@sjcrh/proteinpaint-client 2.203.0 → 2.203.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-6CEBP4SA.js +1366 -0
- package/dist/AIProjectAdmin-2CKKFC3A.js +951 -0
- package/dist/AggregateMatrix-5TBUMFE5.js +665 -0
- package/dist/AppHeader-5YBPWF44.js +829 -0
- package/dist/BoxPlot-UOJS5SJV.js +1210 -0
- package/dist/CorrelationVolcano-KX6JPZMT.js +613 -0
- package/dist/Cuminc-TLOOLZWR.js +1208 -0
- package/dist/DE-HUQLQ2Z3.js +87 -0
- package/dist/DEinput-WWUISAF2.js +404 -0
- package/dist/DifferentialAnalysis-6DTAGCEY.js +237 -0
- package/dist/Disco-P6ZLPYLF.js +3388 -0
- package/dist/Disco.UI-WGTMAFK2.js +242 -0
- package/dist/DmrPlot-3FRU5KUK.js +636 -0
- package/dist/GB-NWOBARL3.js +1390 -0
- package/dist/GSEA-DEEUAAMI.js +850 -0
- package/dist/GeneExpInput-6QWGEAFV.js +361 -0
- package/dist/Geomap-6HT2B7RH.js +83 -0
- package/dist/HicApp-PCNOUULF.js +2244 -0
- package/dist/IDCViewer-H3QPXVM3.js +10811 -0
- package/dist/NumBinaryEditor-IU6OLMKN.js +278 -0
- package/dist/NumBinaryEditor.unit.spec-YUPUILIV.js +311 -0
- package/dist/NumContEditor-KFDA76QN.js +104 -0
- package/dist/NumContEditor.unit.spec-QBOT5QHU.js +163 -0
- package/dist/NumCustomBinEditor-EOSTEXLB.js +32 -0
- package/dist/NumCustomBinEditor.unit.spec-B46XWFYH.js +396 -0
- package/dist/NumDiscreteEditor-Y4EAADXC.js +169 -0
- package/dist/NumDiscreteEditor.unit.spec-SJGHLWSM.js +232 -0
- package/dist/NumRegularBinEditor-3BNG7DIN.js +32 -0
- package/dist/NumRegularBinEditor.unit.spec-KM45QXXG.js +277 -0
- package/dist/NumSplineEditor-K4KPDC4S.js +209 -0
- package/dist/NumSplineEditor.unit.spec-TKQP5XTS.js +223 -0
- package/dist/NumericDensity-Z6JFVN3D.js +32 -0
- package/dist/NumericDensity.unit.spec-YEYBVLEP.js +417 -0
- package/dist/NumericHandler-ITT6HMPN.js +33 -0
- package/dist/NumericHandler.unit.spec-QVONMXY4.js +213 -0
- package/dist/ProteomeInput-PRS3DEMZ.js +387 -0
- package/dist/Regression-LJJJBBT6.js +1413 -0
- package/dist/Regression-LJJJBBT6.js.map +7 -0
- package/dist/RunChart2-AMM2JFF5.js +749 -0
- package/dist/SC-F7IE66VZ.js +1106 -0
- package/dist/Violin-RJ6OJZ4F.js +1073 -0
- package/dist/Volcano-BJA5HN5Y.js +1414 -0
- package/dist/WSIViewer-RJZGRUIR.js +26194 -0
- package/dist/Wsi-DXP6KOQA.js +232 -0
- package/dist/WsiSamplesPlot-2IAWV2B6.js +159 -0
- package/dist/adSandbox-RGWOIV3W.js +32 -0
- package/dist/animatedBubbleChart-J4Q2NAEW.js +546 -0
- package/dist/app-3QXNR4VG.js +31 -0
- package/dist/app-B4B7YNP3.js +41 -0
- package/dist/app.js +12 -12
- package/dist/bam-LRUMN45P.js +875 -0
- package/dist/barchart-L2G6GEHK.js +41 -0
- package/dist/barchart2-DWNVAZAJ.js +308 -0
- package/dist/block-TVEVAXNP.js +6248 -0
- package/dist/block.init-YOHAKPRI.js +32 -0
- package/dist/block.mds.expressionrank-PU6JH4W5.js +353 -0
- package/dist/block.mds.geneboxplot-WYYFDNE3.js +822 -0
- package/dist/block.mds.junction-4WCTL7Y4.js +1538 -0
- package/dist/block.mds.svcnv-MR3VCYUW.js +6795 -0
- package/dist/block.svg-LR3Y4ZO7.js +158 -0
- package/dist/block.tk.aicheck-A5AWKJZI.js +277 -0
- package/dist/block.tk.ase-AQBBAQEH.js +359 -0
- package/dist/block.tk.bam-QBTA2O3V.js +1900 -0
- package/dist/block.tk.bedgraphdot-4ALZG2MY.js +378 -0
- package/dist/block.tk.bigwig.ui-32W6XW37.js +205 -0
- package/dist/block.tk.hicstraw-PKBHBAG2.js +817 -0
- package/dist/block.tk.junction-AO5CXUCU.js +2357 -0
- package/dist/block.tk.junction.textmatrixui-RORVUIPI.js +193 -0
- package/dist/block.tk.ld-TNBSR4FT.js +93 -0
- package/dist/block.tk.menu-QDJO54J5.js +1023 -0
- package/dist/block.tk.pgv-6222WWYR.js +937 -0
- package/dist/brainImaging-2TPE7MXB.js +426 -0
- package/dist/brainImaging-2TPE7MXB.js.map +7 -0
- package/dist/brainRegions-KTFH6DE2.js +215 -0
- package/dist/bubbleHeatmap-LNXZLFY6.js +377 -0
- package/dist/cellTypeBubbleHeatmap-SRHUNX3S.js +277 -0
- package/dist/chunk-3TXVDBGN.js +626 -0
- package/dist/chunk-4HLHKBHP.js +274 -0
- package/dist/chunk-5GG7Q2ZG.js +397 -0
- package/dist/chunk-5HVAVJKW.js +518 -0
- package/dist/chunk-5HVAVJKW.js.map +7 -0
- package/dist/chunk-5PMFCQKC.js +98 -0
- package/dist/chunk-67URJYN7.js +84 -0
- package/dist/chunk-67URJYN7.js.map +7 -0
- package/dist/chunk-6AKSOLBX.js +5071 -0
- package/dist/chunk-6AKSOLBX.js.map +7 -0
- package/dist/chunk-6X7PP7A4.js +2126 -0
- package/dist/chunk-A3EDLRUN.js +54 -0
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- package/dist/chunk-EO6M3LY3.js +339 -0
- package/dist/chunk-EO6M3LY3.js.map +7 -0
- package/dist/chunk-F4PMOAQK.js +494 -0
- package/dist/chunk-FISQTHD4.js +2327 -0
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- package/dist/chunk-FXT2XM4E.js.map +7 -0
- package/dist/chunk-HIWTGMTE.js +1721 -0
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- package/dist/chunk-KLWSW6CC.js +203 -0
- package/dist/chunk-KNNSOOTG.js +194 -0
- package/dist/chunk-KTPXQH2N.js +170 -0
- package/dist/chunk-LGKXSWY4.js +276 -0
- package/dist/chunk-LP2GIXVK.js +4274 -0
- package/dist/chunk-M2ZZL5EV.js +2669 -0
- package/dist/chunk-M2ZZL5EV.js.map +7 -0
- package/dist/chunk-MBHERRJR.js +302 -0
- package/dist/chunk-MLYQDJUQ.js +480 -0
- package/dist/chunk-NBGDLLMX.js +446 -0
- package/dist/chunk-OPMMU6DQ.js +183 -0
- package/dist/chunk-OPMMU6DQ.js.map +7 -0
- package/dist/chunk-P3JEXVBT.js +50 -0
- package/dist/chunk-PZPPJY4K.js +34 -0
- package/dist/chunk-Q6JF4ZLT.js +141 -0
- package/dist/chunk-QF5IH7PC.js +263 -0
- package/dist/chunk-QJ6SO7CF.js +465 -0
- package/dist/chunk-QQUOVIOM.js +2899 -0
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- package/dist/chunk-SNCZRDS5.js +557 -0
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- package/dist/chunk-SPDNUC76.js +70 -0
- package/dist/chunk-T3663ZQL.js +37 -0
- package/dist/chunk-TSK4ZTFK.js +340 -0
- package/dist/chunk-USW6WRDZ.js +217 -0
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- package/dist/chunk-XE6E526E.js +129 -0
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- package/dist/chunk-YCECQV3T.js +160 -0
- package/dist/chunk-YROOKO3Q.js +1954 -0
- package/dist/chunk-YROOKO3Q.js.map +7 -0
- package/dist/chunk-Z4NADGZX.js +243 -0
- package/dist/chunk-Z53KOPRJ.js +102 -0
- package/dist/cohort-U7M6Q2UX.js +69 -0
- package/dist/condition-EGAV2PMJ.js +326 -0
- package/dist/controls-PTMYWUZV.js +33 -0
- package/dist/controls.config-DOA6PTP2.js +33 -0
- package/dist/correlation-Y3EL6GB7.js +94 -0
- package/dist/customdata.inputui-4NDDG6FL.js +283 -0
- package/dist/dataDownload-EQGUAOK2.js +328 -0
- package/dist/databrowser.ui-ABGOJUWQ.js +424 -0
- package/dist/dictionary-YOLLEDE5.js +112 -0
- package/dist/dnaMethylation-JZT63UHO.js +32 -0
- package/dist/dnaMethylation.integration.spec-EATCABJW.js +197 -0
- package/dist/dofetch-YNBIUFV5.js +48 -0
- package/dist/e2pca-RD6COCRL.js +343 -0
- package/dist/ep-BAI7WUET.js +1248 -0
- package/dist/expclust.gdc.spec-LKV2CQA5.js +301 -0
- package/dist/facet-X3SXQIAC.js +518 -0
- package/dist/gb-K324K7XB.js +80 -0
- package/dist/geneExpClustering-BJD5U3KG.js +243 -0
- package/dist/geneExpression-2TK3XLZ5.js +310 -0
- package/dist/geneExpression-F6NRTHZ4.js +32 -0
- package/dist/geneExpression.unit.spec-IFZN3J6A.js +96 -0
- package/dist/geneORA-DUEP735U.js +272 -0
- package/dist/geneRanking-LURDNT7L.js +547 -0
- package/dist/geneVariant-EAVCWQAZ.js +35 -0
- package/dist/geneVariant-IZTFYAG6.js +284 -0
- package/dist/geneVariant-IZTFYAG6.js.map +7 -0
- package/dist/geneVariant.integration.spec-LHL4ERFO.js +192 -0
- package/dist/genefusion.ui-4T5R7DT7.js +302 -0
- package/dist/geneset-3PWXPBG2.js +202 -0
- package/dist/genomeBrowser.spec-5SEN7R2P.js +275 -0
- package/dist/grin2-EXBG7TMS.js +1136 -0
- package/dist/grin2-XIXVFVWO.js +69 -0
- package/dist/hierCluster-5XQIWXAY.js +57 -0
- package/dist/hierCluster-I4TAQWPF.js +53 -0
- package/dist/hierCluster.config-T7HVAWES.js +34 -0
- package/dist/hierCluster.integration.spec-XWX43K4D.js +482 -0
- package/dist/hierCluster.interactivity-MYIDHFSL.js +48 -0
- package/dist/hierCluster.renderers-YRXA5ZUK.js +19 -0
- package/dist/imagePlot-4JQB6JUG.js +155 -0
- package/dist/importPlot-D3MXCCLN.js +8 -0
- package/dist/isoformExpression-WNGGUVIZ.js +34 -0
- package/dist/isoformExpression.unit.spec-NVJ5TIKM.js +236 -0
- package/dist/junction-O7N57JE3.js +35 -0
- package/dist/junction.unit.spec-Z63DRTRR.js +181 -0
- package/dist/launch.adhoc-MBDRXD3B.js +36 -0
- package/dist/leftlabel.sample-IG6FOQ26.js +257 -0
- package/dist/lollipop-ZUYBLPGN.js +165 -0
- package/dist/maf-QOS5LURG.js +454 -0
- package/dist/maftimeline-FEHP2J55.js +586 -0
- package/dist/matrix-BG4J4RXA.js +57 -0
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- package/dist/matrix.cells-PTIDQVCI.js +26 -0
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- package/dist/matrix.data-FMIQRXOA.js +23 -0
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- package/dist/multivalue-OZALSBFW.js +82 -0
- package/dist/numericDictTermCluster-7PGJ7KV4.js +63 -0
- package/dist/oncomatrix-Q2EQZPLS.js +289 -0
- package/dist/oncomatrix.spec-YEQOQRPW.js +442 -0
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- package/dist/plot.app-AEUR6XGI.js +35 -0
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- package/dist/plot.disco-LUFC5GGC.js +99 -0
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- package/dist/polar2-AB6SVYRS.js +231 -0
- package/dist/profileForms-AIEHZ4GC.js +933 -0
- package/dist/profilePlot-PZDFGXKZ.js +48 -0
- package/dist/proteinView-7GWHQYXC.js +1561 -0
- package/dist/proteomeCohortCompare-BTN4HHFL.js +779 -0
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- package/dist/singleCellCellType-EZYESBVZ.js +32 -0
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- /package/dist/{summary.integration.spec-52WP6SNY.js.map → summary.integration.spec-JJDE6SRV.js.map} +0 -0
- /package/dist/{summaryInput-WUJNHCGH.js.map → summaryInput-JG4AW6FW.js.map} +0 -0
- /package/dist/{sunburst-IJ3ZG2BC.js.map → sunburst-YKB42RZX.js.map} +0 -0
- /package/dist/{survival-SQRYWGWZ.js.map → survival-3IFFTDQA.js.map} +0 -0
- /package/dist/{survival-F2B5JKOO.js.map → survival-HOFNJENX.js.map} +0 -0
- /package/dist/{svgraph-HVCMF6KI.js.map → svgraph-WFEY4ZIZ.js.map} +0 -0
- /package/dist/{svmr-PROHTMTP.js.map → svmr-44EIX7YD.js.map} +0 -0
- /package/dist/{table-3E64OJNV.js.map → table-6MKVJUNC.js.map} +0 -0
- /package/dist/{termCollection-WKT6ESMI.js.map → termCollection-6JBVQL6Y.js.map} +0 -0
- /package/dist/{summary-U3YKEMZC.js.map → termCollection-TTELZVC5.js.map} +0 -0
- /package/dist/{termCollection.unit.spec-XMOCMVER.js.map → termCollection.unit.spec-6Z7X646L.js.map} +0 -0
- /package/dist/{termCollection-MUH7P6B5.js.map → termCollectionFractionSelection-5DVIJBM5.js.map} +0 -0
- /package/dist/{termCollectionFractionSelection.unit.spec-MG7E3EIZ.js.map → termCollectionFractionSelection.unit.spec-3HIM5BIF.js.map} +0 -0
- /package/dist/{termCollectionFractionSelection-P5G6WIJJ.js.map → tk-HSYWJCGQ.js.map} +0 -0
- /package/dist/{tk-HWUPUGOS.js.map → tk-PNOVG2XS.js.map} +0 -0
- /package/dist/{tp.ui-RRB5MJRD.js.map → tp.ui-COBBSUPB.js.map} +0 -0
- /package/dist/{tk-SBM2GN3S.js.map → tvs.dt-35AKURFI.js.map} +0 -0
- /package/dist/{tvs.dtcnv.categorical-7RJPQKMX.js.map → tvs.dtcnv.categorical-3EHXYROL.js.map} +0 -0
- /package/dist/{tvs.dtcnv.continuous-FW4ZXIYY.js.map → tvs.dtcnv.continuous-AXQ2GU6S.js.map} +0 -0
- /package/dist/{tvs.dtfusion-3GDWW3ML.js.map → tvs.dtfusion-PLJIMPNX.js.map} +0 -0
- /package/dist/{tvs.dtitd-FER4H4UO.js.map → tvs.dtitd-JS6RFBV5.js.map} +0 -0
- /package/dist/{tvs.dtsnvindel-ISEOJ5UA.js.map → tvs.dtsnvindel-MDEM5MPT.js.map} +0 -0
- /package/dist/{tvs.dtsv-JDML7EWE.js.map → tvs.dtsv-OU756YLO.js.map} +0 -0
- /package/dist/{tvs.samplelst-MJTM6GSV.js.map → tvs.samplelst-5NDICES4.js.map} +0 -0
- /package/dist/{tvs.termCollection-GMOXBJWF.js.map → tvs.termCollection-5URPDPH6.js.map} +0 -0
- /package/dist/{tvs.dt-I2ECKHQ2.js.map → vocabulary-CHCVMPK5.js.map} +0 -0
- /package/dist/{wsi.direct-IVPACPNT.js.map → wsi.direct-JSKV4H4X.js.map} +0 -0
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import {
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buildAnnotationsCsv
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} from "./chunk-XJGPL2JZ.js";
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import {
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PlotBase,
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filterInit,
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getNormalRoot,
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renderTable,
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sayerror
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import "./chunk-HJ6L54YS.js";
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require_debounce
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import {
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clearServerDataCache,
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dofetch2,
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dofetch3
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} from "./chunk-6X7PP7A4.js";
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import "./chunk-EO6M3LY3.js";
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import "./chunk-DXLO4OAB.js";
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import {
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getColors
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} from "./chunk-4QBRVM4V.js";
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import {
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copyMerge,
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getCompInit
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import "./chunk-PF4DSFDR.js";
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import "./chunk-OZVWP4ZR.js";
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import "./chunk-TLT4YIG3.js";
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import "./chunk-5R63Q5KH.js";
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import "./chunk-I6Y4O3RR.js";
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import {
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rgb
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} from "./chunk-Q5RDQNIT.js";
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import "./chunk-DQC5FFGV.js";
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import {
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__toESM
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} from "./chunk-HFNDKYVF.js";
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// plots/aiProjectAdmin/defaults.ts
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function getDefaultAIProjectAdminSettings(overrides = {}) {
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const defaults = {};
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return Object.assign(defaults, overrides);
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}
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// plots/aiProjectAdmin/repo/ProjectReposity.ts
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var ProjectReposity = class {
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async getAuthorization(genome, dslabel, actions) {
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const body = {
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genome,
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dslabel,
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for: "auth",
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auth: actions
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};
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try {
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const response = await dofetch2("aiProjectAdmin", { body });
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return response || {};
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} catch (error) {
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console.error("Error fetching authorizations:", error);
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throw error;
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}
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}
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async getProjects(genome, dslabel) {
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const body = {
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genome,
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dslabel,
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for: "list"
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};
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try {
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const response = await dofetch3("aiProjectAdmin", { body });
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return response || [];
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} catch (error) {
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console.error("Error fetching projects:", error);
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throw error;
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}
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}
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/** Gets the image paths from db */
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async getImagePaths(genome, dslabel, project) {
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genome,
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dslabel,
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for: "images",
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project
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};
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try {
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return await dofetch3("aiProjectAdmin", { body });
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} catch (error) {
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console.error("Error fetching images:", error);
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throw error;
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}
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}
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async updateProject(_body, method) {
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const body = Object.assign({}, _body, { for: "admin" });
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try {
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if (method == "PUT" || method == "DELETE") {
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return await dofetch2("aiProjectAdmin", { method, body }, {});
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}
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return await dofetch3("aiProjectAdmin", { method, body });
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} catch (error) {
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console.error("Error fetching projects:", error);
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throw error;
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}
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}
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//TODO: Will need a method to call metadata API, then build dictionary
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async getTerms(app) {
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const root = { id: "__root", name: "root", __tree_isroot: true };
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try {
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await app.vocabApi.buildAdHocDictionary();
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const terms = await app.vocabApi.getTermChildren(root, []);
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return terms || [];
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} catch (error) {
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console.error("Error getting terms:", error);
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throw error;
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}
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}
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async getAnnotations(genome, dslabel, projectId) {
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try {
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const body = {
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genome,
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dslabel,
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projectId,
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wsimagesFilenames: ["all"]
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};
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const response = await dofetch3("aiProjectSelectedWSImages", { body });
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const wsimages = response?.wsimages || [];
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const annotations = [];
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for (const w of wsimages) {
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const anns = w.annotations || [];
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const filename = w.filename;
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if (Array.isArray(anns)) {
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for (const a of anns) {
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annotations.push(Object.assign({ filename }, a));
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}
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}
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}
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return annotations;
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} catch (error) {
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console.error("Error fetching annotations from server:", error);
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throw error;
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}
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}
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};
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// plots/aiProjectAdmin/view/ProjectAdminRender.ts
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var import_debounce = __toESM(require_debounce(), 1);
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var ProjectAdminRender = class {
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constructor(dom, projects, interactions, wsiApp) {
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this.dom = dom;
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this.projects = projects;
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this.interactions = interactions;
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this.wsiApp = wsiApp;
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}
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/** Renders project administration UI, allowing users to
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* create new projects or edit existing ones.*/
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renderProjectAdmin() {
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const projectDiv = this.dom.holder.append("div").attr("id", "sjpp-ai-prjt-admin-projects").attr("class", "sjpp-deletable-ai-prjt-admin-div");
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this.interactions.getAuthorization(["addProject"]).then((isAuthorized) => {
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if (isAuthorized.addProject) {
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this.renderCreateProject(projectDiv);
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}
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}).catch((e) => {
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console.error("Error checking authorization:", e.message || e);
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sayerror(this.dom.errorDiv, "Error checking user authorization. Please try again later.");
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}).finally(() => {
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this.renderProjectSelection(projectDiv);
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});
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}
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/** Users submit a new project name before sample
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* filtering UI to finalize project creation.*/
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renderCreateProject(projectDiv) {
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const newProjectDiv = projectDiv.append("div").attr("class", "sjpp-project-select-new").style("padding", "10px");
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const input = newProjectDiv.append("input").attr("id", "sjpp-new-project-name").attr("display", "inline-block").attr("placeholder", "New project name");
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const button = newProjectDiv.append("div").text("Create Project").classed("sja_menuoption", true).style("display", "inline-block").property("disabled", true).on("click", async () => {
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const projectName = input.property("value");
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const prjtNameLen = projectName.trim().length;
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const showError = (msg) => {
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sayerror(this.dom.errorDiv, msg);
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input.property("value", "");
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button.property("disabled", true);
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setTimeout(() => {
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this.dom.errorDiv.selectAll("*").remove();
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}, 3e3);
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};
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if (!(await this.interactions.getAuthorization(["addProject"])).addProject) {
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return showError("Only users with admin role can create projects");
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}
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if (prjtNameLen == 0) {
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return showError("Project name cannot be empty");
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}
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if (prjtNameLen > 50 || prjtNameLen < 3) {
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return showError("Project name must be between 3 and 50 characters");
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}
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const notUnique = this.projects.some((p) => p.name === projectName.trim());
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if (notUnique) {
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return showError(`Project name '${projectName}' already exists`);
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}
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if (this.dom.header) this.dom.header.text(`Project: ${projectName}`);
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await this.interactions.appDispatchEdit({ project: { name: projectName, type: "new" } });
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});
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input.on("keydown", () => {
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const debouncer = () => {
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button.property("disabled", input.property("value").length == 0);
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};
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(0, import_debounce.debounce)(debouncer, 300)();
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});
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}
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+
/** Users may select an existing project from a table
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+
* returned for the db to edit or delete, depending
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* on user roles.*/
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renderProjectSelection(projectDiv) {
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if (!this.projects.length) {
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projectDiv.append("div").attr("class", "sjpp-project-select-table").style("padding", "10px").append("div").text("No projects found. Please create a new project or request one from your admin.");
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return;
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}
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const tableDiv = projectDiv.append("div").attr("class", "sjpp-project-select-table").style("padding", "10px");
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const columns = [{ label: "Project", sortable: true }];
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let rows = this.projects.map((p) => [{ value: p.name }]);
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const columnButtons = [
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{
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text: "Edit",
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class: "sja_menuoption",
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//_ = event, __ = idx
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callback: async (_, idx) => {
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const project = this.projects[idx];
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await this.interactions.appDispatchEdit({ project: { ...project, type: "edit" } });
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await this.interactions.launchViewer(this.dom.holder, []);
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}
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},
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240
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{
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// Export button - pass only project.id and export will be CSV
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text: "Export",
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+
class: "sja_menuoption",
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244
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callback: async (_, idx) => {
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245
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const project = this.projects[idx];
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246
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try {
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247
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await this.interactions.exportAnnotations(project.id);
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248
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} catch (_2) {
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249
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sayerror(this.dom.errorDiv, "Failed to export annotations");
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}
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}
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252
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}
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];
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254
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+
this.interactions.getAuthorization(["deleteProject", "logOut", "required"]).then((isAuthorized) => {
|
|
255
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+
if (isAuthorized.required) {
|
|
256
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+
columns.push({ label: "User", sortable: false });
|
|
257
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+
rows = this.projects.map((p) => [{ value: p.name }, { value: p.current_user ?? "Editable" }]);
|
|
258
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+
}
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259
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+
if (isAuthorized.deleteProject) {
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260
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+
columnButtons.push({
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261
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+
text: "Delete",
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262
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+
class: "sja_menuoption",
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263
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callback: async (_, i) => {
|
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264
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+
const project = this.projects[i];
|
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265
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+
this.interactions.deleteProject(project).then((success) => {
|
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266
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+
if (success) {
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267
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+
this.projects.splice(i, 1);
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268
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projectDiv.select(".sjpp-project-select-table").remove();
|
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269
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+
this.renderProjectSelection(projectDiv);
|
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270
|
+
}
|
|
271
|
+
});
|
|
272
|
+
}
|
|
273
|
+
});
|
|
274
|
+
}
|
|
275
|
+
if (isAuthorized.logOut) {
|
|
276
|
+
columnButtons.push({
|
|
277
|
+
text: "Force Checkout",
|
|
278
|
+
class: "sja_menuoption",
|
|
279
|
+
callback: async (_, i) => {
|
|
280
|
+
const project = this.projects[i];
|
|
281
|
+
await this.interactions.onLogOut(this.interactions.genome, this.interactions.dslabel, project.id);
|
|
282
|
+
}
|
|
283
|
+
});
|
|
284
|
+
}
|
|
285
|
+
}).catch((e) => {
|
|
286
|
+
console.error("Error checking authorization:", e.message || e);
|
|
287
|
+
sayerror(this.dom.errorDiv, "Error checking user authorization. Please try again later.");
|
|
288
|
+
}).finally(() => {
|
|
289
|
+
renderTable({
|
|
290
|
+
div: tableDiv,
|
|
291
|
+
rows,
|
|
292
|
+
header: {
|
|
293
|
+
allowSort: true
|
|
294
|
+
},
|
|
295
|
+
columns,
|
|
296
|
+
singleMode: true,
|
|
297
|
+
columnButtons
|
|
298
|
+
});
|
|
299
|
+
});
|
|
300
|
+
}
|
|
301
|
+
};
|
|
302
|
+
|
|
303
|
+
// plots/aiProjectAdmin/view/LogoutRenderer.ts
|
|
304
|
+
var LogoutRenderer = class {
|
|
305
|
+
constructor(interactions) {
|
|
306
|
+
this.interactions = interactions;
|
|
307
|
+
}
|
|
308
|
+
render(holder, genome, dslabel, projectId) {
|
|
309
|
+
holder.append("div").style("position", "absolute").style("top", "10px").attr("data-testid", "logout-button").style("right", "20px").style("z-index", "1000").append("button").attr("type", "submit").style("font-size", "1.25em").style("padding", "10px 25px").style("border-radius", "20px").style("border", "1px solid black").style("background-color", "white").style("cursor", "pointer").text("Check Out").on("click", async () => {
|
|
310
|
+
holder.selectAll("*").remove();
|
|
311
|
+
await this.interactions.onLogOut(genome, dslabel, projectId);
|
|
312
|
+
});
|
|
313
|
+
}
|
|
314
|
+
};
|
|
315
|
+
|
|
316
|
+
// plots/aiProjectAdmin/interactions/AIProjectAdminInteractions.ts
|
|
317
|
+
var AIProjectAdminInteractions = class {
|
|
318
|
+
constructor(app, id, prjtRepo) {
|
|
319
|
+
this.app = app;
|
|
320
|
+
this.id = id;
|
|
321
|
+
this.genome = app.vocabApi.vocab.genome;
|
|
322
|
+
this.dslabel = app.vocabApi.vocab.dslabel;
|
|
323
|
+
this.prjtRepo = prjtRepo;
|
|
324
|
+
}
|
|
325
|
+
async getAuthorization(actions) {
|
|
326
|
+
try {
|
|
327
|
+
return await this.prjtRepo.getAuthorization(this.genome, this.dslabel, actions);
|
|
328
|
+
} catch (e) {
|
|
329
|
+
console.error("Error checking authorization:", e.message || e);
|
|
330
|
+
throw e;
|
|
331
|
+
}
|
|
332
|
+
}
|
|
333
|
+
async addProject(opts) {
|
|
334
|
+
const config = this.getConfig();
|
|
335
|
+
const settings = config.settings || {};
|
|
336
|
+
const projectObject = Object.assign({}, settings.project, opts.project);
|
|
337
|
+
const body = {
|
|
338
|
+
genome: this.genome,
|
|
339
|
+
dslabel: this.dslabel,
|
|
340
|
+
project: projectObject
|
|
341
|
+
};
|
|
342
|
+
try {
|
|
343
|
+
await this.prjtRepo.updateProject(body, "PUT");
|
|
344
|
+
} catch (e) {
|
|
345
|
+
console.error("Error adding project:", e.message || e);
|
|
346
|
+
throw e;
|
|
347
|
+
}
|
|
348
|
+
}
|
|
349
|
+
async editProject(opts) {
|
|
350
|
+
const config = this.getConfig();
|
|
351
|
+
const settings = config.settings || {};
|
|
352
|
+
const project = Object.assign(
|
|
353
|
+
{},
|
|
354
|
+
settings.project,
|
|
355
|
+
{
|
|
356
|
+
type: "edit"
|
|
357
|
+
},
|
|
358
|
+
opts.project
|
|
359
|
+
);
|
|
360
|
+
const body = {
|
|
361
|
+
genome: this.genome,
|
|
362
|
+
dslabel: this.dslabel,
|
|
363
|
+
project
|
|
364
|
+
};
|
|
365
|
+
try {
|
|
366
|
+
const res = await this.prjtRepo.updateProject(body, "POST");
|
|
367
|
+
if (!project.id) project.id = res.projectId;
|
|
368
|
+
} catch (e) {
|
|
369
|
+
console.error("Error editing project:", e.message || e);
|
|
370
|
+
throw e;
|
|
371
|
+
}
|
|
372
|
+
await this.appDispatchEdit({ project }, config);
|
|
373
|
+
}
|
|
374
|
+
async deleteProject(project) {
|
|
375
|
+
let success = false;
|
|
376
|
+
const body = {
|
|
377
|
+
genome: this.genome,
|
|
378
|
+
dslabel: this.dslabel,
|
|
379
|
+
project: {
|
|
380
|
+
name: project.value,
|
|
381
|
+
id: project.id
|
|
382
|
+
}
|
|
383
|
+
};
|
|
384
|
+
try {
|
|
385
|
+
const response = await this.prjtRepo.updateProject(body, "DELETE");
|
|
386
|
+
if (response && response.status === "ok") {
|
|
387
|
+
success = true;
|
|
388
|
+
}
|
|
389
|
+
} catch (e) {
|
|
390
|
+
console.error("Error deleting project:", e.message || e);
|
|
391
|
+
throw e;
|
|
392
|
+
}
|
|
393
|
+
return success;
|
|
394
|
+
}
|
|
395
|
+
async getFilteredImages(filter) {
|
|
396
|
+
const config = this.getConfig();
|
|
397
|
+
const settings = config.settings || {};
|
|
398
|
+
return await this.app.vocabApi.getFilteredAiImages(settings.project, filter);
|
|
399
|
+
}
|
|
400
|
+
async launchViewer(holder, _images) {
|
|
401
|
+
const config = this.getConfig();
|
|
402
|
+
const settings = config.settings;
|
|
403
|
+
if (!settings.project || !settings.project.id) throw new Error("Project is required to launch viewer");
|
|
404
|
+
let images = [];
|
|
405
|
+
if (_images && _images.length > 0) {
|
|
406
|
+
images = _images;
|
|
407
|
+
} else {
|
|
408
|
+
const response = await this.prjtRepo.getImagePaths(
|
|
409
|
+
this.genome,
|
|
410
|
+
this.dslabel,
|
|
411
|
+
settings.project
|
|
412
|
+
);
|
|
413
|
+
if (response.status !== "ok") {
|
|
414
|
+
await this.appDispatchEdit({ project: { name: "", type: "logout" } }, config);
|
|
415
|
+
sayerror(holder, response.error || "Error fetching images");
|
|
416
|
+
return;
|
|
417
|
+
}
|
|
418
|
+
holder.selectAll(".sjpp-deletable-ai-prjt-admin-div").remove();
|
|
419
|
+
images = response.images;
|
|
420
|
+
}
|
|
421
|
+
const wsiViewer = await import("./plot.wsi-CNQCNZ4Z.js");
|
|
422
|
+
const genome = this.genome;
|
|
423
|
+
const dslabel = this.dslabel;
|
|
424
|
+
const logoutRenderer = new LogoutRenderer(this);
|
|
425
|
+
logoutRenderer.render(holder, genome, dslabel, settings.project.id);
|
|
426
|
+
wsiViewer.default(this.dslabel, holder, { name: this.genome }, null, settings.project.id, images, true);
|
|
427
|
+
}
|
|
428
|
+
async appDispatchEdit(settings, config = {}) {
|
|
429
|
+
if (!config?.settings) {
|
|
430
|
+
config = this.getConfig();
|
|
431
|
+
if (!config) throw new Error(`No plot with id='${this.id}' found.`);
|
|
432
|
+
}
|
|
433
|
+
const configSettings = config.settings;
|
|
434
|
+
const mergedSettings = {
|
|
435
|
+
project: { name: "", type: "logout", ...configSettings?.project, ...settings.project }
|
|
436
|
+
};
|
|
437
|
+
await this.app.dispatch({
|
|
438
|
+
type: "plot_edit",
|
|
439
|
+
id: this.id,
|
|
440
|
+
config: { settings: mergedSettings }
|
|
441
|
+
});
|
|
442
|
+
}
|
|
443
|
+
getConfig() {
|
|
444
|
+
return this.app.getState().plots.find((p) => p.id === this.id);
|
|
445
|
+
}
|
|
446
|
+
async exportAnnotations(projectId) {
|
|
447
|
+
const config = this.getConfig();
|
|
448
|
+
if (!config || !config.settings) throw new Error(`No plot with id='${this.id}' found.`);
|
|
449
|
+
const settings = config.settings || {};
|
|
450
|
+
let annotations = [];
|
|
451
|
+
try {
|
|
452
|
+
annotations = await this.prjtRepo.getAnnotations(this.genome, this.dslabel, projectId);
|
|
453
|
+
} catch (e) {
|
|
454
|
+
console.error("Error fetching annotations for export:", e?.message || e);
|
|
455
|
+
throw e;
|
|
456
|
+
}
|
|
457
|
+
const mime = "text/csv;charset=utf-8;";
|
|
458
|
+
let content;
|
|
459
|
+
if (!Array.isArray(annotations) || annotations.length === 0) {
|
|
460
|
+
content = "";
|
|
461
|
+
} else {
|
|
462
|
+
content = buildAnnotationsCsv(annotations);
|
|
463
|
+
}
|
|
464
|
+
const rawName = settings.project && settings.project.name ? String(settings.project.name) : `project-${projectId}`;
|
|
465
|
+
const safeName = rawName.replace(/[^a-z0-9_.-]/gi, "_").slice(0, 200);
|
|
466
|
+
const filename = `${safeName}-annotations.csv`;
|
|
467
|
+
try {
|
|
468
|
+
const blob = new Blob([content], { type: mime });
|
|
469
|
+
const url = URL.createObjectURL(blob);
|
|
470
|
+
const a = document.createElement("a");
|
|
471
|
+
a.href = url;
|
|
472
|
+
a.download = filename;
|
|
473
|
+
document.body.appendChild(a);
|
|
474
|
+
a.click();
|
|
475
|
+
a.remove();
|
|
476
|
+
setTimeout(() => URL.revokeObjectURL(url), 1e3);
|
|
477
|
+
} catch (e) {
|
|
478
|
+
console.error("Error creating annotation download:", e?.message || e);
|
|
479
|
+
throw e;
|
|
480
|
+
}
|
|
481
|
+
}
|
|
482
|
+
async onLogOut(genome, dslabel, projectId) {
|
|
483
|
+
try {
|
|
484
|
+
await dofetch3("aiProjectAdmin", {
|
|
485
|
+
body: {
|
|
486
|
+
genome,
|
|
487
|
+
dslabel,
|
|
488
|
+
for: "logout",
|
|
489
|
+
project: { id: projectId }
|
|
490
|
+
}
|
|
491
|
+
});
|
|
492
|
+
clearServerDataCache();
|
|
493
|
+
await this.appDispatchEdit({ project: { name: "", id: projectId, type: "logout" } });
|
|
494
|
+
} catch (e) {
|
|
495
|
+
console.error("Error logging out: " + (e.message || e));
|
|
496
|
+
throw e;
|
|
497
|
+
}
|
|
498
|
+
}
|
|
499
|
+
};
|
|
500
|
+
|
|
501
|
+
// plots/aiProjectAdmin/view/ClassesTableRender.ts
|
|
502
|
+
var ClassesTableRender = class {
|
|
503
|
+
constructor(holder, rows) {
|
|
504
|
+
this.dom = {
|
|
505
|
+
holder,
|
|
506
|
+
tableDiv: holder.append("div"),
|
|
507
|
+
btnDiv: holder.append("div")
|
|
508
|
+
};
|
|
509
|
+
this.columns = [
|
|
510
|
+
{ label: "" },
|
|
511
|
+
// Empty for the delete icon
|
|
512
|
+
{
|
|
513
|
+
label: "NAME",
|
|
514
|
+
editCallback: (rowIdx, cell) => {
|
|
515
|
+
const newValue = cell.value.trim();
|
|
516
|
+
const foundSameName = this.rows.some((r, i) => newValue === r[1].value.trim() && i !== rowIdx);
|
|
517
|
+
if (foundSameName) {
|
|
518
|
+
alert(`Class name '${newValue}' already exists`);
|
|
519
|
+
cell.value = this.rowsCopy[rowIdx][1].value;
|
|
520
|
+
cell.__td.text(this.rowsCopy[rowIdx][1].value);
|
|
521
|
+
return;
|
|
522
|
+
}
|
|
523
|
+
this.rowsCopy = this.rows.map((r) => r.map((c) => ({ ...c })));
|
|
524
|
+
}
|
|
525
|
+
},
|
|
526
|
+
{ label: "COLOR" }
|
|
527
|
+
];
|
|
528
|
+
const colorScale = getColors(5);
|
|
529
|
+
this.rows = rows || this.setDefaultClasses(colorScale);
|
|
530
|
+
this.rowsCopy = [];
|
|
531
|
+
this.renderTable();
|
|
532
|
+
this.renderAddClassBtn(colorScale);
|
|
533
|
+
}
|
|
534
|
+
renderTable() {
|
|
535
|
+
this.dom.tableDiv.select("table").remove();
|
|
536
|
+
if (!this.rows || this.rows.length === 0) return;
|
|
537
|
+
this.rowsCopy = this.rows.map((r) => r.map((c) => ({ ...c })));
|
|
538
|
+
renderTable({
|
|
539
|
+
div: this.dom.tableDiv,
|
|
540
|
+
columns: this.columns,
|
|
541
|
+
rows: this.rows,
|
|
542
|
+
striped: false,
|
|
543
|
+
showLines: false,
|
|
544
|
+
singleMode: false,
|
|
545
|
+
resize: true
|
|
546
|
+
});
|
|
547
|
+
for (const [i, row] of this.rows.entries()) {
|
|
548
|
+
const deleteBtn = row[0].__td.select(".sja_menuoption");
|
|
549
|
+
deleteBtn.on("click", () => {
|
|
550
|
+
this.rows.splice(i, 1);
|
|
551
|
+
this.renderTable();
|
|
552
|
+
});
|
|
553
|
+
}
|
|
554
|
+
}
|
|
555
|
+
setDefaultClasses(colorScale) {
|
|
556
|
+
const rows = [];
|
|
557
|
+
for (let i = 0; i < 4; i++) {
|
|
558
|
+
this.getNewClass(colorScale, rows);
|
|
559
|
+
}
|
|
560
|
+
return rows;
|
|
561
|
+
}
|
|
562
|
+
getNewClass(colorScale, rows) {
|
|
563
|
+
const getName = (i2) => `New class ${i2}`;
|
|
564
|
+
let i = 1;
|
|
565
|
+
let found = true;
|
|
566
|
+
while (found) {
|
|
567
|
+
const checkName = getName(i);
|
|
568
|
+
found = rows.some((r) => r[1].value == checkName);
|
|
569
|
+
if (found) i++;
|
|
570
|
+
}
|
|
571
|
+
rows.push([
|
|
572
|
+
{ html: `<div class="sja_menuoption">×<div>` },
|
|
573
|
+
{ value: getName(i) },
|
|
574
|
+
{ color: rgb(colorScale(`${i}`)).formatHex() }
|
|
575
|
+
]);
|
|
576
|
+
}
|
|
577
|
+
renderAddClassBtn(colorScale) {
|
|
578
|
+
this.dom.btnDiv.append("div").text("Add Class").classed("sja_menuoption", true).style("display", "inline-block").style("margin", "10px 0px 0px 0px").on("click", () => {
|
|
579
|
+
if (this.rows.length >= 9) {
|
|
580
|
+
alert("Maximum number of classes reached.");
|
|
581
|
+
return;
|
|
582
|
+
}
|
|
583
|
+
this.getNewClass(colorScale, this.rows);
|
|
584
|
+
this.renderTable();
|
|
585
|
+
});
|
|
586
|
+
}
|
|
587
|
+
};
|
|
588
|
+
|
|
589
|
+
// plots/aiProjectAdmin/view/SelectorTableRender.ts
|
|
590
|
+
var SelectorTableRender = class {
|
|
591
|
+
constructor(holder, interactions, images) {
|
|
592
|
+
this.images = { rows: [], cols: [] };
|
|
593
|
+
this.selectedRows = /* @__PURE__ */ new Set();
|
|
594
|
+
this.sortedIndexMap = [];
|
|
595
|
+
this.fileColumn = 0;
|
|
596
|
+
this.dom = {
|
|
597
|
+
holder,
|
|
598
|
+
tableDiv: holder.append("div").attr("class", ".sjpp-deletable-ai-prjt-admin-div").attr("id", "sjpp-selector-table").style("padding", "10px 0"),
|
|
599
|
+
btnDiv: holder.append("div").attr("class", ".sjpp-deletable-ai-prjt-admin-div").attr("id", "sjpp-selector-btns")
|
|
600
|
+
};
|
|
601
|
+
this.images = images;
|
|
602
|
+
this.interactions = interactions;
|
|
603
|
+
const selectedList = images?.selectedImages;
|
|
604
|
+
const normalizeImageName = (s) => String(s ?? "").replace(/\.svs$/i, "").toLowerCase();
|
|
605
|
+
const selectedSet = new Set((selectedList || []).map(normalizeImageName));
|
|
606
|
+
this.fileColumn = 0;
|
|
607
|
+
this.selectedRows = /* @__PURE__ */ new Set();
|
|
608
|
+
(this.images?.rows ?? []).forEach((row, i) => {
|
|
609
|
+
const candidate = row?.[this.fileColumn]?.value;
|
|
610
|
+
const n = normalizeImageName(candidate);
|
|
611
|
+
if (selectedSet.has(n)) this.selectedRows.add(i);
|
|
612
|
+
});
|
|
613
|
+
this.render();
|
|
614
|
+
}
|
|
615
|
+
render() {
|
|
616
|
+
if (this.images === void 0) this.dom.tableDiv.append("div").text("No images found").style("color", "red");
|
|
617
|
+
const columns = this.images.cols.map((c) => ({ ...c, sortable: true })) || [];
|
|
618
|
+
if (!columns.length) {
|
|
619
|
+
this.dom.tableDiv.append("div").text("Missing columns data").style("color", "red");
|
|
620
|
+
this.renderApplyBtn(
|
|
621
|
+
/*disable=*/
|
|
622
|
+
true
|
|
623
|
+
);
|
|
624
|
+
return;
|
|
625
|
+
}
|
|
626
|
+
const rows = this.images?.rows ?? [];
|
|
627
|
+
const mapped = rows.map((row, origIdx) => ({
|
|
628
|
+
row,
|
|
629
|
+
origIdx,
|
|
630
|
+
selected: this.selectedRows.has(origIdx)
|
|
631
|
+
}));
|
|
632
|
+
mapped.sort((a, b) => {
|
|
633
|
+
const selDiff = Number(b.selected) - Number(a.selected);
|
|
634
|
+
return selDiff || a.origIdx - b.origIdx;
|
|
635
|
+
});
|
|
636
|
+
const rowsSorted = mapped.map((m) => m.row);
|
|
637
|
+
this.sortedIndexMap = mapped.map((m) => m.origIdx);
|
|
638
|
+
const selectedRowsForRender = mapped.reduce((acc, m, idx) => {
|
|
639
|
+
if (m.selected) acc.push(idx);
|
|
640
|
+
return acc;
|
|
641
|
+
}, []);
|
|
642
|
+
renderTable({
|
|
643
|
+
div: this.dom.tableDiv,
|
|
644
|
+
columns,
|
|
645
|
+
rows: rowsSorted,
|
|
646
|
+
selectedRows: selectedRowsForRender,
|
|
647
|
+
striped: true,
|
|
648
|
+
header: { allowSort: true },
|
|
649
|
+
noButtonCallback: (_, node) => {
|
|
650
|
+
const initialIdx = Number(node?.value);
|
|
651
|
+
const orig = this.sortedIndexMap?.[initialIdx];
|
|
652
|
+
if (orig === void 0) return;
|
|
653
|
+
if (node.checked) {
|
|
654
|
+
this.selectedRows.add(orig);
|
|
655
|
+
} else {
|
|
656
|
+
this.selectedRows.delete(orig);
|
|
657
|
+
}
|
|
658
|
+
}
|
|
659
|
+
});
|
|
660
|
+
this.renderApplyBtn(
|
|
661
|
+
/*disable=*/
|
|
662
|
+
false
|
|
663
|
+
);
|
|
664
|
+
}
|
|
665
|
+
renderApplyBtn(disable = false) {
|
|
666
|
+
const btn = this.dom.btnDiv.append("div").text("Apply").classed("sja_menuoption", true).style("display", "block").style("width", "fit-content").style("margin-left", "5vw");
|
|
667
|
+
if (disable) btn.attr("disabled", true);
|
|
668
|
+
btn.on("click", async () => {
|
|
669
|
+
if (!this.selectedRows.size) {
|
|
670
|
+
alert(`No rows selected. Please select some rows.`);
|
|
671
|
+
return;
|
|
672
|
+
}
|
|
673
|
+
btn.attr("disabled", true);
|
|
674
|
+
const images = Array.from(this.selectedRows).map((i) => `${this.images.rows[i][this.fileColumn].value}.svs`);
|
|
675
|
+
await this.interactions.editProject({
|
|
676
|
+
project: {
|
|
677
|
+
images,
|
|
678
|
+
type: "edit"
|
|
679
|
+
}
|
|
680
|
+
});
|
|
681
|
+
this.dom.holder.selectAll("*").remove();
|
|
682
|
+
await this.interactions.launchViewer(this.dom.holder, images);
|
|
683
|
+
});
|
|
684
|
+
}
|
|
685
|
+
};
|
|
686
|
+
|
|
687
|
+
// plots/aiProjectAdmin/view/UsersRender.ts
|
|
688
|
+
var UsersRender = class {
|
|
689
|
+
constructor(dom, users = []) {
|
|
690
|
+
this.dom = dom;
|
|
691
|
+
this.users = users.slice();
|
|
692
|
+
}
|
|
693
|
+
render() {
|
|
694
|
+
const container = this.dom.holder.append("div").attr("id", "sjpp-users-render").attr("class", "sjpp-deletable-ai-prjt-admin-div").style("padding", "10px");
|
|
695
|
+
const inputRow = container.append("div").attr("class", "sjpp-users-input-row").style("margin-bottom", "10px");
|
|
696
|
+
const input = inputRow.append("input").attr("type", "text").attr("placeholder", "user@example.com").attr("id", "sjpp-user-email-input").style("margin-right", "8px").style("width", "300px");
|
|
697
|
+
const addBtn = inputRow.append("div").text("Add").classed("sja_menuoption", true).style("display", "inline-block").property("disabled", true).on("click", () => {
|
|
698
|
+
const email = input.property("value").trim();
|
|
699
|
+
const showError = (msg) => {
|
|
700
|
+
sayerror(this.dom.errorDiv, msg);
|
|
701
|
+
setTimeout(() => this.dom.errorDiv.selectAll("*").remove(), 3e3);
|
|
702
|
+
};
|
|
703
|
+
if (email.length === 0) {
|
|
704
|
+
return showError("Email cannot be empty");
|
|
705
|
+
}
|
|
706
|
+
const emailRe = /^[A-Za-z0-9._%+-]+@[A-Za-z0-9.-]+\.[A-Za-z]{2,}$/;
|
|
707
|
+
if (!emailRe.test(email)) {
|
|
708
|
+
return showError("Invalid email address");
|
|
709
|
+
}
|
|
710
|
+
if (this.users.includes(email)) {
|
|
711
|
+
return showError("Email already added");
|
|
712
|
+
}
|
|
713
|
+
this.users.push(email);
|
|
714
|
+
input.property("value", "");
|
|
715
|
+
addBtn.property("disabled", true);
|
|
716
|
+
this.renderTableArea(container);
|
|
717
|
+
});
|
|
718
|
+
input.on("input", () => {
|
|
719
|
+
addBtn.property("disabled", input.property("value").trim().length === 0);
|
|
720
|
+
});
|
|
721
|
+
this.renderTableArea(container);
|
|
722
|
+
}
|
|
723
|
+
renderTableArea(container) {
|
|
724
|
+
container.select(".sjpp-users-table-area").remove();
|
|
725
|
+
const tableDiv = container.append("div").attr("class", "sjpp-users-table-area").style("padding", "6px 0");
|
|
726
|
+
if (!this.users.length) {
|
|
727
|
+
tableDiv.append("div").text("No users added yet.").style("color", "#666");
|
|
728
|
+
return;
|
|
729
|
+
}
|
|
730
|
+
const columns = [{ label: "Email", sortable: true }];
|
|
731
|
+
const columnButtons = [
|
|
732
|
+
{
|
|
733
|
+
text: "\xD7",
|
|
734
|
+
class: "sja_menuoption",
|
|
735
|
+
callback: (_, idx) => {
|
|
736
|
+
this.users.splice(idx, 1);
|
|
737
|
+
container.select(".sjpp-users-table-area").remove();
|
|
738
|
+
this.renderTableArea(container);
|
|
739
|
+
}
|
|
740
|
+
}
|
|
741
|
+
];
|
|
742
|
+
renderTable({
|
|
743
|
+
div: tableDiv,
|
|
744
|
+
rows: this.users.map((u) => [{ value: u }]),
|
|
745
|
+
columns,
|
|
746
|
+
columnButtons,
|
|
747
|
+
singleMode: false,
|
|
748
|
+
striped: false,
|
|
749
|
+
showLines: false,
|
|
750
|
+
resize: true
|
|
751
|
+
});
|
|
752
|
+
tableDiv.selectAll(".sja_menuoption").html("\xD7<div></div>");
|
|
753
|
+
}
|
|
754
|
+
};
|
|
755
|
+
|
|
756
|
+
// plots/aiProjectAdmin/view/CreateProjectRender.ts
|
|
757
|
+
var CreateProjectRender = class {
|
|
758
|
+
constructor(dom, app, interactions) {
|
|
759
|
+
dom.holder.style("padding", "10px 20px").attr("class", "sjpp-deletable-ai-prjt-admin-div");
|
|
760
|
+
const filterDiv = dom.holder.append("div").attr("id", "sjpp-ai-prjt-admin-filter-div");
|
|
761
|
+
const wrapper = dom.holder.append("div").attr("id", "sjpp-ai-prjt-admin-classes-users-wrapper").style("display", "flex").style("gap", "20px").style("align-items", "flex-start").style("padding", "20px 0px");
|
|
762
|
+
const left = wrapper.append("div").attr("id", "sjpp-ai-prjt-admin-classes-table").style("flex", "0 1 auto");
|
|
763
|
+
const right = wrapper.append("div").attr("id", "sjpp-ai-prjt-admin-users").style("width", "320px").style("margin-left", "8px");
|
|
764
|
+
this.dom = {
|
|
765
|
+
holder: dom.holder,
|
|
766
|
+
errorDiv: dom.errorDiv,
|
|
767
|
+
filterDiv,
|
|
768
|
+
classDiv: left,
|
|
769
|
+
usersDiv: right
|
|
770
|
+
};
|
|
771
|
+
this.app = app;
|
|
772
|
+
this.interactions = interactions;
|
|
773
|
+
this.filter = null;
|
|
774
|
+
}
|
|
775
|
+
render() {
|
|
776
|
+
this.renderFilter();
|
|
777
|
+
this.classesTable = new ClassesTableRender(this.dom.classDiv);
|
|
778
|
+
this.usersRender = new UsersRender({ holder: this.dom.usersDiv, errorDiv: this.dom.errorDiv }, []);
|
|
779
|
+
this.usersRender.render();
|
|
780
|
+
this.renderApplyBtn();
|
|
781
|
+
}
|
|
782
|
+
renderFilter() {
|
|
783
|
+
const filter = filterInit({
|
|
784
|
+
holder: this.dom.filterDiv,
|
|
785
|
+
emptyLabel: "Add filter",
|
|
786
|
+
vocabApi: this.app.vocabApi,
|
|
787
|
+
termdbConfig: this.app.vocabApi.termdbConfig,
|
|
788
|
+
callback: (filter2) => {
|
|
789
|
+
this.filter = filter2;
|
|
790
|
+
}
|
|
791
|
+
});
|
|
792
|
+
const state = this.app.getState();
|
|
793
|
+
const root = getNormalRoot(state.termfilter.filter);
|
|
794
|
+
filter.main(root);
|
|
795
|
+
}
|
|
796
|
+
renderApplyBtn() {
|
|
797
|
+
const btn = this.dom.classDiv.append("div").text("Apply").classed("sja_menuoption", true).style("display", "inline-block").style("margin-left", "200px").on("click", async () => {
|
|
798
|
+
btn.attr("disabled", true);
|
|
799
|
+
const selections = await this.interactions.getFilteredImages(this.filter);
|
|
800
|
+
if (this.filter && selections.status !== "ok" || selections.data?.selectedImages?.length === 0) {
|
|
801
|
+
alert("No images match your filter criteria.");
|
|
802
|
+
return;
|
|
803
|
+
}
|
|
804
|
+
if (!this.usersRender || !Array.isArray(this.usersRender.users) || this.usersRender.users.length === 0) {
|
|
805
|
+
alert("Please add at least one user.");
|
|
806
|
+
btn.attr("disabled", null);
|
|
807
|
+
return;
|
|
808
|
+
}
|
|
809
|
+
await this.interactions.addProject({
|
|
810
|
+
project: {
|
|
811
|
+
filter: this.filter,
|
|
812
|
+
classes: this.classesTable.rows.map((row, i) => {
|
|
813
|
+
return { label: row[1].value, color: row[2].color, key_shortcut: `Digit${i + 1}` };
|
|
814
|
+
}),
|
|
815
|
+
users: this.usersRender?.users || []
|
|
816
|
+
}
|
|
817
|
+
});
|
|
818
|
+
this.dom.holder.selectAll("*").remove();
|
|
819
|
+
new SelectorTableRender(this.dom.holder, this.interactions, selections.data);
|
|
820
|
+
});
|
|
821
|
+
}
|
|
822
|
+
/**** Uncomment before production */
|
|
823
|
+
// private validateInput() {
|
|
824
|
+
// const invalidInfo = {
|
|
825
|
+
// entries: [] as { dataType: string; reason: string }[],
|
|
826
|
+
// errorMsg: 'Please clear all "Data type: Class" errors before applying changes.'
|
|
827
|
+
// }
|
|
828
|
+
// //Show user error if no filter is defined.
|
|
829
|
+
// if (!this.filter) {
|
|
830
|
+
// invalidInfo.entries.push({ dataType: 'Filter', reason: 'No filter defined. Did you mean to add a filter?' })
|
|
831
|
+
// }
|
|
832
|
+
// //Check if all classes were deleted
|
|
833
|
+
// const classes = this.classesTable?.rows.map(row => row[1].value) || []
|
|
834
|
+
// if (classes.length === 0) {
|
|
835
|
+
// invalidInfo.entries.push({ dataType: 'Class', reason: 'No classes defined. Did you mean to add a class?' })
|
|
836
|
+
// }
|
|
837
|
+
// //Check to see if any class is still a default class
|
|
838
|
+
// const unchangedClasses =
|
|
839
|
+
// this.classesTable?.rows
|
|
840
|
+
// .filter(row => (row[1]?.value as string)?.startsWith('New class'))
|
|
841
|
+
// .map(r => r[1]?.value as string) || []
|
|
842
|
+
// for (const c of unchangedClasses) {
|
|
843
|
+
// invalidInfo.entries.push({ dataType: 'Class', reason: `${c} is the default class name. Please rename.` })
|
|
844
|
+
// }
|
|
845
|
+
// return invalidInfo
|
|
846
|
+
// }
|
|
847
|
+
};
|
|
848
|
+
|
|
849
|
+
// plots/aiProjectAdmin/AIProjectAdmin.ts
|
|
850
|
+
var AIProjectAdmin = class _AIProjectAdmin extends PlotBase {
|
|
851
|
+
static {
|
|
852
|
+
this.type = "AIProjectAdmin";
|
|
853
|
+
}
|
|
854
|
+
constructor(opts, api) {
|
|
855
|
+
super(opts, api);
|
|
856
|
+
this.type = _AIProjectAdmin.type;
|
|
857
|
+
this.dom = {
|
|
858
|
+
holder: opts.holder,
|
|
859
|
+
errorDiv: opts.holder.append("div").style("margin", "3px").attr("class", "sjpp-ai-prjt-admin-error")
|
|
860
|
+
};
|
|
861
|
+
if (opts.header) this.dom.header = opts.header;
|
|
862
|
+
this.prjtRepo = new ProjectReposity();
|
|
863
|
+
}
|
|
864
|
+
getState(appState) {
|
|
865
|
+
const config = appState.plots.find((p) => p.id === this.id);
|
|
866
|
+
if (!config) {
|
|
867
|
+
throw `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`;
|
|
868
|
+
}
|
|
869
|
+
return {
|
|
870
|
+
config,
|
|
871
|
+
vocab: appState.vocab,
|
|
872
|
+
filter: appState.termfilter.filter
|
|
873
|
+
};
|
|
874
|
+
}
|
|
875
|
+
async displayProjects(state, interactions) {
|
|
876
|
+
try {
|
|
877
|
+
this.projects = await this.prjtRepo.getProjects(state.vocab.genome, state.vocab.dslabel);
|
|
878
|
+
} catch (e) {
|
|
879
|
+
console.error("Error initializing AIProjectAdmin:", e);
|
|
880
|
+
throw e;
|
|
881
|
+
}
|
|
882
|
+
this.prjtAdminUI = new ProjectAdminRender(this.dom, this.projects, interactions, this.app);
|
|
883
|
+
this.prjtAdminUI.renderProjectAdmin();
|
|
884
|
+
}
|
|
885
|
+
async init(appState) {
|
|
886
|
+
this.interactions = new AIProjectAdminInteractions(this.app, this.id, this.prjtRepo);
|
|
887
|
+
await this.displayProjects(appState, this.interactions);
|
|
888
|
+
}
|
|
889
|
+
async main() {
|
|
890
|
+
const state = structuredClone(this.state);
|
|
891
|
+
const config = state.config;
|
|
892
|
+
if (config.chartType != this.type) return;
|
|
893
|
+
const project = config.settings.project;
|
|
894
|
+
if (!project) return;
|
|
895
|
+
if (!this.interactions) throw new Error("AIProjectAdminInteractions not initialized");
|
|
896
|
+
this.dom.holder.selectAll(".sjpp-deletable-ai-prjt-admin-div").remove();
|
|
897
|
+
if (project.type === "new") {
|
|
898
|
+
const terms = await this.prjtRepo.getTerms(this.app);
|
|
899
|
+
if (!terms || terms.length === 0) {
|
|
900
|
+
sayerror(this.dom.errorDiv, "No metadata found.");
|
|
901
|
+
return;
|
|
902
|
+
}
|
|
903
|
+
const createProjectRender = new CreateProjectRender(this.dom, this.app, this.interactions);
|
|
904
|
+
createProjectRender.render();
|
|
905
|
+
}
|
|
906
|
+
if (project.type == "existing") {
|
|
907
|
+
if (!project.name) {
|
|
908
|
+
sayerror(this.dom.errorDiv, "Project name not provided.");
|
|
909
|
+
return;
|
|
910
|
+
}
|
|
911
|
+
if (!project.id) {
|
|
912
|
+
const existingProject = this.projects?.find((p) => p.name === project.name);
|
|
913
|
+
if (!existingProject) {
|
|
914
|
+
sayerror(this.dom.errorDiv, `Project ${project.name} not found.`);
|
|
915
|
+
return;
|
|
916
|
+
}
|
|
917
|
+
await this.app.save({
|
|
918
|
+
type: "plot_edit",
|
|
919
|
+
id: this.id,
|
|
920
|
+
config: { settings: { project: { id: existingProject.id } } }
|
|
921
|
+
});
|
|
922
|
+
}
|
|
923
|
+
await this.interactions.launchViewer(this.dom.holder, []);
|
|
924
|
+
}
|
|
925
|
+
if (project.type === "logout") {
|
|
926
|
+
await this.displayProjects(state, this.interactions);
|
|
927
|
+
}
|
|
928
|
+
}
|
|
929
|
+
};
|
|
930
|
+
var aiProjectAdminInit = getCompInit(AIProjectAdmin);
|
|
931
|
+
var componentInit = aiProjectAdminInit;
|
|
932
|
+
async function getPlotConfig(opts) {
|
|
933
|
+
const config = {
|
|
934
|
+
chartType: "AIProjectAdmin",
|
|
935
|
+
subfolder: "aiProjectAdmin",
|
|
936
|
+
extension: "ts",
|
|
937
|
+
hidePlotFilter: true,
|
|
938
|
+
//Disable the filter in the sandbox header
|
|
939
|
+
settings: getDefaultAIProjectAdminSettings(opts.overrides)
|
|
940
|
+
};
|
|
941
|
+
if (opts.settings?.project && !opts.settings?.project?.type) {
|
|
942
|
+
opts.settings.project.type = "existing";
|
|
943
|
+
}
|
|
944
|
+
return copyMerge(config, opts);
|
|
945
|
+
}
|
|
946
|
+
export {
|
|
947
|
+
aiProjectAdminInit,
|
|
948
|
+
componentInit,
|
|
949
|
+
getPlotConfig
|
|
950
|
+
};
|
|
951
|
+
//# sourceMappingURL=AIProjectAdmin-2CKKFC3A.js.map
|