@sjcrh/proteinpaint-client 2.222.0 → 2.224.0

package/dist/tvs.survival-LH2Z3WTM.js

@@ -0,0 +1,110 @@
+import {
+  escapeHtml
+} from "./chunk-U45YALDI.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-KZXFNO75.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.survival.js
+var handler = {
+  type: "survival",
+  term_name_gen,
+  get_pill_label,
+  getSelectRemovePos,
+  fillMenu,
+  setTvsDefaults
+};
+var cutoff;
+async function fillMenu(self, div, tvs) {
+  const data = await self.opts.vocabApi.getCategories(tvs.term, self.filter, self.opts.getCategoriesArguments || {});
+  const sortedVals = data.lst.sort((a, b) => {
+    return b.samplecount - a.samplecount;
+  });
+  const cutoffDiv = div.append("div").style("font-size", "0.8em").style("padding-left", "4px");
+  const cutoffInput = cutoffDiv.append("input").attr("type", "number").style("width", "40px").attr("min", 0).attr("max", 50).on("change", () => label.text(cutoffInput.node().value == "1" ? "year after" : "years after"));
+  const label = cutoffDiv.append("label").text("years after");
+  if (tvs.q?.cutoff) {
+    cutoff = tvs.q.cutoff;
+    cutoffInput.node().value = cutoff;
+  }
+  const tableCallback = (indexes) => {
+    const new_tvs = JSON.parse(JSON.stringify(tvs));
+    delete new_tvs.groupset_label;
+    new_tvs.values = sortedVals.filter((v, index, array) => indexes.includes(index));
+    cutoff = cutoffInput.node().value;
+    if (cutoff) new_tvs.q = { cutoff };
+    else new_tvs.q = {};
+    try {
+      validateCategoricalTvs(new_tvs);
+    } catch (e) {
+      window.alert(e);
+      return;
+    }
+    self.dom.tip.hide();
+    self.opts.callback(new_tvs);
+  };
+  const tableDiv = div.append("div");
+  const values_table = self.makeValueTable(tableDiv, tvs, sortedVals, tableCallback).node();
+}
+function term_name_gen(d) {
+  const name = d.term.name;
+  return name.length < 21 ? escapeHtml(name) : '<label title="' + escapeHtml(name) + '">' + escapeHtml(name.substring(0, 18)) + "...</label>";
+}
+function get_pill_label(tvs) {
+  let txt;
+  if (tvs.values.length == 1) {
+    const v = tvs.values[0];
+    if (v.label) txt = v.label;
+    else {
+      const value = tvs.term.values?.[v.key];
+      if (value) {
+        txt = value.key || value.label;
+      }
+    }
+    if (!txt) {
+      txt = v.key;
+      console.error(`key "${v.key}" not found in values{} of ${tvs.term.name}`);
+    }
+  } else {
+    if (tvs.groupset_label) txt = tvs.groupset_label;
+    else txt = tvs.values.length + " groups";
+  }
+  if (cutoff) txt = `${txt} (${cutoff == "1" ? "1 year later" : cutoff + " years later"})`;
+  return { txt: escapeHtml(txt) };
+}
+function getSelectRemovePos(j) {
+  return j;
+}
+function setTvsDefaults(tvs) {
+  if (!tvs.values) tvs.values = [];
+}
+function validateCategoricalTvs(tvs) {
+  if (!tvs.term) throw "tvs.term is not defined";
+  if (!tvs.values) throw `.values[] missing for a term ${tvs.term.name}`;
+  if (!Array.isArray(tvs.values)) throw `.values[] is not an array for a term ${tvs.term.name}`;
+  if (!tvs.values.length) throw `no categories selected for ${tvs.term.name}`;
+  if (!tvs.values.every((v) => v.key !== void 0))
+    throw `every value in tvs.values[] must have 'key' defined for ${tvs.term.name}`;
+}
+export {
+  handler
+};
+//# sourceMappingURL=tvs.survival-LH2Z3WTM.js.map

package/dist/tvs.termCollection-OQNMYVX5.js

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+import {
+  format_val_text
+} from "./chunk-ESOTBYG4.js";
+import "./chunk-OZUF7O2S.js";
+import {
+  renderFractionSelection
+} from "./chunk-U45YALDI.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-KZXFNO75.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import {
+  getTvsDenominators,
+  validateTermCollectionTvs
+} from "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import {
+  NumericRangeInput
+} from "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+
+// filter/tvs.termCollection.ts
+var handler = {
+  type: "termCollection",
+  term_name_gen,
+  get_pill_label,
+  getSelectRemovePos,
+  fillMenu,
+  setTvsDefaults
+};
+function setTvsDefaults(tvs) {
+  if (!tvs.ranges) tvs.ranges = [];
+}
+async function fillMenu(self, div, tvs) {
+  tvs = structuredClone(tvs);
+  div.selectAll("*").remove();
+  div = div.append("div").style("font-size", "0.8em");
+  let details = self.opts.vocabApi.termdbConfig.termCollections?.find((c) => c.name === tvs.term.name);
+  if (!details) {
+    if (tvs.term.isCustom && tvs.term.termlst?.length) {
+      details = { termlst: tvs.term.termlst, type: tvs.term.memberType || "numeric" };
+    } else {
+      throw new Error(`No termCollection found for name=${tvs.term.name}`);
+    }
+  }
+  if (details.type !== "numeric") throw new Error("filter only supports numeric term collection");
+  const rangeInput = renderRangeInput(div, tvs, applyRange);
+  const validateSelection = await addFilterTable({ holder: div, tvs, details, vocabApi: self.opts.vocabApi });
+  async function applyRange(tvs2) {
+    if (!validateSelection()) return;
+    self.dom.tip.hide();
+    self.opts.callback({ term: tvs2.term, ranges: [rangeInput.getRange()] });
+  }
+}
+function renderRangeInput(div, tvs, applyRange) {
+  const savedRange = tvs.ranges?.[0] || tvs.term.range;
+  const range = savedRange || { start: 0.1, startinclusive: false, stopunbounded: true };
+  const num_div = div.append("div").style("display", "flex").style("align-items", "center").style("column-gap", "5px");
+  num_div.append("span").text("Fraction 0 to 1");
+  const rangeInput = new NumericRangeInput(num_div, range, () => {
+  }, { min: 0, max: 1 });
+  num_div.append("button").text("Apply").on("click", () => {
+    try {
+      rangeInput.parseRange();
+    } catch (e) {
+      return window.alert(e);
+    }
+    applyRange(tvs);
+  });
+  return rangeInput;
+}
+async function addFilterTable(opts) {
+  const term = opts.tvs.term;
+  term.denominators = getTvsDenominators(term);
+  if (!term.numerators?.length) term.numerators = term.denominators.slice(0, 1);
+  term.termlst = opts.details.termlst;
+  renderFractionSelection({
+    holder: opts.holder,
+    selection: term,
+    propsByTermId: term.propsByTermId
+  });
+  return () => {
+    try {
+      validateTermCollectionTvs(term);
+      return true;
+    } catch (e) {
+      window.alert(e.message);
+      return false;
+    }
+  };
+}
+function getSelectRemovePos(j) {
+  return j;
+}
+function term_name_gen(d) {
+  return `Fraction(${d.term.numerators.join("+")})`;
+}
+function get_pill_label(tvs) {
+  return { txt: format_val_text(tvs.ranges[0], tvs.term) };
+}
+export {
+  addFilterTable,
+  handler
+};
+//# sourceMappingURL=tvs.termCollection-OQNMYVX5.js.map

package/dist/vocabulary-6XMG22NZ.js

@@ -0,0 +1,32 @@
+import {
+  getVocabFromSamplesArray,
+  q_to_param,
+  vocabInit
+} from "./chunk-U45YALDI.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-KZXFNO75.js";
+import "./chunk-CNFTQSNE.js";
+import "./chunk-RIHO7ZD5.js";
+import "./chunk-TVJOSRCH.js";
+import "./chunk-3CIL7KH7.js";
+import "./chunk-T4XPCSLP.js";
+import "./chunk-KBTFT76L.js";
+import "./chunk-W5J3LTYS.js";
+import "./chunk-MHWYRNGA.js";
+import "./chunk-JHLF2ZC2.js";
+import "./chunk-WJLRU5OF.js";
+import "./chunk-HBNB5TRH.js";
+import "./chunk-PF4DSFDR.js";
+import "./chunk-4OLM3KSB.js";
+import "./chunk-PWYMHUXY.js";
+import "./chunk-TLT4YIG3.js";
+import "./chunk-5R63Q5KH.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-Q5RDQNIT.js";
+import "./chunk-HS5PO5ZQ.js";
+export {
+  getVocabFromSamplesArray,
+  q_to_param,
+  vocabInit
+};
+//# sourceMappingURL=vocabulary-6XMG22NZ.js.map