@sjcrh/proteinpaint-client 2.208.0 → 2.210.0

package/dist/termCollection.unit.spec-EU6YCEPX.js

@@ -1,299 +0,0 @@
-import {
-  SearchHandler
-} from "./chunk-AAJXHERO.js";
-import {
-  require_tape
-} from "./chunk-PJYCTAMC.js";
-import "./chunk-QJ3HYZH3.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-DMWOK4DS.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-5IMFPVGT.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-VMRO6DMC.js";
-import "./chunk-HKKTNIMX.js";
-import "./chunk-GMRIEUBW.js";
-import "./chunk-4EZLVENZ.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import {
-  __toESM
-} from "./chunk-HS5PO5ZQ.js";
-
-// termdb/handlers/test/termCollection.unit.spec.ts
-var import_tape = __toESM(require_tape(), 1);
-function getHolder() {
-  return select_default("body").append("div");
-}
-function getTermCollectionDetails(overrides = {}) {
-  return {
-    name: "Test Collection",
-    type: "gene",
-    memberType: "gene",
-    termlst: [
-      { id: "gene1", name: "TP53", values: { tissue: "Lung" } },
-      { id: "gene2", name: "KRAS", values: { tissue: "Colon" } },
-      { id: "gene3", name: "BRCA1", values: { tissue: "Breast" } }
-    ],
-    categoryKeys: [
-      { key: "tissue", shown: true },
-      { key: "expression", shown: false }
-    ],
-    propsByTermId: {
-      gene1: { color: "#FF0000" },
-      gene2: { color: "#00FF00" }
-    },
-    ...overrides
-  };
-}
-(0, import_tape.default)("\n", function(test) {
-  test.comment("-***- termdb/handlers/termCollection -***-");
-  test.end();
-});
-(0, import_tape.default)("init() should render term list table with all terms from details.termlst", async (test) => {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const details = getTermCollectionDetails();
-  await handler.init({
-    holder,
-    callback: () => {
-    },
-    app: {},
-    details
-  });
-  const table = holder.select("table");
-  test.ok(table.node(), "Should render a table");
-  const rows = table.selectAll("tbody tr");
-  test.equal(rows.size(), 3, "Should render three rows for three terms");
-  const rowTexts = rows.nodes().map((row) => row.textContent.trim());
-  test.ok(rowTexts[0].includes("TP53"), "First row should contain TP53");
-  test.ok(rowTexts[1].includes("KRAS"), "Second row should contain KRAS");
-  test.ok(rowTexts[2].includes("BRCA1"), "Third row should contain BRCA1");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init() should render category table when details.categoryKeys is present", async (test) => {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const details = getTermCollectionDetails();
-  await handler.init({
-    holder,
-    callback: () => {
-    },
-    app: {},
-    details
-  });
-  const tables = holder.selectAll("table");
-  test.equal(tables.size(), 2, "Should render two tables when categoryKeys is present");
-  const categoryTable = tables.nodes()[1];
-  const categoryRows = select_default(categoryTable).selectAll("tbody tr");
-  test.equal(categoryRows.size(), 2, "Should render two rows for two categories");
-  const categoryTexts = categoryRows.nodes().map((row) => row.textContent.trim());
-  test.ok(categoryTexts[0].includes("tissue"), "Should display tissue category key");
-  test.ok(categoryTexts[1].includes("expression"), "Should display expression category key");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init() should call callback with selected terms, categoryKeys, and properties", async (test) => {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const details = getTermCollectionDetails();
-  let callbackResult;
-  await handler.init({
-    holder,
-    callback: (result) => {
-      callbackResult = result;
-    },
-    app: {},
-    details
-  });
-  const termsTable = holder.selectAll("table").nodes()[0];
-  const checkboxes = termsTable.querySelectorAll('tbody input[type="checkbox"]');
-  checkboxes[0].checked = true;
-  checkboxes[1].checked = true;
-  checkboxes[2].checked = false;
-  const categoryTable = holder.selectAll("table").nodes()[1];
-  const categoryCheckboxes = categoryTable.querySelectorAll('tbody input[type="checkbox"]');
-  categoryCheckboxes[0].checked = true;
-  categoryCheckboxes[1].checked = false;
-  const selectBtn = holder.select('[data-testid="sjpp-term-collection-select"]').node();
-  selectBtn.click();
-  test.equal(callbackResult?.type, "termCollection", "Should set type to termCollection");
-  test.equal(callbackResult?.name, "Test Collection", "Should pass collection name");
-  test.equal(callbackResult?.memberType, "gene", "Should pass memberType");
-  test.deepEqual(callbackResult?.termIds, ["gene1", "gene2"], "Should pass selected term IDs");
-  test.equal(callbackResult?.termlst.length, 2, "Should pass selected term list with correct length");
-  test.equal(callbackResult?.termlst[0].name, "TP53", "First selected term should be TP53");
-  test.equal(callbackResult?.termlst[1].name, "KRAS", "Second selected term should be KRAS");
-  test.deepEqual(
-    callbackResult?.categoryKeys,
-    [
-      { key: "tissue", shown: true },
-      { key: "expression", shown: false }
-    ],
-    "Should pass updated categoryKeys with shown status"
-  );
-  test.deepEqual(
-    callbackResult?.propsByTermId,
-    { gene1: { color: "#FF0000" }, gene2: { color: "#00FF00" } },
-    "Should pass propsByTermId for selected terms only"
-  );
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init() should not render category table when details.categoryKeys is missing", async (test) => {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const details = getTermCollectionDetails({ categoryKeys: void 0 });
-  await handler.init({
-    holder,
-    callback: () => {
-    },
-    app: {},
-    details
-  });
-  const tables = holder.selectAll("table");
-  test.equal(tables.size(), 1, "Should render only one table when categoryKeys is missing");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init() disables the Select button for an invalid collection", async (test) => {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const details = getTermCollectionDetails();
-  let callbackResult;
-  await handler.init({
-    holder,
-    callback: (result) => {
-      callbackResult = result;
-    },
-    app: {},
-    details
-  });
-  const selectBtn = holder.select('[data-testid="sjpp-term-collection-select"]').node();
-  const getChecks = (tableIdx) => [
-    ...holder.selectAll("table").nodes()[tableIdx].querySelectorAll('tbody input[type="checkbox"]')
-  ];
-  const terms = () => getChecks(0);
-  const categories = () => getChecks(1);
-  test.equal(selectBtn.disabled, false, "enables the button for the default selection");
-  terms()[0].click();
-  test.equal(selectBtn.disabled, false, "stays enabled with two selected variables");
-  terms()[1].click();
-  test.equal(selectBtn.disabled, true, "disables the button with a single selected variable");
-  test.ok(`${selectBtn.title}`.includes("two variables"), `titles the button with the reason: ${selectBtn.title}`);
-  selectBtn.click();
-  test.equal(callbackResult, void 0, "a disabled button does not submit the selection");
-  terms()[1].click();
-  test.equal(selectBtn.disabled, false, "re-enables the button with two selected variables");
-  categories()[0].click();
-  test.equal(selectBtn.disabled, false, "stays enabled with one selected category");
-  categories()[1].click();
-  test.equal(selectBtn.disabled, true, "disables the button without a selected category");
-  test.ok(`${selectBtn.title}`.includes("category"), `titles the button with the reason: ${selectBtn.title}`);
-  categories()[1].click();
-  test.equal(selectBtn.disabled, false, "re-enables the button for a valid collection");
-  selectBtn.click();
-  test.deepEqual(callbackResult?.termIds, ["gene2", "gene3"], "submits the selected variables");
-  test.deepEqual(
-    callbackResult?.categoryKeys,
-    [
-      { key: "tissue", shown: false },
-      { key: "expression", shown: true }
-    ],
-    "submits the selected categories"
-  );
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("fraction selection returns a raw fraction wrapper and retains every member", async (test) => {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const details = getTermCollectionDetails({
-    type: "numeric",
-    memberType: "numeric",
-    categoryKeys: void 0
-  });
-  let callbackResult;
-  await handler.init({
-    holder,
-    callback: (result) => {
-      callbackResult = result;
-    },
-    app: {},
-    details,
-    usecase: { target: "barchart", detail: "term2" },
-    termCollectionSelectionMode: "fraction"
-  });
-  test.ok(holder.text().includes("Denominator"), "renders the denominator selector");
-  test.ok(holder.text().includes("Numerator"), "renders the numerator selector");
-  const rows = holder.selectAll("tbody tr").nodes();
-  const numerator = rows[1].querySelector('[data-testid="sjpp-term-collection-numerator"]');
-  numerator.click();
-  holder.select('[data-testid="sjpp-term-collection-fraction-select"]').node().click();
-  test.equal(callbackResult?.type, "TermCollectionTWFraction", "returns a fraction wrapper");
-  test.deepEqual(callbackResult?.q.denominators, ["gene1", "gene2", "gene3"], "defaults all members as denominators");
-  test.deepEqual(callbackResult?.q.numerators, ["gene1", "gene2"], "returns the selected numerators");
-  test.equal(callbackResult?.term.termlst.length, 3, "keeps the complete source member list");
-  test.deepEqual(callbackResult?.term.termIds, ["gene1", "gene2", "gene3"], "keeps every source member ID");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("fraction selection clears and disables the numerator of a deselected denominator", async (test) => {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const details = getTermCollectionDetails({
-    type: "numeric",
-    memberType: "numeric",
-    categoryKeys: void 0
-  });
-  let callbackResult;
-  await handler.init({
-    holder,
-    callback: (result) => {
-      callbackResult = result;
-    },
-    app: {},
-    details,
-    usecase: { target: "barchart", detail: "term2" },
-    termCollectionSelectionMode: "fraction"
-  });
-  const getNumerators = () => holder.selectAll('[data-testid="sjpp-term-collection-numerator"]').nodes();
-  const getDenominators = () => holder.selectAll('[data-testid="sjpp-term-collection-denominator"]').nodes();
-  getDenominators()[0].click();
-  test.equal(getNumerators()[0].checked, false, "clears the numerator of a deselected denominator");
-  test.equal(getNumerators()[0].disabled, true, "disables the numerator of a deselected denominator");
-  const selectBtn = holder.select('[data-testid="sjpp-term-collection-fraction-select"]').node();
-  test.equal(selectBtn.disabled, true, "disables the Select button without a numerator");
-  selectBtn.click();
-  test.equal(callbackResult, void 0, "does not submit a fraction without a numerator");
-  getDenominators()[0].click();
-  test.equal(getNumerators()[0].disabled, false, "enables the numerator when its denominator is restored");
-  test.equal(getNumerators()[0].checked, false, "does not silently restore the numerator");
-  getNumerators()[1].click();
-  holder.select('[data-testid="sjpp-term-collection-fraction-select"]').node().click();
-  test.deepEqual(callbackResult?.q.numerators, ["gene2"], "submits the edited numerator selection");
-  test.deepEqual(
-    callbackResult?.q.denominators,
-    ["gene1", "gene2", "gene3"],
-    "submits the restored denominator selection"
-  );
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-//# sourceMappingURL=termCollection.unit.spec-EU6YCEPX.js.map

package/dist/termCollectionFractionSelection-UBS74X36.js

@@ -1,42 +0,0 @@
-import {
-  getDefaultFractionSelection,
-  getFractionSelectionError,
-  makeFractionTermWrapper,
-  mayRenderFractionSelection,
-  pickCollectionFraction,
-  renderFractionSelection
-} from "./chunk-QJ3HYZH3.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-DMWOK4DS.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-5IMFPVGT.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-VMRO6DMC.js";
-import "./chunk-HKKTNIMX.js";
-import "./chunk-GMRIEUBW.js";
-import "./chunk-4EZLVENZ.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  getDefaultFractionSelection,
-  getFractionSelectionError,
-  makeFractionTermWrapper,
-  mayRenderFractionSelection,
-  pickCollectionFraction,
-  renderFractionSelection
-};
-//# sourceMappingURL=termCollectionFractionSelection-UBS74X36.js.map

package/dist/termCollectionFractionSelection.unit.spec-Y5OJFGDD.js

@@ -1,188 +0,0 @@
-import {
-  require_tape
-} from "./chunk-PJYCTAMC.js";
-import {
-  mayRenderFractionSelection,
-  renderFractionSelection
-} from "./chunk-QJ3HYZH3.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-DMWOK4DS.js";
-import "./chunk-ELJX3QIQ.js";
-import "./chunk-5IMFPVGT.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-VMRO6DMC.js";
-import "./chunk-HKKTNIMX.js";
-import "./chunk-GMRIEUBW.js";
-import "./chunk-4EZLVENZ.js";
-import "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import {
-  __toESM
-} from "./chunk-HS5PO5ZQ.js";
-
-// termdb/handlers/test/termCollectionFractionSelection.unit.spec.ts
-var import_tape = __toESM(require_tape(), 1);
-function getDivs() {
-  const holder = select_default("body").append("div");
-  return { holder, listDiv: holder.append("div"), fractionDiv: holder.append("div").style("display", "none") };
-}
-function getCollectionTerm(overrides = {}) {
-  return {
-    type: "termCollection",
-    isCustom: true,
-    memberType: "numeric",
-    name: "Splice junction event",
-    termlst: [
-      { id: "junction-1", name: "junction-1" },
-      { id: "junction-2", name: "junction-2" }
-    ],
-    ...overrides
-  };
-}
-(0, import_tape.default)("\n", function(test) {
-  test.comment("-***- termdb/handlers/termCollectionFractionSelection -***-");
-  test.end();
-});
-(0, import_tape.default)("mayRenderFractionSelection() renders the chooser for a numeric collection", (test) => {
-  const { holder, listDiv, fractionDiv } = getDivs();
-  let selected;
-  const term = getCollectionTerm();
-  const isStaged = mayRenderFractionSelection({
-    term,
-    selectionMode: "fraction",
-    listDiv,
-    fractionDiv,
-    callback: (tw) => selected = tw
-  });
-  test.equal(isStaged, true, "defers the selection to the chooser");
-  test.equal(listDiv.style("display"), "none", "hides the term list");
-  test.ok(fractionDiv.text().includes("Denominator"), "renders the denominator selector");
-  test.ok(fractionDiv.text().includes("Numerator"), "renders the numerator selector");
-  fractionDiv.select('[data-testid="sjpp-term-collection-fraction-select"]').node().click();
-  test.equal(selected?.type, "TermCollectionTWFraction", "submits a fraction wrapper");
-  test.deepEqual(selected?.q.denominators, ["junction-1", "junction-2"], "defaults all members as denominators");
-  test.deepEqual(selected?.q.numerators, ["junction-1"], "defaults only the first member as numerator");
-  test.equal(selected?.term, term, "wraps the clicked term as is");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("mayRenderFractionSelection() back button restores the term list", (test) => {
-  const { holder, listDiv, fractionDiv } = getDivs();
-  mayRenderFractionSelection({
-    term: getCollectionTerm(),
-    selectionMode: "fraction",
-    listDiv,
-    fractionDiv,
-    callback: () => {
-    }
-  });
-  fractionDiv.select('[data-testid="sjpp-term-collection-fraction-back"]').node().click();
-  test.notEqual(listDiv.style("display"), "none", "shows the term list again");
-  test.equal(fractionDiv.style("display"), "none", "hides the chooser");
-  test.equal(fractionDiv.selectAll("*").size(), 0, "clears the chooser");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("mayRenderFractionSelection() skips terms that do not require a fraction", (test) => {
-  const cases = [
-    { label: "no fraction selection mode", selectionMode: void 0, term: getCollectionTerm() },
-    {
-      label: "categorical collection",
-      selectionMode: "fraction",
-      term: getCollectionTerm({ memberType: "categorical" })
-    },
-    { label: "collection without members", selectionMode: "fraction", term: getCollectionTerm({ termlst: [] }) },
-    { label: "non-collection term", selectionMode: "fraction", term: { type: "junction", id: "junction-1" } }
-  ];
-  for (const c of cases) {
-    const { holder, listDiv, fractionDiv } = getDivs();
-    const isStaged = mayRenderFractionSelection({
-      term: c.term,
-      selectionMode: c.selectionMode,
-      listDiv,
-      fractionDiv,
-      callback: () => {
-      }
-    });
-    test.equal(isStaged, false, `does not stage a selection for ${c.label}`);
-    test.equal(fractionDiv.selectAll("*").size(), 0, `renders no chooser for ${c.label}`);
-    test.notEqual(listDiv.style("display"), "none", `keeps the term list visible for ${c.label}`);
-    if (test["_ok"]) holder.remove();
-  }
-  test.end();
-});
-(0, import_tape.default)("renderFractionSelection() only renders the Select button with a selectCallback", (test) => {
-  const holder = select_default("body").append("div");
-  const term = getCollectionTerm();
-  renderFractionSelection({
-    holder,
-    termlst: term.termlst,
-    selection: { numerators: ["junction-1"], denominators: ["junction-1", "junction-2"] }
-  });
-  test.equal(
-    holder.selectAll('[data-testid="sjpp-term-collection-fraction-select"]').size(),
-    0,
-    "renders no button for a caller with its own apply button"
-  );
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("renderFractionSelection() disables the Select button for an inapplicable selection", (test) => {
-  const holder = select_default("body").append("div");
-  const term = getCollectionTerm({
-    termlst: [
-      { id: "junction-1", name: "junction-1" },
-      { id: "junction-2", name: "junction-2" },
-      { id: "junction-3", name: "junction-3" }
-    ]
-  });
-  const selected = [];
-  const selection = { numerators: ["junction-1"], denominators: term.termlst.map((t) => t.id) };
-  renderFractionSelection({
-    holder,
-    termlst: term.termlst,
-    selection,
-    selectCallback: (s) => selected.push(structuredClone(s))
-  });
-  const selectBtn = holder.select('[data-testid="sjpp-term-collection-fraction-select"]').node();
-  const numerators = holder.selectAll('[data-testid="sjpp-term-collection-numerator"]').nodes();
-  const denominators = holder.selectAll('[data-testid="sjpp-term-collection-denominator"]').nodes();
-  test.equal(selectBtn.disabled, false, "enables the button for the starting selection");
-  numerators[0].click();
-  test.equal(selectBtn.disabled, true, "disables the button without a numerator");
-  test.ok(`${selectBtn.title}`.includes("numerator"), `titles the button with the reason: ${selectBtn.title}`);
-  selectBtn.click();
-  test.equal(selected.length, 0, "a disabled button does not submit the selection");
-  numerators[0].click();
-  denominators[1].click();
-  test.equal(selectBtn.disabled, false, "stays enabled with two denominators");
-  denominators[2].click();
-  test.equal(selectBtn.disabled, true, "disables the button with a single denominator");
-  test.ok(`${selectBtn.title}`.includes("denominator"), `titles the button with the reason: ${selectBtn.title}`);
-  denominators[1].click();
-  test.equal(selectBtn.disabled, false, "re-enables the button for an applicable selection");
-  selectBtn.click();
-  test.deepEqual(
-    selected,
-    [{ numerators: ["junction-1"], denominators: ["junction-1", "junction-2"] }],
-    "submits the current selection"
-  );
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-//# sourceMappingURL=termCollectionFractionSelection.unit.spec-Y5OJFGDD.js.map