@wentorai/research-plugins 1.3.1 → 1.4.0

package/mcp-configs/data-platform/mcpstack-jupyter.json

@@ -1,21 +0,0 @@
-{
-  "id": "mcpstack-jupyter",
-  "name": "Jupyter MCP Stack",
-  "description": "Jupyter Notebook reproducible analysis via MCP",
-  "category": "data-platform",
-  "install": {
-    "runtime": "python",
-    "package": "mcpstack-jupyter",
-    "command": "pip install mcpstack-jupyter"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "execute_cell",
-    "create_notebook",
-    "get_output"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/mcpstack-jupyter"
-}

package/mcp-configs/data-platform/ml-mcp.json

@@ -1,21 +0,0 @@
-{
-  "id": "ml-mcp",
-  "name": "ML Training MCP",
-  "description": "ML model training, fine-tuning, and experimentation",
-  "category": "data-platform",
-  "install": {
-    "runtime": "python",
-    "package": "ml-mcp",
-    "command": "pip install ml-mcp"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "train",
-    "evaluate",
-    "predict"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/ml-mcp"
-}

package/mcp-configs/data-platform/nasdaq-data-link-mcp.json

@@ -1,20 +0,0 @@
-{
-  "id": "nasdaq-data-link-mcp",
-  "name": "Nasdaq Data Link MCP",
-  "description": "Financial and economic datasets from Nasdaq",
-  "category": "data-platform",
-  "install": {
-    "runtime": "python",
-    "package": "nasdaq-data-link-mcp",
-    "command": "pip install nasdaq-data-link-mcp"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "get_dataset",
-    "search"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/nasdaq-data-link-mcp"
-}

package/mcp-configs/data-platform/numpy-mcp.json

@@ -1,21 +0,0 @@
-{
-  "id": "numpy-mcp",
-  "name": "NumPy MCP",
-  "description": "Numerical computations with NumPy via MCP",
-  "category": "data-platform",
-  "install": {
-    "runtime": "python",
-    "package": "numpy-mcp",
-    "command": "pip install numpy-mcp"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "compute",
-    "linalg",
-    "stats"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/numpy-mcp"
-}

package/mcp-configs/database/neo4j-mcp.json

@@ -1,37 +0,0 @@
-{
-  "id": "neo4j-mcp",
-  "name": "Neo4j MCP",
-  "description": "Neo4j graph database for knowledge graphs — run Cypher queries, traverse relationships, and build citation or concept graphs for research.",
-  "category": "database",
-  "install": {
-    "runtime": "python",
-    "package": "mcp-neo4j",
-    "command": "pip install mcp-neo4j"
-  },
-  "config": {
-    "env": {
-      "NEO4J_URI": {
-        "description": "Neo4j connection URI (e.g. bolt://localhost:7687)",
-        "required": true
-      },
-      "NEO4J_USERNAME": {
-        "description": "Neo4j database username",
-        "required": true
-      },
-      "NEO4J_PASSWORD": {
-        "description": "Neo4j database password",
-        "required": true
-      }
-    }
-  },
-  "tools": [
-    "run_cypher_query",
-    "get_node",
-    "get_relationships",
-    "create_node",
-    "create_relationship",
-    "get_schema"
-  ],
-  "verified": false,
-  "source": "https://github.com/neo4j-contrib/mcp-neo4j"
-}

package/mcp-configs/database/postgres-mcp.json

@@ -1,28 +0,0 @@
-{
-  "id": "postgres-mcp",
-  "name": "PostgreSQL MCP",
-  "description": "PostgreSQL database integration — run SQL queries, inspect schemas, and manage tables in PostgreSQL databases for structured research data.",
-  "category": "database",
-  "install": {
-    "runtime": "node",
-    "package": "@anthropic/mcp-server-postgres",
-    "command": "npm install @anthropic/mcp-server-postgres"
-  },
-  "config": {
-    "env": {
-      "POSTGRES_CONNECTION_STRING": {
-        "description": "PostgreSQL connection string (e.g. postgresql://user:pass@host:5432/dbname)",
-        "required": true
-      }
-    }
-  },
-  "tools": [
-    "execute_query",
-    "list_tables",
-    "describe_table",
-    "list_schemas",
-    "read_query"
-  ],
-  "verified": false,
-  "source": "https://github.com/anthropics/mcp-server-postgres"
-}

package/mcp-configs/database/sqlite-mcp.json

@@ -1,29 +0,0 @@
-{
-  "id": "sqlite-mcp",
-  "name": "SQLite MCP",
-  "description": "SQLite database operations — execute queries, inspect schemas, create tables, and manage local SQLite databases for research data storage.",
-  "category": "database",
-  "install": {
-    "runtime": "python",
-    "package": "mcp-server-sqlite",
-    "command": "pip install mcp-server-sqlite"
-  },
-  "config": {
-    "env": {
-      "SQLITE_DB_PATH": {
-        "description": "Path to the SQLite database file",
-        "required": true
-      }
-    }
-  },
-  "tools": [
-    "execute_query",
-    "list_tables",
-    "describe_table",
-    "create_table",
-    "insert_data",
-    "read_query"
-  ],
-  "verified": false,
-  "source": "https://github.com/anthropics/mcp-server-sqlite"
-}

package/mcp-configs/dev-platform/geogebra-mcp.json

@@ -1,21 +0,0 @@
-{
-  "id": "geogebra-mcp",
-  "name": "GeoGebra MCP",
-  "description": "GeoGebra geometric construction, plotting, CAS",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "node",
-    "package": "geogebra-mcp-server",
-    "command": "npm install -g geogebra-mcp-server"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "construct",
-    "plot",
-    "compute"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/geogebra-mcp-server"
-}

package/mcp-configs/dev-platform/github-mcp.json

@@ -1,31 +0,0 @@
-{
-  "id": "github-mcp",
-  "name": "GitHub MCP",
-  "description": "GitHub repository and issue management — create issues, manage pull requests, search repositories, and access code for open-source research projects.",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "node",
-    "package": "@anthropic/mcp-server-github",
-    "command": "npm install @anthropic/mcp-server-github"
-  },
-  "config": {
-    "env": {
-      "GITHUB_TOKEN": {
-        "description": "GitHub personal access token (classic or fine-grained)",
-        "required": true
-      }
-    }
-  },
-  "tools": [
-    "search_repositories",
-    "get_repository",
-    "list_issues",
-    "create_issue",
-    "get_pull_request",
-    "create_pull_request",
-    "get_file_contents",
-    "search_code"
-  ],
-  "verified": false,
-  "source": "https://github.com/anthropics/mcp-server-github"
-}

package/mcp-configs/dev-platform/gitlab-mcp.json

@@ -1,34 +0,0 @@
-{
-  "id": "gitlab-mcp",
-  "name": "GitLab MCP",
-  "description": "GitLab project management — manage repositories, issues, merge requests, and CI/CD pipelines for research software development.",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "node",
-    "package": "mcp-server-gitlab",
-    "command": "npm install mcp-server-gitlab"
-  },
-  "config": {
-    "env": {
-      "GITLAB_TOKEN": {
-        "description": "GitLab personal access token",
-        "required": true
-      },
-      "GITLAB_URL": {
-        "description": "GitLab instance URL (defaults to https://gitlab.com)",
-        "required": false
-      }
-    }
-  },
-  "tools": [
-    "list_projects",
-    "get_project",
-    "list_issues",
-    "create_issue",
-    "list_merge_requests",
-    "get_file_contents",
-    "search_projects"
-  ],
-  "verified": false,
-  "source": "https://github.com/theailanguage/mcp-server-gitlab"
-}

package/mcp-configs/dev-platform/latex-mcp-server.json

@@ -1,21 +0,0 @@
-{
-  "id": "latex-mcp-server",
-  "name": "LaTeX MCP Server",
-  "description": "Compile LaTeX, download cited papers, run viz scripts",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "python",
-    "package": "latex-mcp-server",
-    "command": "pip install latex-mcp-server"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "compile",
-    "download_papers",
-    "run_viz"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/latex-mcp-server"
-}

package/mcp-configs/dev-platform/manim-mcp.json

@@ -1,20 +0,0 @@
-{
-  "id": "manim-mcp",
-  "name": "Manim Animation MCP",
-  "description": "Manim animation generation for math/science presentations",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "python",
-    "package": "manim-mcp-server",
-    "command": "pip install manim-mcp-server"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "create_animation",
-    "render"
-  ],
-  "verified": false,
-  "source": "https://github.com/nicosantos-mcp/manim-mcp-server"
-}

package/mcp-configs/dev-platform/mcp-echarts.json

@@ -1,20 +0,0 @@
-{
-  "id": "mcp-echarts",
-  "name": "ECharts MCP",
-  "description": "Generate visual charts using Apache ECharts",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "node",
-    "package": "mcp-echarts",
-    "command": "npm install -g mcp-echarts"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "create_chart",
-    "render"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/mcp-echarts"
-}

package/mcp-configs/dev-platform/panel-viz-mcp.json

@@ -1,20 +0,0 @@
-{
-  "id": "panel-viz-mcp",
-  "name": "Panel Viz MCP",
-  "description": "Interactive HoloViz visualizations inline in AI chat",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "python",
-    "package": "panel-viz-mcp",
-    "command": "pip install panel-viz-mcp"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "create_viz",
-    "render"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/panel-viz-mcp"
-}

package/mcp-configs/dev-platform/paperbanana.json

@@ -1,20 +0,0 @@
-{
-  "id": "paperbanana",
-  "name": "PaperBanana MCP",
-  "description": "Automated academic figures and research visuals",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "python",
-    "package": "paperbanana",
-    "command": "pip install paperbanana"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "generate_figure",
-    "plot"
-  ],
-  "verified": false,
-  "source": "https://github.com/google-research/paperbanana"
-}

package/mcp-configs/dev-platform/texflow-mcp.json

@@ -1,20 +0,0 @@
-{
-  "id": "texflow-mcp",
-  "name": "TeXFlow MCP",
-  "description": "LaTeX document compiler with MCP interface",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "node",
-    "package": "texflow-mcp",
-    "command": "npm install -g texflow-mcp"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "compile",
-    "preview"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/texflow-mcp"
-}

package/mcp-configs/dev-platform/texmcp.json

@@ -1,20 +0,0 @@
-{
-  "id": "texmcp",
-  "name": "TexMCP",
-  "description": "FastMCP microservice for LaTeX to PDF rendering",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "python",
-    "package": "texmcp",
-    "command": "pip install texmcp"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "render",
-    "compile"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/TexMCP"
-}

package/mcp-configs/dev-platform/typst-mcp.json

@@ -1,21 +0,0 @@
-{
-  "id": "typst-mcp",
-  "name": "Typst MCP",
-  "description": "Typst typesetting: convert LaTeX to Typst, validate, render",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "node",
-    "package": "typst-mcp",
-    "command": "npm install -g typst-mcp"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "compile",
-    "convert",
-    "validate"
-  ],
-  "verified": false,
-  "source": "https://github.com/jjohare/typst-mcp"
-}

package/mcp-configs/dev-platform/vizro-mcp.json

@@ -1,20 +0,0 @@
-{
-  "id": "vizro-mcp",
-  "name": "Vizro Dashboard MCP",
-  "description": "McKinsey Vizro validated data charts and dashboards",
-  "category": "dev-platform",
-  "install": {
-    "runtime": "python",
-    "package": "vizro-mcp",
-    "command": "pip install vizro-mcp"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": [
-    "create_dashboard",
-    "create_chart"
-  ],
-  "verified": false,
-  "source": "https://github.com/mckinsey/vizro-mcp"
-}

package/mcp-configs/email/email-mcp.json

@@ -1,40 +0,0 @@
-{
-  "id": "imap-smtp-mcp",
-  "name": "IMAP/SMTP Email MCP",
-  "description": "Universal IMAP/SMTP email server — connect to any email provider via standard protocols for reading, searching, and sending emails.",
-  "category": "email",
-  "install": {
-    "runtime": "python",
-    "package": "email-mcp",
-    "command": "pip install email-mcp"
-  },
-  "config": {
-    "env": {
-      "IMAP_HOST": {
-        "description": "IMAP server hostname (e.g. imap.gmail.com)",
-        "required": true
-      },
-      "SMTP_HOST": {
-        "description": "SMTP server hostname (e.g. smtp.gmail.com)",
-        "required": true
-      },
-      "EMAIL_USERNAME": {
-        "description": "Email account username or address",
-        "required": true
-      },
-      "EMAIL_PASSWORD": {
-        "description": "Email account password or app-specific password",
-        "required": true
-      }
-    }
-  },
-  "tools": [
-    "search_emails",
-    "read_email",
-    "send_email",
-    "list_folders",
-    "move_email"
-  ],
-  "verified": false,
-  "source": "https://github.com/codefuturist/email-mcp"
-}

package/mcp-configs/email/gmail-mcp.json

@@ -1,37 +0,0 @@
-{
-  "id": "gmail-mcp",
-  "name": "Gmail MCP",
-  "description": "Gmail email integration — search, read, send, and manage emails through Gmail for academic correspondence and collaboration.",
-  "category": "email",
-  "install": {
-    "runtime": "node",
-    "package": "@anthropic/mcp-server-gmail",
-    "command": "npm install @anthropic/mcp-server-gmail"
-  },
-  "config": {
-    "env": {
-      "GOOGLE_CLIENT_ID": {
-        "description": "Google OAuth 2.0 client ID",
-        "required": true
-      },
-      "GOOGLE_CLIENT_SECRET": {
-        "description": "Google OAuth 2.0 client secret",
-        "required": true
-      },
-      "GOOGLE_REFRESH_TOKEN": {
-        "description": "Google OAuth 2.0 refresh token with Gmail scope",
-        "required": true
-      }
-    }
-  },
-  "tools": [
-    "search_emails",
-    "read_email",
-    "send_email",
-    "reply_to_email",
-    "list_labels",
-    "list_threads"
-  ],
-  "verified": false,
-  "source": "https://github.com/anthropics/mcp-server-gmail"
-}

package/mcp-configs/note-knowledge/ApeRAG.json

@@ -1,17 +0,0 @@
-{
-  "id": "ApeRAG",
-  "name": "ApeRAG",
-  "description": "Production-ready RAG platform with Graph RAG and vector search for knowledge retrieval",
-  "category": "note-knowledge",
-  "install": {
-    "runtime": "python",
-    "package": "ApeRAG",
-    "command": "pip install aperag"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": ["ingest", "query", "search"],
-  "verified": false,
-  "source": "https://github.com/apecloud/ApeRAG"
-}

package/mcp-configs/note-knowledge/In-Memoria.json

@@ -1,17 +0,0 @@
-{
-  "id": "In-Memoria",
-  "name": "In Memoria",
-  "description": "Persistent intelligence with cumulative memory and pattern recognition for AI agents",
-  "category": "note-knowledge",
-  "install": {
-    "runtime": "node",
-    "package": "in-memoria",
-    "command": "npx in-memoria"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": ["learn", "recall", "pattern"],
-  "verified": false,
-  "source": "https://github.com/pi22by7/In-Memoria"
-}

package/mcp-configs/note-knowledge/agent-memory.json

@@ -1,17 +0,0 @@
-{
-  "id": "agent-memory",
-  "name": "Agent Memory",
-  "description": "Three-layer memory system with semantic search and knowledge graph for AI agents",
-  "category": "note-knowledge",
-  "install": {
-    "runtime": "python",
-    "package": "agent-memory",
-    "command": "pip install agent-memory"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": ["save_memory", "recall", "search_graph"],
-  "verified": false,
-  "source": "https://github.com/g1itchbot8888-del/agent-memory"
-}

package/mcp-configs/note-knowledge/aimemo.json

@@ -1,17 +0,0 @@
-{
-  "id": "aimemo",
-  "name": "AIMemo",
-  "description": "Zero-dependency MCP memory server, single binary, 100% local storage and recall",
-  "category": "note-knowledge",
-  "install": {
-    "runtime": "node",
-    "package": "github:MyAgentHubs/aimemo",
-    "command": "cargo install aimemo"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": ["remember", "recall", "store"],
-  "verified": false,
-  "source": "https://github.com/MyAgentHubs/aimemo"
-}

package/mcp-configs/note-knowledge/biel-mcp.json

@@ -1,19 +0,0 @@
-{
-  "id": "biel-mcp",
-  "name": "Biel MCP",
-  "description": "Connect IDE to product documentation via Biel.ai RAG for instant knowledge retrieval",
-  "category": "note-knowledge",
-  "install": {
-    "runtime": "python",
-    "package": "biel-mcp",
-    "command": "pip install biel-mcp"
-  },
-  "config": {
-    "env": {
-      "BIEL_API_KEY": ""
-    }
-  },
-  "tools": ["query_docs", "search_knowledge"],
-  "verified": false,
-  "source": "https://github.com/TechDocsStudio/biel-mcp"
-}

package/mcp-configs/note-knowledge/cognee.json

@@ -1,17 +0,0 @@
-{
-  "id": "cognee",
-  "name": "Cognee",
-  "description": "Memory manager using graph and vector stores with 30+ data sources for persistent agent knowledge",
-  "category": "note-knowledge",
-  "install": {
-    "runtime": "python",
-    "package": "cognee",
-    "command": "pip install cognee"
-  },
-  "config": {
-    "env": {}
-  },
-  "tools": ["ingest", "search", "get_graph"],
-  "verified": false,
-  "source": "https://github.com/topoteretes/cognee"
-}