@wentorai/research-plugins 1.0.0 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (415) hide show
  1. package/README.md +22 -22
  2. package/curated/analysis/README.md +82 -56
  3. package/curated/domains/README.md +225 -69
  4. package/curated/literature/README.md +115 -46
  5. package/curated/research/README.md +106 -58
  6. package/curated/tools/README.md +107 -87
  7. package/curated/writing/README.md +92 -45
  8. package/mcp-configs/academic-db/alphafold-mcp.json +20 -0
  9. package/mcp-configs/academic-db/brightspace-mcp.json +21 -0
  10. package/mcp-configs/academic-db/climatiq-mcp.json +20 -0
  11. package/mcp-configs/academic-db/gibs-mcp.json +20 -0
  12. package/mcp-configs/academic-db/gis-mcp-server.json +22 -0
  13. package/mcp-configs/academic-db/google-earth-engine-mcp.json +21 -0
  14. package/mcp-configs/academic-db/m4-clinical-mcp.json +21 -0
  15. package/mcp-configs/academic-db/medical-mcp.json +21 -0
  16. package/mcp-configs/academic-db/nexonco-mcp.json +20 -0
  17. package/mcp-configs/academic-db/omop-mcp.json +20 -0
  18. package/mcp-configs/academic-db/onekgpd-mcp.json +20 -0
  19. package/mcp-configs/academic-db/openedu-mcp.json +20 -0
  20. package/mcp-configs/academic-db/opengenes-mcp.json +20 -0
  21. package/mcp-configs/academic-db/openstax-mcp.json +21 -0
  22. package/mcp-configs/academic-db/openstreetmap-mcp.json +21 -0
  23. package/mcp-configs/academic-db/opentargets-mcp.json +21 -0
  24. package/mcp-configs/academic-db/pdb-mcp.json +21 -0
  25. package/mcp-configs/academic-db/smithsonian-mcp.json +20 -0
  26. package/mcp-configs/ai-platform/magi-researchers.json +21 -0
  27. package/mcp-configs/ai-platform/mcp-academic-researcher.json +22 -0
  28. package/mcp-configs/ai-platform/open-paper-machine.json +21 -0
  29. package/mcp-configs/ai-platform/paper-intelligence.json +21 -0
  30. package/mcp-configs/ai-platform/paper-reader.json +21 -0
  31. package/mcp-configs/ai-platform/paperdebugger.json +21 -0
  32. package/mcp-configs/browser/exa-mcp.json +20 -0
  33. package/mcp-configs/browser/mcp-searxng.json +21 -0
  34. package/mcp-configs/browser/mcp-webresearch.json +20 -0
  35. package/mcp-configs/cloud-docs/confluence-mcp.json +37 -0
  36. package/mcp-configs/cloud-docs/google-drive-mcp.json +35 -0
  37. package/mcp-configs/cloud-docs/notion-mcp.json +29 -0
  38. package/mcp-configs/communication/discord-mcp.json +29 -0
  39. package/mcp-configs/communication/discourse-mcp.json +21 -0
  40. package/mcp-configs/communication/slack-mcp.json +29 -0
  41. package/mcp-configs/communication/telegram-mcp.json +28 -0
  42. package/mcp-configs/data-platform/automl-stat-mcp.json +21 -0
  43. package/mcp-configs/data-platform/jefferson-stats-mcp.json +22 -0
  44. package/mcp-configs/data-platform/mcp-excel-server.json +21 -0
  45. package/mcp-configs/data-platform/mcp-stata.json +21 -0
  46. package/mcp-configs/data-platform/mcpstack-jupyter.json +21 -0
  47. package/mcp-configs/data-platform/ml-mcp.json +21 -0
  48. package/mcp-configs/data-platform/nasdaq-data-link-mcp.json +20 -0
  49. package/mcp-configs/data-platform/numpy-mcp.json +21 -0
  50. package/mcp-configs/database/neo4j-mcp.json +37 -0
  51. package/mcp-configs/database/postgres-mcp.json +28 -0
  52. package/mcp-configs/database/sqlite-mcp.json +29 -0
  53. package/mcp-configs/dev-platform/geogebra-mcp.json +21 -0
  54. package/mcp-configs/dev-platform/github-mcp.json +31 -0
  55. package/mcp-configs/dev-platform/gitlab-mcp.json +34 -0
  56. package/mcp-configs/dev-platform/latex-mcp-server.json +21 -0
  57. package/mcp-configs/dev-platform/manim-mcp.json +20 -0
  58. package/mcp-configs/dev-platform/mcp-echarts.json +20 -0
  59. package/mcp-configs/dev-platform/panel-viz-mcp.json +20 -0
  60. package/mcp-configs/dev-platform/paperbanana.json +20 -0
  61. package/mcp-configs/dev-platform/texflow-mcp.json +20 -0
  62. package/mcp-configs/dev-platform/texmcp.json +20 -0
  63. package/mcp-configs/dev-platform/typst-mcp.json +21 -0
  64. package/mcp-configs/dev-platform/vizro-mcp.json +20 -0
  65. package/mcp-configs/email/email-mcp.json +40 -0
  66. package/mcp-configs/email/gmail-mcp.json +37 -0
  67. package/mcp-configs/note-knowledge/local-faiss-mcp.json +21 -0
  68. package/mcp-configs/note-knowledge/mcp-memory-service.json +21 -0
  69. package/mcp-configs/note-knowledge/mcp-obsidian.json +23 -0
  70. package/mcp-configs/note-knowledge/mcp-ragdocs.json +20 -0
  71. package/mcp-configs/note-knowledge/mcp-summarizer.json +21 -0
  72. package/mcp-configs/note-knowledge/mediawiki-mcp.json +21 -0
  73. package/mcp-configs/note-knowledge/openzim-mcp.json +20 -0
  74. package/mcp-configs/note-knowledge/zettelkasten-mcp.json +21 -0
  75. package/mcp-configs/reference-mgr/academic-paper-mcp-http.json +20 -0
  76. package/mcp-configs/reference-mgr/academix.json +20 -0
  77. package/mcp-configs/reference-mgr/arxiv-research-mcp.json +21 -0
  78. package/mcp-configs/reference-mgr/google-scholar-abstract-mcp.json +19 -0
  79. package/mcp-configs/reference-mgr/google-scholar-mcp.json +20 -0
  80. package/mcp-configs/reference-mgr/mcp-paperswithcode.json +21 -0
  81. package/mcp-configs/reference-mgr/mcp-scholarly.json +20 -0
  82. package/mcp-configs/reference-mgr/mcp-simple-arxiv.json +20 -0
  83. package/mcp-configs/reference-mgr/mcp-simple-pubmed.json +20 -0
  84. package/mcp-configs/reference-mgr/mcp-zotero.json +21 -0
  85. package/mcp-configs/reference-mgr/mendeley-mcp.json +20 -0
  86. package/mcp-configs/reference-mgr/ncbi-mcp-server.json +22 -0
  87. package/mcp-configs/reference-mgr/onecite.json +21 -0
  88. package/mcp-configs/reference-mgr/paper-search-mcp.json +21 -0
  89. package/mcp-configs/reference-mgr/pubmed-search-mcp.json +21 -0
  90. package/mcp-configs/reference-mgr/scholar-mcp.json +21 -0
  91. package/mcp-configs/reference-mgr/scholar-multi-mcp.json +21 -0
  92. package/mcp-configs/reference-mgr/seerai.json +21 -0
  93. package/mcp-configs/reference-mgr/semantic-scholar-fastmcp.json +21 -0
  94. package/mcp-configs/reference-mgr/sourcelibrary.json +20 -0
  95. package/mcp-configs/registry.json +178 -149
  96. package/mcp-configs/repository/dataverse-mcp.json +33 -0
  97. package/mcp-configs/repository/huggingface-mcp.json +29 -0
  98. package/openclaw.plugin.json +2 -2
  99. package/package.json +2 -2
  100. package/skills/analysis/dataviz/algorithm-visualizer-guide/SKILL.md +259 -0
  101. package/skills/analysis/dataviz/bokeh-visualization-guide/SKILL.md +270 -0
  102. package/skills/analysis/dataviz/chart-image-generator/SKILL.md +229 -0
  103. package/skills/analysis/dataviz/citation-map-guide/SKILL.md +184 -0
  104. package/skills/analysis/dataviz/d3-visualization-guide/SKILL.md +281 -0
  105. package/skills/analysis/dataviz/data-visualization-principles/SKILL.md +171 -0
  106. package/skills/analysis/dataviz/echarts-visualization-guide/SKILL.md +250 -0
  107. package/skills/analysis/dataviz/metabase-analytics-guide/SKILL.md +242 -0
  108. package/skills/analysis/dataviz/plotly-interactive-guide/SKILL.md +266 -0
  109. package/skills/analysis/dataviz/redash-analytics-guide/SKILL.md +284 -0
  110. package/skills/analysis/econometrics/econml-causal-guide/SKILL.md +163 -0
  111. package/skills/analysis/econometrics/empirical-paper-analysis/SKILL.md +192 -0
  112. package/skills/analysis/econometrics/mostly-harmless-guide/SKILL.md +139 -0
  113. package/skills/analysis/econometrics/panel-data-analyst/SKILL.md +259 -0
  114. package/skills/analysis/econometrics/panel-data-regression-workflow/SKILL.md +267 -0
  115. package/skills/analysis/econometrics/python-causality-guide/SKILL.md +134 -0
  116. package/skills/analysis/econometrics/stata-accounting-guide/SKILL.md +269 -0
  117. package/skills/analysis/econometrics/stata-analyst-guide/SKILL.md +245 -0
  118. package/skills/analysis/econometrics/stata-reference-guide/SKILL.md +293 -0
  119. package/skills/analysis/statistics/data-anomaly-detection/SKILL.md +157 -0
  120. package/skills/analysis/statistics/general-statistics-guide/SKILL.md +226 -0
  121. package/skills/analysis/statistics/infiagent-benchmark-guide/SKILL.md +106 -0
  122. package/skills/analysis/statistics/ml-experiment-tracker/SKILL.md +212 -0
  123. package/skills/analysis/statistics/pywayne-statistics-guide/SKILL.md +192 -0
  124. package/skills/analysis/statistics/quantitative-methods-guide/SKILL.md +193 -0
  125. package/skills/analysis/statistics/senior-data-scientist-guide/SKILL.md +223 -0
  126. package/skills/analysis/wrangling/claude-data-analysis-guide/SKILL.md +100 -0
  127. package/skills/analysis/wrangling/csv-data-analyzer/SKILL.md +170 -0
  128. package/skills/analysis/wrangling/data-cleaning-pipeline/SKILL.md +266 -0
  129. package/skills/analysis/wrangling/data-cog-guide/SKILL.md +178 -0
  130. package/skills/analysis/wrangling/open-data-scientist-guide/SKILL.md +197 -0
  131. package/skills/analysis/wrangling/stata-data-cleaning/SKILL.md +276 -0
  132. package/skills/analysis/wrangling/streamline-analyst-guide/SKILL.md +119 -0
  133. package/skills/analysis/wrangling/survey-data-processing/SKILL.md +298 -0
  134. package/skills/domains/ai-ml/ai-agent-papers-guide/SKILL.md +146 -0
  135. package/skills/domains/ai-ml/ai-model-benchmarking/SKILL.md +209 -0
  136. package/skills/domains/ai-ml/annotated-dl-papers-guide/SKILL.md +159 -0
  137. package/skills/domains/ai-ml/anomaly-detection-papers-guide/SKILL.md +167 -0
  138. package/skills/domains/ai-ml/autonomous-agents-papers-guide/SKILL.md +178 -0
  139. package/skills/domains/ai-ml/dl-transformer-finetune/SKILL.md +239 -0
  140. package/skills/domains/ai-ml/domain-adaptation-papers-guide/SKILL.md +173 -0
  141. package/skills/domains/ai-ml/generative-ai-guide/SKILL.md +146 -0
  142. package/skills/domains/ai-ml/graph-learning-papers-guide/SKILL.md +125 -0
  143. package/skills/domains/ai-ml/huggingface-inference-guide/SKILL.md +196 -0
  144. package/skills/domains/ai-ml/keras-deep-learning/SKILL.md +210 -0
  145. package/skills/domains/ai-ml/kolmogorov-arnold-networks-guide/SKILL.md +185 -0
  146. package/skills/domains/ai-ml/llm-from-scratch-guide/SKILL.md +124 -0
  147. package/skills/domains/ai-ml/ml-pipeline-guide/SKILL.md +295 -0
  148. package/skills/domains/ai-ml/nlp-toolkit-guide/SKILL.md +247 -0
  149. package/skills/domains/ai-ml/npcpy-research-guide/SKILL.md +137 -0
  150. package/skills/domains/ai-ml/pytorch-guide/SKILL.md +281 -0
  151. package/skills/domains/ai-ml/pytorch-lightning-guide/SKILL.md +244 -0
  152. package/skills/domains/ai-ml/responsible-ai-guide/SKILL.md +126 -0
  153. package/skills/domains/ai-ml/tensorflow-guide/SKILL.md +241 -0
  154. package/skills/domains/ai-ml/vmas-simulator-guide/SKILL.md +129 -0
  155. package/skills/domains/biomedical/bioagents-guide/SKILL.md +308 -0
  156. package/skills/domains/biomedical/clawbio-guide/SKILL.md +167 -0
  157. package/skills/domains/biomedical/clinical-dialogue-agents-guide/SKILL.md +145 -0
  158. package/skills/domains/biomedical/ena-sequence-api/SKILL.md +175 -0
  159. package/skills/domains/biomedical/genomas-guide/SKILL.md +126 -0
  160. package/skills/domains/biomedical/genotex-benchmark-guide/SKILL.md +125 -0
  161. package/skills/domains/biomedical/med-researcher-guide/SKILL.md +161 -0
  162. package/skills/domains/biomedical/med-researcher-r1-guide/SKILL.md +146 -0
  163. package/skills/domains/biomedical/medgeclaw-guide/SKILL.md +345 -0
  164. package/skills/domains/biomedical/medical-imaging-guide/SKILL.md +305 -0
  165. package/skills/domains/biomedical/ncbi-blast-api/SKILL.md +195 -0
  166. package/skills/domains/biomedical/ncbi-datasets-api/SKILL.md +220 -0
  167. package/skills/domains/biomedical/quickgo-api/SKILL.md +181 -0
  168. package/skills/domains/business/architecture-design-guide/SKILL.md +279 -0
  169. package/skills/domains/business/innovation-management-guide/SKILL.md +257 -0
  170. package/skills/domains/business/operations-research-guide/SKILL.md +258 -0
  171. package/skills/domains/business/xpert-bi-guide/SKILL.md +84 -0
  172. package/skills/domains/chemistry/cactus-cheminformatics-guide/SKILL.md +89 -0
  173. package/skills/domains/chemistry/chemeagle-guide/SKILL.md +147 -0
  174. package/skills/domains/chemistry/chemgraph-agent-guide/SKILL.md +120 -0
  175. package/skills/domains/chemistry/molecular-dynamics-guide/SKILL.md +237 -0
  176. package/skills/domains/chemistry/pubchem-api-guide/SKILL.md +180 -0
  177. package/skills/domains/chemistry/spectroscopy-analysis-guide/SKILL.md +290 -0
  178. package/skills/domains/cs/ai-security-papers-guide/SKILL.md +103 -0
  179. package/skills/domains/cs/code-llm-papers-guide/SKILL.md +131 -0
  180. package/skills/domains/cs/distributed-systems-guide/SKILL.md +268 -0
  181. package/skills/domains/cs/formal-verification-guide/SKILL.md +298 -0
  182. package/skills/domains/cs/gaussian-splatting-papers-guide/SKILL.md +158 -0
  183. package/skills/domains/cs/llm-aiops-guide/SKILL.md +70 -0
  184. package/skills/domains/cs/software-heritage-api/SKILL.md +200 -0
  185. package/skills/domains/ecology/species-distribution-guide/SKILL.md +343 -0
  186. package/skills/domains/economics/imf-data-api-guide/SKILL.md +174 -0
  187. package/skills/domains/economics/nber-working-papers-api/SKILL.md +177 -0
  188. package/skills/domains/economics/post-labor-economics/SKILL.md +254 -0
  189. package/skills/domains/economics/pricing-psychology-guide/SKILL.md +273 -0
  190. package/skills/domains/economics/repec-economics-api/SKILL.md +188 -0
  191. package/skills/domains/economics/world-bank-data-guide/SKILL.md +179 -0
  192. package/skills/domains/education/academic-study-methods/SKILL.md +228 -0
  193. package/skills/domains/education/assessment-design-guide/SKILL.md +213 -0
  194. package/skills/domains/education/educational-research-methods/SKILL.md +179 -0
  195. package/skills/domains/education/edumcp-guide/SKILL.md +74 -0
  196. package/skills/domains/education/mooc-analytics-guide/SKILL.md +206 -0
  197. package/skills/domains/education/open-syllabus-api/SKILL.md +171 -0
  198. package/skills/domains/finance/akshare-finance-data/SKILL.md +207 -0
  199. package/skills/domains/finance/finsight-research-guide/SKILL.md +113 -0
  200. package/skills/domains/finance/options-analytics-agent-guide/SKILL.md +117 -0
  201. package/skills/domains/finance/portfolio-optimization-guide/SKILL.md +279 -0
  202. package/skills/domains/finance/risk-modeling-guide/SKILL.md +260 -0
  203. package/skills/domains/finance/stata-accounting-research/SKILL.md +372 -0
  204. package/skills/domains/geoscience/climate-modeling-guide/SKILL.md +215 -0
  205. package/skills/domains/geoscience/pangaea-data-api/SKILL.md +197 -0
  206. package/skills/domains/geoscience/satellite-remote-sensing/SKILL.md +193 -0
  207. package/skills/domains/geoscience/seismology-data-guide/SKILL.md +208 -0
  208. package/skills/domains/humanities/digital-humanities-methods/SKILL.md +232 -0
  209. package/skills/domains/humanities/ethical-philosophy-guide/SKILL.md +244 -0
  210. package/skills/domains/humanities/history-research-guide/SKILL.md +260 -0
  211. package/skills/domains/humanities/political-history-guide/SKILL.md +241 -0
  212. package/skills/domains/law/caselaw-access-api/SKILL.md +149 -0
  213. package/skills/domains/law/legal-agent-skills-guide/SKILL.md +132 -0
  214. package/skills/domains/law/legal-nlp-guide/SKILL.md +236 -0
  215. package/skills/domains/law/legal-research-methods/SKILL.md +190 -0
  216. package/skills/domains/law/opencontracts-guide/SKILL.md +168 -0
  217. package/skills/domains/law/patent-analysis-guide/SKILL.md +257 -0
  218. package/skills/domains/law/regulatory-compliance-guide/SKILL.md +267 -0
  219. package/skills/domains/math/lean-theorem-proving-guide/SKILL.md +140 -0
  220. package/skills/domains/math/symbolic-computation-guide/SKILL.md +263 -0
  221. package/skills/domains/math/topology-data-analysis/SKILL.md +305 -0
  222. package/skills/domains/pharma/clinical-trial-design-guide/SKILL.md +271 -0
  223. package/skills/domains/pharma/drug-target-interaction/SKILL.md +242 -0
  224. package/skills/domains/pharma/madd-drug-discovery-guide/SKILL.md +153 -0
  225. package/skills/domains/pharma/pharmacovigilance-guide/SKILL.md +216 -0
  226. package/skills/domains/physics/astrophysics-data-guide/SKILL.md +305 -0
  227. package/skills/domains/physics/particle-physics-guide/SKILL.md +287 -0
  228. package/skills/domains/social-science/ipums-microdata-api/SKILL.md +211 -0
  229. package/skills/domains/social-science/network-analysis-guide/SKILL.md +310 -0
  230. package/skills/domains/social-science/psychology-research-guide/SKILL.md +270 -0
  231. package/skills/domains/social-science/sociology-research-guide/SKILL.md +238 -0
  232. package/skills/domains/social-science/sociology-research-methods/SKILL.md +181 -0
  233. package/skills/literature/discovery/arxiv-paper-monitoring/SKILL.md +233 -0
  234. package/skills/literature/discovery/paper-recommendation-guide/SKILL.md +120 -0
  235. package/skills/literature/discovery/papers-we-love-guide/SKILL.md +169 -0
  236. package/skills/literature/discovery/semantic-paper-radar/SKILL.md +144 -0
  237. package/skills/literature/discovery/zotero-arxiv-daily-guide/SKILL.md +94 -0
  238. package/skills/literature/fulltext/bioc-pmc-api/SKILL.md +146 -0
  239. package/skills/literature/fulltext/core-api-guide/SKILL.md +144 -0
  240. package/skills/literature/fulltext/dataverse-api/SKILL.md +215 -0
  241. package/skills/literature/fulltext/hal-archive-api/SKILL.md +218 -0
  242. package/skills/literature/fulltext/institutional-repository-guide/SKILL.md +212 -0
  243. package/skills/literature/fulltext/open-access-mining-guide/SKILL.md +341 -0
  244. package/skills/literature/fulltext/osf-api/SKILL.md +212 -0
  245. package/skills/literature/fulltext/pmc-ftp-bulk-download/SKILL.md +182 -0
  246. package/skills/literature/fulltext/zotero-ai-butler-guide/SKILL.md +166 -0
  247. package/skills/literature/fulltext/zotero-scihub-guide/SKILL.md +168 -0
  248. package/skills/literature/metadata/academic-paper-summarizer/SKILL.md +101 -0
  249. package/skills/literature/metadata/bibliometrix-guide/SKILL.md +164 -0
  250. package/skills/literature/metadata/crossref-event-data-api/SKILL.md +183 -0
  251. package/skills/literature/metadata/doi-content-negotiation/SKILL.md +202 -0
  252. package/skills/literature/metadata/orkg-api/SKILL.md +153 -0
  253. package/skills/literature/metadata/plumx-metrics-api/SKILL.md +188 -0
  254. package/skills/literature/metadata/ror-organization-api/SKILL.md +208 -0
  255. package/skills/literature/metadata/sophosia-reference-guide/SKILL.md +110 -0
  256. package/skills/literature/metadata/viaf-authority-api/SKILL.md +209 -0
  257. package/skills/literature/metadata/wikidata-api-guide/SKILL.md +156 -0
  258. package/skills/literature/metadata/zoplicate-dedup-guide/SKILL.md +147 -0
  259. package/skills/literature/metadata/zotero-actions-tags-guide/SKILL.md +212 -0
  260. package/skills/literature/metadata/zotmoov-guide/SKILL.md +120 -0
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  262. package/skills/literature/search/arxiv-batch-reporting/SKILL.md +133 -0
  263. package/skills/literature/search/arxiv-cli-tools/SKILL.md +172 -0
  264. package/skills/literature/search/arxiv-osiris/SKILL.md +199 -0
  265. package/skills/literature/search/arxiv-paper-processor/SKILL.md +141 -0
  266. package/skills/literature/search/baidu-scholar-guide/SKILL.md +110 -0
  267. package/skills/literature/search/base-academic-search/SKILL.md +196 -0
  268. package/skills/literature/search/chatpaper-guide/SKILL.md +122 -0
  269. package/skills/literature/search/citeseerx-api/SKILL.md +183 -0
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+ ---
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+ name: deep-literature-search
3
+ description: "Multi-source exhaustive literature search across academic databases"
4
+ metadata:
5
+ openclaw:
6
+ emoji: "🕵️"
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+ category: "literature"
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+ subcategory: "search"
9
+ keywords: ["exhaustive search", "systematic search", "multi-database", "literature review", "search strategy", "PRISMA"]
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+ source: "https://github.com/utilityfog/Literature-Search"
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+ ---
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+
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+ # Deep Literature Search
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+
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+ ## Overview
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+
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+ A deep literature search goes beyond a quick Google Scholar query. It is a methodical, multi-source search process designed to identify all relevant publications on a topic with minimal omissions. This level of thoroughness is required for systematic reviews, meta-analyses, grant applications, and dissertation literature reviews where comprehensiveness is not optional—it is a methodological requirement.
18
+
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+ This skill provides a structured framework for planning, executing, and documenting exhaustive literature searches across multiple academic databases. It covers query formulation using controlled vocabularies, database selection strategy, deduplication, screening workflows, and PRISMA-compliant documentation of the search process.
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+
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+ The framework is database-agnostic and can be applied across disciplines, from biomedical sciences (PubMed, Cochrane) to social sciences (PsycINFO, ERIC), engineering (IEEE Xplore, Compendex), and multidisciplinary databases (Web of Science, Scopus, OpenAlex).
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+
23
+ ## Search Strategy Design
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+
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+ ### Step 1: Define the Research Question
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+
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+ Use the PICO/PEO/SPIDER framework appropriate to your field:
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+
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+ - **PICO** (clinical/biomedical): Population, Intervention, Comparison, Outcome
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+ - **PEO** (qualitative): Population, Exposure, Outcome
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+ - **SPIDER** (mixed methods): Sample, Phenomenon of Interest, Design, Evaluation, Research type
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+
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+ **Example**: "What is the effect of mindfulness-based interventions (I) on academic stress (O) in graduate students (P) compared to no intervention (C)?"
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+
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+ ### Step 2: Identify Key Concepts and Synonyms
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+
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+ Break your research question into 2-4 key concepts. For each concept, list all synonyms, related terms, abbreviations, and controlled vocabulary terms:
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+
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+ | Concept | Synonyms and Related Terms |
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+ |---------|---------------------------|
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+ | Mindfulness | mindfulness-based stress reduction, MBSR, meditation, mindful awareness |
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+ | Academic stress | study stress, exam anxiety, academic burnout, student distress |
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+ | Graduate students | postgraduate, doctoral students, PhD candidates, master's students |
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+
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+ ### Step 3: Build the Search String
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+
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+ Combine concepts using Boolean logic:
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+
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+ ```
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+ ("mindfulness" OR "MBSR" OR "mindfulness-based stress reduction" OR "meditation")
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+ AND
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+ ("academic stress" OR "study stress" OR "exam anxiety" OR "academic burnout")
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+ AND
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+ ("graduate student*" OR "postgraduate*" OR "doctoral student*" OR "PhD candidate*")
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+ ```
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+
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+ Key syntax rules:
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+ - Use `OR` within concept groups (broadens)
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+ - Use `AND` between concept groups (narrows)
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+ - Use `*` for truncation (e.g., `student*` matches students, student's)
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+ - Use `""` for exact phrases
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+ - Use `NOT` sparingly and document its use
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+
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+ ### Step 4: Adapt for Each Database
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+
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+ Each database has its own syntax and controlled vocabulary. You must translate your master search string for each target:
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+
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+ - **PubMed**: Use MeSH terms alongside free-text; syntax uses `[MeSH]` tags
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+ - **Scopus**: Uses `TITLE-ABS-KEY()` field codes
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+ - **Web of Science**: Uses `TS=` (Topic) and `TI=` (Title) field tags
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+ - **IEEE Xplore**: Uses "Command Search" with field codes
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+ - **OpenAlex**: Uses concept IDs and filter parameters in the API
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+
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+ ## Multi-Database Execution
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+
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+ ### Recommended Database Selection by Discipline
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+
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+ | Discipline | Primary Databases | Supplementary |
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+ |-----------|-------------------|---------------|
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+ | Biomedical | PubMed, Cochrane, Embase | CINAHL, PsycINFO |
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+ | Computer Science | IEEE Xplore, ACM DL, DBLP | Scopus, arXiv |
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+ | Social Sciences | PsycINFO, ERIC, Sociological Abstracts | Web of Science |
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+ | Engineering | Compendex, IEEE Xplore | Scopus, Web of Science |
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+ | Multidisciplinary | Web of Science, Scopus, OpenAlex | Google Scholar (supplementary) |
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+
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+ ### Execution Checklist
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+
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+ For each database:
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+ 1. Translate the master search string to the database's syntax
90
+ 2. Run the search and record the date, exact query string, and result count
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+ 3. Export all results in a structured format (RIS, BibTeX, or CSV)
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+ 4. Save a screenshot or copy of the search interface showing the query and results count
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+
94
+ ### Grey Literature and Supplementary Sources
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+
96
+ A truly exhaustive search also covers non-indexed sources:
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+
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+ - **Preprint servers**: arXiv, bioRxiv, medRxiv, SSRN
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+ - **Dissertations**: ProQuest Dissertations, EThOS, institutional repositories
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+ - **Conference proceedings**: Check major conferences in your field
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+ - **Citation chaining**: Forward (who cited this?) and backward (what did this cite?) from key papers
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+ - **Expert consultation**: Contact domain experts for unpublished or in-press work
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+ - **Trial registries**: ClinicalTrials.gov, WHO ICTRP (for clinical topics)
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+
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+ ## Deduplication and Screening
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+
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+ ### Deduplication Process
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+
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+ After collecting results from multiple databases, expect 20-40% overlap. Use reference management software to deduplicate:
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+
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+ 1. Import all exported results into a single library (Zotero, EndNote, or Rayyan)
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+ 2. Run automatic deduplication using DOI matching first, then title+author matching
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+ 3. Manually review flagged potential duplicates—automated tools miss ~5-10%
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+ 4. Record the count: total imported, duplicates removed, unique records remaining
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+
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+ ### Screening Workflow
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+
118
+ Apply a two-stage screening process:
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+
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+ - **Title/Abstract screening**: Review each unique record against your inclusion/exclusion criteria. Mark as Include, Exclude, or Maybe.
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+ - **Full-text screening**: Retrieve full texts for all Include and Maybe records. Apply detailed eligibility criteria.
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+
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+ Use screening tools like Rayyan, Covidence, or ASReview to manage this process, especially for large result sets (500+ records).
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+
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+ ## PRISMA Documentation
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+
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+ Document your entire search process using the PRISMA 2020 flow diagram:
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+
129
+ ```
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+ Records identified (N = ?)
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+ ├── Database 1 (n = ?)
132
+ ├── Database 2 (n = ?)
133
+ └── Other sources (n = ?)
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+ Duplicates removed (n = ?)
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+ Records screened (n = ?)
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+ Records excluded (n = ?)
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+ Full-text assessed (n = ?)
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+ Full-text excluded with reasons (n = ?)
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+ Studies included (n = ?)
140
+ ```
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+
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+ Save your complete search strategies (exact query strings, dates, result counts per database) as supplementary material for your publication. This transparency is essential for reproducibility and is increasingly required by journals.
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+
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+ ## References
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+
146
+ - PRISMA 2020 Statement: https://www.prisma-statement.org
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+ - Cochrane Handbook, Ch. 4 (Searching for studies): https://training.cochrane.org/handbook
148
+ - Literature Search tool: https://github.com/utilityfog/Literature-Search
149
+ - Bramer, W.M. et al. (2017). "De-duplication of database search results." BMC Medical Research Methodology.
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1
+ ---
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+ name: deepgit-search-guide
3
+ description: "Deep research tool for discovering academic code in Git repositories"
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+ version: 1.0.0
5
+ author: wentor-community
6
+ source: https://github.com/DeepGit/DeepGit
7
+ metadata:
8
+ openclaw:
9
+ category: "literature"
10
+ subcategory: "search"
11
+ keywords:
12
+ - git-search
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+ - code-discovery
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+ - repository-analysis
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+ - research-code
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+ - implementation-search
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+ - open-source
18
+ ---
19
+
20
+ # DeepGit Search Guide
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+
22
+ A skill for conducting deep searches across Git repositories to discover research implementations, datasets, and academic code artifacts. Based on DeepGit (852 stars), this skill helps researchers find, evaluate, and utilize open-source code associated with academic publications.
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+
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+ ## Overview
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+
26
+ Modern academic research increasingly relies on code for data analysis, model implementation, and experiment reproduction. However, finding the right repository among millions on GitHub requires more than simple keyword search. DeepGit applies deep research techniques to repository discovery, combining semantic code understanding, README analysis, citation linking, and quality assessment to surface the most relevant and reliable research code.
27
+
28
+ This skill is essential for researchers who want to build on existing implementations rather than reinventing from scratch, verify published results through code inspection, or find reference implementations of algorithms described in papers.
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+
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+ ## Search Strategies
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+
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+ **Keyword-Based Search**
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+ - Start with the paper title, method name, or algorithm as search terms
34
+ - Include the first author's name or institution to narrow results
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+ - Add framework-specific terms (PyTorch, TensorFlow, scikit-learn) when looking for specific implementations
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+ - Use language filters to find implementations in your preferred programming language
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+ - Combine topic tags (machine-learning, deep-learning, nlp, cv) with method-specific terms
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+
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+ **Paper-Linked Search**
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+ - Many papers include a "Code available at" link; extract and verify these first
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+ - Search Papers with Code for repository links associated with specific papers
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+ - Check the paper's Semantic Scholar or Google Scholar entry for linked code
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+ - Look for the paper's arXiv abstract which often contains a GitHub link
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+ - Search for the paper's DOI or arXiv ID in GitHub README files
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+
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+ **Author-Based Search**
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+ - Visit the first author's or corresponding author's GitHub profile
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+ - Check the research group's or lab's GitHub organization page
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+ - Look for personal academic websites that link to code repositories
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+ - Search for the author's ORCID or Google Scholar profile for linked repositories
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+ - Follow the author's collaborators who may have contributed to or forked the code
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+
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+ **Citation-Chain Search**
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+ - Find code for papers that cite or are cited by the target paper
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+ - Implementations of closely related methods often share similar repository structures
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+ - Forked repositories may contain adaptations for different datasets or settings
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+ - Look at the "Used by" and "Forks" tabs on GitHub for derivative work
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+ - Check awesome-lists in the relevant field for curated repository collections
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+
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+ ## Repository Evaluation
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+
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+ Once candidate repositories are found, evaluate them systematically:
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+
64
+ **Code Quality Indicators**
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+ - README completeness: clear description, installation instructions, usage examples
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+ - Documentation: API documentation, tutorials, or walkthroughs
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+ - Test coverage: presence of test files and CI/CD configuration
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+ - Code organization: logical directory structure, modular design
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+ - Dependencies: clear requirements file with pinned versions
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+
71
+ **Reproducibility Assessment**
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+ - Does the README specify how to reproduce the paper's results?
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+ - Are pretrained models or checkpoints provided?
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+ - Is the training data available or are instructions for obtaining it provided?
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+ - Are random seeds and hardware specifications documented?
76
+ - Do the reported results match the paper's claims?
77
+
78
+ **Maintenance Status**
79
+ - Last commit date: recent activity suggests active maintenance
80
+ - Issue response time: how quickly are issues acknowledged and addressed
81
+ - Open issues count: a high ratio of open to closed issues may indicate abandonment
82
+ - Release history: regular releases suggest mature, stable software
83
+ - Contributor count: multiple contributors indicate community involvement
84
+
85
+ **Community Signals**
86
+ - Star count: general popularity indicator (but not quality guarantee)
87
+ - Fork count: indicates others are building on the work
88
+ - Citation count of the associated paper
89
+ - Mentions in academic forums, Twitter, or blog posts
90
+ - Inclusion in curated awesome-lists or benchmark suites
91
+
92
+ ## Working with Research Code
93
+
94
+ **Getting Started**
95
+ - Clone the repository and read the entire README before proceeding
96
+ - Check the requirements file and create an isolated environment (conda, venv, Docker)
97
+ - Install dependencies using the exact versions specified
98
+ - Run the provided tests or examples to verify the installation
99
+ - Start with the simplest example before attempting full reproduction
100
+
101
+ **Common Challenges**
102
+ - Missing dependencies not listed in requirements
103
+ - Hardcoded paths that need to be adapted to your environment
104
+ - GPU memory requirements exceeding available hardware
105
+ - Dataset preprocessing steps not documented or automated
106
+ - Version conflicts between required packages
107
+
108
+ **Adaptation Strategies**
109
+ - Fork the repository before making modifications for your use case
110
+ - Document all changes you make in a changelog or commit messages
111
+ - Keep the original code as a reference branch for comparison
112
+ - Submit bug fixes back to the original repository as pull requests
113
+ - Cite the repository in your publications using its preferred citation format
114
+
115
+ ## Organizing Discovered Repositories
116
+
117
+ **Local Catalog**
118
+ - Maintain a structured record of discovered repositories with metadata
119
+ - Fields: paper title, authors, year, repo URL, stars, language, framework, reproduction status
120
+ - Tag repositories by topic, method, and dataset for cross-referencing
121
+ - Track which repositories you have successfully run and which had issues
122
+ - Note the key configuration settings that made reproduction work
123
+
124
+ **Integration with Reference Management**
125
+ - Link repository entries to corresponding Zotero or BibTeX references
126
+ - Use Zotero's URL field to store repository links alongside paper PDFs
127
+ - Tag references with "has-code" or "code-verified" for filtering
128
+ - Include repository URLs in your literature notes
129
+
130
+ ## Integration with Research-Claw
131
+
132
+ This skill enhances the Research-Claw code discovery workflow:
133
+
134
+ - Search for implementations after discovering relevant papers through literature skills
135
+ - Feed discovered code to analysis skills for experiment replication
136
+ - Connect with writing skills to properly cite code and data sources
137
+ - Store repository evaluations in the knowledge base for team access
138
+ - Automate periodic checks for new repositories related to ongoing projects
139
+
140
+ ## Best Practices
141
+
142
+ - Always check the repository's license before using code in your own projects
143
+ - Cite both the paper and the repository when using others' code
144
+ - Verify reproduction results before building on top of existing implementations
145
+ - Contribute back improvements, bug fixes, and documentation to the community
146
+ - Keep local copies of critical repositories in case they are deleted or moved
147
+ - Document your environment setup steps so collaborators can replicate your results
@@ -0,0 +1,199 @@
1
+ ---
2
+ name: eric-education-api
3
+ description: "Search 2M+ education research records via the ERIC database API"
4
+ metadata:
5
+ openclaw:
6
+ emoji: "🎓"
7
+ category: "literature"
8
+ subcategory: "search"
9
+ keywords: ["ERIC", "education research", "IES", "pedagogy", "teaching", "educational technology"]
10
+ source: "https://eric.ed.gov/"
11
+ ---
12
+
13
+ # ERIC (Education Resources Information Center) API
14
+
15
+ ## Overview
16
+
17
+ ERIC is the world's largest digital library of education research, sponsored by the U.S. Institute of Education Sciences (IES). It indexes 2M+ records including journal articles, reports, conference papers, and dissertations covering all aspects of education. The API provides free, unauthenticated access to metadata and links to full text where available.
18
+
19
+ ## API Endpoints
20
+
21
+ ### Base URL
22
+
23
+ ```
24
+ https://api.ies.ed.gov/eric/
25
+ ```
26
+
27
+ ### Search
28
+
29
+ ```bash
30
+ # Basic keyword search
31
+ curl "https://api.ies.ed.gov/eric/?search=online+learning&format=json&rows=20"
32
+
33
+ # Search in specific fields
34
+ curl "https://api.ies.ed.gov/eric/?search=title:\"blended learning\"&format=json"
35
+
36
+ # Filter by publication date
37
+ curl "https://api.ies.ed.gov/eric/?search=STEM+education&start=0&rows=25&\
38
+ publicationdatestart=2023-01-01&publicationdateend=2026-12-31&format=json"
39
+
40
+ # Filter by publication type
41
+ curl "https://api.ies.ed.gov/eric/?search=formative+assessment&\
42
+ publicationtype=Journal+Articles&format=json"
43
+
44
+ # Filter by descriptor (ERIC thesaurus term)
45
+ curl "https://api.ies.ed.gov/eric/?search=descriptor:\"Higher Education\"&format=json"
46
+
47
+ # Peer-reviewed only
48
+ curl "https://api.ies.ed.gov/eric/?search=metacognition&peerreviewed=true&format=json"
49
+ ```
50
+
51
+ ### Query Parameters
52
+
53
+ | Parameter | Description | Example |
54
+ |-----------|-------------|---------|
55
+ | `search` | Free-text or field search | `search=adaptive+learning` |
56
+ | `format` | Response format | `json` or `xml` |
57
+ | `rows` | Results per page (max 200) | `rows=50` |
58
+ | `start` | Pagination offset | `start=50` |
59
+ | `publicationtype` | Document type | `Journal Articles`, `Reports`, `Dissertations/Theses` |
60
+ | `publicationdatestart` | From date | `2024-01-01` |
61
+ | `publicationdateend` | To date | `2026-12-31` |
62
+ | `peerreviewed` | Peer-reviewed filter | `true` or `false` |
63
+ | `descriptor` | ERIC thesaurus term | `descriptor:"Distance Education"` |
64
+ | `educationlevel` | Education level | `Higher Education`, `Elementary Education` |
65
+ | `subject` | Subject area | `subject:"Mathematics Education"` |
66
+
67
+ ### Search Fields
68
+
69
+ | Field | Description |
70
+ |-------|-------------|
71
+ | `title` | Article title |
72
+ | `author` | Author name |
73
+ | `descriptor` | ERIC controlled vocabulary term |
74
+ | `source` | Journal/source name |
75
+ | `abstract` | Abstract text |
76
+ | `id` | ERIC document ID (e.g., EJ1234567) |
77
+
78
+ ### Publication Types
79
+
80
+ | Type | Description |
81
+ |------|-------------|
82
+ | `Journal Articles` | Peer-reviewed journal articles |
83
+ | `Reports - Research` | Research reports |
84
+ | `Reports - Descriptive` | Descriptive reports |
85
+ | `Reports - Evaluative` | Program evaluations |
86
+ | `Dissertations/Theses` | Graduate research |
87
+ | `Speeches/Meeting Papers` | Conference presentations |
88
+ | `Books` | Books and book chapters |
89
+
90
+ ## Response Structure
91
+
92
+ ```json
93
+ {
94
+ "response": {
95
+ "numFound": 8450,
96
+ "start": 0,
97
+ "docs": [
98
+ {
99
+ "id": "EJ1389012",
100
+ "title": "Effects of AI Tutoring on Student Learning Outcomes",
101
+ "author": ["Smith, John", "Chen, Wei"],
102
+ "source": "Journal of Educational Technology",
103
+ "publicationdateyear": 2024,
104
+ "description": "This study examines the impact of AI-powered tutoring...",
105
+ "descriptor": ["Artificial Intelligence", "Tutoring", "Academic Achievement"],
106
+ "educationlevel": ["Higher Education"],
107
+ "peerreviewed": "T",
108
+ "url": "https://eric.ed.gov/?id=EJ1389012",
109
+ "publicationtype": "Journal Articles",
110
+ "issn": "1234-5678"
111
+ }
112
+ ]
113
+ }
114
+ }
115
+ ```
116
+
117
+ ## Python Usage
118
+
119
+ ```python
120
+ import requests
121
+
122
+ BASE_URL = "https://api.ies.ed.gov/eric/"
123
+
124
+
125
+ def search_eric(query: str, rows: int = 25,
126
+ peer_reviewed: bool = True,
127
+ pub_type: str = None,
128
+ from_year: int = None) -> list:
129
+ """Search the ERIC education research database."""
130
+ params = {
131
+ "search": query,
132
+ "format": "json",
133
+ "rows": rows,
134
+ }
135
+ if peer_reviewed:
136
+ params["peerreviewed"] = "true"
137
+ if pub_type:
138
+ params["publicationtype"] = pub_type
139
+ if from_year:
140
+ params["publicationdatestart"] = f"{from_year}-01-01"
141
+
142
+ resp = requests.get(BASE_URL, params=params)
143
+ resp.raise_for_status()
144
+ data = resp.json()
145
+
146
+ results = []
147
+ for doc in data.get("response", {}).get("docs", []):
148
+ results.append({
149
+ "id": doc.get("id"),
150
+ "title": doc.get("title"),
151
+ "authors": doc.get("author", []),
152
+ "source": doc.get("source"),
153
+ "year": doc.get("publicationdateyear"),
154
+ "abstract": doc.get("description", "")[:300],
155
+ "descriptors": doc.get("descriptor", []),
156
+ "level": doc.get("educationlevel", []),
157
+ "url": doc.get("url"),
158
+ })
159
+ return results
160
+
161
+
162
+ def search_by_descriptor(descriptor: str, rows: int = 50) -> list:
163
+ """Search using ERIC thesaurus controlled vocabulary."""
164
+ return search_eric(f'descriptor:"{descriptor}"', rows=rows)
165
+
166
+
167
+ # Example: find recent AI in education research
168
+ papers = search_eric("artificial intelligence classroom",
169
+ from_year=2023, rows=10)
170
+ for p in papers:
171
+ print(f"[{p['year']}] {p['title']}")
172
+ print(f" Descriptors: {', '.join(p['descriptors'][:5])}")
173
+
174
+ # Example: search by ERIC descriptor
175
+ papers = search_by_descriptor("Gamification")
176
+ for p in papers:
177
+ print(f"{p['id']}: {p['title']} — {p['source']}")
178
+ ```
179
+
180
+ ## ERIC Thesaurus
181
+
182
+ ERIC uses a controlled vocabulary of 12,000+ descriptors for consistent indexing. Key descriptors include:
183
+
184
+ | Descriptor | Coverage |
185
+ |------------|----------|
186
+ | `Distance Education` | Online/remote learning |
187
+ | `Educational Technology` | EdTech tools and methods |
188
+ | `Higher Education` | University-level education |
189
+ | `STEM Education` | Science, technology, engineering, math |
190
+ | `Teacher Education` | Teacher training and development |
191
+ | `Assessment` | Testing and evaluation |
192
+ | `Curriculum Development` | Curriculum design |
193
+ | `Special Education` | Inclusive education |
194
+
195
+ ## References
196
+
197
+ - [ERIC Website](https://eric.ed.gov/)
198
+ - [ERIC API Guide](https://eric.ed.gov/pdf/ERIC_API.pdf)
199
+ - [ERIC Thesaurus](https://eric.ed.gov/thesaurus)
@@ -0,0 +1,177 @@
1
+ ---
2
+ name: findpapers-guide
3
+ description: "Search multiple academic databases simultaneously with Findpapers"
4
+ metadata:
5
+ openclaw:
6
+ emoji: "🔍"
7
+ category: "literature"
8
+ subcategory: "search"
9
+ keywords: ["Findpapers", "multi-database search", "systematic review", "arXiv", "PubMed", "Scopus", "IEEE"]
10
+ source: "https://github.com/jonatasgrosman/findpapers"
11
+ ---
12
+
13
+ # Findpapers Guide
14
+
15
+ ## Overview
16
+
17
+ Findpapers is a Python tool for searching multiple academic databases simultaneously — arXiv, bioRxiv, IEEE, medRxiv, PubMed, and Scopus — using a single query. It automates the tedious process of running the same search across multiple platforms, deduplicates results, and exports to structured formats for systematic reviews.
18
+
19
+ ## Installation
20
+
21
+ ```bash
22
+ pip install findpapers
23
+ ```
24
+
25
+ ## Basic Usage
26
+
27
+ ### Search Multiple Databases
28
+
29
+ ```python
30
+ import findpapers
31
+ import datetime
32
+
33
+ # Define search
34
+ query = '([deep learning] AND [medical imaging]) AND NOT [survey]'
35
+ since = datetime.date(2022, 1, 1)
36
+ until = datetime.date(2026, 12, 31)
37
+
38
+ # Run search across all databases
39
+ findpapers.search(
40
+ outputpath="search_results.json",
41
+ query=query,
42
+ since=since,
43
+ until=until,
44
+ databases=["arxiv", "pubmed", "ieee", "scopus"],
45
+ limit_per_database=200,
46
+ )
47
+ ```
48
+
49
+ ### Query Syntax
50
+
51
+ ```python
52
+ # Boolean operators: AND, OR, NOT
53
+ # Brackets for grouping
54
+ # Terms in square brackets
55
+
56
+ # Example: find NLP papers about healthcare
57
+ query = '[natural language processing] AND ([healthcare] OR [clinical])'
58
+
59
+ # Example: exclude surveys
60
+ query = '[transformer] AND [attention] AND NOT [survey]'
61
+
62
+ # Example: specific domain
63
+ query = '[reinforcement learning] AND [robotics] AND [simulation]'
64
+ ```
65
+
66
+ ### Refine and Filter Results
67
+
68
+ ```python
69
+ # Load previous search
70
+ search = findpapers.load("search_results.json")
71
+
72
+ # Interactive refinement (in Jupyter/terminal)
73
+ findpapers.refine(
74
+ inputpath="search_results.json",
75
+ categories=["relevant", "maybe", "irrelevant"],
76
+ )
77
+
78
+ # Programmatic filtering
79
+ for paper in search.papers:
80
+ if paper.citations and paper.citations > 50:
81
+ paper.selected = True
82
+ ```
83
+
84
+ ### Export Results
85
+
86
+ ```python
87
+ # Export to BibTeX
88
+ findpapers.generate_bibtex(
89
+ inputpath="search_results.json",
90
+ outputpath="references.bib",
91
+ only_selected=True,
92
+ )
93
+
94
+ # Export to CSV
95
+ findpapers.generate_csv(
96
+ inputpath="search_results.json",
97
+ outputpath="papers.csv",
98
+ )
99
+ ```
100
+
101
+ ## Database Configuration
102
+
103
+ ### API Keys (Optional)
104
+
105
+ ```python
106
+ # Scopus requires an Elsevier API key
107
+ # IEEE requires an IEEE Xplore API key
108
+ # arXiv and PubMed are free
109
+
110
+ import os
111
+ os.environ["SCOPUS_API_TOKEN"] = "your-scopus-key"
112
+ os.environ["IEEE_API_TOKEN"] = "your-ieee-key"
113
+ ```
114
+
115
+ ### Database Support
116
+
117
+ | Database | API Key | Content |
118
+ |----------|---------|---------|
119
+ | arXiv | Not needed | Preprints (CS, physics, math) |
120
+ | PubMed | Not needed | Biomedical literature |
121
+ | bioRxiv | Not needed | Biology preprints |
122
+ | medRxiv | Not needed | Medical preprints |
123
+ | IEEE | Optional | Engineering and CS |
124
+ | Scopus | Required | Multi-discipline |
125
+
126
+ ## Systematic Review Workflow
127
+
128
+ ```python
129
+ import findpapers
130
+ import datetime
131
+
132
+ # Step 1: Define protocol
133
+ query = '[machine learning] AND [drug discovery]'
134
+ since = datetime.date(2020, 1, 1)
135
+
136
+ # Step 2: Search
137
+ findpapers.search(
138
+ outputpath="slr_search.json",
139
+ query=query,
140
+ since=since,
141
+ limit_per_database=500,
142
+ )
143
+
144
+ # Step 3: Remove duplicates (automatic)
145
+ search = findpapers.load("slr_search.json")
146
+ print(f"Found {len(search.papers)} unique papers")
147
+
148
+ # Step 4: Screen titles/abstracts
149
+ findpapers.refine("slr_search.json",
150
+ categories=["include", "exclude", "uncertain"])
151
+
152
+ # Step 5: Export included papers
153
+ findpapers.generate_bibtex("slr_search.json", "included.bib",
154
+ only_selected=True)
155
+ ```
156
+
157
+ ## CLI Usage
158
+
159
+ ```bash
160
+ # Search from command line
161
+ findpapers search "search.json" \
162
+ --query "[climate change] AND [adaptation]" \
163
+ --since 2022-01-01 \
164
+ --databases arxiv pubmed
165
+
166
+ # Refine results interactively
167
+ findpapers refine "search.json"
168
+
169
+ # Export to BibTeX
170
+ findpapers bibtex "search.json" "refs.bib" --only-selected
171
+ ```
172
+
173
+ ## References
174
+
175
+ - [Findpapers GitHub](https://github.com/jonatasgrosman/findpapers)
176
+ - [Findpapers PyPI](https://pypi.org/project/findpapers/)
177
+ - Grosman, J. & Ciferri, R. (2020). "Findpapers: A tool for systematic literature searching."