@sjcrh/proteinpaint-client 2.208.0 → 2.210.0

package/dist/chunk-SUNDNTVY.js

@@ -1,302 +0,0 @@
-import {
-  appear2 as appear,
-  axisstyle,
-  bwSetting,
-  disappear2 as disappear,
-  makeNumericAxisConfig,
-  rgb2hex
-} from "./chunk-QJ3HYZH3.js";
-import {
-  dofetch3
-} from "./chunk-VMRO6DMC.js";
-import {
-  axisLeft
-} from "./chunk-Z2ZITHT4.js";
-import {
-  format,
-  linear
-} from "./chunk-4OLM3KSB.js";
-
-// src/block.tk.bigwig.js
-function bigwigfromtemplate(tk, template) {
-  tk.scale = {};
-  if (template.scale) {
-    for (const k in template.scale) {
-      tk.scale[k] = template.scale[k];
-    }
-  } else {
-    tk.scale.auto = 1;
-  }
-  if (tk.normalize) {
-  } else {
-    tk.normalize = {
-      dividefactor: 1,
-      disable: 1
-    };
-  }
-  tk.barheight = template.height || 50;
-  tk.height_main = tk.toppad + tk.barheight + tk.bottompad;
-  if (!tk.ncolor) tk.ncolor = "#BD005E";
-  if (!tk.ncolor2) tk.ncolor2 = "#5E00BD";
-  if (!tk.pcolor) tk.pcolor = "#005EBD";
-  if (!tk.pcolor2) tk.pcolor2 = "#FA7D00";
-}
-function bigwigmaketk(tk, block) {
-  tk.img = tk.glider.append("image");
-  tk.tklabel.attr("y", tk.barheight / 2);
-  tk.leftaxis = tk.gleft.append("g");
-  tk.config_handle = block.maketkconfighandle(tk).on("click", () => {
-    tk.tkconfigtip.clear().showunder(tk.config_handle.node());
-    bigwigconfigpanel(tk, block, tk.tkconfigtip.d, () => bigwigload(tk, block));
-  });
-}
-async function bigwigload(tk, block) {
-  block.tkcloakon(tk);
-  const par = block.tkarg_q(tk);
-  if (tk.dotplotfactor) par.dotplotfactor = tk.dotplotfactor;
-  if (tk.bgcolor) par.bgcolor = tk.bgcolor;
-  tk.height_main = tk.toppad + tk.barheight + tk.bottompad;
-  tk.img.attr("width", block.width).attr("height", tk.barheight);
-  let errtext;
-  try {
-    let data;
-    if (tk.imgData) {
-      data = tk.imgData;
-    } else {
-      data = await dofetch3("tkbigwig", { method: "POST", body: JSON.stringify(par) });
-    }
-    if (data.error) throw data.error;
-    if (!data.src) throw "data.src missing";
-    tk.tklabel.transition().attr("y", tk.barheight / 2);
-    tk.img.attr("xlink:href", data.src);
-    if (data.minv != void 0) {
-      tk.scale.min = data.minv;
-    }
-    if (data.maxv != void 0) {
-      tk.scale.max = data.maxv;
-    }
-    tk.leftaxis.selectAll("*").remove();
-    if (data.nodata) {
-      throw "No data in view range";
-    }
-    const scale = linear().domain([tk.scale.min, tk.scale.max]).range([tk.barheight, 0]);
-    const axis = axisLeft().scale(scale).tickValues([tk.scale.min, tk.scale.max]);
-    if (tk.integer4axis) {
-      axis.tickFormat(format("d"));
-    }
-    axisstyle({
-      axis: tk.leftaxis.call(axis),
-      color: "black",
-      showline: true
-    });
-  } catch (err) {
-    tk.img.attr("width", 0).attr("height", 0);
-    if (err.stack) {
-      console.log(err.stack);
-    }
-    errtext = typeof err == "string" ? err : err.message;
-  } finally {
-    block.tkcloakoff(tk, { error: errtext });
-    block.block_setheight();
-    for (const panel of tk.subpanels) {
-      bigwigloadsubpanel(tk, block, panel);
-    }
-  }
-}
-async function bigwigloadsubpanel(tk, block, panel) {
-  block.tkcloakon_subpanel(panel);
-  const par = block.tkarg_q(tk);
-  if (tk.dotplotfactor) {
-    par.dotplotfactor = tk.dotplotfactor;
-  }
-  par.width = panel.width;
-  par.rglst = [
-    {
-      chr: panel.chr,
-      start: panel.start,
-      stop: panel.stop,
-      width: panel.width
-    }
-  ];
-  delete par.percentile;
-  delete par.autoscale;
-  panel.img.attr("width", panel.width).attr("height", tk.barheight);
-  let errtext;
-  try {
-    if (tk.imgData) throw "subpanel not supported by imgData yet";
-    const data = await dofetch3("tkbigwig", { method: "POST", body: JSON.stringify(par) });
-    if (data.error) throw data.error;
-    panel.img.attr("xlink:href", data.src);
-  } catch (err) {
-    panel.img.attr("width", 0).attr("height", 0);
-    if (err.stack) {
-      console.log(err.stack);
-    }
-    errtext = typeof err == "string" ? err : err.message;
-  } finally {
-    block.tkcloakoff_subpanel(panel, { error: errtext });
-  }
-}
-function bigwigconfigpanel(tk, block, holder, loader) {
-  const config = {
-    pcolor: {},
-    ncolor: {},
-    pcolor2: {},
-    ncolor2: {},
-    // .row
-    // .lab
-    dotplot: {},
-    // .row
-    dividefactor: {}
-  };
-  {
-    const row = holder.append("div").style("margin-bottom", "15px");
-    row.append("span").html("Height  ");
-    row.append("input").attr("size", 5).property("value", tk.barheight).on("keyup", (event) => {
-      if (event.code != "Enter") return;
-      const s = event.target.value;
-      if (s == "") return;
-      const v = Number.parseInt(s);
-      if (Number.isNaN(v) || v <= 1) {
-        alert("track height must be positive integer");
-        return;
-      }
-      tk.barheight = v;
-      loader(bwSetting.height);
-    });
-  }
-  config.pcolor.row = holder.append("div").style("margin-bottom", "15px");
-  config.pcolor.lab = config.pcolor.row.append("span").text("Positive value color").style("padding-right", "10px");
-  config.pcolor.row.append("input").attr("type", "color").property("value", rgb2hex(tk.pcolor)).on("change", (event) => {
-    tk.pcolor = event.target.value;
-    loader(bwSetting.pcolor);
-  });
-  config.ncolor.row = holder.append("div").style("margin-bottom", "15px");
-  config.ncolor.lab = config.ncolor.row.append("span").text("Negative value color").style("padding-right", "10px");
-  config.ncolor.row.append("input").attr("type", "color").property("value", rgb2hex(tk.ncolor)).on("change", (event) => {
-    tk.ncolor = event.target.value;
-    loader(bwSetting.ncolor);
-  });
-  if (!tk.scale.auto) {
-    config.pcolor2.row = holder.append("div").style("margin-bottom", "15px");
-    config.pcolor2.lab = config.pcolor2.row.append("span").html("&ge;Max color").style("padding-right", "10px");
-    config.pcolor2.row.append("input").attr("type", "color").property("value", rgb2hex(tk.pcolor2)).on("change", (event) => {
-      tk.pcolor2 = event.target.value;
-      loader(bwSetting.pcolor2);
-    });
-    config.ncolor2.row = holder.append("div").style("margin-bottom", "15px");
-    config.ncolor2.lab = config.ncolor2.row.append("span").html("&le;Min color").style("padding-right", "10px");
-    config.ncolor2.row.append("input").attr("type", "color").property("value", rgb2hex(tk.ncolor2)).on("change", (event) => {
-      tk.ncolor2 = event.target.value;
-      loader(bwSetting.ncolor2);
-    });
-  }
-  {
-    const setting = {};
-    if (tk.scale.auto) {
-      setting.auto = 1;
-    } else if (tk.scale.percentile) {
-      setting.percentile = tk.scale.percentile;
-    } else {
-      setting.fixed = { min: tk.scale.min, max: tk.scale.max };
-    }
-    makeNumericAxisConfig({
-      holder: holder.append("div").style("margin-bottom", "15px"),
-      setting,
-      callback: (s) => {
-        if (s.auto) {
-          tk.scale.auto = 1;
-          loader(bwSetting.autoscale);
-          return;
-        }
-        if (s.fixed) {
-          delete tk.scale.auto;
-          delete tk.scale.percentile;
-          tk.scale.max = s.fixed.max;
-          tk.scale.min = s.fixed.min;
-          loader(bwSetting.fixedscale);
-          return;
-        }
-        delete tk.scale.auto;
-        tk.scale.percentile = s.percentile;
-        loader(bwSetting.percentilescale);
-      }
-    });
-  }
-  {
-    config.dotplot.row = holder.append("div").style("margin-bottom", "15px");
-    config.dotplot.row.append("span").html("Dot plot&nbsp;&nbsp;");
-    const s = config.dotplot.row.append("select").on("change", (event) => {
-      const i = event.target.selectedIndex;
-      if (i == 0) {
-        delete tk.dotplotfactor;
-      } else {
-        tk.dotplotfactor = Number.parseInt(event.target.options[i].innerHTML);
-      }
-      loader(i == 0 ? bwSetting.nodotplot : bwSetting.usedotplot);
-    });
-    let o = s.append("option").text("no");
-    if (!tk.dotplotfactor) {
-      o.property("selected", 1);
-    }
-    o = s.append("option").text("5");
-    if (tk.dotplotfactor == 5) {
-      o.property("selected", 1);
-    }
-    o = s.append("option").text("10");
-    if (tk.dotplotfactor == 10) {
-      o.property("selected", 1);
-    }
-    o = s.append("option").text("15");
-    if (tk.dotplotfactor == 15) {
-      o.property("selected", 1);
-    }
-    o = s.append("option").text("20");
-    if (tk.dotplotfactor == 20) {
-      o.property("selected", 1);
-    }
-  }
-  config.dividefactor.row = holder.append("div");
-  {
-    const id = Math.random().toString();
-    const input = config.dividefactor.row.append("input").attr("type", "checkbox").attr("id", id);
-    if (!tk.normalize.disable) {
-      input.property("checked", 1);
-    }
-    config.dividefactor.row.append("label").html("&nbsp;Apply normalization").attr("for", id);
-    const folder = config.dividefactor.row.append("div").style("margin", "5px 10px 0px 20px").style("display", tk.normalize.disable ? "none" : "block");
-    folder.append("span").html("Divide raw value by&nbsp;");
-    const factorinput = folder.append("input").attr("type", "number").style("width", "60px").property("value", tk.normalize.dividefactor).on("keyup", (event) => {
-      if (event.code != "Enter" && event.code != "NumpadEnter") return;
-      const v = event.target.value;
-      if (v <= 0) {
-        return;
-      }
-      tk.normalize.dividefactor = v;
-      loader(bwSetting.usedividefactor);
-    });
-    folder.append("div").text("Enter a value above zero").style("font-size", ".7em").style("color", "#858585");
-    input.on("change", (event) => {
-      if (event.target.checked) {
-        appear(folder);
-        delete tk.normalize.disable;
-        factorinput.property("value", tk.normalize.dividefactor);
-        loader(bwSetting.usedividefactor);
-        return;
-      }
-      disappear(folder);
-      tk.normalize.disable = 1;
-      loader(bwSetting.nodividefactor);
-    });
-  }
-  return config;
-}
-
-export {
-  bigwigfromtemplate,
-  bigwigmaketk,
-  bigwigload,
-  bigwigloadsubpanel,
-  bigwigconfigpanel
-};
-//# sourceMappingURL=chunk-SUNDNTVY.js.map

package/dist/chunk-SYPSS3JQ.js

@@ -1,387 +0,0 @@
-import {
-  addBrushes,
-  addNewBrush
-} from "./chunk-A7OWXDYA.js";
-import {
-  niceNumLabels,
-  violinRenderer
-} from "./chunk-7X6NF7NI.js";
-import {
-  convertUnits,
-  getValueConversionFactor
-} from "./chunk-W5J3LTYS.js";
-import {
-  NumericRangeInput
-} from "./chunk-FXQXCOII.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-
-// filter/tvs.numeric.js
-var handler = {
-  type: "numeric",
-  term_name_gen,
-  get_pill_label,
-  getSelectRemovePos,
-  fillMenu,
-  setTvsDefaults
-};
-function term_name_gen(d) {
-  const name = d.term.name;
-  return name.length < 26 ? name : '<label title="' + name + '">' + name.substring(0, 24) + "...</label>";
-}
-function get_pill_label(tvs) {
-  if (tvs.ranges.length == 1) {
-    const v = tvs.ranges[0];
-    if ("value" in v) {
-      if (v.label) return { txt: v.label };
-      if (tvs.term.values && tvs.term.values[v.value] && tvs.term.values[v.value].label)
-        return { txt: tvs.term.values[v.value].label };
-      console.error(`key "${v.value}" not found in values{} of ${tvs.term.name}`);
-      return { txt: v.value };
-    }
-    return { txt: format_val_text(v, tvs.term) };
-  }
-  return { txt: tvs.ranges.length + " intervals" };
-}
-function format_val_text(range, term) {
-  const x = '<span style="font-family:Times;font-style:italic;font-size:1em; vertical-align:top">x</span>';
-  if (range.startunbounded && range.stopunbounded) {
-    const inf = (sign = "") => `<span style='vertical-align: middle; font-size:1.1em; line-height: 0.9em'>${sign}\u221E</span>`;
-    const lt = `<span style='vertical-align: top; font-size: 0.9em'>&lt;</span>`;
-    return `<span>${inf("\uFE63")} ${lt} ${x} ${lt} ${inf("\uFE62")}</span>`;
-  }
-  const vc = term.valueConversion;
-  if (range.startunbounded)
-    return `${x} ${range.stopinclusive ? "&le;" : "&lt;"} ${vc ? convertUnits(range.stop, vc.fromUnit, vc.toUnit, vc.scaleFactor) : range.stop}`;
-  if (range.stopunbounded)
-    return `${x} ${range.startinclusive ? "&ge;" : "&gt;"} ${vc ? convertUnits(range.start, vc.fromUnit, vc.toUnit, vc.scaleFactor) : range.start}`;
-  let startName, stopName;
-  if (vc) {
-    startName = convertUnits(range.start, vc.fromUnit, vc.toUnit, vc.scaleFactor);
-    stopName = convertUnits(range.stop, vc.fromUnit, vc.toUnit, vc.scaleFactor);
-  } else {
-    ;
-    [startName, stopName] = niceNumLabels([range.start, range.stop]);
-  }
-  return `${startName} 
-			${range.startinclusive ? "&le;" : "&lt;"}
-			${x}
-			${range.stopinclusive ? "&le;" : "&lt;"}
-			${stopName}`;
-}
-function getSelectRemovePos(j, tvs) {
-  return j - tvs.ranges.slice(0, j).filter((a) => a.start || a.stop).length;
-}
-async function fillMenu(self, div, tvs) {
-  const num_parent_div = div.append("div");
-  self.num_obj = {};
-  self.num_obj.num_div = num_parent_div.append("div").attr("class", "num_div").style("padding", "5px").style("color", "#000");
-  self.num_obj.plot_size = {
-    width: 450,
-    height: 100,
-    xpad: 10,
-    ypad: 20,
-    radius: 8
-  };
-  if (typeof self.opts.vocabApi.getViolinBox == "function") {
-    try {
-      const data = await self.opts.vocabApi.getViolinBox(
-        {
-          plotType: "violin",
-          tw: { term: tvs.term, q: { mode: "continuous" } },
-          // must supply this filter and override state filter in function, so the density plot will not be limited to range defined by current numeric tvs but will show whole range
-          filter: self.filter,
-          svgw: self.num_obj.plot_size.width,
-          radius: self.num_obj.plot_size.radius
-        },
-        self.opts.getCategoriesArguments
-      );
-      if (data.error) throw data.error;
-      if (data.max === null && data.min === null) {
-        throw `No data available under current filter conditions.`;
-      }
-      self.num_obj.density_data = data;
-    } catch (err) {
-      throw err;
-    }
-  } else {
-    self.num_obj.density_data = {};
-  }
-  if (self.num_obj.density_data.error) throw self.num_obj.density_data.error;
-  if (!self.num_obj.density_data.charts?.[""]?.plots?.[0]?.density?.bins) {
-    addRangeTableNoDensity(self, tvs);
-    return;
-  }
-  self.vr = new violinRenderer({
-    holder: self.num_obj.num_div,
-    rd: self.num_obj.density_data,
-    width: self.num_obj.plot_size.width,
-    radius: self.num_obj.plot_size.radius,
-    height: self.num_obj.plot_size.height,
-    // axis ticks are labeled in the term's user-facing unit, e.g. years and not days
-    scaleFactor: getValueConversionFactor(tvs.term)
-  });
-  self.vr.render();
-  self.num_obj.svg = self.vr.svg;
-  self.num_obj.range_table = self.num_obj.num_div.append("table").style("table-layout", "fixed").style("border-collapse", "collapse");
-  const ranges = [];
-  for (const [index, range] of tvs.ranges.entries()) {
-    range.index = index;
-    ranges.push(range);
-  }
-  self.num_obj.brush_g = self.vr.brushG.attr("class", "brush_g");
-  self.num_obj.xscale = self.vr.axisScale;
-  self.num_obj.ranges = ranges;
-  self.num_obj.brushes = [];
-  addBrushes(self);
-  addRangeTable(self);
-  if (!ranges.length) {
-    const callback = () => addRangeTable(self);
-    addNewBrush(self, "center", callback);
-  }
-  self.num_obj.brushes.forEach((brush) => brush.init());
-  await showCheckList_numeric(self, tvs, div);
-}
-function setTvsDefaults(tvs) {
-  if (!tvs.ranges) tvs.ranges = [];
-}
-function addRangeTableNoDensity(self, tvs) {
-  const termrange = tvs.term.range || {};
-  const range = tvs.ranges && tvs.ranges[0] ? tvs.ranges[0] : termrange;
-  range.min = "min" in tvs.term ? tvs.term.min : null;
-  range.max = "max" in tvs.term ? tvs.term.max : null;
-  const num_div = self.num_obj.num_div;
-  num_div.selectAll("*").remove();
-  const brush = {};
-  const holder = num_div.append("div").style("padding-left", "5px");
-  const rangeRow = holder.append("div").style("display", "flex").style("align-items", "center").style("column-gap", "5px");
-  const rangeLabel = rangeRow.append("span");
-  brush.equation_div = rangeRow.append("div");
-  brush.rangeInput = new NumericRangeInput(brush.equation_div, range, () => {
-  }, {
-    width: "125px",
-    scaleFactor: getValueConversionFactor(tvs.term)
-  });
-  const mafFilterMode = self.opts.isMafFilter ? tvs.term.mafFilterMode || "maf" : null;
-  if (mafFilterMode == "maf") {
-    rangeLabel.text("MAF Range (0-1)");
-    const depthRow = holder.append("div").style("display", "flex").style("align-items", "center").style("column-gap", "5px").style("margin-top", "5px");
-    depthRow.append("span").text("Minimum Total Depth");
-    brush.depthInput = depthRow.append("input").attr("type", "number").attr("min", 1).attr("step", 1).style("width", "125px").property("value", tvs.minAllelicDepth);
-    brush.apply_btn = addApplyButton(holder.append("div").style("margin-top", "10px"));
-  } else if (mafFilterMode == "totalDepth" || mafFilterMode == "altDepth") {
-    rangeLabel.text(mafFilterMode == "totalDepth" ? "Total Depth" : "Alt Allele Depth");
-    brush.apply_btn = addApplyButton(rangeRow);
-  } else {
-    rangeLabel.text("Range");
-    brush.apply_btn = addApplyButton(rangeRow);
-  }
-  function addApplyButton(holder2) {
-    return holder2.append("button").text("Apply").on("click", clickApply);
-  }
-  function clickApply() {
-    const r = brush.rangeInput.getRange();
-    if (!Number.isFinite(r.start) && !Number.isFinite(r.stop)) {
-      window.alert("Invalid range.");
-      return;
-    }
-    const new_tvs = { term: tvs.term, ranges: [r] };
-    if (brush.depthInput) {
-      const minAllelicDepth = Number(brush.depthInput.property("value"));
-      if (!Number.isFinite(minAllelicDepth)) {
-        window.alert("Minimum allelic depth must be a numeric value.");
-        return;
-      }
-      new_tvs.minAllelicDepth = Math.max(minAllelicDepth, 1);
-    }
-    self.dom.tip.hide();
-    self.opts.callback(new_tvs);
-  }
-}
-function addRangeTable(self) {
-  const brushes = self.num_obj.brushes;
-  const range_divs = self.num_obj.range_table.selectAll(".range_div").data(brushes);
-  range_divs.exit().each(function() {
-    select_default(this).style("opacity", 1).transition().duration(100).style("opacity", 0).remove();
-  });
-  range_divs.enter().append("tr").attr("class", "range_div").style("white-space", "nowrap").style("padding", "2px").transition().duration(200).each(function(brush, i) {
-    enterRange(self, this, brush, i);
-  });
-}
-function enterRange(self, tr, brush, i) {
-  if (!brush.range_tr) brush.range_tr = select_default(tr);
-  const range_tr = brush.range_tr;
-  const xscale = self.num_obj.xscale;
-  range_tr.append("td").style("margin-left", "10px").style("padding", "3px 10px").style("font-size", ".9em").text("Range " + (i + 1) + ": ");
-  brush.equation_td = range_tr.append("td").style("width", "150px");
-  brush.rangeInput = new NumericRangeInput(brush.equation_td, brush.range, apply, {
-    scaleFactor: getValueConversionFactor(self.tvs.term)
-  });
-  makeRangeButtons(self, brush);
-  if (i == 0) {
-    self.num_obj.range_table.append("tr").attr("class", "note_tr").append("td").attr("colspan", "3").append("div").style("font-size", ".8em").style("margin-left", "20px").style("font-style", "italic").style("color", "#888").html("Option 1: Drag the rectangle to select a range. Overlapping ranges will be merged.");
-  }
-  if (i == 0) {
-    self.num_obj.range_table.append("tr").attr("class", "note_tr").append("td").attr("colspan", "3").append("div").style("font-size", ".8em").style("margin-left", "20px").style("font-style", "italic").style("color", "#888").html(
-      `Option 2: Type in values to select a range.${self.tvs.term.valueConversion ? ` Values are in the unit of ${self.tvs.term.valueConversion.toUnit}.` : ""}`
-    );
-  }
-  async function apply(new_range) {
-    try {
-      brush.range = new_range;
-      const minvalue = self.num_obj.density_data.min;
-      const maxvalue = self.num_obj.density_data.max;
-      const start = new_range.value != void 0 ? new_range.value : new_range.start != void 0 ? new_range.start : minvalue;
-      const stop = new_range.value != void 0 ? new_range.value : new_range.stop != void 0 ? new_range.stop : maxvalue;
-      brush.elem.call(brush.d3brush).call(brush.d3brush.move, [start, stop].map(xscale));
-    } catch (e) {
-      window.alert(e);
-    }
-  }
-  function makeRangeButtons(self2, brush2) {
-    const buttons_td = brush2.range_tr.append("td");
-    const range = brush2.range;
-    brush2.apply_btn = buttons_td.append("button").style("margin-left", "10px").text("Apply").on("click", async () => {
-      self2.dom.tip.hide();
-      const new_range = brush2.rangeInput.parseRange();
-      const new_tvs = JSON.parse(JSON.stringify(self2.tvs));
-      delete new_tvs.groupset_label;
-      if (self2.num_obj.ranges.length > 1) new_tvs.ranges = mergeOverlapRanges(self2, new_range);
-      else new_tvs.ranges[range.index] = new_range;
-      try {
-        validateNumericTvs(new_tvs);
-        self2.opts.callback(new_tvs);
-      } catch (ex) {
-        alert(ex);
-      }
-    });
-    buttons_td.append("button").attr("class", "sja_filter_tag_btn sjpp_delete_btn").style("display", self2.num_obj.ranges.length > 1 ? "inline-block" : "none").style("margin-left", "10px").style("text-transform", "uppercase").text("Delete").on("click", async () => {
-      const new_tvs = JSON.parse(JSON.stringify(self2.tvs));
-      new_tvs.ranges.splice(range.index, 1);
-      self2.num_obj.ranges.pop();
-      self2.num_obj.brushes.pop();
-      self2.num_obj.num_div.select(".note_tr").remove();
-      addBrushes(self2);
-      addRangeTable(self2);
-      if (new_tvs.ranges.length) self2.opts.callback(new_tvs);
-    });
-  }
-}
-function mergeOverlapRanges(self, new_range) {
-  let ranges = JSON.parse(JSON.stringify(self.tvs.ranges));
-  let merged_flag = false;
-  for (const [i, range] of ranges.entries()) {
-    if (!range.value && new_range.index != i) {
-      if (new_range.start <= range.start && new_range.stop >= range.stop) {
-        range.start = new_range.start;
-        range.stop = new_range.stop;
-        merged_flag = true;
-      } else if (new_range.start <= range.stop && new_range.stop >= range.stop) {
-        range.stop = new_range.stop;
-        merged_flag = true;
-      } else if (new_range.stop >= range.start && new_range.start <= range.start) {
-        range.start = new_range.start;
-        merged_flag = true;
-      } else if (new_range.start >= range.start && new_range.stop <= range.stop) {
-        merged_flag = true;
-      } else if (new_range.startunbounded) {
-        if (new_range.stop > range.stop) {
-          range.stop = new_range.stop;
-        }
-        delete range.start;
-        range.startunbounded = true;
-        merged_flag = true;
-      } else if (new_range.stopunbounded) {
-        if (new_range.start < range.start) {
-          range.start = new_range.start;
-        }
-        delete range.stop;
-        range.stopunbounded = true;
-        merged_flag = true;
-      }
-    }
-  }
-  if (merged_flag) {
-    if (new_range.index <= ranges.length - 1) ranges.splice(new_range.index, 1);
-  } else {
-    ranges = JSON.parse(JSON.stringify(self.tvs.ranges));
-    if (new_range.index) ranges[new_range.index] = new_range;
-    else ranges.push(new_range);
-  }
-  return ranges;
-}
-async function showCheckList_numeric(self, tvs, div) {
-  if (!tvs.term.values) {
-    return;
-  }
-  const values = await self.opts.vocabApi.getNumericUncomputableCategories(tvs.term, self.filter);
-  const unannotated_cats = [];
-  const lst = values?.lst || values;
-  for (const cat of lst) {
-    const key = "key" in cat ? cat.key : cat.value;
-    if (!("key" in cat)) cat.key = key;
-    if (!("value" in cat)) cat.value = key;
-    if (key in tvs.term.values) {
-      cat.label = tvs.term.values[key].label;
-      unannotated_cats.push(cat);
-    }
-  }
-  const sortedVals = unannotated_cats.sort((a, b) => {
-    return b.samplecount - a.samplecount;
-  });
-  const unanno_div = div.append("div").style("padding", "5px").style("color", "#000");
-  const callback = (indexes) => {
-    try {
-      const new_tvs = JSON.parse(JSON.stringify(tvs));
-      delete new_tvs.groupset_label;
-      new_tvs.ranges = [
-        ...new_tvs.ranges.filter((r) => !("value" in r)),
-        ...indexes.map((i) => ({ value: sortedVals[i].value, label: sortedVals[i].label }))
-      ];
-      self.dom.tip.hide();
-      if (new_tvs.ranges.length == 0) throw "select at least one range or category";
-      if (JSON.parse(JSON.stringify(tvs) != new_tvs)) {
-        try {
-          validateNumericTvs(new_tvs);
-        } catch (e) {
-          window.alert(e);
-          return;
-        }
-        self.opts.callback(new_tvs);
-      }
-    } catch (e) {
-      window.alert(e);
-    }
-  };
-  const values_table = self.makeValueTable(unanno_div, tvs, sortedVals, callback).node();
-}
-function validateNumericTvs(tvs) {
-  if (!tvs.term) throw "tvs.term is not defined";
-  if (!tvs.ranges) throw `.values[] missing for a term ${tvs.term.name}`;
-  if (!Array.isArray(tvs.ranges)) throw `.values[] is not an array for a term ${tvs.term.name}`;
-  if (!tvs.ranges.length) throw `no categories selected for ${tvs.term.name}`;
-  for (const range of tvs.ranges) {
-    if (range.value != void 0) {
-      if (!range.label) throw `.label missing for special category for a term ${tvs.term.name}`;
-    } else {
-      if (range.startunbounded) {
-        if (range.stopunbounded) throw `both start & stop are unbounded for a term ${tvs.term.name}`;
-        if (!Number.isFinite(range.stop)) throw `.stop undefined when start is unbounded for a term ${tvs.term.name}`;
-      } else if (range.stopunbounded) {
-        if (!Number.isFinite(range.start)) throw `.start undefined when stop is unbounded for a term ${tvs.term.name}`;
-      } else {
-        if (!Number.isFinite(range.start))
-          throw `.start undefined when start is not unbounded for a term ${tvs.term.name}`;
-        if (!Number.isFinite(range.stop)) throw `.stop undefined when stop is not unbounded for a term ${tvs.term.name}`;
-        if (range.start >= range.stop) throw `.start is not lower than stop for a term ${tvs.term.name}`;
-      }
-    }
-  }
-}
-
-export {
-  handler,
-  format_val_text
-};
-//# sourceMappingURL=chunk-SYPSS3JQ.js.map