causantic 0.2.0

package/dist/eval/experiments/truncation.js

@@ -0,0 +1,59 @@
+/**
+ * Experiment 1: Same-Model Truncation Test
+ *
+ * Question: How much does jina-small's 8K context actually help vs 512-token truncation?
+ *
+ * Embeds the existing corpus with jina-small at full context (baseline, reuses cached embeddings)
+ * and with chunk text hard-truncated to ~512 tokens (~1,792 chars). Compares ROC AUC,
+ * silhouette, and cluster membership overlap.
+ */
+import { singleModelRun, embedTextsAndScore, toSnapshot, } from './single-model-run.js';
+import { computeDelta } from './types.js';
+const MODEL_ID = 'jina-small';
+/** ~512 tokens at 3.5 chars/token */
+const TRUNCATION_CHARS = 1792;
+/**
+ * Run the truncation experiment.
+ *
+ * If baselineResult is provided (from a prior run), reuses it to avoid
+ * re-embedding the full corpus.
+ */
+export async function runTruncationExperiment(chunks, pairs, baselineResult) {
+    console.log('\n=== Experiment 1: Same-Model Truncation Test ===');
+    // Baseline: full context
+    let baseline;
+    if (baselineResult) {
+        console.log('  Reusing cached baseline embeddings');
+        baseline = baselineResult;
+    }
+    else {
+        console.log('  Running baseline (full context)...');
+        baseline = await singleModelRun(MODEL_ID, chunks, pairs);
+    }
+    // Variant: truncated to ~512 tokens
+    console.log('  Running variant (truncated to ~512 tokens)...');
+    const truncatedTexts = chunks.map((c) => ({
+        id: c.id,
+        text: c.text.slice(0, TRUNCATION_CHARS),
+    }));
+    const variant = await embedTextsAndScore(MODEL_ID, truncatedTexts, pairs);
+    // Count how many chunks were actually truncated
+    const truncatedCount = chunks.filter((c) => c.text.length > TRUNCATION_CHARS).length;
+    console.log(`  ${truncatedCount}/${chunks.length} chunks were truncated ` +
+        `(${((truncatedCount / chunks.length) * 100).toFixed(1)}%)`);
+    const baselineSnap = toSnapshot(baseline, chunks.length);
+    const variantSnap = toSnapshot(variant, chunks.length);
+    const delta = computeDelta(baselineSnap, variantSnap);
+    console.log(`  Baseline ROC AUC: ${baselineSnap.rocAuc.toFixed(3)}`);
+    console.log(`  Truncated ROC AUC: ${variantSnap.rocAuc.toFixed(3)} (delta: ${delta.rocAuc >= 0 ? '+' : ''}${delta.rocAuc.toFixed(3)})`);
+    console.log(`  Baseline Silhouette: ${baselineSnap.silhouetteScore.toFixed(3)}`);
+    console.log(`  Truncated Silhouette: ${variantSnap.silhouetteScore.toFixed(3)} (delta: ${delta.silhouetteScore >= 0 ? '+' : ''}${delta.silhouetteScore.toFixed(3)})`);
+    return {
+        name: 'truncation',
+        description: `jina-small full context vs ${TRUNCATION_CHARS}-char (~512 token) truncation. ${truncatedCount}/${chunks.length} chunks affected.`,
+        baseline: baselineSnap,
+        variant: variantSnap,
+        delta,
+    };
+}
+//# sourceMappingURL=truncation.js.map

package/dist/eval/experiments/truncation.js.map

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package/dist/eval/experiments/types.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Shared types for follow-up experiments.
+ */
+export interface MetricSnapshot {
+    rocAuc: number;
+    silhouetteScore: number;
+    clusterCount: number;
+    noiseRatio: number;
+    chunkCount: number;
+}
+export interface MetricDelta {
+    rocAuc: number;
+    silhouetteScore: number;
+    clusterCount: number;
+    noiseRatio: number;
+    chunkCount: number;
+}
+export interface ExperimentResult {
+    name: string;
+    description: string;
+    baseline: MetricSnapshot;
+    variant: MetricSnapshot;
+    delta: MetricDelta;
+}
+export interface SweepRow {
+    minClusterSize: number;
+    clusterCount: number;
+    noiseRatio: number;
+    silhouetteScore: number;
+}
+export interface SweepResult {
+    name: string;
+    description: string;
+    rows: SweepRow[];
+}
+export declare function computeDelta(baseline: MetricSnapshot, variant: MetricSnapshot): MetricDelta;
+//# sourceMappingURL=types.d.ts.map

package/dist/eval/experiments/types.d.ts.map

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package/dist/eval/experiments/types.js

@@ -0,0 +1,13 @@
+/**
+ * Shared types for follow-up experiments.
+ */
+export function computeDelta(baseline, variant) {
+    return {
+        rocAuc: variant.rocAuc - baseline.rocAuc,
+        silhouetteScore: variant.silhouetteScore - baseline.silhouetteScore,
+        clusterCount: variant.clusterCount - baseline.clusterCount,
+        noiseRatio: variant.noiseRatio - baseline.noiseRatio,
+        chunkCount: variant.chunkCount - baseline.chunkCount,
+    };
+}
+//# sourceMappingURL=types.js.map

package/dist/eval/experiments/types.js.map

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package/dist/eval/experiments/vector-decay-shapes/curve-shapes-experiment.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Test different decay curve SHAPES for graph traversal range.
+ *
+ * Curves to test:
+ * - Exponential: weight = wph^hops
+ * - Linear: weight = max(0, 1 - rate * hops)
+ * - Delayed Linear: weight = 1 if hops < hold, else max(0, 1 - rate * (hops - hold))
+ */
+export {};
+//# sourceMappingURL=curve-shapes-experiment.d.ts.map

package/dist/eval/experiments/vector-decay-shapes/curve-shapes-experiment.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"curve-shapes-experiment.d.ts","sourceRoot":"","sources":["../../../../src/eval/experiments/vector-decay-shapes/curve-shapes-experiment.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG"}

package/dist/eval/experiments/vector-decay-shapes/curve-shapes-experiment.js

@@ -0,0 +1,229 @@
+/**
+ * Test different decay curve SHAPES for graph traversal range.
+ *
+ * Curves to test:
+ * - Exponential: weight = wph^hops
+ * - Linear: weight = max(0, 1 - rate * hops)
+ * - Delayed Linear: weight = 1 if hops < hold, else max(0, 1 - rate * (hops - hold))
+ */
+import { getDb } from '../../../storage/db.js';
+import { deserialize, hopCount } from '../../../temporal/vector-clock.js';
+import { getReferenceClock } from '../../../storage/clock-store.js';
+const MIN_PATH_WEIGHT = 0.001;
+const NEGATIVE_SAMPLE_COUNT = 10;
+const CURVES = [
+    // Exponential variants
+    { id: 'exp-80', name: 'Exponential 0.80', calc: h => Math.pow(0.80, h) },
+    { id: 'exp-85', name: 'Exponential 0.85', calc: h => Math.pow(0.85, h) },
+    { id: 'exp-90', name: 'Exponential 0.90', calc: h => Math.pow(0.90, h) },
+    // Linear variants (die at different hop counts)
+    { id: 'lin-10', name: 'Linear (dies@10)', calc: h => Math.max(0, 1 - h * 0.1) },
+    { id: 'lin-20', name: 'Linear (dies@20)', calc: h => Math.max(0, 1 - h * 0.05) },
+    { id: 'lin-30', name: 'Linear (dies@30)', calc: h => Math.max(0, 1 - h * 0.033) },
+    // Delayed linear: hold for N hops, then linear decay
+    { id: 'del-2-15', name: 'Delayed (2h, dies@15)', calc: h => h < 2 ? 1 : Math.max(0, 1 - (h - 2) * 0.077) },
+    { id: 'del-3-15', name: 'Delayed (3h, dies@15)', calc: h => h < 3 ? 1 : Math.max(0, 1 - (h - 3) * 0.083) },
+    { id: 'del-3-20', name: 'Delayed (3h, dies@20)', calc: h => h < 3 ? 1 : Math.max(0, 1 - (h - 3) * 0.059) },
+    { id: 'del-5-20', name: 'Delayed (5h, dies@20)', calc: h => h < 5 ? 1 : Math.max(0, 1 - (h - 5) * 0.067) },
+    { id: 'del-5-25', name: 'Delayed (5h, dies@25)', calc: h => h < 5 ? 1 : Math.max(0, 1 - (h - 5) * 0.05) },
+];
+const db = getDb();
+// Load chunks
+const chunks = new Map();
+for (const row of db.prepare(`
+  SELECT id, session_slug as sessionSlug, vector_clock as vectorClock
+  FROM chunks WHERE vector_clock IS NOT NULL
+`).all()) {
+    chunks.set(row.id, row);
+}
+// Cache reference clocks
+const refClocks = new Map();
+function getRefClock(slug) {
+    if (!refClocks.has(slug)) {
+        refClocks.set(slug, getReferenceClock(slug));
+    }
+    return refClocks.get(slug);
+}
+// Group chunks by project
+const projectChunks = new Map();
+for (const chunk of chunks.values()) {
+    const existing = projectChunks.get(chunk.sessionSlug) ?? [];
+    existing.push(chunk);
+    projectChunks.set(chunk.sessionSlug, existing);
+}
+function sampleNegatives(projectSlug, excludeIds, count) {
+    const available = projectChunks.get(projectSlug) ?? [];
+    const candidates = available.filter(c => !excludeIds.has(c.id));
+    const shuffled = [...candidates];
+    for (let i = shuffled.length - 1; i > 0; i--) {
+        const j = Math.floor(Math.random() * (i + 1));
+        [shuffled[i], shuffled[j]] = [shuffled[j], shuffled[i]];
+    }
+    return shuffled.slice(0, count);
+}
+function runExperiment(edges, curves, direction) {
+    // Group by source
+    const bySource = new Map();
+    for (const edge of edges) {
+        const existing = bySource.get(edge.sourceChunkId) ?? [];
+        existing.push(edge);
+        bySource.set(edge.sourceChunkId, existing);
+    }
+    const results = new Map();
+    for (const curve of curves) {
+        let totalRR = 0;
+        let rank1 = 0;
+        let queries = 0;
+        const bins = direction === 'backward'
+            ? { '4-9': [], '10-14': [], '15-20': [] }
+            : { '1-3': [], '4-7': [], '8-12': [], '13-20': [] };
+        for (const [sourceChunkId, srcEdges] of bySource) {
+            const sourceChunk = chunks.get(sourceChunkId);
+            const refClock = getRefClock(sourceChunk.sessionSlug);
+            const positives = srcEdges.map(e => ({
+                chunkId: e.targetChunkId,
+                hops: e.hops,
+                weight: Math.max(0, curve.calc(e.hops)),
+            }));
+            const excludeIds = new Set([sourceChunkId, ...positives.map(p => p.chunkId)]);
+            const negChunks = sampleNegatives(sourceChunk.sessionSlug, excludeIds, NEGATIVE_SAMPLE_COUNT);
+            if (negChunks.length === 0)
+                continue;
+            const negatives = negChunks.filter(c => c.vectorClock).map(c => {
+                const clock = deserialize(c.vectorClock);
+                const hops = direction === 'backward'
+                    ? hopCount(clock, refClock)
+                    : hopCount(deserialize(sourceChunk.vectorClock), clock);
+                return { chunkId: c.id, hops, weight: Math.max(0, curve.calc(Math.abs(hops))) };
+            });
+            const candidates = [
+                ...positives.map(p => ({ ...p, isPositive: true })),
+                ...negatives.map(n => ({ ...n, isPositive: false })),
+            ];
+            candidates.sort((a, b) => b.weight - a.weight);
+            let firstPosRank = 0;
+            for (let i = 0; i < candidates.length; i++) {
+                if (candidates[i].isPositive) {
+                    firstPosRank = i + 1;
+                    break;
+                }
+            }
+            const rr = firstPosRank > 0 ? 1 / firstPosRank : 0;
+            totalRR += rr;
+            if (firstPosRank === 1)
+                rank1++;
+            queries++;
+            const minHop = Math.min(...positives.map(p => p.hops));
+            let bin;
+            if (direction === 'backward') {
+                bin = minHop < 10 ? '4-9' : minHop < 15 ? '10-14' : '15-20';
+            }
+            else {
+                bin = minHop <= 3 ? '1-3' : minHop <= 7 ? '4-7' : minHop <= 12 ? '8-12' : '13-20';
+            }
+            bins[bin]?.push(rr);
+        }
+        const mrr = queries > 0 ? totalRR / queries : 0;
+        const mrrByBin = {};
+        for (const [bin, rrs] of Object.entries(bins)) {
+            mrrByBin[bin] = rrs.length > 0 ? rrs.reduce((a, b) => a + b, 0) / rrs.length : 0;
+        }
+        results.set(curve.id, { mrr, rank1, n: queries, mrrByBin });
+    }
+    return results;
+}
+// ============================================================
+// BACKWARD (4-20 hops)
+// ============================================================
+console.log('='.repeat(100));
+console.log('BACKWARD: Different Curve Shapes (4-20 hops)');
+console.log('='.repeat(100));
+const backwardEdges = db.prepare(`
+  SELECT source_chunk_id as sourceChunkId, target_chunk_id as targetChunkId,
+         vector_clock as vectorClock, reference_type as referenceType
+  FROM edges
+  WHERE edge_type = 'backward' AND vector_clock IS NOT NULL
+    AND reference_type IN ('file-path', 'code-entity', 'explicit-backref', 'error-fragment')
+`).all();
+const backwardInRange = [];
+for (const edge of backwardEdges) {
+    const sourceChunk = chunks.get(edge.sourceChunkId);
+    if (!sourceChunk?.vectorClock)
+        continue;
+    const edgeClock = deserialize(edge.vectorClock);
+    const refClock = getRefClock(sourceChunk.sessionSlug);
+    const hops = hopCount(edgeClock, refClock);
+    if (hops >= 4 && hops <= 20) {
+        backwardInRange.push({ sourceChunkId: edge.sourceChunkId, targetChunkId: edge.targetChunkId, hops, projectSlug: sourceChunk.sessionSlug });
+    }
+}
+console.log(`\nEdges: ${backwardInRange.length}\n`);
+const backwardResults = runExperiment(backwardInRange, CURVES, 'backward');
+console.log('Curve                     | MRR    | 4-9    | 10-14  | 15-20  | Rank@1');
+console.log('-'.repeat(75));
+const sortedBackward = [...backwardResults.entries()].sort((a, b) => b[1].mrr - a[1].mrr);
+for (const [id, r] of sortedBackward) {
+    const curve = CURVES.find(c => c.id === id);
+    console.log([
+        curve.name.padEnd(25),
+        r.mrr.toFixed(3).padStart(6),
+        r.mrrByBin['4-9'].toFixed(3).padStart(6),
+        r.mrrByBin['10-14'].toFixed(3).padStart(6),
+        r.mrrByBin['15-20'].toFixed(3).padStart(6),
+        r.rank1.toString().padStart(6),
+    ].join(' | '));
+}
+// ============================================================
+// FORWARD (1-20 hops)
+// ============================================================
+console.log('\n' + '='.repeat(100));
+console.log('FORWARD: Different Curve Shapes (1-20 hops)');
+console.log('='.repeat(100));
+const forwardEdges = db.prepare(`
+  SELECT source_chunk_id as sourceChunkId, target_chunk_id as targetChunkId,
+         vector_clock as vectorClock, reference_type as referenceType
+  FROM edges
+  WHERE edge_type = 'forward' AND vector_clock IS NOT NULL
+    AND reference_type IN ('file-path', 'code-entity', 'explicit-backref', 'error-fragment')
+`).all();
+const forwardInRange = [];
+for (const edge of forwardEdges) {
+    const sourceChunk = chunks.get(edge.sourceChunkId);
+    const targetChunk = chunks.get(edge.targetChunkId);
+    if (!sourceChunk?.vectorClock || !targetChunk?.vectorClock)
+        continue;
+    const sourceClock = deserialize(sourceChunk.vectorClock);
+    const targetClock = deserialize(targetChunk.vectorClock);
+    const forwardHops = hopCount(sourceClock, targetClock);
+    if (forwardHops >= 1 && forwardHops <= 20) {
+        forwardInRange.push({ sourceChunkId: edge.sourceChunkId, targetChunkId: edge.targetChunkId, hops: forwardHops, projectSlug: sourceChunk.sessionSlug });
+    }
+}
+console.log(`\nEdges: ${forwardInRange.length}\n`);
+const forwardResults = runExperiment(forwardInRange, CURVES, 'forward');
+console.log('Curve                     | MRR    | 1-3    | 4-7    | 8-12   | 13-20  | Rank@1');
+console.log('-'.repeat(85));
+const sortedForward = [...forwardResults.entries()].sort((a, b) => b[1].mrr - a[1].mrr);
+for (const [id, r] of sortedForward) {
+    const curve = CURVES.find(c => c.id === id);
+    console.log([
+        curve.name.padEnd(25),
+        r.mrr.toFixed(3).padStart(6),
+        r.mrrByBin['1-3'].toFixed(3).padStart(6),
+        r.mrrByBin['4-7'].toFixed(3).padStart(6),
+        r.mrrByBin['8-12'].toFixed(3).padStart(6),
+        r.mrrByBin['13-20'].toFixed(3).padStart(6),
+        r.rank1.toString().padStart(6),
+    ].join(' | '));
+}
+// ============================================================
+// SUMMARY
+// ============================================================
+console.log('\n' + '='.repeat(100));
+console.log('SUMMARY');
+console.log('='.repeat(100));
+const bestBackward = sortedBackward[0];
+const bestForward = sortedForward[0];
+console.log(`\nBACKWARD best: ${CURVES.find(c => c.id === bestBackward[0]).name} (MRR=${bestBackward[1].mrr.toFixed(3)})`);
+console.log(`FORWARD best:  ${CURVES.find(c => c.id === bestForward[0]).name} (MRR=${bestForward[1].mrr.toFixed(3)})`);
+//# sourceMappingURL=curve-shapes-experiment.js.map

package/dist/eval/experiments/vector-decay-shapes/curve-shapes-experiment.js.map

@@ -0,0 +1 @@
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package/dist/eval/experiments/vector-decay-shapes/graph-range-experiment.d.ts

@@ -0,0 +1,12 @@
+/**
+ * Graph traversal experiment for the 4-20 hop range.
+ *
+ * This is the "sweet spot" for graph-based retrieval:
+ * - 0-3 hops: Claude already has in context
+ * - 4-20 hops: Graph traversal with decay
+ * - 20+ hops: Vector similarity search (not graph)
+ *
+ * Also runs forward analysis: how does relevance decay into the future?
+ */
+export {};
+//# sourceMappingURL=graph-range-experiment.d.ts.map

package/dist/eval/experiments/vector-decay-shapes/graph-range-experiment.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"graph-range-experiment.d.ts","sourceRoot":"","sources":["../../../../src/eval/experiments/vector-decay-shapes/graph-range-experiment.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG"}