map

package/dist/storage/keyword-store.js.map

@@ -0,0 +1 @@
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package/dist/storage/migrations.d.ts

@@ -0,0 +1,12 @@
+/**
+ * Database migrations for schema evolution.
+ *
+ * Extracted from db.ts for clarity. Each migration function handles
+ * upgrading from one schema version to the next.
+ */
+import type Database from 'better-sqlite3-multiple-ciphers';
+/**
+ * Run all pending migrations on the database.
+ */
+export declare function runMigrations(database: Database.Database): void;
+//# sourceMappingURL=migrations.d.ts.map

package/dist/storage/migrations.d.ts.map

@@ -0,0 +1 @@
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