@sjcrh/proteinpaint-client 2.203.0 → 2.203.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (884) hide show
  1. package/dist/2dmaf-6CEBP4SA.js +1366 -0
  2. package/dist/AIProjectAdmin-2CKKFC3A.js +951 -0
  3. package/dist/AggregateMatrix-5TBUMFE5.js +665 -0
  4. package/dist/AppHeader-5YBPWF44.js +829 -0
  5. package/dist/BoxPlot-UOJS5SJV.js +1210 -0
  6. package/dist/CorrelationVolcano-KX6JPZMT.js +613 -0
  7. package/dist/Cuminc-TLOOLZWR.js +1208 -0
  8. package/dist/DE-HUQLQ2Z3.js +87 -0
  9. package/dist/DEinput-WWUISAF2.js +404 -0
  10. package/dist/DifferentialAnalysis-6DTAGCEY.js +237 -0
  11. package/dist/Disco-P6ZLPYLF.js +3388 -0
  12. package/dist/Disco.UI-WGTMAFK2.js +242 -0
  13. package/dist/DmrPlot-3FRU5KUK.js +636 -0
  14. package/dist/GB-NWOBARL3.js +1390 -0
  15. package/dist/GSEA-DEEUAAMI.js +850 -0
  16. package/dist/GeneExpInput-6QWGEAFV.js +361 -0
  17. package/dist/Geomap-6HT2B7RH.js +83 -0
  18. package/dist/HicApp-PCNOUULF.js +2244 -0
  19. package/dist/IDCViewer-H3QPXVM3.js +10811 -0
  20. package/dist/NumBinaryEditor-IU6OLMKN.js +278 -0
  21. package/dist/NumBinaryEditor.unit.spec-YUPUILIV.js +311 -0
  22. package/dist/NumContEditor-KFDA76QN.js +104 -0
  23. package/dist/NumContEditor.unit.spec-QBOT5QHU.js +163 -0
  24. package/dist/NumCustomBinEditor-EOSTEXLB.js +32 -0
  25. package/dist/NumCustomBinEditor.unit.spec-B46XWFYH.js +396 -0
  26. package/dist/NumDiscreteEditor-Y4EAADXC.js +169 -0
  27. package/dist/NumDiscreteEditor.unit.spec-SJGHLWSM.js +232 -0
  28. package/dist/NumRegularBinEditor-3BNG7DIN.js +32 -0
  29. package/dist/NumRegularBinEditor.unit.spec-KM45QXXG.js +277 -0
  30. package/dist/NumSplineEditor-K4KPDC4S.js +209 -0
  31. package/dist/NumSplineEditor.unit.spec-TKQP5XTS.js +223 -0
  32. package/dist/NumericDensity-Z6JFVN3D.js +32 -0
  33. package/dist/NumericDensity.unit.spec-YEYBVLEP.js +417 -0
  34. package/dist/NumericHandler-ITT6HMPN.js +33 -0
  35. package/dist/NumericHandler.unit.spec-QVONMXY4.js +213 -0
  36. package/dist/ProteomeInput-PRS3DEMZ.js +387 -0
  37. package/dist/Regression-LJJJBBT6.js +1413 -0
  38. package/dist/Regression-LJJJBBT6.js.map +7 -0
  39. package/dist/RunChart2-AMM2JFF5.js +749 -0
  40. package/dist/SC-F7IE66VZ.js +1106 -0
  41. package/dist/Violin-RJ6OJZ4F.js +1073 -0
  42. package/dist/Volcano-BJA5HN5Y.js +1414 -0
  43. package/dist/WSIViewer-RJZGRUIR.js +26194 -0
  44. package/dist/Wsi-DXP6KOQA.js +232 -0
  45. package/dist/WsiSamplesPlot-2IAWV2B6.js +159 -0
  46. package/dist/adSandbox-RGWOIV3W.js +32 -0
  47. package/dist/animatedBubbleChart-J4Q2NAEW.js +546 -0
  48. package/dist/app-3QXNR4VG.js +31 -0
  49. package/dist/app-B4B7YNP3.js +41 -0
  50. package/dist/app.js +12 -12
  51. package/dist/bam-LRUMN45P.js +875 -0
  52. package/dist/barchart-L2G6GEHK.js +41 -0
  53. package/dist/barchart2-DWNVAZAJ.js +308 -0
  54. package/dist/block-TVEVAXNP.js +6248 -0
  55. package/dist/block.init-YOHAKPRI.js +32 -0
  56. package/dist/block.mds.expressionrank-PU6JH4W5.js +353 -0
  57. package/dist/block.mds.geneboxplot-WYYFDNE3.js +822 -0
  58. package/dist/block.mds.junction-4WCTL7Y4.js +1538 -0
  59. package/dist/block.mds.svcnv-MR3VCYUW.js +6795 -0
  60. package/dist/block.svg-LR3Y4ZO7.js +158 -0
  61. package/dist/block.tk.aicheck-A5AWKJZI.js +277 -0
  62. package/dist/block.tk.ase-AQBBAQEH.js +359 -0
  63. package/dist/block.tk.bam-QBTA2O3V.js +1900 -0
  64. package/dist/block.tk.bedgraphdot-4ALZG2MY.js +378 -0
  65. package/dist/block.tk.bigwig.ui-32W6XW37.js +205 -0
  66. package/dist/block.tk.hicstraw-PKBHBAG2.js +817 -0
  67. package/dist/block.tk.junction-AO5CXUCU.js +2357 -0
  68. package/dist/block.tk.junction.textmatrixui-RORVUIPI.js +193 -0
  69. package/dist/block.tk.ld-TNBSR4FT.js +93 -0
  70. package/dist/block.tk.menu-QDJO54J5.js +1023 -0
  71. package/dist/block.tk.pgv-6222WWYR.js +937 -0
  72. package/dist/brainImaging-2TPE7MXB.js +426 -0
  73. package/dist/brainImaging-2TPE7MXB.js.map +7 -0
  74. package/dist/brainRegions-KTFH6DE2.js +215 -0
  75. package/dist/bubbleHeatmap-LNXZLFY6.js +377 -0
  76. package/dist/cellTypeBubbleHeatmap-SRHUNX3S.js +277 -0
  77. package/dist/chunk-3TXVDBGN.js +626 -0
  78. package/dist/chunk-4HLHKBHP.js +274 -0
  79. package/dist/chunk-5GG7Q2ZG.js +397 -0
  80. package/dist/chunk-5HVAVJKW.js +518 -0
  81. package/dist/chunk-5HVAVJKW.js.map +7 -0
  82. package/dist/chunk-5PMFCQKC.js +98 -0
  83. package/dist/chunk-67URJYN7.js +84 -0
  84. package/dist/chunk-67URJYN7.js.map +7 -0
  85. package/dist/chunk-6AKSOLBX.js +5071 -0
  86. package/dist/chunk-6AKSOLBX.js.map +7 -0
  87. package/dist/chunk-6X7PP7A4.js +2126 -0
  88. package/dist/chunk-A3EDLRUN.js +54 -0
  89. package/dist/chunk-ACXFPMJP.js +14 -0
  90. package/dist/chunk-ASRW3UJ5.js +102 -0
  91. package/dist/chunk-BBILSUDX.js +176 -0
  92. package/dist/chunk-BOWI37X2.js +100 -0
  93. package/dist/chunk-BVA26EFK.js +368 -0
  94. package/dist/chunk-D5J57ENI.js +797 -0
  95. package/dist/chunk-D5PX2UDG.js +23878 -0
  96. package/dist/chunk-D5PX2UDG.js.map +7 -0
  97. package/dist/chunk-DAGONMWK.js +261 -0
  98. package/dist/chunk-DAGONMWK.js.map +7 -0
  99. package/dist/chunk-DXLO4OAB.js +357 -0
  100. package/dist/chunk-DXLO4OAB.js.map +7 -0
  101. package/dist/chunk-E5BFGDLA.js +292 -0
  102. package/dist/chunk-ECISCOPF.js +134 -0
  103. package/dist/chunk-ECLUUJVE.js +158 -0
  104. package/dist/chunk-EGDQ5I54.js +272 -0
  105. package/dist/chunk-ELNVTA7O.js +56 -0
  106. package/dist/chunk-EO6M3LY3.js +339 -0
  107. package/dist/chunk-EO6M3LY3.js.map +7 -0
  108. package/dist/chunk-F4PMOAQK.js +494 -0
  109. package/dist/chunk-FISQTHD4.js +2327 -0
  110. package/dist/chunk-FXT2XM4E.js +1337 -0
  111. package/dist/chunk-FXT2XM4E.js.map +7 -0
  112. package/dist/chunk-HIWTGMTE.js +1721 -0
  113. package/dist/chunk-HIWTGMTE.js.map +7 -0
  114. package/dist/chunk-HL6GJIOH.js +1254 -0
  115. package/dist/chunk-IGZAOCTU.js +55 -0
  116. package/dist/chunk-JMDJI7KM.js +6360 -0
  117. package/dist/chunk-JQVA264Z.js +49 -0
  118. package/dist/chunk-JRF7SRLB.js +2784 -0
  119. package/dist/chunk-KLWSW6CC.js +203 -0
  120. package/dist/chunk-KNNSOOTG.js +194 -0
  121. package/dist/chunk-KTPXQH2N.js +170 -0
  122. package/dist/chunk-LGKXSWY4.js +276 -0
  123. package/dist/chunk-LP2GIXVK.js +4274 -0
  124. package/dist/chunk-M2ZZL5EV.js +2669 -0
  125. package/dist/chunk-M2ZZL5EV.js.map +7 -0
  126. package/dist/chunk-MBHERRJR.js +302 -0
  127. package/dist/chunk-MLYQDJUQ.js +480 -0
  128. package/dist/chunk-NBGDLLMX.js +446 -0
  129. package/dist/chunk-OPMMU6DQ.js +183 -0
  130. package/dist/chunk-OPMMU6DQ.js.map +7 -0
  131. package/dist/chunk-P3JEXVBT.js +50 -0
  132. package/dist/chunk-PZPPJY4K.js +34 -0
  133. package/dist/chunk-Q6JF4ZLT.js +141 -0
  134. package/dist/chunk-QF5IH7PC.js +263 -0
  135. package/dist/chunk-QJ6SO7CF.js +465 -0
  136. package/dist/chunk-QQUOVIOM.js +2899 -0
  137. package/dist/chunk-R3OBOAOF.js +240 -0
  138. package/dist/chunk-SNCZRDS5.js +557 -0
  139. package/dist/chunk-SNCZRDS5.js.map +7 -0
  140. package/dist/chunk-SPDNUC76.js +70 -0
  141. package/dist/chunk-T3663ZQL.js +37 -0
  142. package/dist/chunk-TSK4ZTFK.js +340 -0
  143. package/dist/chunk-USW6WRDZ.js +217 -0
  144. package/dist/chunk-WBMYHNKH.js +299 -0
  145. package/dist/chunk-X46LAU4Q.js +187 -0
  146. package/dist/chunk-XE6E526E.js +129 -0
  147. package/dist/chunk-XWCWBHLB.js +123 -0
  148. package/dist/chunk-YCECQV3T.js +160 -0
  149. package/dist/chunk-YROOKO3Q.js +1954 -0
  150. package/dist/chunk-YROOKO3Q.js.map +7 -0
  151. package/dist/chunk-Z4NADGZX.js +243 -0
  152. package/dist/chunk-Z53KOPRJ.js +102 -0
  153. package/dist/cohort-U7M6Q2UX.js +69 -0
  154. package/dist/condition-EGAV2PMJ.js +326 -0
  155. package/dist/controls-PTMYWUZV.js +33 -0
  156. package/dist/controls.config-DOA6PTP2.js +33 -0
  157. package/dist/correlation-Y3EL6GB7.js +94 -0
  158. package/dist/customdata.inputui-4NDDG6FL.js +283 -0
  159. package/dist/dataDownload-EQGUAOK2.js +328 -0
  160. package/dist/databrowser.ui-ABGOJUWQ.js +424 -0
  161. package/dist/dictionary-YOLLEDE5.js +112 -0
  162. package/dist/dnaMethylation-JZT63UHO.js +32 -0
  163. package/dist/dnaMethylation.integration.spec-EATCABJW.js +197 -0
  164. package/dist/dofetch-YNBIUFV5.js +48 -0
  165. package/dist/e2pca-RD6COCRL.js +343 -0
  166. package/dist/ep-BAI7WUET.js +1248 -0
  167. package/dist/expclust.gdc.spec-LKV2CQA5.js +301 -0
  168. package/dist/facet-X3SXQIAC.js +518 -0
  169. package/dist/gb-K324K7XB.js +80 -0
  170. package/dist/geneExpClustering-BJD5U3KG.js +243 -0
  171. package/dist/geneExpression-2TK3XLZ5.js +310 -0
  172. package/dist/geneExpression-F6NRTHZ4.js +32 -0
  173. package/dist/geneExpression.unit.spec-IFZN3J6A.js +96 -0
  174. package/dist/geneORA-DUEP735U.js +272 -0
  175. package/dist/geneRanking-LURDNT7L.js +547 -0
  176. package/dist/geneVariant-EAVCWQAZ.js +35 -0
  177. package/dist/geneVariant-IZTFYAG6.js +284 -0
  178. package/dist/geneVariant-IZTFYAG6.js.map +7 -0
  179. package/dist/geneVariant.integration.spec-LHL4ERFO.js +192 -0
  180. package/dist/genefusion.ui-4T5R7DT7.js +302 -0
  181. package/dist/geneset-3PWXPBG2.js +202 -0
  182. package/dist/genomeBrowser.spec-5SEN7R2P.js +275 -0
  183. package/dist/grin2-EXBG7TMS.js +1136 -0
  184. package/dist/grin2-XIXVFVWO.js +69 -0
  185. package/dist/hierCluster-5XQIWXAY.js +57 -0
  186. package/dist/hierCluster-I4TAQWPF.js +53 -0
  187. package/dist/hierCluster.config-T7HVAWES.js +34 -0
  188. package/dist/hierCluster.integration.spec-XWX43K4D.js +482 -0
  189. package/dist/hierCluster.interactivity-MYIDHFSL.js +48 -0
  190. package/dist/hierCluster.renderers-YRXA5ZUK.js +19 -0
  191. package/dist/imagePlot-4JQB6JUG.js +155 -0
  192. package/dist/importPlot-D3MXCCLN.js +8 -0
  193. package/dist/isoformExpression-WNGGUVIZ.js +34 -0
  194. package/dist/isoformExpression.unit.spec-NVJ5TIKM.js +236 -0
  195. package/dist/junction-O7N57JE3.js +35 -0
  196. package/dist/junction.unit.spec-Z63DRTRR.js +181 -0
  197. package/dist/launch.adhoc-MBDRXD3B.js +36 -0
  198. package/dist/leftlabel.sample-IG6FOQ26.js +257 -0
  199. package/dist/lollipop-ZUYBLPGN.js +165 -0
  200. package/dist/maf-QOS5LURG.js +454 -0
  201. package/dist/maftimeline-FEHP2J55.js +586 -0
  202. package/dist/matrix-BG4J4RXA.js +57 -0
  203. package/dist/matrix-PX4LWTGN.js +52 -0
  204. package/dist/matrix.cells-PTIDQVCI.js +26 -0
  205. package/dist/matrix.config-NHW7BLIE.js +35 -0
  206. package/dist/matrix.data-FMIQRXOA.js +23 -0
  207. package/dist/matrix.dom-4S2UYJOU.js +11 -0
  208. package/dist/matrix.groups-QMID5XAO.js +25 -0
  209. package/dist/matrix.integration.spec-H6T7KP5R.js +3066 -0
  210. package/dist/matrix.interactivity-WQUO25HB.js +36 -0
  211. package/dist/matrix.layout-CTPVZZ34.js +38 -0
  212. package/dist/matrix.legend-K6EYUN6L.js +20 -0
  213. package/dist/matrix.renderers-5DIAUY6R.js +32 -0
  214. package/dist/matrix.serieses-LRMN2J52.js +19 -0
  215. package/dist/matrix.sort-RGAGEA6Z.js +25 -0
  216. package/dist/matrix.sort.unit.spec-RGICZZJL.js +466 -0
  217. package/dist/matrix.sorterUi.unit.spec-45QPEGWE.js +336 -0
  218. package/dist/matrix.unit.spec-TMRZM5DU.js +148 -0
  219. package/dist/matrix.unit.spec-TMRZM5DU.js.map +7 -0
  220. package/dist/mavb-VEIVB62L.js +726 -0
  221. package/dist/mds.fimo-BG4LTWFB.js +512 -0
  222. package/dist/mds.samplescatterplot-PWADJZ2J.js +1544 -0
  223. package/dist/mds.survivalplot-BX4HZ23K.js +476 -0
  224. package/dist/multivalue-OZALSBFW.js +82 -0
  225. package/dist/numericDictTermCluster-7PGJ7KV4.js +63 -0
  226. package/dist/oncomatrix-Q2EQZPLS.js +289 -0
  227. package/dist/oncomatrix.spec-YEQOQRPW.js +442 -0
  228. package/dist/plot.2dvaf-NJSB3HNH.js +371 -0
  229. package/dist/plot.app-AEUR6XGI.js +35 -0
  230. package/dist/plot.barplot-OXN2P5KL.js +96 -0
  231. package/dist/plot.boxplot-2KHEVVFE.js +145 -0
  232. package/dist/plot.brainImaging-JWDX4BZG.js +51 -0
  233. package/dist/plot.disco-LUFC5GGC.js +99 -0
  234. package/dist/plot.ssgq-FMM3IRNA.js +133 -0
  235. package/dist/plot.vaf2cov-K5TAQUC5.js +252 -0
  236. package/dist/plot.wsi-CNQCNZ4Z.js +36 -0
  237. package/dist/polar2-AB6SVYRS.js +231 -0
  238. package/dist/profileForms-AIEHZ4GC.js +933 -0
  239. package/dist/profilePlot-PZDFGXKZ.js +48 -0
  240. package/dist/proteinView-7GWHQYXC.js +1561 -0
  241. package/dist/proteomeCohortCompare-BTN4HHFL.js +779 -0
  242. package/dist/proteomeCohortCompare-BTN4HHFL.js.map +7 -0
  243. package/dist/pseudbulk.unit.spec-NFT4VNTI.js +85 -0
  244. package/dist/pseudobulk-WDGWTXW4.js +34 -0
  245. package/dist/qualitative-PZYJENE7.js +37 -0
  246. package/dist/radar2-QHRGH3YS.js +326 -0
  247. package/dist/radarFacility2-2JD26FL6.js +334 -0
  248. package/dist/render-YA4Z56LT.js +32 -0
  249. package/dist/report-2NUKFJTF.js +216 -0
  250. package/dist/sampleView-2XVPJTVR.js +42 -0
  251. package/dist/samplelst-DMILFDT5.js +105 -0
  252. package/dist/samplematrix-LYA5XTUM.js +2192 -0
  253. package/dist/sc-CM2C34MN.js +80 -0
  254. package/dist/scatter-C3CH3HTF.js +879 -0
  255. package/dist/scatter-GO6LV6NY.js +87 -0
  256. package/dist/selectGenomeWithTklst-5C7UBTGZ.js +128 -0
  257. package/dist/singleCellCellType-EZYESBVZ.js +32 -0
  258. package/dist/singleCellCellType.unit.spec-DB6FM4XR.js +153 -0
  259. package/dist/singleCellGeneExpression-DZLEFPW4.js +32 -0
  260. package/dist/singleCellGeneExpression.unit.spec-ZTBK3V43.js +147 -0
  261. package/dist/singleCellPlot-VF4TZ4FT.js +48 -0
  262. package/dist/singlecell-2MHROPBN.js +1565 -0
  263. package/dist/singlecell-GPAFNOUZ.js +80 -0
  264. package/dist/snp-K4EAEVW4.js +32 -0
  265. package/dist/snp.unit.spec-BUVQLVOY.js +170 -0
  266. package/dist/snplocus-GEVISN6Z.js +202 -0
  267. package/dist/spliceevent.a53ss.diagram-5UPWNAZF.js +145 -0
  268. package/dist/spliceevent.exonskip.diagram-7TKAQURC.js +277 -0
  269. package/dist/spliceevent.noeventdiagram-CDXZLR3Z.js +454 -0
  270. package/dist/ssGSEA-NMCJUQXT.js +32 -0
  271. package/dist/ssGSEA.unit.spec-3FQALTPQ.js +82 -0
  272. package/dist/stattable-2RXQPWKK.js +116 -0
  273. package/dist/studyCatalog-WWFCTTX7.js +377 -0
  274. package/dist/studyCatalog-WWFCTTX7.js.map +7 -0
  275. package/dist/summarizeCnvGeneexp-4BQS5AFM.js +157 -0
  276. package/dist/summarizeGeneexpSurvival-HTBZQFB5.js +104 -0
  277. package/dist/summarizeMutationCnv-XUWZGPCM.js +158 -0
  278. package/dist/summarizeMutationDiagnosis-QUJX42TO.js +34 -0
  279. package/dist/summarizeMutationSurvival-3R47TTR6.js +93 -0
  280. package/dist/summary-6UUB63QR.js +41 -0
  281. package/dist/summary.integration.spec-JJDE6SRV.js +408 -0
  282. package/dist/summaryInput-JG4AW6FW.js +225 -0
  283. package/dist/sunburst-YKB42RZX.js +277 -0
  284. package/dist/survival-3IFFTDQA.js +52 -0
  285. package/dist/survival-HOFNJENX.js +1236 -0
  286. package/dist/survival.integration.spec-7YZYKEUW.js +612 -0
  287. package/dist/survival.integration.spec-7YZYKEUW.js.map +7 -0
  288. package/dist/svgraph-WFEY4ZIZ.js +1381 -0
  289. package/dist/svmr-44EIX7YD.js +3836 -0
  290. package/dist/table-6MKVJUNC.js +196 -0
  291. package/dist/termCollection-6JBVQL6Y.js +251 -0
  292. package/dist/termCollection-TTELZVC5.js +32 -0
  293. package/dist/termCollection.unit.spec-6Z7X646L.js +298 -0
  294. package/dist/termCollectionFractionSelection-5DVIJBM5.js +41 -0
  295. package/dist/termCollectionFractionSelection.unit.spec-3HIM5BIF.js +187 -0
  296. package/dist/tk-HSYWJCGQ.js +40 -0
  297. package/dist/tk-PNOVG2XS.js +1120 -0
  298. package/dist/tp.ui-COBBSUPB.js +1453 -0
  299. package/dist/tvs.dt-35AKURFI.js +33 -0
  300. package/dist/tvs.dtcnv.categorical-3EHXYROL.js +34 -0
  301. package/dist/tvs.dtcnv.continuous-AXQ2GU6S.js +66 -0
  302. package/dist/tvs.dtfusion-PLJIMPNX.js +34 -0
  303. package/dist/tvs.dtitd-JS6RFBV5.js +34 -0
  304. package/dist/tvs.dtsnvindel-MDEM5MPT.js +34 -0
  305. package/dist/tvs.dtsv-OU756YLO.js +34 -0
  306. package/dist/tvs.samplelst-5NDICES4.js +98 -0
  307. package/dist/tvs.termCollection-5URPDPH6.js +123 -0
  308. package/dist/vocabulary-CHCVMPK5.js +35 -0
  309. package/dist/wsi.direct-JSKV4H4X.js +75 -0
  310. package/package.json +4 -4
  311. package/dist/2dmaf-I4HBWRNQ.js +0 -1366
  312. package/dist/AIProjectAdmin-SZYSG7HR.js +0 -951
  313. package/dist/AggregateMatrix-U7HHALFR.js +0 -665
  314. package/dist/AppHeader-O4RBZQZF.js +0 -829
  315. package/dist/BoxPlot-NOXWAGX6.js +0 -1210
  316. package/dist/CorrelationVolcano-IJ5UT6N5.js +0 -613
  317. package/dist/Cuminc-NGUDAOAD.js +0 -1208
  318. package/dist/DE-MIAHOI5J.js +0 -87
  319. package/dist/DEinput-FYBSL2ER.js +0 -404
  320. package/dist/DifferentialAnalysis-I6S5YQXY.js +0 -237
  321. package/dist/Disco-VLUBOZDC.js +0 -3388
  322. package/dist/Disco.UI-QQYWQEW7.js +0 -242
  323. package/dist/DmrPlot-DFOBEN7A.js +0 -636
  324. package/dist/GB-5FSXJMEZ.js +0 -1390
  325. package/dist/GSEA-JISHQOVY.js +0 -850
  326. package/dist/GeneExpInput-5YEX22VD.js +0 -361
  327. package/dist/Geomap-YVF6YBK5.js +0 -83
  328. package/dist/HicApp-ZCMOOKTY.js +0 -2244
  329. package/dist/IDCViewer-5ZNTAEUG.js +0 -10811
  330. package/dist/NumBinaryEditor-BEF5YCKI.js +0 -278
  331. package/dist/NumBinaryEditor.unit.spec-GCYZGHB2.js +0 -311
  332. package/dist/NumContEditor-TUXPB6YJ.js +0 -104
  333. package/dist/NumContEditor.unit.spec-5CMHHWIP.js +0 -163
  334. package/dist/NumCustomBinEditor-HS7RSGFV.js +0 -32
  335. package/dist/NumCustomBinEditor.unit.spec-MM3JJXT4.js +0 -396
  336. package/dist/NumDiscreteEditor-ZL7PP6ZT.js +0 -169
  337. package/dist/NumDiscreteEditor.unit.spec-OEWX2KJC.js +0 -232
  338. package/dist/NumRegularBinEditor-YBXK7YV6.js +0 -32
  339. package/dist/NumRegularBinEditor.unit.spec-FVHN4J5L.js +0 -277
  340. package/dist/NumSplineEditor-VN4XBTTI.js +0 -209
  341. package/dist/NumSplineEditor.unit.spec-AI642DWP.js +0 -223
  342. package/dist/NumericDensity-2KTY7DGH.js +0 -32
  343. package/dist/NumericDensity.unit.spec-6EA72A24.js +0 -417
  344. package/dist/NumericHandler-62EN6AD3.js +0 -33
  345. package/dist/NumericHandler.unit.spec-FXOJ2L2L.js +0 -213
  346. package/dist/ProteomeInput-MBBDXO2Z.js +0 -387
  347. package/dist/Regression-OQETMZPL.js +0 -1408
  348. package/dist/Regression-OQETMZPL.js.map +0 -7
  349. package/dist/RunChart2-RHZFHH4M.js +0 -749
  350. package/dist/SC-FAQXOHO4.js +0 -1106
  351. package/dist/Violin-2A3ICNBP.js +0 -1073
  352. package/dist/Volcano-X5KGHLHZ.js +0 -1414
  353. package/dist/WSIViewer-F2SD6LLP.js +0 -26194
  354. package/dist/Wsi-KAFAC3Q5.js +0 -232
  355. package/dist/WsiSamplesPlot-VKPMLDZI.js +0 -159
  356. package/dist/adSandbox-QKG5EA23.js +0 -32
  357. package/dist/animatedBubbleChart-ES62XWMN.js +0 -546
  358. package/dist/app-2HLLOBTD.js +0 -41
  359. package/dist/app-GJL6K6V4.js +0 -31
  360. package/dist/bam-DCPAAVPX.js +0 -875
  361. package/dist/barchart-DCVGCEZO.js +0 -41
  362. package/dist/barchart2-5X57VSIN.js +0 -308
  363. package/dist/block-XYSUTBXJ.js +0 -6248
  364. package/dist/block.init-5B27QKPU.js +0 -32
  365. package/dist/block.mds.expressionrank-Z7BGGPZ7.js +0 -353
  366. package/dist/block.mds.geneboxplot-4U4UZH2J.js +0 -822
  367. package/dist/block.mds.junction-ZPCUEQZJ.js +0 -1538
  368. package/dist/block.mds.svcnv-OGGPBOL2.js +0 -6795
  369. package/dist/block.svg-BWGAMNDS.js +0 -158
  370. package/dist/block.tk.aicheck-XHHW7WST.js +0 -277
  371. package/dist/block.tk.ase-BZ2IL3CQ.js +0 -359
  372. package/dist/block.tk.bam-WRHOOWXN.js +0 -1900
  373. package/dist/block.tk.bedgraphdot-B536STRA.js +0 -378
  374. package/dist/block.tk.bigwig.ui-K5X3BSQC.js +0 -205
  375. package/dist/block.tk.hicstraw-OYOKZ45W.js +0 -817
  376. package/dist/block.tk.junction-S5JMMMR6.js +0 -2357
  377. package/dist/block.tk.junction.textmatrixui-OLZY5BYR.js +0 -193
  378. package/dist/block.tk.ld-KINDO5UU.js +0 -93
  379. package/dist/block.tk.menu-3FNBVZ7J.js +0 -1023
  380. package/dist/block.tk.pgv-UHDY3T4G.js +0 -937
  381. package/dist/brainImaging-KWFRX3XB.js +0 -422
  382. package/dist/brainImaging-KWFRX3XB.js.map +0 -7
  383. package/dist/brainRegions-YI7K4OVE.js +0 -215
  384. package/dist/bubbleHeatmap-EQ44CSG5.js +0 -377
  385. package/dist/cellTypeBubbleHeatmap-O3KL2YBF.js +0 -277
  386. package/dist/chunk-254KEDDH.js +0 -129
  387. package/dist/chunk-25RPYQRT.js +0 -203
  388. package/dist/chunk-2OEMKKLP.js +0 -272
  389. package/dist/chunk-34AV6DED.js +0 -299
  390. package/dist/chunk-3UOSDVFJ.js +0 -1710
  391. package/dist/chunk-3UOSDVFJ.js.map +0 -7
  392. package/dist/chunk-4GN3CSDT.js +0 -98
  393. package/dist/chunk-4KUGV44F.js +0 -397
  394. package/dist/chunk-4WF3XDQP.js +0 -220
  395. package/dist/chunk-4WF3XDQP.js.map +0 -7
  396. package/dist/chunk-55PGOBTR.js +0 -123
  397. package/dist/chunk-5RHE36DQ.js +0 -37
  398. package/dist/chunk-6456HESK.js +0 -160
  399. package/dist/chunk-6THPWBBU.js +0 -102
  400. package/dist/chunk-6ZLCBVJA.js +0 -54
  401. package/dist/chunk-7AYGTMED.js +0 -182
  402. package/dist/chunk-7AYGTMED.js.map +0 -7
  403. package/dist/chunk-7ROMS7YT.js +0 -626
  404. package/dist/chunk-7UFK4GVI.js +0 -263
  405. package/dist/chunk-7UFK4GVI.js.map +0 -7
  406. package/dist/chunk-ALXSSRGI.js +0 -263
  407. package/dist/chunk-AT7HWXMW.js +0 -302
  408. package/dist/chunk-AVR4LFOO.js +0 -194
  409. package/dist/chunk-BY5B5BM5.js +0 -170
  410. package/dist/chunk-BZ36NJHA.js +0 -797
  411. package/dist/chunk-BZKHE26Z.js +0 -340
  412. package/dist/chunk-CBRZIMNF.js +0 -217
  413. package/dist/chunk-CTO247UZ.js +0 -5069
  414. package/dist/chunk-CTO247UZ.js.map +0 -7
  415. package/dist/chunk-D27C6HZW.js +0 -50
  416. package/dist/chunk-D73PJ4WC.js +0 -512
  417. package/dist/chunk-D73PJ4WC.js.map +0 -7
  418. package/dist/chunk-DLXMO6EK.js +0 -494
  419. package/dist/chunk-EK7CQC3P.js +0 -100
  420. package/dist/chunk-FCMHDCMO.js +0 -56
  421. package/dist/chunk-GJFG2MML.js +0 -1254
  422. package/dist/chunk-GQQ4R6BI.js +0 -24060
  423. package/dist/chunk-GQQ4R6BI.js.map +0 -7
  424. package/dist/chunk-HENLCRVM.js +0 -2126
  425. package/dist/chunk-I56CSICA.js +0 -292
  426. package/dist/chunk-I5KBI5PC.js +0 -274
  427. package/dist/chunk-IHDVUZFC.js +0 -1947
  428. package/dist/chunk-IHDVUZFC.js.map +0 -7
  429. package/dist/chunk-IUA3PSTK.js +0 -6360
  430. package/dist/chunk-J3TIXBCS.js +0 -276
  431. package/dist/chunk-JJHMFHRC.js +0 -257
  432. package/dist/chunk-JJHMFHRC.js.map +0 -7
  433. package/dist/chunk-JPQSDB2H.js +0 -102
  434. package/dist/chunk-LIMDUEVX.js +0 -1336
  435. package/dist/chunk-LIMDUEVX.js.map +0 -7
  436. package/dist/chunk-MECQLU4J.js +0 -243
  437. package/dist/chunk-MEJMWIBD.js +0 -187
  438. package/dist/chunk-MT5MHYL3.js +0 -480
  439. package/dist/chunk-NVH5I6EP.js +0 -176
  440. package/dist/chunk-OGQMELRU.js +0 -14
  441. package/dist/chunk-PBRW6QLS.js +0 -4274
  442. package/dist/chunk-PPJMCBVT.js +0 -82
  443. package/dist/chunk-PPJMCBVT.js.map +0 -7
  444. package/dist/chunk-RRI3RX4A.js +0 -2669
  445. package/dist/chunk-RRI3RX4A.js.map +0 -7
  446. package/dist/chunk-S2D6GH6D.js +0 -465
  447. package/dist/chunk-SACNULB3.js +0 -368
  448. package/dist/chunk-SEJGXC2L.js +0 -141
  449. package/dist/chunk-TMZZ4Z7L.js +0 -34
  450. package/dist/chunk-TRWFL52W.js +0 -446
  451. package/dist/chunk-VP2FPPLA.js +0 -70
  452. package/dist/chunk-VTYMSJGY.js +0 -49
  453. package/dist/chunk-WEF6INPI.js +0 -2784
  454. package/dist/chunk-WO4CL5JL.js +0 -240
  455. package/dist/chunk-WVVH56ZU.js +0 -2327
  456. package/dist/chunk-WZTZJNSG.js +0 -2899
  457. package/dist/chunk-XPSUKXMF.js +0 -556
  458. package/dist/chunk-XPSUKXMF.js.map +0 -7
  459. package/dist/chunk-XXITHNR2.js +0 -134
  460. package/dist/chunk-YCLNEB4L.js +0 -158
  461. package/dist/chunk-ZPFN3CYR.js +0 -55
  462. package/dist/cohort-JCMVMOBQ.js +0 -69
  463. package/dist/condition-SHRWEMG7.js +0 -326
  464. package/dist/controls-EKIHLQS6.js +0 -33
  465. package/dist/controls.config-WSVX6UC6.js +0 -33
  466. package/dist/correlation-ALFFZLKD.js +0 -94
  467. package/dist/customdata.inputui-L2UAIU6I.js +0 -283
  468. package/dist/dataDownload-73N5364T.js +0 -328
  469. package/dist/databrowser.ui-NTOGXDYE.js +0 -424
  470. package/dist/dictionary-CUAU2X6Q.js +0 -112
  471. package/dist/dnaMethylation-AGWAGXVD.js +0 -32
  472. package/dist/dnaMethylation.integration.spec-K22XXOU4.js +0 -197
  473. package/dist/dofetch-BVJ77SP7.js +0 -48
  474. package/dist/e2pca-4HIJWLSC.js +0 -343
  475. package/dist/ep-U4RGH62P.js +0 -1248
  476. package/dist/expclust.gdc.spec-JJGGQDQK.js +0 -301
  477. package/dist/facet-NNUPVXCG.js +0 -518
  478. package/dist/gb-2MYXJEMY.js +0 -80
  479. package/dist/geneExpClustering-6ORRRH43.js +0 -243
  480. package/dist/geneExpression-4JVWKJWP.js +0 -310
  481. package/dist/geneExpression-MARWAIHW.js +0 -32
  482. package/dist/geneExpression.unit.spec-3CQTUSDK.js +0 -96
  483. package/dist/geneORA-M2L2YEX3.js +0 -272
  484. package/dist/geneRanking-S2B3LSTU.js +0 -547
  485. package/dist/geneVariant-D2ANGINP.js +0 -35
  486. package/dist/geneVariant-T4NG72OL.js +0 -33
  487. package/dist/geneVariant.integration.spec-62NJS7GD.js +0 -192
  488. package/dist/genefusion.ui-4ZZNKANU.js +0 -302
  489. package/dist/geneset-QCLFANPD.js +0 -202
  490. package/dist/genomeBrowser.spec-BV5M6JFN.js +0 -275
  491. package/dist/grin2-J4VDS2JT.js +0 -1136
  492. package/dist/grin2-K5G3N5XP.js +0 -69
  493. package/dist/hierCluster-FMK524WF.js +0 -57
  494. package/dist/hierCluster-XF7ZWVKD.js +0 -53
  495. package/dist/hierCluster.config-LYAQCO3L.js +0 -34
  496. package/dist/hierCluster.integration.spec-NSLTJBL4.js +0 -482
  497. package/dist/hierCluster.interactivity-VKAOR2DR.js +0 -48
  498. package/dist/hierCluster.renderers-6C5F7LRL.js +0 -19
  499. package/dist/imagePlot-IPTIFVLT.js +0 -155
  500. package/dist/importPlot-V3P6DCUR.js +0 -8
  501. package/dist/isoformExpression-6IIPJI4M.js +0 -34
  502. package/dist/isoformExpression.unit.spec-IYZWSLO5.js +0 -236
  503. package/dist/junction-E6FB2OP4.js +0 -35
  504. package/dist/junction.unit.spec-M4EN7KPG.js +0 -181
  505. package/dist/launch.adhoc-SU5L2YXN.js +0 -36
  506. package/dist/leftlabel.sample-5WTK5NBD.js +0 -257
  507. package/dist/lollipop-L64ZTEEX.js +0 -165
  508. package/dist/maf-QLNFANWO.js +0 -454
  509. package/dist/maftimeline-U7FMTMTV.js +0 -586
  510. package/dist/matrix-GFVK3PEB.js +0 -57
  511. package/dist/matrix-HFJQGPJJ.js +0 -52
  512. package/dist/matrix.cells-5JKTBI3X.js +0 -26
  513. package/dist/matrix.config-QPTQ22RR.js +0 -35
  514. package/dist/matrix.data-MXIUMSRR.js +0 -23
  515. package/dist/matrix.dom-ENBFB4CW.js +0 -11
  516. package/dist/matrix.groups-6DYTBVGR.js +0 -25
  517. package/dist/matrix.integration.spec-X4HM67TN.js +0 -3066
  518. package/dist/matrix.interactivity-QTB56LXE.js +0 -36
  519. package/dist/matrix.layout-VQAORIIH.js +0 -38
  520. package/dist/matrix.legend-SDJXYNHE.js +0 -20
  521. package/dist/matrix.renderers-6PMYIP2S.js +0 -32
  522. package/dist/matrix.serieses-WWY7474U.js +0 -19
  523. package/dist/matrix.sort-V46C2MAZ.js +0 -25
  524. package/dist/matrix.sort.unit.spec-3RM7V6CS.js +0 -466
  525. package/dist/matrix.sorterUi.unit.spec-YOV6FBRT.js +0 -336
  526. package/dist/mavb-PJA76T7F.js +0 -726
  527. package/dist/mds.fimo-GW7XPJGQ.js +0 -512
  528. package/dist/mds.samplescatterplot-ZAIEWPO4.js +0 -1544
  529. package/dist/mds.survivalplot-ETLLFDWR.js +0 -476
  530. package/dist/multivalue-AZPAQJQD.js +0 -82
  531. package/dist/numericDictTermCluster-KOJODGZT.js +0 -63
  532. package/dist/oncomatrix-2TRXETOJ.js +0 -289
  533. package/dist/oncomatrix.spec-DOVKLS24.js +0 -442
  534. package/dist/plot.2dvaf-RQN6QADW.js +0 -371
  535. package/dist/plot.app-MOIVGIS6.js +0 -35
  536. package/dist/plot.barplot-46QRWJOX.js +0 -96
  537. package/dist/plot.boxplot-54J4UWQX.js +0 -145
  538. package/dist/plot.brainImaging-Y32KQFLS.js +0 -51
  539. package/dist/plot.disco-4R5J7Z5S.js +0 -99
  540. package/dist/plot.ssgq-6LCKYRYD.js +0 -133
  541. package/dist/plot.vaf2cov-UCBH4NSC.js +0 -252
  542. package/dist/plot.wsi-DAC7NUQE.js +0 -36
  543. package/dist/polar2-JKV74QV5.js +0 -231
  544. package/dist/profileForms-VDYCFH4M.js +0 -933
  545. package/dist/profilePlot-PR3LVRYU.js +0 -48
  546. package/dist/proteinView-A3EM6OR5.js +0 -1561
  547. package/dist/proteomeCohortCompare-QGFEJTDQ.js +0 -793
  548. package/dist/proteomeCohortCompare-QGFEJTDQ.js.map +0 -7
  549. package/dist/pseudbulk.unit.spec-CUMTLAH7.js +0 -85
  550. package/dist/pseudobulk-5E5MSMU3.js +0 -34
  551. package/dist/qualitative-WPXUBISK.js +0 -37
  552. package/dist/radar2-A5OYMORS.js +0 -326
  553. package/dist/radarFacility2-4TPJB6M4.js +0 -334
  554. package/dist/render-XQBWWS33.js +0 -32
  555. package/dist/report-NCJOTYIC.js +0 -216
  556. package/dist/sampleView-2PUSMG4W.js +0 -42
  557. package/dist/samplelst-FV7BAUN5.js +0 -105
  558. package/dist/samplematrix-DFD3PNI4.js +0 -2192
  559. package/dist/sc-GIMTDVLG.js +0 -80
  560. package/dist/scatter-4GJ5HKUY.js +0 -879
  561. package/dist/scatter-P3ISZB3R.js +0 -87
  562. package/dist/selectGenomeWithTklst-ZZ4CEHDU.js +0 -128
  563. package/dist/singleCellCellType-CEERCVTR.js +0 -32
  564. package/dist/singleCellCellType.unit.spec-JNEIICK5.js +0 -153
  565. package/dist/singleCellGeneExpression-G5B7DDES.js +0 -32
  566. package/dist/singleCellGeneExpression.unit.spec-CGRZGY66.js +0 -147
  567. package/dist/singleCellPlot-US5KTHS4.js +0 -48
  568. package/dist/singlecell-IPTSIKNA.js +0 -1565
  569. package/dist/singlecell-VB4KLPJF.js +0 -80
  570. package/dist/snp-6V2SCCRN.js +0 -32
  571. package/dist/snp.unit.spec-Q537NGVG.js +0 -170
  572. package/dist/snplocus-BV6WJTVP.js +0 -202
  573. package/dist/spliceevent.a53ss.diagram-3BUQVK4Q.js +0 -145
  574. package/dist/spliceevent.exonskip.diagram-CQZ2DFQ5.js +0 -277
  575. package/dist/spliceevent.noeventdiagram-QAEPR6LD.js +0 -454
  576. package/dist/ssGSEA-XNI5S7AC.js +0 -32
  577. package/dist/ssGSEA.unit.spec-A337IMC7.js +0 -82
  578. package/dist/stattable-J4ZQKJFM.js +0 -116
  579. package/dist/studyCatalog-BJTJJGBC.js +0 -352
  580. package/dist/studyCatalog-BJTJJGBC.js.map +0 -7
  581. package/dist/summarizeCnvGeneexp-76UJXLA4.js +0 -157
  582. package/dist/summarizeGeneexpSurvival-ZUEHXA2R.js +0 -104
  583. package/dist/summarizeMutationCnv-EBCBVMG6.js +0 -158
  584. package/dist/summarizeMutationDiagnosis-VLFI2ZIZ.js +0 -34
  585. package/dist/summarizeMutationSurvival-QRFMJLLO.js +0 -93
  586. package/dist/summary-U3YKEMZC.js +0 -41
  587. package/dist/summary.integration.spec-52WP6SNY.js +0 -408
  588. package/dist/summaryInput-WUJNHCGH.js +0 -225
  589. package/dist/sunburst-IJ3ZG2BC.js +0 -277
  590. package/dist/survival-F2B5JKOO.js +0 -1236
  591. package/dist/survival-SQRYWGWZ.js +0 -52
  592. package/dist/survival.integration.spec-YGRZJ2OL.js +0 -967
  593. package/dist/survival.integration.spec-YGRZJ2OL.js.map +0 -7
  594. package/dist/svgraph-HVCMF6KI.js +0 -1381
  595. package/dist/svmr-PROHTMTP.js +0 -3836
  596. package/dist/table-3E64OJNV.js +0 -196
  597. package/dist/termCollection-MUH7P6B5.js +0 -32
  598. package/dist/termCollection-WKT6ESMI.js +0 -251
  599. package/dist/termCollection.unit.spec-XMOCMVER.js +0 -298
  600. package/dist/termCollectionFractionSelection-P5G6WIJJ.js +0 -41
  601. package/dist/termCollectionFractionSelection.unit.spec-MG7E3EIZ.js +0 -187
  602. package/dist/tk-HWUPUGOS.js +0 -1120
  603. package/dist/tk-SBM2GN3S.js +0 -40
  604. package/dist/tp.ui-RRB5MJRD.js +0 -1453
  605. package/dist/tvs.dt-I2ECKHQ2.js +0 -33
  606. package/dist/tvs.dtcnv.categorical-7RJPQKMX.js +0 -34
  607. package/dist/tvs.dtcnv.continuous-FW4ZXIYY.js +0 -66
  608. package/dist/tvs.dtfusion-3GDWW3ML.js +0 -34
  609. package/dist/tvs.dtitd-FER4H4UO.js +0 -34
  610. package/dist/tvs.dtsnvindel-ISEOJ5UA.js +0 -34
  611. package/dist/tvs.dtsv-JDML7EWE.js +0 -34
  612. package/dist/tvs.samplelst-MJTM6GSV.js +0 -98
  613. package/dist/tvs.termCollection-GMOXBJWF.js +0 -123
  614. package/dist/vocabulary-5EJMLXI2.js +0 -35
  615. package/dist/vocabulary-5EJMLXI2.js.map +0 -7
  616. package/dist/wsi.direct-IVPACPNT.js +0 -75
  617. /package/dist/{2dmaf-I4HBWRNQ.js.map → 2dmaf-6CEBP4SA.js.map} +0 -0
  618. /package/dist/{AIProjectAdmin-SZYSG7HR.js.map → AIProjectAdmin-2CKKFC3A.js.map} +0 -0
  619. /package/dist/{AggregateMatrix-U7HHALFR.js.map → AggregateMatrix-5TBUMFE5.js.map} +0 -0
  620. /package/dist/{AppHeader-O4RBZQZF.js.map → AppHeader-5YBPWF44.js.map} +0 -0
  621. /package/dist/{BoxPlot-NOXWAGX6.js.map → BoxPlot-UOJS5SJV.js.map} +0 -0
  622. /package/dist/{CorrelationVolcano-IJ5UT6N5.js.map → CorrelationVolcano-KX6JPZMT.js.map} +0 -0
  623. /package/dist/{Cuminc-NGUDAOAD.js.map → Cuminc-TLOOLZWR.js.map} +0 -0
  624. /package/dist/{DE-MIAHOI5J.js.map → DE-HUQLQ2Z3.js.map} +0 -0
  625. /package/dist/{DEinput-FYBSL2ER.js.map → DEinput-WWUISAF2.js.map} +0 -0
  626. /package/dist/{DifferentialAnalysis-I6S5YQXY.js.map → DifferentialAnalysis-6DTAGCEY.js.map} +0 -0
  627. /package/dist/{Disco-VLUBOZDC.js.map → Disco-P6ZLPYLF.js.map} +0 -0
  628. /package/dist/{Disco.UI-QQYWQEW7.js.map → Disco.UI-WGTMAFK2.js.map} +0 -0
  629. /package/dist/{DmrPlot-DFOBEN7A.js.map → DmrPlot-3FRU5KUK.js.map} +0 -0
  630. /package/dist/{GB-5FSXJMEZ.js.map → GB-NWOBARL3.js.map} +0 -0
  631. /package/dist/{GSEA-JISHQOVY.js.map → GSEA-DEEUAAMI.js.map} +0 -0
  632. /package/dist/{GeneExpInput-5YEX22VD.js.map → GeneExpInput-6QWGEAFV.js.map} +0 -0
  633. /package/dist/{Geomap-YVF6YBK5.js.map → Geomap-6HT2B7RH.js.map} +0 -0
  634. /package/dist/{HicApp-ZCMOOKTY.js.map → HicApp-PCNOUULF.js.map} +0 -0
  635. /package/dist/{IDCViewer-5ZNTAEUG.js.map → IDCViewer-H3QPXVM3.js.map} +0 -0
  636. /package/dist/{NumBinaryEditor-BEF5YCKI.js.map → NumBinaryEditor-IU6OLMKN.js.map} +0 -0
  637. /package/dist/{NumBinaryEditor.unit.spec-GCYZGHB2.js.map → NumBinaryEditor.unit.spec-YUPUILIV.js.map} +0 -0
  638. /package/dist/{NumContEditor-TUXPB6YJ.js.map → NumContEditor-KFDA76QN.js.map} +0 -0
  639. /package/dist/{NumContEditor.unit.spec-5CMHHWIP.js.map → NumContEditor.unit.spec-QBOT5QHU.js.map} +0 -0
  640. /package/dist/{NumCustomBinEditor-HS7RSGFV.js.map → NumCustomBinEditor-EOSTEXLB.js.map} +0 -0
  641. /package/dist/{NumCustomBinEditor.unit.spec-MM3JJXT4.js.map → NumCustomBinEditor.unit.spec-B46XWFYH.js.map} +0 -0
  642. /package/dist/{NumDiscreteEditor-ZL7PP6ZT.js.map → NumDiscreteEditor-Y4EAADXC.js.map} +0 -0
  643. /package/dist/{NumDiscreteEditor.unit.spec-OEWX2KJC.js.map → NumDiscreteEditor.unit.spec-SJGHLWSM.js.map} +0 -0
  644. /package/dist/{NumRegularBinEditor-YBXK7YV6.js.map → NumRegularBinEditor-3BNG7DIN.js.map} +0 -0
  645. /package/dist/{NumRegularBinEditor.unit.spec-FVHN4J5L.js.map → NumRegularBinEditor.unit.spec-KM45QXXG.js.map} +0 -0
  646. /package/dist/{NumSplineEditor-VN4XBTTI.js.map → NumSplineEditor-K4KPDC4S.js.map} +0 -0
  647. /package/dist/{NumSplineEditor.unit.spec-AI642DWP.js.map → NumSplineEditor.unit.spec-TKQP5XTS.js.map} +0 -0
  648. /package/dist/{NumericDensity-2KTY7DGH.js.map → NumericDensity-Z6JFVN3D.js.map} +0 -0
  649. /package/dist/{NumericDensity.unit.spec-6EA72A24.js.map → NumericDensity.unit.spec-YEYBVLEP.js.map} +0 -0
  650. /package/dist/{NumericHandler-62EN6AD3.js.map → NumericHandler-ITT6HMPN.js.map} +0 -0
  651. /package/dist/{NumericHandler.unit.spec-FXOJ2L2L.js.map → NumericHandler.unit.spec-QVONMXY4.js.map} +0 -0
  652. /package/dist/{ProteomeInput-MBBDXO2Z.js.map → ProteomeInput-PRS3DEMZ.js.map} +0 -0
  653. /package/dist/{RunChart2-RHZFHH4M.js.map → RunChart2-AMM2JFF5.js.map} +0 -0
  654. /package/dist/{SC-FAQXOHO4.js.map → SC-F7IE66VZ.js.map} +0 -0
  655. /package/dist/{Violin-2A3ICNBP.js.map → Violin-RJ6OJZ4F.js.map} +0 -0
  656. /package/dist/{Volcano-X5KGHLHZ.js.map → Volcano-BJA5HN5Y.js.map} +0 -0
  657. /package/dist/{WSIViewer-F2SD6LLP.js.map → WSIViewer-RJZGRUIR.js.map} +0 -0
  658. /package/dist/{Wsi-KAFAC3Q5.js.map → Wsi-DXP6KOQA.js.map} +0 -0
  659. /package/dist/{WsiSamplesPlot-VKPMLDZI.js.map → WsiSamplesPlot-2IAWV2B6.js.map} +0 -0
  660. /package/dist/{adSandbox-QKG5EA23.js.map → adSandbox-RGWOIV3W.js.map} +0 -0
  661. /package/dist/{animatedBubbleChart-ES62XWMN.js.map → animatedBubbleChart-J4Q2NAEW.js.map} +0 -0
  662. /package/dist/{app-2HLLOBTD.js.map → app-3QXNR4VG.js.map} +0 -0
  663. /package/dist/{app-GJL6K6V4.js.map → app-B4B7YNP3.js.map} +0 -0
  664. /package/dist/{bam-DCPAAVPX.js.map → bam-LRUMN45P.js.map} +0 -0
  665. /package/dist/{barchart-DCVGCEZO.js.map → barchart-L2G6GEHK.js.map} +0 -0
  666. /package/dist/{barchart2-5X57VSIN.js.map → barchart2-DWNVAZAJ.js.map} +0 -0
  667. /package/dist/{block-XYSUTBXJ.js.map → block-TVEVAXNP.js.map} +0 -0
  668. /package/dist/{block.init-5B27QKPU.js.map → block.init-YOHAKPRI.js.map} +0 -0
  669. /package/dist/{block.mds.expressionrank-Z7BGGPZ7.js.map → block.mds.expressionrank-PU6JH4W5.js.map} +0 -0
  670. /package/dist/{block.mds.geneboxplot-4U4UZH2J.js.map → block.mds.geneboxplot-WYYFDNE3.js.map} +0 -0
  671. /package/dist/{block.mds.junction-ZPCUEQZJ.js.map → block.mds.junction-4WCTL7Y4.js.map} +0 -0
  672. /package/dist/{block.mds.svcnv-OGGPBOL2.js.map → block.mds.svcnv-MR3VCYUW.js.map} +0 -0
  673. /package/dist/{block.svg-BWGAMNDS.js.map → block.svg-LR3Y4ZO7.js.map} +0 -0
  674. /package/dist/{block.tk.aicheck-XHHW7WST.js.map → block.tk.aicheck-A5AWKJZI.js.map} +0 -0
  675. /package/dist/{block.tk.ase-BZ2IL3CQ.js.map → block.tk.ase-AQBBAQEH.js.map} +0 -0
  676. /package/dist/{block.tk.bam-WRHOOWXN.js.map → block.tk.bam-QBTA2O3V.js.map} +0 -0
  677. /package/dist/{block.tk.bedgraphdot-B536STRA.js.map → block.tk.bedgraphdot-4ALZG2MY.js.map} +0 -0
  678. /package/dist/{block.tk.bigwig.ui-K5X3BSQC.js.map → block.tk.bigwig.ui-32W6XW37.js.map} +0 -0
  679. /package/dist/{block.tk.hicstraw-OYOKZ45W.js.map → block.tk.hicstraw-PKBHBAG2.js.map} +0 -0
  680. /package/dist/{block.tk.junction-S5JMMMR6.js.map → block.tk.junction-AO5CXUCU.js.map} +0 -0
  681. /package/dist/{block.tk.junction.textmatrixui-OLZY5BYR.js.map → block.tk.junction.textmatrixui-RORVUIPI.js.map} +0 -0
  682. /package/dist/{block.tk.ld-KINDO5UU.js.map → block.tk.ld-TNBSR4FT.js.map} +0 -0
  683. /package/dist/{block.tk.menu-3FNBVZ7J.js.map → block.tk.menu-QDJO54J5.js.map} +0 -0
  684. /package/dist/{block.tk.pgv-UHDY3T4G.js.map → block.tk.pgv-6222WWYR.js.map} +0 -0
  685. /package/dist/{brainRegions-YI7K4OVE.js.map → brainRegions-KTFH6DE2.js.map} +0 -0
  686. /package/dist/{bubbleHeatmap-EQ44CSG5.js.map → bubbleHeatmap-LNXZLFY6.js.map} +0 -0
  687. /package/dist/{cellTypeBubbleHeatmap-O3KL2YBF.js.map → cellTypeBubbleHeatmap-SRHUNX3S.js.map} +0 -0
  688. /package/dist/{chunk-7ROMS7YT.js.map → chunk-3TXVDBGN.js.map} +0 -0
  689. /package/dist/{chunk-I5KBI5PC.js.map → chunk-4HLHKBHP.js.map} +0 -0
  690. /package/dist/{chunk-4KUGV44F.js.map → chunk-5GG7Q2ZG.js.map} +0 -0
  691. /package/dist/{chunk-4GN3CSDT.js.map → chunk-5PMFCQKC.js.map} +0 -0
  692. /package/dist/{chunk-HENLCRVM.js.map → chunk-6X7PP7A4.js.map} +0 -0
  693. /package/dist/{chunk-6ZLCBVJA.js.map → chunk-A3EDLRUN.js.map} +0 -0
  694. /package/dist/{chunk-OGQMELRU.js.map → chunk-ACXFPMJP.js.map} +0 -0
  695. /package/dist/{chunk-JPQSDB2H.js.map → chunk-ASRW3UJ5.js.map} +0 -0
  696. /package/dist/{chunk-NVH5I6EP.js.map → chunk-BBILSUDX.js.map} +0 -0
  697. /package/dist/{chunk-EK7CQC3P.js.map → chunk-BOWI37X2.js.map} +0 -0
  698. /package/dist/{chunk-SACNULB3.js.map → chunk-BVA26EFK.js.map} +0 -0
  699. /package/dist/{chunk-BZ36NJHA.js.map → chunk-D5J57ENI.js.map} +0 -0
  700. /package/dist/{chunk-I56CSICA.js.map → chunk-E5BFGDLA.js.map} +0 -0
  701. /package/dist/{chunk-XXITHNR2.js.map → chunk-ECISCOPF.js.map} +0 -0
  702. /package/dist/{chunk-YCLNEB4L.js.map → chunk-ECLUUJVE.js.map} +0 -0
  703. /package/dist/{chunk-2OEMKKLP.js.map → chunk-EGDQ5I54.js.map} +0 -0
  704. /package/dist/{chunk-FCMHDCMO.js.map → chunk-ELNVTA7O.js.map} +0 -0
  705. /package/dist/{chunk-DLXMO6EK.js.map → chunk-F4PMOAQK.js.map} +0 -0
  706. /package/dist/{chunk-WVVH56ZU.js.map → chunk-FISQTHD4.js.map} +0 -0
  707. /package/dist/{chunk-GJFG2MML.js.map → chunk-HL6GJIOH.js.map} +0 -0
  708. /package/dist/{chunk-ZPFN3CYR.js.map → chunk-IGZAOCTU.js.map} +0 -0
  709. /package/dist/{chunk-IUA3PSTK.js.map → chunk-JMDJI7KM.js.map} +0 -0
  710. /package/dist/{chunk-VTYMSJGY.js.map → chunk-JQVA264Z.js.map} +0 -0
  711. /package/dist/{chunk-WEF6INPI.js.map → chunk-JRF7SRLB.js.map} +0 -0
  712. /package/dist/{chunk-25RPYQRT.js.map → chunk-KLWSW6CC.js.map} +0 -0
  713. /package/dist/{chunk-AVR4LFOO.js.map → chunk-KNNSOOTG.js.map} +0 -0
  714. /package/dist/{chunk-BY5B5BM5.js.map → chunk-KTPXQH2N.js.map} +0 -0
  715. /package/dist/{chunk-J3TIXBCS.js.map → chunk-LGKXSWY4.js.map} +0 -0
  716. /package/dist/{chunk-PBRW6QLS.js.map → chunk-LP2GIXVK.js.map} +0 -0
  717. /package/dist/{chunk-AT7HWXMW.js.map → chunk-MBHERRJR.js.map} +0 -0
  718. /package/dist/{chunk-MT5MHYL3.js.map → chunk-MLYQDJUQ.js.map} +0 -0
  719. /package/dist/{chunk-TRWFL52W.js.map → chunk-NBGDLLMX.js.map} +0 -0
  720. /package/dist/{chunk-D27C6HZW.js.map → chunk-P3JEXVBT.js.map} +0 -0
  721. /package/dist/{chunk-TMZZ4Z7L.js.map → chunk-PZPPJY4K.js.map} +0 -0
  722. /package/dist/{chunk-SEJGXC2L.js.map → chunk-Q6JF4ZLT.js.map} +0 -0
  723. /package/dist/{chunk-ALXSSRGI.js.map → chunk-QF5IH7PC.js.map} +0 -0
  724. /package/dist/{chunk-S2D6GH6D.js.map → chunk-QJ6SO7CF.js.map} +0 -0
  725. /package/dist/{chunk-WZTZJNSG.js.map → chunk-QQUOVIOM.js.map} +0 -0
  726. /package/dist/{chunk-WO4CL5JL.js.map → chunk-R3OBOAOF.js.map} +0 -0
  727. /package/dist/{chunk-VP2FPPLA.js.map → chunk-SPDNUC76.js.map} +0 -0
  728. /package/dist/{chunk-5RHE36DQ.js.map → chunk-T3663ZQL.js.map} +0 -0
  729. /package/dist/{chunk-BZKHE26Z.js.map → chunk-TSK4ZTFK.js.map} +0 -0
  730. /package/dist/{chunk-CBRZIMNF.js.map → chunk-USW6WRDZ.js.map} +0 -0
  731. /package/dist/{chunk-34AV6DED.js.map → chunk-WBMYHNKH.js.map} +0 -0
  732. /package/dist/{chunk-MEJMWIBD.js.map → chunk-X46LAU4Q.js.map} +0 -0
  733. /package/dist/{chunk-254KEDDH.js.map → chunk-XE6E526E.js.map} +0 -0
  734. /package/dist/{chunk-55PGOBTR.js.map → chunk-XWCWBHLB.js.map} +0 -0
  735. /package/dist/{chunk-6456HESK.js.map → chunk-YCECQV3T.js.map} +0 -0
  736. /package/dist/{chunk-MECQLU4J.js.map → chunk-Z4NADGZX.js.map} +0 -0
  737. /package/dist/{chunk-6THPWBBU.js.map → chunk-Z53KOPRJ.js.map} +0 -0
  738. /package/dist/{cohort-JCMVMOBQ.js.map → cohort-U7M6Q2UX.js.map} +0 -0
  739. /package/dist/{condition-SHRWEMG7.js.map → condition-EGAV2PMJ.js.map} +0 -0
  740. /package/dist/{controls-EKIHLQS6.js.map → controls-PTMYWUZV.js.map} +0 -0
  741. /package/dist/{controls.config-WSVX6UC6.js.map → controls.config-DOA6PTP2.js.map} +0 -0
  742. /package/dist/{correlation-ALFFZLKD.js.map → correlation-Y3EL6GB7.js.map} +0 -0
  743. /package/dist/{customdata.inputui-L2UAIU6I.js.map → customdata.inputui-4NDDG6FL.js.map} +0 -0
  744. /package/dist/{dataDownload-73N5364T.js.map → dataDownload-EQGUAOK2.js.map} +0 -0
  745. /package/dist/{databrowser.ui-NTOGXDYE.js.map → databrowser.ui-ABGOJUWQ.js.map} +0 -0
  746. /package/dist/{dictionary-CUAU2X6Q.js.map → dictionary-YOLLEDE5.js.map} +0 -0
  747. /package/dist/{dnaMethylation-AGWAGXVD.js.map → dnaMethylation-JZT63UHO.js.map} +0 -0
  748. /package/dist/{dnaMethylation.integration.spec-K22XXOU4.js.map → dnaMethylation.integration.spec-EATCABJW.js.map} +0 -0
  749. /package/dist/{dofetch-BVJ77SP7.js.map → dofetch-YNBIUFV5.js.map} +0 -0
  750. /package/dist/{e2pca-4HIJWLSC.js.map → e2pca-RD6COCRL.js.map} +0 -0
  751. /package/dist/{ep-U4RGH62P.js.map → ep-BAI7WUET.js.map} +0 -0
  752. /package/dist/{expclust.gdc.spec-JJGGQDQK.js.map → expclust.gdc.spec-LKV2CQA5.js.map} +0 -0
  753. /package/dist/{facet-NNUPVXCG.js.map → facet-X3SXQIAC.js.map} +0 -0
  754. /package/dist/{gb-2MYXJEMY.js.map → gb-K324K7XB.js.map} +0 -0
  755. /package/dist/{geneExpClustering-6ORRRH43.js.map → geneExpClustering-BJD5U3KG.js.map} +0 -0
  756. /package/dist/{geneExpression-4JVWKJWP.js.map → geneExpression-2TK3XLZ5.js.map} +0 -0
  757. /package/dist/{geneExpression-MARWAIHW.js.map → geneExpression-F6NRTHZ4.js.map} +0 -0
  758. /package/dist/{geneExpression.unit.spec-3CQTUSDK.js.map → geneExpression.unit.spec-IFZN3J6A.js.map} +0 -0
  759. /package/dist/{geneORA-M2L2YEX3.js.map → geneORA-DUEP735U.js.map} +0 -0
  760. /package/dist/{geneRanking-S2B3LSTU.js.map → geneRanking-LURDNT7L.js.map} +0 -0
  761. /package/dist/{geneVariant-D2ANGINP.js.map → geneVariant-EAVCWQAZ.js.map} +0 -0
  762. /package/dist/{geneVariant.integration.spec-62NJS7GD.js.map → geneVariant.integration.spec-LHL4ERFO.js.map} +0 -0
  763. /package/dist/{genefusion.ui-4ZZNKANU.js.map → genefusion.ui-4T5R7DT7.js.map} +0 -0
  764. /package/dist/{geneset-QCLFANPD.js.map → geneset-3PWXPBG2.js.map} +0 -0
  765. /package/dist/{genomeBrowser.spec-BV5M6JFN.js.map → genomeBrowser.spec-5SEN7R2P.js.map} +0 -0
  766. /package/dist/{grin2-J4VDS2JT.js.map → grin2-EXBG7TMS.js.map} +0 -0
  767. /package/dist/{grin2-K5G3N5XP.js.map → grin2-XIXVFVWO.js.map} +0 -0
  768. /package/dist/{geneVariant-T4NG72OL.js.map → hierCluster-5XQIWXAY.js.map} +0 -0
  769. /package/dist/{hierCluster-FMK524WF.js.map → hierCluster-I4TAQWPF.js.map} +0 -0
  770. /package/dist/{hierCluster-XF7ZWVKD.js.map → hierCluster.config-T7HVAWES.js.map} +0 -0
  771. /package/dist/{hierCluster.integration.spec-NSLTJBL4.js.map → hierCluster.integration.spec-XWX43K4D.js.map} +0 -0
  772. /package/dist/{hierCluster.config-LYAQCO3L.js.map → hierCluster.interactivity-MYIDHFSL.js.map} +0 -0
  773. /package/dist/{hierCluster.interactivity-VKAOR2DR.js.map → hierCluster.renderers-YRXA5ZUK.js.map} +0 -0
  774. /package/dist/{imagePlot-IPTIFVLT.js.map → imagePlot-4JQB6JUG.js.map} +0 -0
  775. /package/dist/{hierCluster.renderers-6C5F7LRL.js.map → importPlot-D3MXCCLN.js.map} +0 -0
  776. /package/dist/{importPlot-V3P6DCUR.js.map → isoformExpression-WNGGUVIZ.js.map} +0 -0
  777. /package/dist/{isoformExpression.unit.spec-IYZWSLO5.js.map → isoformExpression.unit.spec-NVJ5TIKM.js.map} +0 -0
  778. /package/dist/{isoformExpression-6IIPJI4M.js.map → junction-O7N57JE3.js.map} +0 -0
  779. /package/dist/{junction.unit.spec-M4EN7KPG.js.map → junction.unit.spec-Z63DRTRR.js.map} +0 -0
  780. /package/dist/{junction-E6FB2OP4.js.map → launch.adhoc-MBDRXD3B.js.map} +0 -0
  781. /package/dist/{leftlabel.sample-5WTK5NBD.js.map → leftlabel.sample-IG6FOQ26.js.map} +0 -0
  782. /package/dist/{lollipop-L64ZTEEX.js.map → lollipop-ZUYBLPGN.js.map} +0 -0
  783. /package/dist/{maf-QLNFANWO.js.map → maf-QOS5LURG.js.map} +0 -0
  784. /package/dist/{maftimeline-U7FMTMTV.js.map → maftimeline-FEHP2J55.js.map} +0 -0
  785. /package/dist/{launch.adhoc-SU5L2YXN.js.map → matrix-BG4J4RXA.js.map} +0 -0
  786. /package/dist/{matrix-GFVK3PEB.js.map → matrix-PX4LWTGN.js.map} +0 -0
  787. /package/dist/{matrix-HFJQGPJJ.js.map → matrix.cells-PTIDQVCI.js.map} +0 -0
  788. /package/dist/{matrix.cells-5JKTBI3X.js.map → matrix.config-NHW7BLIE.js.map} +0 -0
  789. /package/dist/{matrix.config-QPTQ22RR.js.map → matrix.data-FMIQRXOA.js.map} +0 -0
  790. /package/dist/{matrix.data-MXIUMSRR.js.map → matrix.dom-4S2UYJOU.js.map} +0 -0
  791. /package/dist/{matrix.dom-ENBFB4CW.js.map → matrix.groups-QMID5XAO.js.map} +0 -0
  792. /package/dist/{matrix.integration.spec-X4HM67TN.js.map → matrix.integration.spec-H6T7KP5R.js.map} +0 -0
  793. /package/dist/{matrix.groups-6DYTBVGR.js.map → matrix.interactivity-WQUO25HB.js.map} +0 -0
  794. /package/dist/{matrix.interactivity-QTB56LXE.js.map → matrix.layout-CTPVZZ34.js.map} +0 -0
  795. /package/dist/{matrix.layout-VQAORIIH.js.map → matrix.legend-K6EYUN6L.js.map} +0 -0
  796. /package/dist/{matrix.legend-SDJXYNHE.js.map → matrix.renderers-5DIAUY6R.js.map} +0 -0
  797. /package/dist/{matrix.renderers-6PMYIP2S.js.map → matrix.serieses-LRMN2J52.js.map} +0 -0
  798. /package/dist/{matrix.serieses-WWY7474U.js.map → matrix.sort-RGAGEA6Z.js.map} +0 -0
  799. /package/dist/{matrix.sort.unit.spec-3RM7V6CS.js.map → matrix.sort.unit.spec-RGICZZJL.js.map} +0 -0
  800. /package/dist/{matrix.sorterUi.unit.spec-YOV6FBRT.js.map → matrix.sorterUi.unit.spec-45QPEGWE.js.map} +0 -0
  801. /package/dist/{mavb-PJA76T7F.js.map → mavb-VEIVB62L.js.map} +0 -0
  802. /package/dist/{mds.fimo-GW7XPJGQ.js.map → mds.fimo-BG4LTWFB.js.map} +0 -0
  803. /package/dist/{mds.samplescatterplot-ZAIEWPO4.js.map → mds.samplescatterplot-PWADJZ2J.js.map} +0 -0
  804. /package/dist/{mds.survivalplot-ETLLFDWR.js.map → mds.survivalplot-BX4HZ23K.js.map} +0 -0
  805. /package/dist/{multivalue-AZPAQJQD.js.map → multivalue-OZALSBFW.js.map} +0 -0
  806. /package/dist/{numericDictTermCluster-KOJODGZT.js.map → numericDictTermCluster-7PGJ7KV4.js.map} +0 -0
  807. /package/dist/{oncomatrix-2TRXETOJ.js.map → oncomatrix-Q2EQZPLS.js.map} +0 -0
  808. /package/dist/{oncomatrix.spec-DOVKLS24.js.map → oncomatrix.spec-YEQOQRPW.js.map} +0 -0
  809. /package/dist/{plot.2dvaf-RQN6QADW.js.map → plot.2dvaf-NJSB3HNH.js.map} +0 -0
  810. /package/dist/{matrix.sort-V46C2MAZ.js.map → plot.app-AEUR6XGI.js.map} +0 -0
  811. /package/dist/{plot.barplot-46QRWJOX.js.map → plot.barplot-OXN2P5KL.js.map} +0 -0
  812. /package/dist/{plot.boxplot-54J4UWQX.js.map → plot.boxplot-2KHEVVFE.js.map} +0 -0
  813. /package/dist/{plot.brainImaging-Y32KQFLS.js.map → plot.brainImaging-JWDX4BZG.js.map} +0 -0
  814. /package/dist/{plot.disco-4R5J7Z5S.js.map → plot.disco-LUFC5GGC.js.map} +0 -0
  815. /package/dist/{plot.ssgq-6LCKYRYD.js.map → plot.ssgq-FMM3IRNA.js.map} +0 -0
  816. /package/dist/{plot.vaf2cov-UCBH4NSC.js.map → plot.vaf2cov-K5TAQUC5.js.map} +0 -0
  817. /package/dist/{plot.wsi-DAC7NUQE.js.map → plot.wsi-CNQCNZ4Z.js.map} +0 -0
  818. /package/dist/{polar2-JKV74QV5.js.map → polar2-AB6SVYRS.js.map} +0 -0
  819. /package/dist/{profileForms-VDYCFH4M.js.map → profileForms-AIEHZ4GC.js.map} +0 -0
  820. /package/dist/{plot.app-MOIVGIS6.js.map → profilePlot-PZDFGXKZ.js.map} +0 -0
  821. /package/dist/{proteinView-A3EM6OR5.js.map → proteinView-7GWHQYXC.js.map} +0 -0
  822. /package/dist/{pseudbulk.unit.spec-CUMTLAH7.js.map → pseudbulk.unit.spec-NFT4VNTI.js.map} +0 -0
  823. /package/dist/{profilePlot-PR3LVRYU.js.map → pseudobulk-WDGWTXW4.js.map} +0 -0
  824. /package/dist/{pseudobulk-5E5MSMU3.js.map → qualitative-PZYJENE7.js.map} +0 -0
  825. /package/dist/{radar2-A5OYMORS.js.map → radar2-QHRGH3YS.js.map} +0 -0
  826. /package/dist/{radarFacility2-4TPJB6M4.js.map → radarFacility2-2JD26FL6.js.map} +0 -0
  827. /package/dist/{qualitative-WPXUBISK.js.map → render-YA4Z56LT.js.map} +0 -0
  828. /package/dist/{report-NCJOTYIC.js.map → report-2NUKFJTF.js.map} +0 -0
  829. /package/dist/{render-XQBWWS33.js.map → sampleView-2XVPJTVR.js.map} +0 -0
  830. /package/dist/{samplelst-FV7BAUN5.js.map → samplelst-DMILFDT5.js.map} +0 -0
  831. /package/dist/{samplematrix-DFD3PNI4.js.map → samplematrix-LYA5XTUM.js.map} +0 -0
  832. /package/dist/{sc-GIMTDVLG.js.map → sc-CM2C34MN.js.map} +0 -0
  833. /package/dist/{scatter-4GJ5HKUY.js.map → scatter-C3CH3HTF.js.map} +0 -0
  834. /package/dist/{scatter-P3ISZB3R.js.map → scatter-GO6LV6NY.js.map} +0 -0
  835. /package/dist/{selectGenomeWithTklst-ZZ4CEHDU.js.map → selectGenomeWithTklst-5C7UBTGZ.js.map} +0 -0
  836. /package/dist/{sampleView-2PUSMG4W.js.map → singleCellCellType-EZYESBVZ.js.map} +0 -0
  837. /package/dist/{singleCellCellType.unit.spec-JNEIICK5.js.map → singleCellCellType.unit.spec-DB6FM4XR.js.map} +0 -0
  838. /package/dist/{singleCellCellType-CEERCVTR.js.map → singleCellGeneExpression-DZLEFPW4.js.map} +0 -0
  839. /package/dist/{singleCellGeneExpression.unit.spec-CGRZGY66.js.map → singleCellGeneExpression.unit.spec-ZTBK3V43.js.map} +0 -0
  840. /package/dist/{singleCellGeneExpression-G5B7DDES.js.map → singleCellPlot-VF4TZ4FT.js.map} +0 -0
  841. /package/dist/{singlecell-IPTSIKNA.js.map → singlecell-2MHROPBN.js.map} +0 -0
  842. /package/dist/{singlecell-VB4KLPJF.js.map → singlecell-GPAFNOUZ.js.map} +0 -0
  843. /package/dist/{singleCellPlot-US5KTHS4.js.map → snp-K4EAEVW4.js.map} +0 -0
  844. /package/dist/{snp.unit.spec-Q537NGVG.js.map → snp.unit.spec-BUVQLVOY.js.map} +0 -0
  845. /package/dist/{snplocus-BV6WJTVP.js.map → snplocus-GEVISN6Z.js.map} +0 -0
  846. /package/dist/{spliceevent.a53ss.diagram-3BUQVK4Q.js.map → spliceevent.a53ss.diagram-5UPWNAZF.js.map} +0 -0
  847. /package/dist/{spliceevent.exonskip.diagram-CQZ2DFQ5.js.map → spliceevent.exonskip.diagram-7TKAQURC.js.map} +0 -0
  848. /package/dist/{spliceevent.noeventdiagram-QAEPR6LD.js.map → spliceevent.noeventdiagram-CDXZLR3Z.js.map} +0 -0
  849. /package/dist/{snp-6V2SCCRN.js.map → ssGSEA-NMCJUQXT.js.map} +0 -0
  850. /package/dist/{ssGSEA.unit.spec-A337IMC7.js.map → ssGSEA.unit.spec-3FQALTPQ.js.map} +0 -0
  851. /package/dist/{stattable-J4ZQKJFM.js.map → stattable-2RXQPWKK.js.map} +0 -0
  852. /package/dist/{summarizeCnvGeneexp-76UJXLA4.js.map → summarizeCnvGeneexp-4BQS5AFM.js.map} +0 -0
  853. /package/dist/{summarizeGeneexpSurvival-ZUEHXA2R.js.map → summarizeGeneexpSurvival-HTBZQFB5.js.map} +0 -0
  854. /package/dist/{summarizeMutationCnv-EBCBVMG6.js.map → summarizeMutationCnv-XUWZGPCM.js.map} +0 -0
  855. /package/dist/{ssGSEA-XNI5S7AC.js.map → summarizeMutationDiagnosis-QUJX42TO.js.map} +0 -0
  856. /package/dist/{summarizeMutationSurvival-QRFMJLLO.js.map → summarizeMutationSurvival-3R47TTR6.js.map} +0 -0
  857. /package/dist/{summarizeMutationDiagnosis-VLFI2ZIZ.js.map → summary-6UUB63QR.js.map} +0 -0
  858. /package/dist/{summary.integration.spec-52WP6SNY.js.map → summary.integration.spec-JJDE6SRV.js.map} +0 -0
  859. /package/dist/{summaryInput-WUJNHCGH.js.map → summaryInput-JG4AW6FW.js.map} +0 -0
  860. /package/dist/{sunburst-IJ3ZG2BC.js.map → sunburst-YKB42RZX.js.map} +0 -0
  861. /package/dist/{survival-SQRYWGWZ.js.map → survival-3IFFTDQA.js.map} +0 -0
  862. /package/dist/{survival-F2B5JKOO.js.map → survival-HOFNJENX.js.map} +0 -0
  863. /package/dist/{svgraph-HVCMF6KI.js.map → svgraph-WFEY4ZIZ.js.map} +0 -0
  864. /package/dist/{svmr-PROHTMTP.js.map → svmr-44EIX7YD.js.map} +0 -0
  865. /package/dist/{table-3E64OJNV.js.map → table-6MKVJUNC.js.map} +0 -0
  866. /package/dist/{termCollection-WKT6ESMI.js.map → termCollection-6JBVQL6Y.js.map} +0 -0
  867. /package/dist/{summary-U3YKEMZC.js.map → termCollection-TTELZVC5.js.map} +0 -0
  868. /package/dist/{termCollection.unit.spec-XMOCMVER.js.map → termCollection.unit.spec-6Z7X646L.js.map} +0 -0
  869. /package/dist/{termCollection-MUH7P6B5.js.map → termCollectionFractionSelection-5DVIJBM5.js.map} +0 -0
  870. /package/dist/{termCollectionFractionSelection.unit.spec-MG7E3EIZ.js.map → termCollectionFractionSelection.unit.spec-3HIM5BIF.js.map} +0 -0
  871. /package/dist/{termCollectionFractionSelection-P5G6WIJJ.js.map → tk-HSYWJCGQ.js.map} +0 -0
  872. /package/dist/{tk-HWUPUGOS.js.map → tk-PNOVG2XS.js.map} +0 -0
  873. /package/dist/{tp.ui-RRB5MJRD.js.map → tp.ui-COBBSUPB.js.map} +0 -0
  874. /package/dist/{tk-SBM2GN3S.js.map → tvs.dt-35AKURFI.js.map} +0 -0
  875. /package/dist/{tvs.dtcnv.categorical-7RJPQKMX.js.map → tvs.dtcnv.categorical-3EHXYROL.js.map} +0 -0
  876. /package/dist/{tvs.dtcnv.continuous-FW4ZXIYY.js.map → tvs.dtcnv.continuous-AXQ2GU6S.js.map} +0 -0
  877. /package/dist/{tvs.dtfusion-3GDWW3ML.js.map → tvs.dtfusion-PLJIMPNX.js.map} +0 -0
  878. /package/dist/{tvs.dtitd-FER4H4UO.js.map → tvs.dtitd-JS6RFBV5.js.map} +0 -0
  879. /package/dist/{tvs.dtsnvindel-ISEOJ5UA.js.map → tvs.dtsnvindel-MDEM5MPT.js.map} +0 -0
  880. /package/dist/{tvs.dtsv-JDML7EWE.js.map → tvs.dtsv-OU756YLO.js.map} +0 -0
  881. /package/dist/{tvs.samplelst-MJTM6GSV.js.map → tvs.samplelst-5NDICES4.js.map} +0 -0
  882. /package/dist/{tvs.termCollection-GMOXBJWF.js.map → tvs.termCollection-5URPDPH6.js.map} +0 -0
  883. /package/dist/{tvs.dt-I2ECKHQ2.js.map → vocabulary-CHCVMPK5.js.map} +0 -0
  884. /package/dist/{wsi.direct-IVPACPNT.js.map → wsi.direct-JSKV4H4X.js.map} +0 -0
@@ -1,1565 +0,0 @@
1
- import {
2
- BufferGeometry,
3
- Color,
4
- EventDispatcher,
5
- FileLoader,
6
- Float32BufferAttribute,
7
- Int32BufferAttribute,
8
- LinearSRGBColorSpace,
9
- Loader,
10
- MOUSE,
11
- MathUtils,
12
- NoToneMapping,
13
- PerspectiveCamera,
14
- Points,
15
- PointsMaterial,
16
- Quaternion,
17
- Scene,
18
- Vector2,
19
- Vector3,
20
- WebGLRenderer
21
- } from "./chunk-72PLI3GC.js";
22
- import {
23
- legend_newrow
24
- } from "./chunk-IUA3PSTK.js";
25
- import {
26
- schemeCategory20
27
- } from "./chunk-V2OJLJSK.js";
28
- import {
29
- findgenemodel_bysymbol,
30
- gene_searchbox
31
- } from "./chunk-4GN3CSDT.js";
32
- import "./chunk-J3TIXBCS.js";
33
- import {
34
- appear2 as appear,
35
- disappear2 as disappear,
36
- font,
37
- newpane,
38
- sayerror
39
- } from "./chunk-GQQ4R6BI.js";
40
- import "./chunk-HJ6L54YS.js";
41
- import "./chunk-XFAL46LZ.js";
42
- import "./chunk-7AYGTMED.js";
43
- import {
44
- Menu
45
- } from "./chunk-ELJX3QIQ.js";
46
- import "./chunk-7BLXK3GI.js";
47
- import "./chunk-VSSZJHOR.js";
48
- import "./chunk-5RUVBYLK.js";
49
- import {
50
- dofetch,
51
- dofetch2
52
- } from "./chunk-HENLCRVM.js";
53
- import "./chunk-4WF3XDQP.js";
54
- import "./chunk-7UFK4GVI.js";
55
- import "./chunk-4QBRVM4V.js";
56
- import "./chunk-H6INPPUC.js";
57
- import "./chunk-PF4DSFDR.js";
58
- import "./chunk-IMYSFDE5.js";
59
- import "./chunk-W5J3LTYS.js";
60
- import {
61
- area_default,
62
- axisBottom,
63
- axisLeft,
64
- axisTop,
65
- line_default,
66
- monotoneX,
67
- plasma
68
- } from "./chunk-4ZL6IBXM.js";
69
- import {
70
- band,
71
- linear,
72
- ordinal,
73
- sequential
74
- } from "./chunk-OZVWP4ZR.js";
75
- import "./chunk-FXQXCOII.js";
76
- import "./chunk-TLT4YIG3.js";
77
- import "./chunk-5R63Q5KH.js";
78
- import {
79
- pointer_default
80
- } from "./chunk-I6Y4O3RR.js";
81
- import "./chunk-Q5RDQNIT.js";
82
- import "./chunk-DQC5FFGV.js";
83
- import "./chunk-HFNDKYVF.js";
84
-
85
- // ../node_modules/three/examples/jsm/loaders/PCDLoader.js
86
- var PCDLoader = class extends Loader {
87
- constructor(manager) {
88
- super(manager);
89
- this.littleEndian = true;
90
- }
91
- load(url, onLoad, onProgress, onError) {
92
- const scope = this;
93
- const loader = new FileLoader(scope.manager);
94
- loader.setPath(scope.path);
95
- loader.setResponseType("arraybuffer");
96
- loader.setRequestHeader(scope.requestHeader);
97
- loader.setWithCredentials(scope.withCredentials);
98
- loader.load(url, function(data) {
99
- try {
100
- onLoad(scope.parse(data));
101
- } catch (e) {
102
- if (onError) {
103
- onError(e);
104
- } else {
105
- console.error(e);
106
- }
107
- scope.manager.itemError(url);
108
- }
109
- }, onProgress, onError);
110
- }
111
- parse(data) {
112
- function decompressLZF(inData, outLength) {
113
- const inLength = inData.length;
114
- const outData = new Uint8Array(outLength);
115
- let inPtr = 0;
116
- let outPtr = 0;
117
- let ctrl;
118
- let len;
119
- let ref;
120
- do {
121
- ctrl = inData[inPtr++];
122
- if (ctrl < 1 << 5) {
123
- ctrl++;
124
- if (outPtr + ctrl > outLength) throw new Error("Output buffer is not large enough");
125
- if (inPtr + ctrl > inLength) throw new Error("Invalid compressed data");
126
- do {
127
- outData[outPtr++] = inData[inPtr++];
128
- } while (--ctrl);
129
- } else {
130
- len = ctrl >> 5;
131
- ref = outPtr - ((ctrl & 31) << 8) - 1;
132
- if (inPtr >= inLength) throw new Error("Invalid compressed data");
133
- if (len === 7) {
134
- len += inData[inPtr++];
135
- if (inPtr >= inLength) throw new Error("Invalid compressed data");
136
- }
137
- ref -= inData[inPtr++];
138
- if (outPtr + len + 2 > outLength) throw new Error("Output buffer is not large enough");
139
- if (ref < 0) throw new Error("Invalid compressed data");
140
- if (ref >= outPtr) throw new Error("Invalid compressed data");
141
- do {
142
- outData[outPtr++] = outData[ref++];
143
- } while (--len + 2);
144
- }
145
- } while (inPtr < inLength);
146
- return outData;
147
- }
148
- function parseHeader(data2) {
149
- const PCDheader2 = {};
150
- const result1 = data2.search(/[\r\n]DATA\s(\S*)\s/i);
151
- const result2 = /[\r\n]DATA\s(\S*)\s/i.exec(data2.slice(result1 - 1));
152
- PCDheader2.data = result2[1];
153
- PCDheader2.headerLen = result2[0].length + result1;
154
- PCDheader2.str = data2.slice(0, PCDheader2.headerLen);
155
- PCDheader2.str = PCDheader2.str.replace(/#.*/gi, "");
156
- PCDheader2.version = /VERSION (.*)/i.exec(PCDheader2.str);
157
- PCDheader2.fields = /FIELDS (.*)/i.exec(PCDheader2.str);
158
- PCDheader2.size = /SIZE (.*)/i.exec(PCDheader2.str);
159
- PCDheader2.type = /TYPE (.*)/i.exec(PCDheader2.str);
160
- PCDheader2.count = /COUNT (.*)/i.exec(PCDheader2.str);
161
- PCDheader2.width = /WIDTH (.*)/i.exec(PCDheader2.str);
162
- PCDheader2.height = /HEIGHT (.*)/i.exec(PCDheader2.str);
163
- PCDheader2.viewpoint = /VIEWPOINT (.*)/i.exec(PCDheader2.str);
164
- PCDheader2.points = /POINTS (.*)/i.exec(PCDheader2.str);
165
- if (PCDheader2.version !== null)
166
- PCDheader2.version = parseFloat(PCDheader2.version[1]);
167
- PCDheader2.fields = PCDheader2.fields !== null ? PCDheader2.fields[1].split(" ") : [];
168
- if (PCDheader2.type !== null)
169
- PCDheader2.type = PCDheader2.type[1].split(" ");
170
- if (PCDheader2.width !== null)
171
- PCDheader2.width = parseInt(PCDheader2.width[1]);
172
- if (PCDheader2.height !== null)
173
- PCDheader2.height = parseInt(PCDheader2.height[1]);
174
- if (PCDheader2.viewpoint !== null)
175
- PCDheader2.viewpoint = PCDheader2.viewpoint[1];
176
- if (PCDheader2.points !== null)
177
- PCDheader2.points = parseInt(PCDheader2.points[1], 10);
178
- if (PCDheader2.points === null)
179
- PCDheader2.points = PCDheader2.width * PCDheader2.height;
180
- if (PCDheader2.size !== null) {
181
- PCDheader2.size = PCDheader2.size[1].split(" ").map(function(x) {
182
- return parseInt(x, 10);
183
- });
184
- }
185
- if (PCDheader2.count !== null) {
186
- PCDheader2.count = PCDheader2.count[1].split(" ").map(function(x) {
187
- return parseInt(x, 10);
188
- });
189
- } else {
190
- PCDheader2.count = [];
191
- for (let i = 0, l = PCDheader2.fields.length; i < l; i++) {
192
- PCDheader2.count.push(1);
193
- }
194
- }
195
- PCDheader2.offset = {};
196
- let sizeSum = 0;
197
- for (let i = 0, l = PCDheader2.fields.length; i < l; i++) {
198
- if (PCDheader2.data === "ascii") {
199
- PCDheader2.offset[PCDheader2.fields[i]] = i;
200
- } else {
201
- PCDheader2.offset[PCDheader2.fields[i]] = sizeSum;
202
- sizeSum += PCDheader2.size[i] * PCDheader2.count[i];
203
- }
204
- }
205
- PCDheader2.rowSize = sizeSum;
206
- return PCDheader2;
207
- }
208
- const textData = new TextDecoder().decode(data);
209
- const PCDheader = parseHeader(textData);
210
- const position = [];
211
- const normal = [];
212
- const color = [];
213
- const intensity = [];
214
- const label = [];
215
- if (PCDheader.data === "ascii") {
216
- const offset = PCDheader.offset;
217
- const pcdData = textData.slice(PCDheader.headerLen);
218
- const lines = pcdData.split("\n");
219
- for (let i = 0, l = lines.length; i < l; i++) {
220
- if (lines[i] === "") continue;
221
- const line = lines[i].split(" ");
222
- if (offset.x !== void 0) {
223
- position.push(parseFloat(line[offset.x]));
224
- position.push(parseFloat(line[offset.y]));
225
- position.push(parseFloat(line[offset.z]));
226
- }
227
- if (offset.rgb !== void 0) {
228
- const rgb_field_index = PCDheader.fields.findIndex((field) => field === "rgb");
229
- const rgb_type = PCDheader.type[rgb_field_index];
230
- const float = parseFloat(line[offset.rgb]);
231
- let rgb = float;
232
- if (rgb_type === "F") {
233
- const farr = new Float32Array(1);
234
- farr[0] = float;
235
- rgb = new Int32Array(farr.buffer)[0];
236
- }
237
- const r = rgb >> 16 & 255;
238
- const g = rgb >> 8 & 255;
239
- const b = rgb >> 0 & 255;
240
- color.push(r / 255, g / 255, b / 255);
241
- }
242
- if (offset.normal_x !== void 0) {
243
- normal.push(parseFloat(line[offset.normal_x]));
244
- normal.push(parseFloat(line[offset.normal_y]));
245
- normal.push(parseFloat(line[offset.normal_z]));
246
- }
247
- if (offset.intensity !== void 0) {
248
- intensity.push(parseFloat(line[offset.intensity]));
249
- }
250
- if (offset.label !== void 0) {
251
- label.push(parseInt(line[offset.label]));
252
- }
253
- }
254
- }
255
- if (PCDheader.data === "binary_compressed") {
256
- const sizes = new Uint32Array(data.slice(PCDheader.headerLen, PCDheader.headerLen + 8));
257
- const compressedSize = sizes[0];
258
- const decompressedSize = sizes[1];
259
- const decompressed = decompressLZF(new Uint8Array(data, PCDheader.headerLen + 8, compressedSize), decompressedSize);
260
- const dataview = new DataView(decompressed.buffer);
261
- const offset = PCDheader.offset;
262
- for (let i = 0; i < PCDheader.points; i++) {
263
- if (offset.x !== void 0) {
264
- const xIndex = PCDheader.fields.indexOf("x");
265
- const yIndex = PCDheader.fields.indexOf("y");
266
- const zIndex = PCDheader.fields.indexOf("z");
267
- position.push(dataview.getFloat32(PCDheader.points * offset.x + PCDheader.size[xIndex] * i, this.littleEndian));
268
- position.push(dataview.getFloat32(PCDheader.points * offset.y + PCDheader.size[yIndex] * i, this.littleEndian));
269
- position.push(dataview.getFloat32(PCDheader.points * offset.z + PCDheader.size[zIndex] * i, this.littleEndian));
270
- }
271
- if (offset.rgb !== void 0) {
272
- const rgbIndex = PCDheader.fields.indexOf("rgb");
273
- color.push(dataview.getUint8(PCDheader.points * offset.rgb + PCDheader.size[rgbIndex] * i + 2) / 255);
274
- color.push(dataview.getUint8(PCDheader.points * offset.rgb + PCDheader.size[rgbIndex] * i + 1) / 255);
275
- color.push(dataview.getUint8(PCDheader.points * offset.rgb + PCDheader.size[rgbIndex] * i + 0) / 255);
276
- }
277
- if (offset.normal_x !== void 0) {
278
- const xIndex = PCDheader.fields.indexOf("normal_x");
279
- const yIndex = PCDheader.fields.indexOf("normal_y");
280
- const zIndex = PCDheader.fields.indexOf("normal_z");
281
- normal.push(dataview.getFloat32(PCDheader.points * offset.normal_x + PCDheader.size[xIndex] * i, this.littleEndian));
282
- normal.push(dataview.getFloat32(PCDheader.points * offset.normal_y + PCDheader.size[yIndex] * i, this.littleEndian));
283
- normal.push(dataview.getFloat32(PCDheader.points * offset.normal_z + PCDheader.size[zIndex] * i, this.littleEndian));
284
- }
285
- if (offset.intensity !== void 0) {
286
- const intensityIndex = PCDheader.fields.indexOf("intensity");
287
- intensity.push(dataview.getFloat32(PCDheader.points * offset.intensity + PCDheader.size[intensityIndex] * i, this.littleEndian));
288
- }
289
- if (offset.label !== void 0) {
290
- const labelIndex = PCDheader.fields.indexOf("label");
291
- label.push(dataview.getInt32(PCDheader.points * offset.label + PCDheader.size[labelIndex] * i, this.littleEndian));
292
- }
293
- }
294
- }
295
- if (PCDheader.data === "binary") {
296
- const dataview = new DataView(data, PCDheader.headerLen);
297
- const offset = PCDheader.offset;
298
- for (let i = 0, row = 0; i < PCDheader.points; i++, row += PCDheader.rowSize) {
299
- if (offset.x !== void 0) {
300
- position.push(dataview.getFloat32(row + offset.x, this.littleEndian));
301
- position.push(dataview.getFloat32(row + offset.y, this.littleEndian));
302
- position.push(dataview.getFloat32(row + offset.z, this.littleEndian));
303
- }
304
- if (offset.rgb !== void 0) {
305
- color.push(dataview.getUint8(row + offset.rgb + 2) / 255);
306
- color.push(dataview.getUint8(row + offset.rgb + 1) / 255);
307
- color.push(dataview.getUint8(row + offset.rgb + 0) / 255);
308
- }
309
- if (offset.normal_x !== void 0) {
310
- normal.push(dataview.getFloat32(row + offset.normal_x, this.littleEndian));
311
- normal.push(dataview.getFloat32(row + offset.normal_y, this.littleEndian));
312
- normal.push(dataview.getFloat32(row + offset.normal_z, this.littleEndian));
313
- }
314
- if (offset.intensity !== void 0) {
315
- intensity.push(dataview.getFloat32(row + offset.intensity, this.littleEndian));
316
- }
317
- if (offset.label !== void 0) {
318
- label.push(dataview.getInt32(row + offset.label, this.littleEndian));
319
- }
320
- }
321
- }
322
- const geometry = new BufferGeometry();
323
- if (position.length > 0) geometry.setAttribute("position", new Float32BufferAttribute(position, 3));
324
- if (normal.length > 0) geometry.setAttribute("normal", new Float32BufferAttribute(normal, 3));
325
- if (color.length > 0) geometry.setAttribute("color", new Float32BufferAttribute(color, 3));
326
- if (intensity.length > 0) geometry.setAttribute("intensity", new Float32BufferAttribute(intensity, 1));
327
- if (label.length > 0) geometry.setAttribute("label", new Int32BufferAttribute(label, 1));
328
- geometry.computeBoundingSphere();
329
- const material = new PointsMaterial({ size: 5e-3 });
330
- if (color.length > 0) {
331
- material.vertexColors = true;
332
- }
333
- return new Points(geometry, material);
334
- }
335
- };
336
-
337
- // ../public/static/js/WebGL.js
338
- function isWebGLAvailable() {
339
- try {
340
- var canvas = document.createElement("canvas");
341
- return !!(window.WebGLRenderingContext && (canvas.getContext("webgl") || canvas.getContext("experimental-webgl")));
342
- } catch (e) {
343
- return false;
344
- }
345
- }
346
- function getWebGLErrorMessage() {
347
- return this.getErrorMessage(1);
348
- }
349
-
350
- // ../node_modules/three/examples/jsm/controls/TrackballControls.js
351
- var _changeEvent = { type: "change" };
352
- var _startEvent = { type: "start" };
353
- var _endEvent = { type: "end" };
354
- var TrackballControls = class extends EventDispatcher {
355
- constructor(object, domElement) {
356
- super();
357
- const scope = this;
358
- const STATE = { NONE: -1, ROTATE: 0, ZOOM: 1, PAN: 2, TOUCH_ROTATE: 3, TOUCH_ZOOM_PAN: 4 };
359
- this.object = object;
360
- this.domElement = domElement;
361
- this.domElement.style.touchAction = "none";
362
- this.enabled = true;
363
- this.screen = { left: 0, top: 0, width: 0, height: 0 };
364
- this.rotateSpeed = 1;
365
- this.zoomSpeed = 1.2;
366
- this.panSpeed = 0.3;
367
- this.noRotate = false;
368
- this.noZoom = false;
369
- this.noPan = false;
370
- this.staticMoving = false;
371
- this.dynamicDampingFactor = 0.2;
372
- this.minDistance = 0;
373
- this.maxDistance = Infinity;
374
- this.minZoom = 0;
375
- this.maxZoom = Infinity;
376
- this.keys = [
377
- "KeyA",
378
- "KeyS",
379
- "KeyD"
380
- /*D*/
381
- ];
382
- this.mouseButtons = { LEFT: MOUSE.ROTATE, MIDDLE: MOUSE.DOLLY, RIGHT: MOUSE.PAN };
383
- this.target = new Vector3();
384
- const EPS = 1e-6;
385
- const lastPosition = new Vector3();
386
- let lastZoom = 1;
387
- let _state = STATE.NONE, _keyState = STATE.NONE, _touchZoomDistanceStart = 0, _touchZoomDistanceEnd = 0, _lastAngle = 0;
388
- const _eye = new Vector3(), _movePrev = new Vector2(), _moveCurr = new Vector2(), _lastAxis = new Vector3(), _zoomStart = new Vector2(), _zoomEnd = new Vector2(), _panStart = new Vector2(), _panEnd = new Vector2(), _pointers = [], _pointerPositions = {};
389
- this.target0 = this.target.clone();
390
- this.position0 = this.object.position.clone();
391
- this.up0 = this.object.up.clone();
392
- this.zoom0 = this.object.zoom;
393
- this.handleResize = function() {
394
- const box = scope.domElement.getBoundingClientRect();
395
- const d = scope.domElement.ownerDocument.documentElement;
396
- scope.screen.left = box.left + window.pageXOffset - d.clientLeft;
397
- scope.screen.top = box.top + window.pageYOffset - d.clientTop;
398
- scope.screen.width = box.width;
399
- scope.screen.height = box.height;
400
- };
401
- const getMouseOnScreen = (function() {
402
- const vector = new Vector2();
403
- return function getMouseOnScreen2(pageX, pageY) {
404
- vector.set(
405
- (pageX - scope.screen.left) / scope.screen.width,
406
- (pageY - scope.screen.top) / scope.screen.height
407
- );
408
- return vector;
409
- };
410
- })();
411
- const getMouseOnCircle = (function() {
412
- const vector = new Vector2();
413
- return function getMouseOnCircle2(pageX, pageY) {
414
- vector.set(
415
- (pageX - scope.screen.width * 0.5 - scope.screen.left) / (scope.screen.width * 0.5),
416
- (scope.screen.height + 2 * (scope.screen.top - pageY)) / scope.screen.width
417
- // screen.width intentional
418
- );
419
- return vector;
420
- };
421
- })();
422
- this.rotateCamera = (function() {
423
- const axis = new Vector3(), quaternion = new Quaternion(), eyeDirection = new Vector3(), objectUpDirection = new Vector3(), objectSidewaysDirection = new Vector3(), moveDirection = new Vector3();
424
- return function rotateCamera() {
425
- moveDirection.set(_moveCurr.x - _movePrev.x, _moveCurr.y - _movePrev.y, 0);
426
- let angle = moveDirection.length();
427
- if (angle) {
428
- _eye.copy(scope.object.position).sub(scope.target);
429
- eyeDirection.copy(_eye).normalize();
430
- objectUpDirection.copy(scope.object.up).normalize();
431
- objectSidewaysDirection.crossVectors(objectUpDirection, eyeDirection).normalize();
432
- objectUpDirection.setLength(_moveCurr.y - _movePrev.y);
433
- objectSidewaysDirection.setLength(_moveCurr.x - _movePrev.x);
434
- moveDirection.copy(objectUpDirection.add(objectSidewaysDirection));
435
- axis.crossVectors(moveDirection, _eye).normalize();
436
- angle *= scope.rotateSpeed;
437
- quaternion.setFromAxisAngle(axis, angle);
438
- _eye.applyQuaternion(quaternion);
439
- scope.object.up.applyQuaternion(quaternion);
440
- _lastAxis.copy(axis);
441
- _lastAngle = angle;
442
- } else if (!scope.staticMoving && _lastAngle) {
443
- _lastAngle *= Math.sqrt(1 - scope.dynamicDampingFactor);
444
- _eye.copy(scope.object.position).sub(scope.target);
445
- quaternion.setFromAxisAngle(_lastAxis, _lastAngle);
446
- _eye.applyQuaternion(quaternion);
447
- scope.object.up.applyQuaternion(quaternion);
448
- }
449
- _movePrev.copy(_moveCurr);
450
- };
451
- })();
452
- this.zoomCamera = function() {
453
- let factor;
454
- if (_state === STATE.TOUCH_ZOOM_PAN) {
455
- factor = _touchZoomDistanceStart / _touchZoomDistanceEnd;
456
- _touchZoomDistanceStart = _touchZoomDistanceEnd;
457
- if (scope.object.isPerspectiveCamera) {
458
- _eye.multiplyScalar(factor);
459
- } else if (scope.object.isOrthographicCamera) {
460
- scope.object.zoom = MathUtils.clamp(scope.object.zoom / factor, scope.minZoom, scope.maxZoom);
461
- if (lastZoom !== scope.object.zoom) {
462
- scope.object.updateProjectionMatrix();
463
- }
464
- } else {
465
- console.warn("THREE.TrackballControls: Unsupported camera type");
466
- }
467
- } else {
468
- factor = 1 + (_zoomEnd.y - _zoomStart.y) * scope.zoomSpeed;
469
- if (factor !== 1 && factor > 0) {
470
- if (scope.object.isPerspectiveCamera) {
471
- _eye.multiplyScalar(factor);
472
- } else if (scope.object.isOrthographicCamera) {
473
- scope.object.zoom = MathUtils.clamp(scope.object.zoom / factor, scope.minZoom, scope.maxZoom);
474
- if (lastZoom !== scope.object.zoom) {
475
- scope.object.updateProjectionMatrix();
476
- }
477
- } else {
478
- console.warn("THREE.TrackballControls: Unsupported camera type");
479
- }
480
- }
481
- if (scope.staticMoving) {
482
- _zoomStart.copy(_zoomEnd);
483
- } else {
484
- _zoomStart.y += (_zoomEnd.y - _zoomStart.y) * this.dynamicDampingFactor;
485
- }
486
- }
487
- };
488
- this.panCamera = (function() {
489
- const mouseChange = new Vector2(), objectUp = new Vector3(), pan = new Vector3();
490
- return function panCamera() {
491
- mouseChange.copy(_panEnd).sub(_panStart);
492
- if (mouseChange.lengthSq()) {
493
- if (scope.object.isOrthographicCamera) {
494
- const scale_x = (scope.object.right - scope.object.left) / scope.object.zoom / scope.domElement.clientWidth;
495
- const scale_y = (scope.object.top - scope.object.bottom) / scope.object.zoom / scope.domElement.clientWidth;
496
- mouseChange.x *= scale_x;
497
- mouseChange.y *= scale_y;
498
- }
499
- mouseChange.multiplyScalar(_eye.length() * scope.panSpeed);
500
- pan.copy(_eye).cross(scope.object.up).setLength(mouseChange.x);
501
- pan.add(objectUp.copy(scope.object.up).setLength(mouseChange.y));
502
- scope.object.position.add(pan);
503
- scope.target.add(pan);
504
- if (scope.staticMoving) {
505
- _panStart.copy(_panEnd);
506
- } else {
507
- _panStart.add(mouseChange.subVectors(_panEnd, _panStart).multiplyScalar(scope.dynamicDampingFactor));
508
- }
509
- }
510
- };
511
- })();
512
- this.checkDistances = function() {
513
- if (!scope.noZoom || !scope.noPan) {
514
- if (_eye.lengthSq() > scope.maxDistance * scope.maxDistance) {
515
- scope.object.position.addVectors(scope.target, _eye.setLength(scope.maxDistance));
516
- _zoomStart.copy(_zoomEnd);
517
- }
518
- if (_eye.lengthSq() < scope.minDistance * scope.minDistance) {
519
- scope.object.position.addVectors(scope.target, _eye.setLength(scope.minDistance));
520
- _zoomStart.copy(_zoomEnd);
521
- }
522
- }
523
- };
524
- this.update = function() {
525
- _eye.subVectors(scope.object.position, scope.target);
526
- if (!scope.noRotate) {
527
- scope.rotateCamera();
528
- }
529
- if (!scope.noZoom) {
530
- scope.zoomCamera();
531
- }
532
- if (!scope.noPan) {
533
- scope.panCamera();
534
- }
535
- scope.object.position.addVectors(scope.target, _eye);
536
- if (scope.object.isPerspectiveCamera) {
537
- scope.checkDistances();
538
- scope.object.lookAt(scope.target);
539
- if (lastPosition.distanceToSquared(scope.object.position) > EPS) {
540
- scope.dispatchEvent(_changeEvent);
541
- lastPosition.copy(scope.object.position);
542
- }
543
- } else if (scope.object.isOrthographicCamera) {
544
- scope.object.lookAt(scope.target);
545
- if (lastPosition.distanceToSquared(scope.object.position) > EPS || lastZoom !== scope.object.zoom) {
546
- scope.dispatchEvent(_changeEvent);
547
- lastPosition.copy(scope.object.position);
548
- lastZoom = scope.object.zoom;
549
- }
550
- } else {
551
- console.warn("THREE.TrackballControls: Unsupported camera type");
552
- }
553
- };
554
- this.reset = function() {
555
- _state = STATE.NONE;
556
- _keyState = STATE.NONE;
557
- scope.target.copy(scope.target0);
558
- scope.object.position.copy(scope.position0);
559
- scope.object.up.copy(scope.up0);
560
- scope.object.zoom = scope.zoom0;
561
- scope.object.updateProjectionMatrix();
562
- _eye.subVectors(scope.object.position, scope.target);
563
- scope.object.lookAt(scope.target);
564
- scope.dispatchEvent(_changeEvent);
565
- lastPosition.copy(scope.object.position);
566
- lastZoom = scope.object.zoom;
567
- };
568
- function onPointerDown(event) {
569
- if (scope.enabled === false) return;
570
- if (_pointers.length === 0) {
571
- scope.domElement.setPointerCapture(event.pointerId);
572
- scope.domElement.addEventListener("pointermove", onPointerMove);
573
- scope.domElement.addEventListener("pointerup", onPointerUp);
574
- }
575
- addPointer(event);
576
- if (event.pointerType === "touch") {
577
- onTouchStart(event);
578
- } else {
579
- onMouseDown(event);
580
- }
581
- }
582
- function onPointerMove(event) {
583
- if (scope.enabled === false) return;
584
- if (event.pointerType === "touch") {
585
- onTouchMove(event);
586
- } else {
587
- onMouseMove(event);
588
- }
589
- }
590
- function onPointerUp(event) {
591
- if (scope.enabled === false) return;
592
- if (event.pointerType === "touch") {
593
- onTouchEnd(event);
594
- } else {
595
- onMouseUp();
596
- }
597
- removePointer(event);
598
- if (_pointers.length === 0) {
599
- scope.domElement.releasePointerCapture(event.pointerId);
600
- scope.domElement.removeEventListener("pointermove", onPointerMove);
601
- scope.domElement.removeEventListener("pointerup", onPointerUp);
602
- }
603
- }
604
- function onPointerCancel(event) {
605
- removePointer(event);
606
- }
607
- function keydown(event) {
608
- if (scope.enabled === false) return;
609
- window.removeEventListener("keydown", keydown);
610
- if (_keyState !== STATE.NONE) {
611
- return;
612
- } else if (event.code === scope.keys[STATE.ROTATE] && !scope.noRotate) {
613
- _keyState = STATE.ROTATE;
614
- } else if (event.code === scope.keys[STATE.ZOOM] && !scope.noZoom) {
615
- _keyState = STATE.ZOOM;
616
- } else if (event.code === scope.keys[STATE.PAN] && !scope.noPan) {
617
- _keyState = STATE.PAN;
618
- }
619
- }
620
- function keyup() {
621
- if (scope.enabled === false) return;
622
- _keyState = STATE.NONE;
623
- window.addEventListener("keydown", keydown);
624
- }
625
- function onMouseDown(event) {
626
- if (_state === STATE.NONE) {
627
- switch (event.button) {
628
- case scope.mouseButtons.LEFT:
629
- _state = STATE.ROTATE;
630
- break;
631
- case scope.mouseButtons.MIDDLE:
632
- _state = STATE.ZOOM;
633
- break;
634
- case scope.mouseButtons.RIGHT:
635
- _state = STATE.PAN;
636
- break;
637
- }
638
- }
639
- const state = _keyState !== STATE.NONE ? _keyState : _state;
640
- if (state === STATE.ROTATE && !scope.noRotate) {
641
- _moveCurr.copy(getMouseOnCircle(event.pageX, event.pageY));
642
- _movePrev.copy(_moveCurr);
643
- } else if (state === STATE.ZOOM && !scope.noZoom) {
644
- _zoomStart.copy(getMouseOnScreen(event.pageX, event.pageY));
645
- _zoomEnd.copy(_zoomStart);
646
- } else if (state === STATE.PAN && !scope.noPan) {
647
- _panStart.copy(getMouseOnScreen(event.pageX, event.pageY));
648
- _panEnd.copy(_panStart);
649
- }
650
- scope.dispatchEvent(_startEvent);
651
- }
652
- function onMouseMove(event) {
653
- const state = _keyState !== STATE.NONE ? _keyState : _state;
654
- if (state === STATE.ROTATE && !scope.noRotate) {
655
- _movePrev.copy(_moveCurr);
656
- _moveCurr.copy(getMouseOnCircle(event.pageX, event.pageY));
657
- } else if (state === STATE.ZOOM && !scope.noZoom) {
658
- _zoomEnd.copy(getMouseOnScreen(event.pageX, event.pageY));
659
- } else if (state === STATE.PAN && !scope.noPan) {
660
- _panEnd.copy(getMouseOnScreen(event.pageX, event.pageY));
661
- }
662
- }
663
- function onMouseUp() {
664
- _state = STATE.NONE;
665
- scope.dispatchEvent(_endEvent);
666
- }
667
- function onMouseWheel(event) {
668
- if (scope.enabled === false) return;
669
- if (scope.noZoom === true) return;
670
- event.preventDefault();
671
- switch (event.deltaMode) {
672
- case 2:
673
- _zoomStart.y -= event.deltaY * 0.025;
674
- break;
675
- case 1:
676
- _zoomStart.y -= event.deltaY * 0.01;
677
- break;
678
- default:
679
- _zoomStart.y -= event.deltaY * 25e-5;
680
- break;
681
- }
682
- scope.dispatchEvent(_startEvent);
683
- scope.dispatchEvent(_endEvent);
684
- }
685
- function onTouchStart(event) {
686
- trackPointer(event);
687
- switch (_pointers.length) {
688
- case 1:
689
- _state = STATE.TOUCH_ROTATE;
690
- _moveCurr.copy(getMouseOnCircle(_pointers[0].pageX, _pointers[0].pageY));
691
- _movePrev.copy(_moveCurr);
692
- break;
693
- default:
694
- _state = STATE.TOUCH_ZOOM_PAN;
695
- const dx = _pointers[0].pageX - _pointers[1].pageX;
696
- const dy = _pointers[0].pageY - _pointers[1].pageY;
697
- _touchZoomDistanceEnd = _touchZoomDistanceStart = Math.sqrt(dx * dx + dy * dy);
698
- const x = (_pointers[0].pageX + _pointers[1].pageX) / 2;
699
- const y = (_pointers[0].pageY + _pointers[1].pageY) / 2;
700
- _panStart.copy(getMouseOnScreen(x, y));
701
- _panEnd.copy(_panStart);
702
- break;
703
- }
704
- scope.dispatchEvent(_startEvent);
705
- }
706
- function onTouchMove(event) {
707
- trackPointer(event);
708
- switch (_pointers.length) {
709
- case 1:
710
- _movePrev.copy(_moveCurr);
711
- _moveCurr.copy(getMouseOnCircle(event.pageX, event.pageY));
712
- break;
713
- default:
714
- const position = getSecondPointerPosition(event);
715
- const dx = event.pageX - position.x;
716
- const dy = event.pageY - position.y;
717
- _touchZoomDistanceEnd = Math.sqrt(dx * dx + dy * dy);
718
- const x = (event.pageX + position.x) / 2;
719
- const y = (event.pageY + position.y) / 2;
720
- _panEnd.copy(getMouseOnScreen(x, y));
721
- break;
722
- }
723
- }
724
- function onTouchEnd(event) {
725
- switch (_pointers.length) {
726
- case 0:
727
- _state = STATE.NONE;
728
- break;
729
- case 1:
730
- _state = STATE.TOUCH_ROTATE;
731
- _moveCurr.copy(getMouseOnCircle(event.pageX, event.pageY));
732
- _movePrev.copy(_moveCurr);
733
- break;
734
- case 2:
735
- _state = STATE.TOUCH_ZOOM_PAN;
736
- for (let i = 0; i < _pointers.length; i++) {
737
- if (_pointers[i].pointerId !== event.pointerId) {
738
- const position = _pointerPositions[_pointers[i].pointerId];
739
- _moveCurr.copy(getMouseOnCircle(position.x, position.y));
740
- _movePrev.copy(_moveCurr);
741
- break;
742
- }
743
- }
744
- break;
745
- }
746
- scope.dispatchEvent(_endEvent);
747
- }
748
- function contextmenu(event) {
749
- if (scope.enabled === false) return;
750
- event.preventDefault();
751
- }
752
- function addPointer(event) {
753
- _pointers.push(event);
754
- }
755
- function removePointer(event) {
756
- delete _pointerPositions[event.pointerId];
757
- for (let i = 0; i < _pointers.length; i++) {
758
- if (_pointers[i].pointerId == event.pointerId) {
759
- _pointers.splice(i, 1);
760
- return;
761
- }
762
- }
763
- }
764
- function trackPointer(event) {
765
- let position = _pointerPositions[event.pointerId];
766
- if (position === void 0) {
767
- position = new Vector2();
768
- _pointerPositions[event.pointerId] = position;
769
- }
770
- position.set(event.pageX, event.pageY);
771
- }
772
- function getSecondPointerPosition(event) {
773
- const pointer = event.pointerId === _pointers[0].pointerId ? _pointers[1] : _pointers[0];
774
- return _pointerPositions[pointer.pointerId];
775
- }
776
- this.dispose = function() {
777
- scope.domElement.removeEventListener("contextmenu", contextmenu);
778
- scope.domElement.removeEventListener("pointerdown", onPointerDown);
779
- scope.domElement.removeEventListener("pointercancel", onPointerCancel);
780
- scope.domElement.removeEventListener("wheel", onMouseWheel);
781
- scope.domElement.removeEventListener("pointermove", onPointerMove);
782
- scope.domElement.removeEventListener("pointerup", onPointerUp);
783
- window.removeEventListener("keydown", keydown);
784
- window.removeEventListener("keyup", keyup);
785
- };
786
- this.domElement.addEventListener("contextmenu", contextmenu);
787
- this.domElement.addEventListener("pointerdown", onPointerDown);
788
- this.domElement.addEventListener("pointercancel", onPointerCancel);
789
- this.domElement.addEventListener("wheel", onMouseWheel, { passive: false });
790
- window.addEventListener("keydown", keydown);
791
- window.addEventListener("keyup", keyup);
792
- this.handleResize();
793
- this.update();
794
- }
795
- };
796
-
797
- // src/singlecell.js
798
- async function init(arg, holder) {
799
- try {
800
- const obj = await load_json(arg);
801
- validate_obj(obj);
802
- obj.genome = arg.genome;
803
- obj.holder = holder.style("position", "relative");
804
- await init_view(obj);
805
- init_controlpanel(obj);
806
- await pcd_pipeline(obj);
807
- make_legend(arg, obj);
808
- } catch (e) {
809
- sayerror(holder, e.message || e);
810
- }
811
- }
812
- async function load_json(arg) {
813
- if (!arg.jsonfile) throw ".jsonfile missing";
814
- const tmp = await dofetch("textfile", { file: arg.jsonfile });
815
- if (tmp.error) throw tmp.error;
816
- return JSON.parse(tmp.text);
817
- }
818
- function validate_obj(obj) {
819
- if (!obj.cells) throw ".cells{} missing";
820
- if (!obj.cells.file) throw ".cells.file missing";
821
- if (!obj.cells.axis2columnidx) throw ".cells.axis2columnidx missing";
822
- if (obj.cells.categories) {
823
- if (!Array.isArray(obj.cells.categories)) throw ".cells.categories should be an array";
824
- if (obj.cells.categories.length == 0) throw ".cells.categories[] is empty array";
825
- for (const c of obj.cells.categories) {
826
- if (!Number.isInteger(c.columnidx)) throw "columnidx missing from category " + c;
827
- if (c.autocolor) {
828
- c.autocolor = ordinal(schemeCategory20);
829
- }
830
- }
831
- if (!Number.isInteger(obj.use_category_index)) {
832
- obj.use_category_index = 0;
833
- }
834
- if (!obj.cells.categories[obj.use_category_index]) throw "use_category_index out of bound";
835
- if (!obj.cells.categories[obj.use_category_index].hidden_types)
836
- obj.cells.categories[obj.use_category_index].hidden_types = [];
837
- }
838
- if (obj.gene_expression) {
839
- if (!obj.gene_expression.file) throw ".gene_expression.file missing";
840
- if (!Number.isInteger(obj.cells.barcodecolumnidx))
841
- throw ".gene_expression in use but .cells.barcodecolumnidx is missing";
842
- }
843
- if (!obj.width) obj.width = window.innerWidth * 0.9;
844
- if (!obj.height) obj.height = window.innerHeight * 0.9;
845
- }
846
- async function pcd_pipeline(obj) {
847
- if (Number.isInteger(obj.use_category_index)) {
848
- if (!obj.cells.categories[obj.use_category_index].hidden_types)
849
- obj.cells.categories[obj.use_category_index].hidden_types = [];
850
- }
851
- const data = await load_cell_pcd(obj);
852
- obj.data_sphere_r = data.data_sphere_r;
853
- if (!obj.camera.position.z) {
854
- obj.camera.position.z = obj.data_sphere_r * 3;
855
- obj.controls.maxDistance = obj.data_sphere_r * 4;
856
- obj.controls.minDistance = obj.data_sphere_r / 10;
857
- }
858
- const enc = new TextEncoder();
859
- const pcd_buffer = enc.encode(data.pcddata).buffer;
860
- render_cloud(obj, pcd_buffer);
861
- render_controlpanel(obj, data);
862
- animate();
863
- function animate() {
864
- requestAnimationFrame(animate);
865
- obj.controls.update();
866
- obj.renderer.render(obj.scene, obj.camera);
867
- }
868
- }
869
- async function load_cell_pcd(obj) {
870
- const wait = obj.holder.append("div").style("position", "absolute").style("top", 0).style("left", 0).style("padding", "10px").style("font-size", "1.5rem").text("Loading data...");
871
- const arg = {
872
- genome: obj.genome.name,
873
- textfile: obj.cells.file,
874
- delimiter: obj.cells.delimiter || " ",
875
- getpcd: {
876
- coord: obj.cells.axis2columnidx
877
- }
878
- };
879
- if (Number.isInteger(obj.use_category_index)) {
880
- if (!obj.cells.categories) throw "using category index but cells.categories[] missing";
881
- const cat = obj.cells.categories[obj.use_category_index];
882
- if (!cat) throw "category array index out of bound";
883
- arg.getpcd.category_index = cat.columnidx;
884
- if (cat.autocolor) {
885
- arg.getpcd.category_autocolor = true;
886
- if (cat.values_count) arg.getpcd.values_count = cat.values_count;
887
- } else if (cat.values) {
888
- arg.getpcd.category_customcolor = true;
889
- arg.getpcd.cat_values = cat.values;
890
- } else {
891
- if (!cat.autocolor && !cat.values) throw "categories.values[] are not defined";
892
- throw "unknow coloring scheme for category " + cat.name;
893
- }
894
- if (cat.hidden_types) {
895
- arg.hidden_types = cat.hidden_types;
896
- }
897
- if (obj.background_color) {
898
- arg.background_color = obj.background_color;
899
- }
900
- if (!cat.customorder) {
901
- arg.getpcd.category_autoorder = true;
902
- } else if (cat.customorder && cat.values) {
903
- arg.getpcd.category_customorder = true;
904
- arg.getpcd.cat_values = cat.values;
905
- } else {
906
- if (cat.customorder && !cat.values) throw "categories.values[] are not defined";
907
- throw "unknow ordering scheme for category " + cat.name;
908
- }
909
- obj.menu_button.html(cat.name + "&nbsp;&nbsp;&#9660;");
910
- } else if (Number.isInteger(obj.use_gene_index)) {
911
- const gene = obj.gene_expression.genes[obj.use_gene_index];
912
- obj.menu_button.html("Gene : " + gene.gene + "&nbsp;&nbsp;&#9660;");
913
- arg.getpcd.gene_expression = {
914
- file: obj.gene_expression.file,
915
- barcodecolumnidx: obj.cells.barcodecolumnidx,
916
- chr: gene.chr,
917
- start: gene.start,
918
- stop: gene.stop,
919
- autoscale: true,
920
- genename: gene.gene,
921
- color_min: obj.gene_expression.color_min,
922
- color_max: obj.gene_expression.color_max
923
- };
924
- if (obj.gene_expression.color_no_exp) arg.getpcd.gene_expression.color_no_exp = obj.gene_expression.color_no_exp;
925
- } else {
926
- throw "unknown method to color the cells";
927
- }
928
- return dofetch("singlecell", arg).then((data) => {
929
- if (data.error) throw data.error;
930
- wait.remove();
931
- return data;
932
- });
933
- }
934
- async function init_view(obj) {
935
- if (isWebGLAvailable() === false) {
936
- obj.holder.node().appendChild(getWebGLErrorMessage());
937
- return;
938
- }
939
- obj.scene = new Scene();
940
- if (obj.background_color) {
941
- obj.scene.background = new Color(obj.background_color);
942
- } else {
943
- obj.scene.background = new Color(16777215);
944
- }
945
- const default_zoom = obj.default_zoom ? 100 - obj.default_zoom : 45;
946
- obj.camera = new PerspectiveCamera(default_zoom, obj.width / obj.height, 0.1, 1e3);
947
- obj.camera.position.x = obj.canvas_2d ? 0 : 20;
948
- obj.camera.position.y = obj.canvas_2d ? 0 : -10;
949
- if (obj.canvas_2d) {
950
- obj.camera.up.set(0, 1, 0);
951
- } else {
952
- obj.camera.up.set(0, 0, 1);
953
- }
954
- obj.renderer = new WebGLRenderer({ antialias: true, preserveDrawingBuffer: true });
955
- obj.renderer.setPixelRatio(window.devicePixelRatio);
956
- obj.renderer.setSize(obj.width, obj.height);
957
- obj.renderer.domElement.style.backgroundColor = "#ffffff";
958
- obj.renderer.domElement.style.border = "solid #dddddd 2px";
959
- obj.renderer.outputColorSpace = LinearSRGBColorSpace;
960
- obj.renderer.toneMapping = NoToneMapping;
961
- obj.holder.style("display", "inline-block").style("position", "relative").node().appendChild(obj.renderer.domElement);
962
- obj.controls = new TrackballControls(obj.camera, obj.renderer.domElement);
963
- obj.controls.rotateSpeed = obj.canvas_2d ? 0 : 2;
964
- obj.controls.zoomSpeed = obj.canvas_2d ? 3 : 0.7;
965
- obj.controls.panSpeed = obj.canvas_2d ? 3 : 0.7;
966
- obj.controls.noZoom = true;
967
- obj.controls.noPan = false;
968
- obj.controls.staticMoving = true;
969
- obj.controls.dynamicDampingFactor = 0.3;
970
- obj.scene.add(obj.camera);
971
- obj.renderer.render(obj.scene, obj.camera);
972
- obj.controls.update();
973
- }
974
- function render_cloud(obj, pcd_buffer) {
975
- obj.scene.children.forEach(function(v, i) {
976
- if (v.material) {
977
- v.material.dispose();
978
- v.geometry.dispose();
979
- obj.scene.remove(v);
980
- }
981
- });
982
- const loader = new PCDLoader();
983
- const points = loader.parse(pcd_buffer, "");
984
- const newMat = new PointsMaterial({
985
- size: points.material.size,
986
- vertexColors: true,
987
- color: 16777215
988
- });
989
- points.material = newMat;
990
- points.material.vertexColors = true;
991
- points.material.color.set(16777215);
992
- points.material.needsUpdate = true;
993
- if (obj.point_size) {
994
- points.material.size = obj.point_size;
995
- } else {
996
- points.material.size = obj.canvas_2d ? 0.3 : 0.05;
997
- }
998
- obj.scene.add(points);
999
- obj.center = points.geometry.boundingSphere.center;
1000
- obj.controls.target.set(obj.center.x, obj.center.y, obj.center.z);
1001
- obj.controls.update();
1002
- }
1003
- function init_controlpanel(obj) {
1004
- obj.menu = new Menu();
1005
- obj.menu.d.style("padding", "3px");
1006
- obj.settings = new Menu();
1007
- obj.settings.d.style("padding", "3px");
1008
- const panel = obj.holder.append("div").style("padding", "10px").style("position", "absolute").style("border-radius", "5px").style("top", "20px").style("right", "20px").style("background-color", "#dddddd");
1009
- obj.menu_button = panel.append("button").style("display", "inline-block").style("padding", "4px").on("click", () => make_menu(obj));
1010
- const minimize_btn = obj.minimize_btn = panel.append("div").style("margin-left", "10px").style("display", "inline-block").style("padding-left", "0px").style("padding-right", "2px").style("float", "right").style("font-size", ".6em").classed("active", obj.menu_minimized ? true : false).text(obj.menu_minimized ? " SHOW" : " HIDE").on("click", () => {
1011
- obj.minimize_btn.classed("active", obj.minimize_btn.classed("active") ? false : true);
1012
- if (obj.minimize_btn.classed("active")) {
1013
- obj.minimize_btn.text(" SHOW");
1014
- obj.menu_output.style("display", "none");
1015
- } else {
1016
- obj.minimize_btn.text(" HIDE");
1017
- obj.menu_output.style("display", "block");
1018
- }
1019
- }).on("mouseover", () => {
1020
- minimize_btn.style("text-decoration", "underline");
1021
- }).on("mouseout", () => {
1022
- minimize_btn.style("text-decoration", "none");
1023
- });
1024
- obj.use_background_color = 0;
1025
- const config_btn = obj.settings_btn = panel.append("div").style("margin-left", "10px").style("display", "inline-block").style("padding-left", "3px").style("padding-right", "3px").style("float", "right").style("font-size", ".6em").text("CONFIG").on("click", () => make_settings(obj)).on("mouseover", () => {
1026
- config_btn.style("text-decoration", "underline");
1027
- }).on("mouseout", () => {
1028
- config_btn.style("text-decoration", "none");
1029
- });
1030
- obj.menu_output = panel.append("div").style("margin-top", "10px").style("display", obj.menu_minimized ? "none" : "block");
1031
- obj.show_zoom = true;
1032
- }
1033
- function render_controlpanel(obj, data) {
1034
- obj.menu_output.selectAll("*").remove();
1035
- if (data.category2color) {
1036
- const top_row = obj.menu_output.append("div").style("margin", "2px");
1037
- const select_all_checkbox = top_row.append("input").attr("type", "checkbox").style("margin-right", "10px").style("vertical-align", "top").style("display", "inline-block").on("change", () => {
1038
- if (select_all_checkbox.node().checked) {
1039
- obj.cells.categories[obj.use_category_index].hidden_types = [];
1040
- pcd_pipeline(obj);
1041
- } else {
1042
- for (const type in data.category2color) {
1043
- obj.cells.categories[obj.use_category_index].hidden_types.push(type);
1044
- }
1045
- pcd_pipeline(obj);
1046
- }
1047
- });
1048
- if (obj.cells.categories[obj.use_category_index].hidden_types.length == 0) {
1049
- select_all_checkbox.property("checked", 1);
1050
- }
1051
- top_row.append("span").text("Select All").style("font-size", ".8em").attr("font-family", font);
1052
- for (const type in data.category2color) {
1053
- const row = obj.menu_output.append("div").style("margin", "2px");
1054
- const checkbox = row.append("input").attr("type", "checkbox").property("checked", 1).style("margin-right", "10px").style("vertical-align", "top").style("display", "inline-block").on("change", () => {
1055
- if (obj.cells.categories[obj.use_category_index].hidden_types.includes(type)) {
1056
- const index = obj.cells.categories[obj.use_category_index].hidden_types.indexOf(type);
1057
- if (index !== -1) obj.cells.categories[obj.use_category_index].hidden_types.splice(index, 1);
1058
- checkbox.property("checked", 1);
1059
- } else {
1060
- obj.cells.categories[obj.use_category_index].hidden_types.push(type);
1061
- }
1062
- pcd_pipeline(obj);
1063
- });
1064
- if (obj.cells.categories[obj.use_category_index].hidden_types.includes(type)) {
1065
- checkbox.property("checked", 0);
1066
- }
1067
- row.append("div").style("display", "inline-block").style("height", "15px").style("width", "15px").style("background-color", data.category2color[type]).style("margin-right", "10px");
1068
- row.append("span").text(type).attr("font-family", font);
1069
- row.append("span").html("&nbsp;n=" + data.categorycount[type]).attr("font-family", font).style("font-size", ".8em").style("float", "right").style("color", "#777");
1070
- }
1071
- } else if (data.maxexpvalue) {
1072
- const scale_height = 30;
1073
- const scale_width = 150;
1074
- const scale_div = obj.menu_output.append("div").style("margin", "10px").style("width", "120px").style("height", "100px");
1075
- scale_div.append("div").text("Gene Expression " + obj.gene_expression.datatype).style("text-align", "center").style("width", "150px").style("margin-bottom", "20px");
1076
- const svg = scale_div.append("svg").append("g");
1077
- const colorRange = [obj.gene_expression.color_max, obj.gene_expression.color_min];
1078
- const colorScale = linear().range(colorRange).domain([data.minexpvalue, data.maxexpvalue]);
1079
- const defs = svg.append("defs");
1080
- const linearGradient = defs.append("linearGradient").attr("id", "linear-gradient");
1081
- linearGradient.append("stop").attr("offset", "0%").attr("stop-color", colorScale(data.maxexpvalue));
1082
- linearGradient.append("stop").attr("offset", "100%").attr("stop-color", colorScale(data.minexpvalue));
1083
- svg.append("rect").attr("x", 0).attr("y", 0).attr("width", scale_width).attr("height", scale_height).attr("transform", "translate(12, 0)").style("fill", "url(#linear-gradient)");
1084
- const y = linear().range([0, scale_width]).domain([data.minexpvalue, data.maxexpvalue]);
1085
- const legendAxis = axisBottom().scale(y).ticks(5);
1086
- svg.append("g").attr("class", "legend axis").attr("transform", "translate(12," + scale_height + ")").call(legendAxis);
1087
- const stats_div = obj.menu_output.append("div").style("padding-bottom", "20px").style("text-align", "center");
1088
- stats_div.append("p").style("font-size", "13px").style("margin", "2px 0").html("<b>Cells with Expression Data</b> ");
1089
- stats_div.append("p").style("font-size", "13px").style("margin", "2px 0").html(data.numbercellwithgeneexp + " / " + data.numbercelltotal);
1090
- const no_exp_div = stats_div.append("div").style("display", "block").style("margin-top", "10px");
1091
- no_exp_div.append("div").style("display", "inline-block").style("height", "15px").style("width", "15px").style("background-color", obj.gene_expression.color_no_exp ? obj.gene_expression.color_no_exp : "#2C2C2C").style("margin-right", "10px");
1092
- no_exp_div.append("div").style("display", "inline-block").style("font-size", "13px").html(" Cells without Expression");
1093
- const boxplot_div = obj.menu_output.append("div");
1094
- boxplot_div.append("div").style("display", "block").style("padding", "5px").html("Violinplot / Boxplot of </br> Expression by");
1095
- const boxplot_cat_select = boxplot_div.append("select").style("display", "block");
1096
- boxplot_cat_select.append("option").attr("value", "none").text("-- Select--");
1097
- if (obj.cells.categories) {
1098
- obj.cells.categories.forEach((category, i) => {
1099
- boxplot_cat_select.append("option").attr("value", category.columnidx).text(category.name);
1100
- });
1101
- }
1102
- boxplot_cat_select.on("change", () => {
1103
- const gene = obj.gene_expression.genes[obj.use_gene_index];
1104
- const cat = obj.cells.categories[parseInt(boxplot_cat_select.node().selectedIndex) - 1];
1105
- const arg = {
1106
- genome: obj.genome.name,
1107
- getgeneboxplot: {
1108
- expfile: obj.gene_expression.file,
1109
- chr: gene.chr,
1110
- start: gene.start,
1111
- stop: gene.stop,
1112
- genename: gene.gene,
1113
- cellfile: obj.cells.file,
1114
- barcodecolumnidx: obj.cells.barcodecolumnidx,
1115
- categorycolumnidx: parseInt(boxplot_cat_select.node().value),
1116
- delimiter: obj.cells.delimiter || " ",
1117
- category_customorder: cat.customorder && cat.values ? true : false,
1118
- category_autoorder: !cat.customorder ? true : false,
1119
- cat_values: cat.values,
1120
- values_count: cat.values_count
1121
- }
1122
- };
1123
- dofetch("singlecell", arg).then((data2) => {
1124
- if (data2.error) throw data2.error;
1125
- obj.box_plot = new Menu();
1126
- make_plot(data2, obj, boxplot_cat_select.node().value);
1127
- });
1128
- });
1129
- }
1130
- make_zoom_panel(obj);
1131
- }
1132
- function make_zoom_panel(obj) {
1133
- if (obj.show_zoom) {
1134
- const zoom_div = obj.menu_output.append("div").style("display", "block").text("Zoom").style("margin", "10px 5px 5px 5px").style("padding-top", "10px").style("border-top", "1px solid #929292");
1135
- const zoom_hide_btn = zoom_div.append("div").style("margin-left", "10px").style("display", "inline-block").style("padding-left", "0px").style("padding-right", "2px").style("float", "right").style("font-size", ".6em").text("MOVE TO CONFIG").on("click", () => {
1136
- zoom_div.node().remove();
1137
- obj.show_zoom = false;
1138
- }).on("mouseover", () => {
1139
- zoom_hide_btn.style("text-decoration", "underline");
1140
- }).on("mouseout", () => {
1141
- zoom_hide_btn.style("text-decoration", "none");
1142
- });
1143
- obj.zoom_slider = zoom_div.append("input").style("display", "block").style("padding", "5px").attr("type", "range").attr("min", 1).attr("max", 100).attr("value", obj.camera.fov).style("direction", "rtl").on("change", () => {
1144
- obj.camera.fov = parseInt(obj.zoom_slider.node().value);
1145
- obj.camera.updateProjectionMatrix();
1146
- }).on("mousedown", (event) => {
1147
- event.stopPropagation();
1148
- });
1149
- }
1150
- }
1151
- function make_menu(obj) {
1152
- obj.menu.clear().showunder(obj.menu_button.node());
1153
- if (obj.cells.categories) {
1154
- obj.cells.categories.forEach((category, i) => {
1155
- if (i != obj.use_category_index) {
1156
- obj.menu.d.append("div").text(category.name).attr("class", "sja_menuoption").on("click", async () => {
1157
- obj.menu.hide();
1158
- obj.use_category_index = i;
1159
- pcd_pipeline(obj);
1160
- }).append("span").attr("font-family", font).style("display", category.values_count ? "inline-block" : "none").style("font-size", ".8em").style("float", "right").style("color", "#777").style("padding", "3px 5px").html(category.values_count ? "&nbsp;n=" + category.values_count : "");
1161
- }
1162
- });
1163
- }
1164
- if (obj.gene_expression) {
1165
- obj.menu.d.append("div").text("Gene expression").attr("class", "sja_menuoption").on("click", () => {
1166
- obj.menu.clear();
1167
- const gene_search_div = obj.menu.d.append("div").style("padding", "10px");
1168
- gene_searchbox({
1169
- div: gene_search_div.append("div"),
1170
- resultdiv: gene_search_div.append("div"),
1171
- genome: obj.genome.name,
1172
- callback: async (genename) => {
1173
- const gmlst = await findgenemodel_bysymbol(obj.genome.name, genename);
1174
- if (gmlst && gmlst[0]) {
1175
- const gm = gmlst[0];
1176
- if (!obj.gene_expression.genes) obj.gene_expression.genes = [];
1177
- const geneidx = obj.gene_expression.genes.findIndex((i) => i.gene == genename);
1178
- if (geneidx == -1) {
1179
- obj.gene_expression.genes.push({
1180
- gene: genename,
1181
- chr: gm.chr,
1182
- start: gm.start,
1183
- stop: gm.stop
1184
- });
1185
- obj.use_gene_index = obj.gene_expression.genes.length - 1;
1186
- } else {
1187
- obj.use_gene_index = geneidx;
1188
- }
1189
- }
1190
- obj.use_category_index = null;
1191
- obj.menu.hide();
1192
- pcd_pipeline(obj);
1193
- }
1194
- });
1195
- });
1196
- obj.menu.d.append("div").text("Multi-Gene Heatmap").attr("class", "sja_menuoption").on("click", () => {
1197
- heatmap_menu(obj);
1198
- });
1199
- if (obj.gene_expression.genes) {
1200
- if (obj.gene_expression.genes.length > 1) {
1201
- obj.menu.d.append("div").style("padding", "5px 10px").text("Previously Selected");
1202
- }
1203
- obj.gene_expression.genes.forEach((gene, i) => {
1204
- if (i != obj.use_gene_index) {
1205
- obj.menu.d.append("div").text("Gene : " + gene.gene).attr("class", "sja_menuoption").on("click", async () => {
1206
- obj.menu.hide();
1207
- obj.use_category_index = null;
1208
- obj.use_gene_index = i;
1209
- pcd_pipeline(obj);
1210
- });
1211
- }
1212
- });
1213
- }
1214
- }
1215
- }
1216
- function make_settings(obj) {
1217
- obj.settings.clear().showunder(obj.settings_btn.node());
1218
- const back_color_div = obj.settings.d.append("div").style("display", "block").text("Background Color").style("margin", "5px");
1219
- const black_div = back_color_div.append("div").style("margin", "5px").style("display", "block");
1220
- const name = Math.random(), idblack = Math.random(), idwhite = Math.random();
1221
- const inputblack = black_div.append("input").attr("type", "radio").style("display", "inline-block").attr("name", name).attr("id", idblack).on("change", toggle_background);
1222
- black_div.append("label").style("display", "inline-block").style("font-size", ".8em").text("Black").style("padding-left", "10px").attr("for", idblack);
1223
- const white_div = back_color_div.append("div").style("margin", "5px").style("display", "block");
1224
- const inputwhite = white_div.append("input").attr("type", "radio").style("display", "inline-block").attr("name", name).attr("id", idwhite).on("change", toggle_background);
1225
- white_div.append("label").style("display", "inline-block").style("font-size", ".8em").text("White").style("padding-left", "10px").attr("for", idwhite);
1226
- if (obj.use_background_color == 0) {
1227
- inputwhite.property("checked", 1);
1228
- } else {
1229
- inputblack.property("checked", 1);
1230
- }
1231
- function toggle_background() {
1232
- const isblack = obj.background_color == "black";
1233
- obj.scene.background = new Color(isblack ? 16777215 : 0);
1234
- obj.use_background_color = isblack ? 0 : 1;
1235
- obj.background_color = isblack ? "white" : "black";
1236
- }
1237
- const point_size_div = obj.settings.d.append("div").style("display", "block").text("Point Size").style("margin", "20px 5px");
1238
- const point_size_slider = point_size_div.append("input").style("display", "block").style("padding", "5px").attr("type", "range").attr("min", 1).attr("max", 70).attr("value", obj.scene.children[1].material.size * 100).on("change", () => {
1239
- obj.scene.children[1].material.size = point_size_slider.node().value / 100;
1240
- });
1241
- if (obj.show_zoom == false) {
1242
- const zoom_div = obj.settings.d.append("div").style("display", "block").text("Zoom").style("margin", "20px 5px");
1243
- const zoom_hide_btn = zoom_div.append("div").style("margin-left", "10px").style("display", "inline-block").style("padding-left", "0px").style("padding-right", "2px").style("float", "right").style("font-size", ".6em").html("MOVE TO </br>LEGEND PANEL").on("click", () => {
1244
- zoom_div.node().remove();
1245
- obj.show_zoom = true;
1246
- make_zoom_panel(obj);
1247
- }).on("mouseover", () => {
1248
- zoom_hide_btn.style("text-decoration", "underline");
1249
- }).on("mouseout", () => {
1250
- zoom_hide_btn.style("text-decoration", "none");
1251
- });
1252
- obj.zoom_slider = zoom_div.append("input").style("display", "block").style("padding", "5px").attr("type", "range").attr("min", 5).attr("max", 70).attr("value", obj.camera.fov).style("direction", "rtl").on("change", () => {
1253
- obj.camera.fov = parseInt(obj.zoom_slider.node().value);
1254
- obj.camera.updateProjectionMatrix();
1255
- });
1256
- }
1257
- obj.settings.d.append("div").style("margin", "5px").text("Panning");
1258
- obj.settings.d.append("div").style("font-size", ".8em").style("text-align", "center").style("margin-bottom", "10px").html('<p style="margin:3px;">Right mouse click </br>+ Mouse move</p>');
1259
- if (!obj.canvas_2d) {
1260
- obj.settings.d.append("div").style("margin", "5px").text("Rotate");
1261
- obj.settings.d.append("div").style("font-size", ".8em").style("text-align", "center").style("margin-bottom", "10px").html('<p style="margin:3px;">Left mouse click </br>+ Mouse move</p>');
1262
- }
1263
- obj.settings.d.append("div").attr("class", "sja_menuoption").text("Reset view").style("width", "80px").style("margin", "auto").style("margin-top", "15px").style("margin-bottom", "15px").on("click", () => {
1264
- inputwhite.property("checked", 1);
1265
- obj.scene.background = new Color(obj.background_color ? obj.background_color : 16777215);
1266
- point_size_slider.node().value = obj.point_size ? obj.point_size * 100 : obj.canvas_2d ? 30 : 5;
1267
- obj.scene.children[1].material.size = obj.point_size ? obj.point_size : obj.canvas_2d ? 0.3 : 0.05;
1268
- obj.camera.position.z = obj.data_sphere_r * 3;
1269
- obj.camera.position.x = obj.canvas_2d ? 0 : 20;
1270
- obj.camera.position.y = obj.canvas_2d ? 0 : -10;
1271
- const cam_fov_default = 45;
1272
- obj.camera.fov = parseInt(cam_fov_default);
1273
- obj.camera.updateProjectionMatrix();
1274
- obj.zoom_slider.node().value = cam_fov_default;
1275
- if (obj.canvas_2d) {
1276
- obj.camera.up.set(0, 1, 0);
1277
- } else {
1278
- obj.camera.up.set(0, 0, 1);
1279
- }
1280
- obj.controls.target.set(obj.center.x, obj.center.y, obj.center.z);
1281
- });
1282
- const screenshot_btn = obj.settings.d.append("div").attr("class", "sja_menuoption").style("padding", "5px").style("width", "80px").style("margin", "auto").style("margin-top", "15px").style("margin-bottom", "15px").html("<b>&#10697;</b> Capture").on("mousedown", () => {
1283
- const imgData = obj.renderer.domElement.toDataURL();
1284
- let imgNode = document.createElement("img");
1285
- imgNode.src = imgData;
1286
- screenshot_btn.append("span").style("display", "none").html(
1287
- '<a download="scRNA_' + (/* @__PURE__ */ new Date()).toLocaleString() + '.png" href="' + imgNode.src + '" title="ImageName">Camera</a>'
1288
- );
1289
- }).on("mouseup", () => {
1290
- screenshot_btn.select("a").node().click();
1291
- screenshot_btn.selectAll("span").remove();
1292
- });
1293
- }
1294
- function heatmap_menu(obj) {
1295
- obj.menu.clear();
1296
- obj.gene_expression.heatmap_genes = [];
1297
- obj.use_heatmap_category_index = null;
1298
- const heatmap_menu_div = obj.menu.d.append("div").style("display", "block").style("padding", "10px");
1299
- const genes_div = heatmap_menu_div.append("div").style("display", "block");
1300
- const gene_search_div = genes_div.append("div").style("display", "inline-block").style("vertical-align", "top").style("padding", "10px");
1301
- gene_search_div.append("div").style("display", "block").style("padding-bottom", "5px").text("Add Genes");
1302
- gene_search_div.append("textarea").attr("rows", "4").attr("cols", "20").attr("placeholder", "Type gene names seperated by space");
1303
- const catagory_div = heatmap_menu_div.append("div");
1304
- catagory_div.append("div").style("display", "block").style("padding-bottom", "5px").style("padding-left", "10px").text("Heatmap by");
1305
- const cat_select = catagory_div.append("select").style("display", "block").style("margin-left", "10px");
1306
- cat_select.append("option").attr("value", "none").text("-- Select--");
1307
- if (obj.cells.categories) {
1308
- obj.cells.categories.forEach((category, i) => {
1309
- cat_select.append("option").attr("value", category.columnidx).text(category.name);
1310
- });
1311
- }
1312
- cat_select.on("change", () => {
1313
- obj.use_heatmap_category_index = parseInt(cat_select.node().value);
1314
- });
1315
- heatmap_menu_div.append("button").text("Heatmap").style("display", "block").style("float", "right").style("margin", "5px").on("click", async () => {
1316
- const input_genelist = gene_search_div.select("textarea").node().value;
1317
- const genelist = input_genelist.split(" ");
1318
- for (const gene of genelist) {
1319
- const gmlst = await findgenemodel_bysymbol(obj.genome.name, gene);
1320
- if (gmlst && gmlst[0]) {
1321
- const gm = gmlst[0];
1322
- if (!obj.gene_expression.heatmap_genes) obj.gene_expression.heatmap_genes = [];
1323
- const geneidx = obj.gene_expression.heatmap_genes.findIndex((i) => i.gene == gene);
1324
- if (geneidx == -1) {
1325
- obj.gene_expression.heatmap_genes.push({
1326
- gene,
1327
- chr: gm.chr,
1328
- start: gm.start,
1329
- stop: gm.stop
1330
- });
1331
- }
1332
- }
1333
- }
1334
- const arg = {
1335
- genome: obj.genome.name,
1336
- getheatmap: {
1337
- expfile: obj.gene_expression.file,
1338
- gene_list: obj.gene_expression.heatmap_genes,
1339
- cellfile: obj.cells.file,
1340
- barcodecolumnidx: obj.cells.barcodecolumnidx,
1341
- categorycolumnidx: parseInt(cat_select.node().value),
1342
- delimiter: obj.cells.delimiter || " "
1343
- }
1344
- };
1345
- dofetch("singlecell", arg).then((data) => {
1346
- if (data.error) throw data.error;
1347
- obj.menu.hide();
1348
- make_heatmap(data, obj, cat_select.node().value);
1349
- });
1350
- });
1351
- }
1352
- function make_plot(data, obj, colidx) {
1353
- const gene = obj.gene_expression.genes[obj.use_gene_index];
1354
- const pane = newpane({ x: 600, y: 400 });
1355
- const cat = obj.cells.categories.find((x) => x.columnidx == colidx);
1356
- pane.header.text("Violinplot/Boxplot for " + gene.gene + " Expression by " + cat.name);
1357
- const control_panel = pane.pane.append("div").style("margin", "10px 10px 10px 15px");
1358
- const svg = pane.pane.append("svg").style("margin", "10px");
1359
- const plot_select = control_panel.append("select").style("display", "inline-block");
1360
- plot_select.append("option").attr("value", "violin").text("Violin Plot");
1361
- plot_select.append("option").attr("value", "box").text("Box Plot");
1362
- plot_select.on("change", () => {
1363
- apply();
1364
- });
1365
- const cell_select_div = control_panel.append("div").style("display", "inline-block").style("padding-left", "15px").text("Cells without expression");
1366
- const cell_select = cell_select_div.append("select").style("display", "inline-block").style("margin-left", "5px");
1367
- cell_select.append("option").attr("value", "include").text("Include");
1368
- cell_select.append("option").attr("value", "exclude").text("Exclude");
1369
- cell_select.on("change", () => {
1370
- apply();
1371
- });
1372
- make_violin_plot(data, svg);
1373
- function apply() {
1374
- const gene2 = obj.gene_expression.genes[obj.use_gene_index];
1375
- const arg = {
1376
- genome: obj.genome.name,
1377
- getgeneboxplot: {
1378
- expfile: obj.gene_expression.file,
1379
- chr: gene2.chr,
1380
- start: gene2.start,
1381
- stop: gene2.stop,
1382
- genename: gene2.gene,
1383
- cellfile: obj.cells.file,
1384
- barcodecolumnidx: obj.cells.barcodecolumnidx,
1385
- categorycolumnidx: parseInt(colidx),
1386
- delimiter: obj.cells.delimiter || " ",
1387
- category_customorder: cat.customorder && cat.values ? true : false,
1388
- category_autoorder: !cat.customorder ? true : false,
1389
- cat_values: cat.values,
1390
- values_count: cat.values_count
1391
- }
1392
- };
1393
- if (cell_select.node().value == "exclude") {
1394
- arg.getgeneboxplot.exclude_cells = true;
1395
- }
1396
- dofetch("singlecell", arg).then((data2) => {
1397
- if (data2.error) throw data2.error;
1398
- if (plot_select.node().value == "box") make_box_plot(data2, svg);
1399
- else if (plot_select.node().value == "violin") make_violin_plot(data2, svg);
1400
- });
1401
- }
1402
- }
1403
- function make_violin_plot(data, svg) {
1404
- svg.selectAll("*").remove();
1405
- let box_height = 50, box_width = 200, barspace = 2, axis_height = 30;
1406
- const label_width = get_max_labelwidth(data.boxplots, svg);
1407
- const x_scale = linear().range([0, box_width]).domain([data.minexpvalue, data.maxexpvalue]);
1408
- const y_scale = linear().range([box_height, 0]).domain([0, 1]);
1409
- const svg_height = data.boxplots.length * (box_height + barspace) + axis_height;
1410
- const svg_width = box_width + label_width + 20;
1411
- svg.transition().attr("width", svg_width).attr("height", svg_height);
1412
- if (data.boxplots) {
1413
- data.boxplots.forEach((boxplot, i) => {
1414
- const g = svg.append("g").attr("transform", "translate(" + label_width + "," + (i * (box_height + barspace) + axis_height) + ")");
1415
- const xlabel = g.append("text").text(boxplot.category + " (" + boxplot.numberofcells + ")").attr("transform", "translate(-4," + box_height / 2 + ")").attr("text-anchor", "end").attr("font-size", 15).attr("font-family", font).attr("dominant-baseline", "central");
1416
- if (boxplot.density) {
1417
- const density_max = Math.max(...boxplot.density);
1418
- const line = line_default().x(function(d, j) {
1419
- return x_scale(j * data.maxexpvalue / boxplot.density.length);
1420
- }).y(function(d) {
1421
- return y_scale(d / density_max) / 2;
1422
- }).curve(monotoneX);
1423
- const area = area_default().x(function(d, j) {
1424
- return x_scale(j * data.maxexpvalue / boxplot.density.length);
1425
- }).y0(function(d) {
1426
- const temp = y_scale(d / density_max) / 2;
1427
- return box_height - temp;
1428
- }).y1(function(d) {
1429
- return y_scale(d / density_max) / 2;
1430
- }).curve(monotoneX);
1431
- g.append("path").datum(boxplot.density).attr("class", "area").attr("d", area).style("fill", boxplot.color).style("stroke", "black").style("stroke-width", 0.5);
1432
- }
1433
- });
1434
- const legendAxis = axisTop().scale(x_scale).ticks(5);
1435
- svg.append("g").attr("class", "legend axis").attr("transform", "translate(" + label_width + "," + (axis_height - 10) + ")").call(legendAxis);
1436
- }
1437
- }
1438
- function make_box_plot(data, svg) {
1439
- svg.selectAll("*").remove();
1440
- let box_height = 36, box_width = 200, barspace = 16, axis_height = 30;
1441
- const label_width = get_max_labelwidth(data.boxplots, svg);
1442
- const x_scale = linear().range([0, box_width]).domain([data.minexpvalue, data.maxexpvalue]);
1443
- const y_scale = linear().range([box_height, 0]).domain([0, 1]);
1444
- const svg_height = data.boxplots.length * (box_height + barspace) + axis_height;
1445
- const svg_width = box_width + label_width + 20;
1446
- svg.transition().attr("width", svg_width).attr("height", svg_height);
1447
- if (data.boxplots) {
1448
- data.boxplots.forEach((boxplot, i) => {
1449
- const g = svg.append("g").attr("transform", "translate(" + label_width + "," + (i * (box_height + barspace) + axis_height) + ")");
1450
- const xlabel = g.append("text").text(boxplot.category + " (" + boxplot.numberofcells + ")").attr("transform", "translate(-4," + box_height / 2 + ")").attr("text-anchor", "end").attr("font-size", 15).attr("font-family", font).attr("dominant-baseline", "central");
1451
- if (boxplot.p75) {
1452
- g.append("line").attr("x1", x_scale(boxplot.w1)).attr("y1", box_height / 2).attr("x2", x_scale(boxplot.w2)).attr("y2", box_height / 2).attr("stroke-width", 2).attr("stroke", "black");
1453
- g.append("rect").attr("x", x_scale(boxplot.p25)).attr("y", 0).attr("width", x_scale(boxplot.p75 - boxplot.p25)).attr("height", box_height).attr("fill", boxplot.color);
1454
- g.append("line").attr("x1", x_scale(boxplot.w1)).attr("y1", 0).attr("x2", x_scale(boxplot.w1)).attr("y2", box_height).attr("stroke-width", 2).attr("stroke", "black");
1455
- g.append("line").attr("x1", x_scale(boxplot.p50)).attr("y1", 0).attr("x2", x_scale(boxplot.p50)).attr("y2", box_height).attr("stroke-width", 2).attr("stroke", "white");
1456
- g.append("line").attr("x1", x_scale(boxplot.w2)).attr("y1", 0).attr("x2", x_scale(boxplot.w2)).attr("y2", box_height).attr("stroke-width", 2).attr("stroke", "black");
1457
- if (boxplot.out) {
1458
- for (const outlier of boxplot.out) {
1459
- g.append("circle").attr("cx", x_scale(outlier.value)).attr("cy", box_height / 2).attr("r", 2).attr("fill", "#901739");
1460
- }
1461
- }
1462
- }
1463
- });
1464
- const legendAxis = axisTop().scale(x_scale).ticks(5);
1465
- svg.append("g").attr("class", "legend axis").attr("transform", "translate(" + label_width + "," + (axis_height - 10) + ")").call(legendAxis);
1466
- }
1467
- }
1468
- function make_heatmap(data, obj, colidx) {
1469
- const pane = newpane({ x: 600, y: 400 });
1470
- const cat = obj.cells.categories.find((x) => x.columnidx == colidx);
1471
- pane.header.text("Heatmap for Gene Expression by " + cat.name);
1472
- const svg = pane.pane.append("svg").style("margin", "10px");
1473
- let gene_list = [];
1474
- for (const gene of data.gene_heatmap) gene_list.push(gene.genename);
1475
- let means = [];
1476
- data.gene_heatmap.forEach((gene, i) => {
1477
- data.gene_heatmap[i].heatmap.forEach((category) => {
1478
- means.push(category.mean);
1479
- });
1480
- });
1481
- const max_mean = Math.max(...means);
1482
- let categories = [];
1483
- for (const category of data.gene_heatmap[0].heatmap)
1484
- categories.push(category.category + " (" + category.numberofcells + ")");
1485
- let box_height = 20, box_width = 80, barspace = 2, gene_lable_height = 30, legend_width = 60;
1486
- const label_width = get_max_labelwidth(data.gene_heatmap[0].heatmap, svg);
1487
- const svg_height = (box_height + barspace) * categories.length + gene_lable_height;
1488
- const svg_width = (box_width + barspace) * gene_list.length + label_width + legend_width + 20;
1489
- svg.transition().attr("width", svg_width).attr("height", svg_height);
1490
- const x_scale = band().range([0, (box_width + barspace) * gene_list.length]).domain(gene_list).padding(0.05);
1491
- svg.append("g").style("font-size", 15).attr("transform", "translate(" + label_width + ",0)").call(axisBottom(x_scale).tickSize(0)).select(".domain").remove();
1492
- const y_scale = band().range([(box_height + barspace) * categories.length, 0]).domain(categories).padding(0.05);
1493
- svg.append("g").style("font-size", 15).attr("transform", "translate(" + label_width + "," + gene_lable_height + ")").call(axisLeft(y_scale).tickSize(0)).select(".domain").remove();
1494
- var myColor = sequential().interpolator(plasma).domain([0, max_mean]);
1495
- const div = pane.pane.append("div").style("position", "absolute").attr("class", "tooltip").style("background-color", "white").style("border", "solid").style("border-width", "2px").style("border-radius", "5px").style("padding", "5px").style("opacity", 0);
1496
- data.gene_heatmap.forEach((gene, i) => {
1497
- data.gene_heatmap[i].heatmap.forEach((category, j) => {
1498
- const g = svg.append("g").attr("transform", "translate(" + label_width + "," + gene_lable_height + ")");
1499
- g.append("rect").attr("x", x_scale(gene.genename)).attr("y", y_scale(category.category + " (" + category.numberofcells + ")")).attr("width", x_scale.bandwidth()).attr("height", y_scale.bandwidth()).style("fill", myColor(category.mean)).style("stroke-width", 4).style("stroke", "none").style("opacity", 0.8).on("mouseover", function(event) {
1500
- div.transition().duration(200).style("opacity", 0.9);
1501
- div.html("Mean Expression: " + category.mean).style("left", pointer_default(event, this)[0] + 70 + "px").style("top", pointer_default(event, this)[1] + 20 + "px");
1502
- }).on("mouseout", function() {
1503
- div.transition().duration(500).style("opacity", 0);
1504
- });
1505
- });
1506
- });
1507
- const legend_data = myColor.ticks(10).reverse();
1508
- legend_data.unshift(max_mean.toFixed(2));
1509
- const legend = svg.selectAll(".legend").data(legend_data).enter().append("g").attr("class", "legend").attr("transform", function(d, i) {
1510
- return "translate(" + (svg_width - legend_width) + "," + (30 + i * 20) + ")";
1511
- });
1512
- legend.append("rect").attr("width", 20).attr("height", 20).style("fill", myColor).style("opacity", 0.8);
1513
- legend.append("text").attr("x", 26).attr("y", 10).attr("dy", ".35em").text(String);
1514
- }
1515
- function get_max_labelwidth(items, svg) {
1516
- let textwidth = 0;
1517
- for (const i of items) {
1518
- svg.append("text").text(i.category + " (" + i.numberofcells + ")").attr("font-family", font).attr("font-size", 15).each(function() {
1519
- textwidth = Math.max(textwidth, this.getBBox().width);
1520
- }).remove();
1521
- }
1522
- return textwidth + 4;
1523
- }
1524
- async function make_legend(arg, obj) {
1525
- if (!arg.legendimg) return;
1526
- const img_div = obj.holder.append("div").style("margin-top", "5px");
1527
- obj.legendimg = arg.legendimg;
1528
- obj.legend = {
1529
- holder: img_div,
1530
- legendcolor: "#7D6836"
1531
- };
1532
- let shown = !arg.foldlegend;
1533
- img_div.append("div").text("LEGEND").attr("class", "sja_clb").style("display", "inline-block").style("font-size", ".7em").style("color", obj.legend.legendcolor).style("font-family", font).on("click", () => {
1534
- if (shown) {
1535
- shown = false;
1536
- disappear(div2);
1537
- } else {
1538
- shown = true;
1539
- appear(div2);
1540
- }
1541
- });
1542
- const div2 = obj.holder.append("div").style("border-top", "solid 1px " + obj.legend.legendcolor).style("background-color", "#FCFBF7");
1543
- obj.legend.holder = div2.append("table").style("border-spacing", "15px").style("border-collapse", "separate");
1544
- const [tr, td] = legend_newrow(obj, obj.legendimg.name || "");
1545
- const data = await dofetch2("img?file=" + obj.legendimg.file);
1546
- if (data.error) {
1547
- td.text(data.error);
1548
- return;
1549
- }
1550
- let fold = true;
1551
- const img = td.append("img").attr("class", "sja_clbb").attr("src", data.src).style("height", "80px");
1552
- img.on("click", () => {
1553
- if (fold) {
1554
- fold = false;
1555
- img.transition().style("height", obj.legendimg.height ? obj.legendimg.height + "px" : "auto");
1556
- } else {
1557
- fold = true;
1558
- img.transition().style("height", "80px");
1559
- }
1560
- });
1561
- }
1562
- export {
1563
- init
1564
- };
1565
- //# sourceMappingURL=singlecell-IPTSIKNA.js.map