causantic 0.2.0

package/dist/eval/experiments/edge-decay/run-experiments.js

@@ -0,0 +1,229 @@
+/**
+ * Main experiment runner for edge decay validation.
+ */
+import { extractReferences, computeReferenceStats } from './reference-extractor.js';
+import { compareRetrievalRanking, compareForwardPrediction, evaluateTimeOffsetCorrelation, formatRetrievalRankingTable, formatTimeOffsetTable, formatDirectionalComparison, filterLongRangeReferences, } from './retrieval-ranking.js';
+import { PRESET_MODELS } from './presets.js';
+import { MS_PER_MINUTE } from './types.js';
+/**
+ * Stratified analysis configurations.
+ * Each simulates a different "context window" size that Claude has available.
+ */
+const STRATIFICATION_CONFIGS = [
+    {
+        name: 'All References',
+        description: 'Baseline: all detected references',
+        filter: {},
+    },
+    {
+        name: 'Beyond Immediate (>1 turn)',
+        description: 'Exclude immediately previous turn',
+        filter: { minTurnDistance: 2, excludeAdjacent: true },
+    },
+    {
+        name: 'Beyond Recent (>3 turns)',
+        description: 'Simulate 3-turn context window',
+        filter: { minTurnDistance: 4, excludeAdjacent: true },
+    },
+    {
+        name: 'Beyond Session (>30 min)',
+        description: 'Simulate session-level context boundary',
+        filter: { minTimeGapMs: 30 * MS_PER_MINUTE, excludeAdjacent: true },
+    },
+    {
+        name: 'Long-Range (>5 turns, high conf)',
+        description: 'High confidence references to distant turns',
+        filter: { minTurnDistance: 6, excludeAdjacent: true, highConfidenceOnly: true },
+    },
+];
+/**
+ * Run the complete edge decay validation experiment.
+ */
+export async function runEdgeDecayExperiments(sessions, options = {}) {
+    const { decayModels = PRESET_MODELS, runTimeOffsetCorrelation = true, verbose = true, } = options;
+    if (verbose) {
+        console.log('\n--- Extracting turn-to-turn references ---');
+    }
+    // Extract references from all sessions
+    const sessionRefs = await extractReferences(sessions, verbose);
+    // Compute stats
+    const stats = computeReferenceStats(sessionRefs);
+    if (verbose) {
+        console.log('\nReference statistics:');
+        console.log(`  Total turns: ${stats.totalTurns}`);
+        console.log(`  Total references: ${stats.totalReferences}`);
+        console.log(`  Avg refs per turn: ${stats.avgRefsPerTurn.toFixed(2)}`);
+        console.log('  By type:');
+        for (const [type, count] of Object.entries(stats.byType)) {
+            console.log(`    ${type}: ${count}`);
+        }
+        console.log('  By confidence:');
+        for (const [conf, count] of Object.entries(stats.byConfidence)) {
+            console.log(`    ${conf}: ${count}`);
+        }
+    }
+    if (verbose) {
+        console.log('\n--- Running retrieval ranking experiment ---');
+    }
+    // Run backward retrieval ranking
+    if (verbose) {
+        console.log('  (Backward: Given current turn, which past turns are relevant?)');
+    }
+    const retrievalResults = compareRetrievalRanking(sessionRefs, decayModels, verbose);
+    if (verbose) {
+        console.log('\n' + formatRetrievalRankingTable(retrievalResults));
+    }
+    // Run forward prediction experiment
+    let forwardResults;
+    if (options.runDirectionalAnalysis !== false) {
+        if (verbose) {
+            console.log('\n--- Running forward prediction experiment ---');
+            console.log('  (Forward: Given current turn, which future turns will reference it?)');
+        }
+        forwardResults = compareForwardPrediction(sessionRefs, decayModels, verbose);
+        if (verbose) {
+            // Show forward results table
+            const lines = [];
+            lines.push('\n' + '='.repeat(90));
+            lines.push('  FORWARD PREDICTION (Mean Reciprocal Rank)');
+            lines.push('='.repeat(90));
+            const sorted = [...forwardResults].sort((a, b) => b.mrr - a.mrr);
+            lines.push('Model                     | MRR        | Queries    | Rank@1');
+            lines.push('-'.repeat(60));
+            for (const r of sorted) {
+                const pct = r.queryCount > 0 ? ((r.rankDistribution.rank1 / r.queryCount) * 100).toFixed(0) : '0';
+                lines.push(`${r.modelName.padEnd(25)} | ${r.mrr.toFixed(3).padEnd(10)} | ${r.queryCount.toString().padEnd(10)} | ${r.rankDistribution.rank1} (${pct}%)`);
+            }
+            lines.push('='.repeat(90));
+            console.log(lines.join('\n'));
+            // Show directional comparison
+            console.log('\n' + formatDirectionalComparison(retrievalResults, forwardResults));
+        }
+    }
+    // Run time-offset correlation
+    let timeOffsetResult;
+    if (runTimeOffsetCorrelation) {
+        if (verbose) {
+            console.log('\n--- Running time-offset correlation experiment ---');
+        }
+        timeOffsetResult = evaluateTimeOffsetCorrelation(sessionRefs, decayModels);
+        if (verbose) {
+            console.log('\n' + formatTimeOffsetTable(timeOffsetResult, decayModels));
+        }
+    }
+    // Run stratified analysis
+    const stratifiedResults = {};
+    if (options.runStratifiedAnalysis !== false) {
+        if (verbose) {
+            console.log('\n' + '='.repeat(90));
+            console.log('  STRATIFIED ANALYSIS: Long-Range Retrieval');
+            console.log('  (Simulating what memory system needs to retrieve beyond Claude\'s context)');
+            console.log('='.repeat(90));
+        }
+        for (const config of STRATIFICATION_CONFIGS) {
+            const filtered = filterLongRangeReferences(sessionRefs, config.filter);
+            const totalRefs = filtered.reduce((sum, s) => sum + s.references.length, 0);
+            if (totalRefs === 0) {
+                if (verbose) {
+                    console.log(`\n--- ${config.name} ---`);
+                    console.log(`  ${config.description}`);
+                    console.log(`  No references match filter criteria`);
+                }
+                continue;
+            }
+            if (verbose) {
+                console.log(`\n--- ${config.name} ---`);
+                console.log(`  ${config.description}`);
+                console.log(`  References: ${totalRefs}`);
+            }
+            const results = compareRetrievalRanking(filtered, decayModels, false);
+            stratifiedResults[config.name] = results;
+            if (verbose) {
+                // Print compact comparison
+                console.log('\n  Model                     | MRR    | Rank@1');
+                console.log('  ' + '-'.repeat(50));
+                const sorted = [...results].sort((a, b) => b.mrr - a.mrr);
+                for (const r of sorted.slice(0, 5)) {
+                    const pct = r.queryCount > 0 ? ((r.rankDistribution.rank1 / r.queryCount) * 100).toFixed(0) : '0';
+                    console.log(`  ${r.modelName.padEnd(25)} | ${r.mrr.toFixed(3)}  | ${r.rankDistribution.rank1} (${pct}%)`);
+                }
+            }
+        }
+    }
+    // Build results
+    const results = {
+        generatedAt: new Date().toISOString(),
+        sessionCount: sessions.length,
+        turnCount: stats.totalTurns,
+        referenceCount: stats.totalReferences,
+        retrievalRanking: retrievalResults,
+        timeOffsetCorrelation: timeOffsetResult,
+    };
+    // Print recommendations
+    if (verbose) {
+        console.log('\n' + '='.repeat(90));
+        console.log('  RECOMMENDATIONS');
+        console.log('='.repeat(90));
+        // Find best model by MRR
+        const sortedByMRR = [...retrievalResults].sort((a, b) => b.mrr - a.mrr);
+        const bestModel = sortedByMRR[0];
+        console.log(`  Best model by MRR: ${bestModel.modelName} (MRR=${bestModel.mrr.toFixed(3)})`);
+        // Find model with highest rank@1
+        const sortedByRank1 = [...retrievalResults].sort((a, b) => b.rankDistribution.rank1 - a.rankDistribution.rank1);
+        const bestRank1 = sortedByRank1[0];
+        if (bestRank1.modelId !== bestModel.modelId) {
+            console.log(`  Best model by Rank@1: ${bestRank1.modelName} (${bestRank1.rankDistribution.rank1} queries)`);
+        }
+        // Check if multi-linear outperforms exponential
+        const multiLinear = retrievalResults.find(r => r.modelId === 'multi-linear-default');
+        const exponential = retrievalResults.find(r => r.modelId === 'exponential');
+        if (multiLinear && exponential) {
+            const diff = multiLinear.mrr - exponential.mrr;
+            if (diff > 0.01) {
+                console.log(`  Multi-linear outperforms exponential by ${(diff * 100).toFixed(1)}% MRR`);
+            }
+            else if (diff < -0.01) {
+                console.log(`  Exponential outperforms multi-linear by ${(-diff * 100).toFixed(1)}% MRR`);
+            }
+            else {
+                console.log(`  Multi-linear and exponential perform similarly`);
+            }
+        }
+        // Correlation insights
+        if (timeOffsetResult) {
+            const corrs = Object.entries(timeOffsetResult.correlations)
+                .map(([id, corr]) => ({ id, corr }))
+                .sort((a, b) => b.corr - a.corr);
+            console.log(`  Best correlation with reference rate: ${corrs[0].id} (ρ=${corrs[0].corr.toFixed(3)})`);
+        }
+        // Stratified insights
+        if (Object.keys(stratifiedResults).length > 0) {
+            console.log('\n  Long-range retrieval insights:');
+            // Find best model for long-range
+            const longRangeKey = 'Beyond Recent (>3 turns)';
+            const longRangeResults = stratifiedResults[longRangeKey];
+            if (longRangeResults && longRangeResults.length > 0) {
+                const sorted = [...longRangeResults].sort((a, b) => b.mrr - a.mrr);
+                console.log(`  Best model for ${longRangeKey}: ${sorted[0].modelName} (MRR=${sorted[0].mrr.toFixed(3)})`);
+                // Compare multi-linear vs exponential for long-range
+                const ml = longRangeResults.find(r => r.modelId === 'multi-linear-default');
+                const exp = longRangeResults.find(r => r.modelId === 'exponential');
+                if (ml && exp) {
+                    const diff = ml.mrr - exp.mrr;
+                    if (Math.abs(diff) > 0.01) {
+                        const better = diff > 0 ? 'Multi-linear' : 'Exponential';
+                        const worse = diff > 0 ? 'Exponential' : 'Multi-linear';
+                        console.log(`  ${better} outperforms ${worse} by ${(Math.abs(diff) * 100).toFixed(1)}% MRR for long-range`);
+                    }
+                    else {
+                        console.log(`  Multi-linear and Exponential perform similarly for long-range`);
+                    }
+                }
+            }
+        }
+    }
+    return results;
+}
+export { extractReferences, computeReferenceStats } from './reference-extractor.js';
+export { compareRetrievalRanking, evaluateTimeOffsetCorrelation } from './retrieval-ranking.js';
+//# sourceMappingURL=run-experiments.js.map

package/dist/eval/experiments/edge-decay/run-experiments.js.map

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package/dist/eval/experiments/edge-decay/simulate.d.ts

@@ -0,0 +1,42 @@
+/**
+ * Decay curve simulation and comparison.
+ */
+import type { DecayModelConfig, DecayCurve, SimulationParams, DecayModelComparison } from './types.js';
+/**
+ * Default simulation parameters.
+ */
+export declare const DEFAULT_SIMULATION_PARAMS: SimulationParams;
+/**
+ * Simulate a single decay model.
+ */
+export declare function simulateModel(config: DecayModelConfig, params?: SimulationParams): DecayCurve;
+/**
+ * Compare multiple decay models.
+ */
+export declare function compareModels(configs: DecayModelConfig[], params?: SimulationParams): DecayModelComparison;
+/**
+ * Generate a comparison table for console output.
+ */
+export declare function generateComparisonTable(comparison: DecayModelComparison): string;
+/**
+ * Export curves as CSV for plotting.
+ */
+export declare function exportCurvesCSV(comparison: DecayModelComparison): string;
+/**
+ * Find the time at which a model reaches a specific weight threshold.
+ */
+export declare function findTimeAtWeight(config: DecayModelConfig, targetWeight: number, maxSearchMs?: number, tolerance?: number): number | null;
+/**
+ * Generate milestones table (time to reach various weight thresholds).
+ */
+export declare function generateMilestonesTable(configs: DecayModelConfig[]): string;
+/**
+ * Compute area under the decay curve (integral of weight over time).
+ * Uses trapezoidal rule.
+ */
+export declare function computeAUC(curve: DecayCurve): number;
+/**
+ * Generate AUC comparison.
+ */
+export declare function generateAUCTable(comparison: DecayModelComparison): string;
+//# sourceMappingURL=simulate.d.ts.map

package/dist/eval/experiments/edge-decay/simulate.d.ts.map

@@ -0,0 +1 @@
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package/dist/eval/experiments/edge-decay/simulate.js

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+/**
+ * Decay curve simulation and comparison.
+ */
+import { formatTime, MS_PER_HOUR, MS_PER_DAY } from './types.js';
+import { calculateWeight, calculateDeathTime, peakWeight } from './decay-curves.js';
+/**
+ * Default simulation parameters.
+ */
+export const DEFAULT_SIMULATION_PARAMS = {
+    maxTimeMs: 7 * MS_PER_DAY, // 1 week
+    numPoints: 500,
+    logScale: false,
+};
+/**
+ * Generate time points for simulation.
+ */
+function generateTimePoints(params) {
+    const { maxTimeMs, numPoints, logScale } = params;
+    const points = [];
+    if (logScale) {
+        // Logarithmic spacing (more detail at early times)
+        const logMax = Math.log10(maxTimeMs);
+        const logMin = 0; // Start at 1ms
+        for (let i = 0; i < numPoints; i++) {
+            const logT = logMin + (i / (numPoints - 1)) * (logMax - logMin);
+            points.push(Math.pow(10, logT));
+        }
+    }
+    else {
+        // Linear spacing
+        for (let i = 0; i < numPoints; i++) {
+            points.push((i / (numPoints - 1)) * maxTimeMs);
+        }
+    }
+    return points;
+}
+/**
+ * Simulate a single decay model.
+ */
+export function simulateModel(config, params = DEFAULT_SIMULATION_PARAMS) {
+    const timePoints = generateTimePoints(params);
+    const points = [];
+    for (const timeMs of timePoints) {
+        const weight = calculateWeight(config, timeMs);
+        points.push({
+            timeMs,
+            timeHuman: formatTime(timeMs),
+            weight,
+            alive: weight > 0,
+        });
+    }
+    return {
+        config,
+        points,
+        deathTimeMs: calculateDeathTime(config),
+        peakWeight: peakWeight(config),
+        weightAt1Hour: calculateWeight(config, MS_PER_HOUR),
+        weightAt24Hours: calculateWeight(config, 24 * MS_PER_HOUR),
+        weightAt7Days: calculateWeight(config, 7 * MS_PER_DAY),
+    };
+}
+/**
+ * Compare multiple decay models.
+ */
+export function compareModels(configs, params = DEFAULT_SIMULATION_PARAMS) {
+    const curves = configs.map((config) => simulateModel(config, params));
+    return {
+        models: configs,
+        curves,
+        params,
+        generatedAt: new Date().toISOString(),
+    };
+}
+/**
+ * Generate a comparison table for console output.
+ */
+export function generateComparisonTable(comparison) {
+    const lines = [];
+    lines.push('='.repeat(100));
+    lines.push('  DECAY MODEL COMPARISON');
+    lines.push('='.repeat(100));
+    // Header
+    const header = [
+        pad('Model', 25),
+        pad('Peak', 8),
+        pad('@ 1h', 8),
+        pad('@ 24h', 8),
+        pad('@ 7d', 8),
+        pad('Death Time', 15),
+        pad('Type', 15),
+    ];
+    lines.push(header.join(' | '));
+    lines.push('-'.repeat(100));
+    // Rows
+    for (const curve of comparison.curves) {
+        const deathStr = curve.deathTimeMs !== null
+            ? formatTime(curve.deathTimeMs)
+            : 'asymptotic';
+        const row = [
+            pad(curve.config.name, 25),
+            pad(curve.peakWeight.toFixed(3), 8),
+            pad(curve.weightAt1Hour.toFixed(3), 8),
+            pad(curve.weightAt24Hours.toFixed(3), 8),
+            pad(curve.weightAt7Days.toFixed(3), 8),
+            pad(deathStr, 15),
+            pad(curve.config.type, 15),
+        ];
+        lines.push(row.join(' | '));
+    }
+    lines.push('='.repeat(100));
+    return lines.join('\n');
+}
+function pad(str, width) {
+    return str.padEnd(width).slice(0, width);
+}
+/**
+ * Export curves as CSV for plotting.
+ */
+export function exportCurvesCSV(comparison) {
+    const lines = [];
+    // Header
+    const modelNames = comparison.models.map((m) => m.name);
+    lines.push(['time_ms', 'time_human', ...modelNames].join(','));
+    // Use the first curve's time points as reference
+    const refCurve = comparison.curves[0];
+    for (let i = 0; i < refCurve.points.length; i++) {
+        const timeMs = refCurve.points[i].timeMs;
+        const timeHuman = refCurve.points[i].timeHuman;
+        const weights = comparison.curves.map((c) => c.points[i].weight.toFixed(6));
+        lines.push([timeMs.toFixed(0), timeHuman, ...weights].join(','));
+    }
+    return lines.join('\n');
+}
+/**
+ * Find the time at which a model reaches a specific weight threshold.
+ */
+export function findTimeAtWeight(config, targetWeight, maxSearchMs = 30 * MS_PER_DAY, tolerance = 0.001) {
+    // Binary search for the time
+    let low = 0;
+    let high = maxSearchMs;
+    const peakW = calculateWeight(config, 0);
+    if (targetWeight > peakW)
+        return null;
+    // Check if we ever reach the target (for asymptotic models)
+    const weightAtMax = calculateWeight(config, maxSearchMs);
+    if (weightAtMax > targetWeight) {
+        return null; // Never reaches target within search range
+    }
+    while (high - low > 1) {
+        const mid = (low + high) / 2;
+        const weight = calculateWeight(config, mid);
+        if (weight > targetWeight) {
+            low = mid;
+        }
+        else {
+            high = mid;
+        }
+    }
+    return high;
+}
+/**
+ * Generate milestones table (time to reach various weight thresholds).
+ */
+export function generateMilestonesTable(configs) {
+    const lines = [];
+    const thresholds = [0.75, 0.5, 0.25, 0.1, 0.01, 0];
+    lines.push('='.repeat(90));
+    lines.push('  TIME TO REACH WEIGHT THRESHOLDS');
+    lines.push('='.repeat(90));
+    // Header
+    const header = [
+        pad('Model', 25),
+        ...thresholds.map((t) => pad(`w=${t}`, 10)),
+    ];
+    lines.push(header.join(' | '));
+    lines.push('-'.repeat(90));
+    // Rows
+    for (const config of configs) {
+        const peak = peakWeight(config);
+        const times = thresholds.map((threshold) => {
+            const targetWeight = threshold * peak;
+            const time = findTimeAtWeight(config, targetWeight);
+            return time !== null ? formatTime(time) : 'never';
+        });
+        const row = [
+            pad(config.name, 25),
+            ...times.map((t) => pad(t, 10)),
+        ];
+        lines.push(row.join(' | '));
+    }
+    lines.push('='.repeat(90));
+    return lines.join('\n');
+}
+/**
+ * Compute area under the decay curve (integral of weight over time).
+ * Uses trapezoidal rule.
+ */
+export function computeAUC(curve) {
+    let auc = 0;
+    for (let i = 1; i < curve.points.length; i++) {
+        const dt = curve.points[i].timeMs - curve.points[i - 1].timeMs;
+        const avgWeight = (curve.points[i].weight + curve.points[i - 1].weight) / 2;
+        auc += avgWeight * dt;
+    }
+    return auc;
+}
+/**
+ * Generate AUC comparison.
+ */
+export function generateAUCTable(comparison) {
+    const lines = [];
+    lines.push('='.repeat(60));
+    lines.push('  AREA UNDER CURVE (Total "memory" over time)');
+    lines.push('='.repeat(60));
+    const header = [pad('Model', 30), pad('AUC', 15), pad('Relative', 15)];
+    lines.push(header.join(' | '));
+    lines.push('-'.repeat(60));
+    const aucs = comparison.curves.map((c) => ({ name: c.config.name, auc: computeAUC(c) }));
+    const maxAuc = Math.max(...aucs.map((a) => a.auc));
+    for (const { name, auc } of aucs) {
+        const relative = (auc / maxAuc) * 100;
+        const row = [
+            pad(name, 30),
+            pad(formatTime(auc), 15),
+            pad(`${relative.toFixed(1)}%`, 15),
+        ];
+        lines.push(row.join(' | '));
+    }
+    lines.push('='.repeat(60));
+    return lines.join('\n');
+}
+//# sourceMappingURL=simulate.js.map

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package/dist/eval/experiments/edge-decay/types.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Types for edge decay modeling and simulation.
+ *
+ * Re-exports from src/core/decay-types.ts — the canonical location.
+ * This file exists for backward compatibility with eval code that
+ * imports from './types.js'.
+ */
+export type { DecayTier, DecayModelConfig, DecayCurvePoint, DecayCurve, SimulationParams, DecayModelComparison, } from '../../../core/decay-types.js';
+export { MS_PER_SECOND, MS_PER_MINUTE, MS_PER_HOUR, MS_PER_DAY, MS_PER_WEEK, formatTime, } from '../../../core/decay-types.js';
+//# sourceMappingURL=types.d.ts.map

package/dist/eval/experiments/edge-decay/types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../../src/eval/experiments/edge-decay/types.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,YAAY,EACV,SAAS,EACT,gBAAgB,EAChB,eAAe,EACf,UAAU,EACV,gBAAgB,EAChB,oBAAoB,GACrB,MAAM,8BAA8B,CAAC;AAEtC,OAAO,EACL,aAAa,EACb,aAAa,EACb,WAAW,EACX,UAAU,EACV,WAAW,EACX,UAAU,GACX,MAAM,8BAA8B,CAAC"}

package/dist/eval/experiments/edge-decay/types.js

@@ -0,0 +1,9 @@
+/**
+ * Types for edge decay modeling and simulation.
+ *
+ * Re-exports from src/core/decay-types.ts — the canonical location.
+ * This file exists for backward compatibility with eval code that
+ * imports from './types.js'.
+ */
+export { MS_PER_SECOND, MS_PER_MINUTE, MS_PER_HOUR, MS_PER_DAY, MS_PER_WEEK, formatTime, } from '../../../core/decay-types.js';
+//# sourceMappingURL=types.js.map

package/dist/eval/experiments/edge-decay/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../../src/eval/experiments/edge-decay/types.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAWH,OAAO,EACL,aAAa,EACb,aAAa,EACb,WAAW,EACX,UAAU,EACV,WAAW,EACX,UAAU,GACX,MAAM,8BAA8B,CAAC"}

package/dist/eval/experiments/hdbscan-sweep.d.ts

@@ -0,0 +1,19 @@
+/**
+ * Experiment 2: HDBSCAN minClusterSize Sweep
+ *
+ * Question: Is minClusterSize=3 optimal, or are we leaving structure on the table?
+ *
+ * Reuses jina-small embeddings and sweeps minClusterSize from 2 to 10,
+ * recording cluster count, noise ratio, and silhouette score for each.
+ */
+import type { Chunk } from '../../parser/types.js';
+import type { LabeledPair } from '../annotation-schema.js';
+import { type SingleModelResult } from './single-model-run.js';
+import type { SweepResult } from './types.js';
+/**
+ * Run the HDBSCAN parameter sweep.
+ *
+ * If baselineResult is provided (with embeddings), reuses them to avoid re-embedding.
+ */
+export declare function runHdbscanSweep(chunks: Chunk[], pairs: LabeledPair[], baselineResult?: SingleModelResult): Promise<SweepResult>;
+//# sourceMappingURL=hdbscan-sweep.d.ts.map

package/dist/eval/experiments/hdbscan-sweep.d.ts.map

@@ -0,0 +1 @@
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