@sjcrh/proteinpaint-client 2.196.0 → 2.198.0

package/dist/chunk-LFCYMSVA.js

@@ -0,0 +1,314 @@
+import {
+  getColors
+} from "./chunk-2X6W4E3W.js";
+import {
+  convertUnits,
+  isNumeric,
+  isStrictNumeric
+} from "./chunk-JNITUVXP.js";
+import {
+  format
+} from "./chunk-NSTL4MY2.js";
+
+// ../shared/utils/dist/src/boxplot.js
+function boxplot_getvalue(lst, removeOutliers = false) {
+  const l = lst.length;
+  if (l < 5) return { out: lst };
+  const isN = typeof lst[0] === "number";
+  const valueOf = isN ? (item) => item : (item) => item.value;
+  const p50 = valueOf(lst[Math.floor(l / 2)]);
+  const p25 = valueOf(lst[Math.floor(l / 4)]);
+  const p75 = valueOf(lst[Math.floor(l * 3 / 4)]);
+  const p05 = valueOf(lst[Math.floor(l * 0.05)]);
+  const p95 = valueOf(lst[Math.floor(l * 0.95)]);
+  const iqr = p75 - p25;
+  let w1, w2;
+  if (iqr === 0) {
+    w1 = p25;
+    w2 = p25;
+  } else {
+    const i = lst.findIndex((item) => valueOf(item) > p25 - iqr * 1.5);
+    w1 = valueOf(lst[i === -1 ? 0 : i]);
+    const j = lst.findIndex((item) => valueOf(item) > p75 + iqr * 1.5);
+    w2 = valueOf(lst[j === -1 ? l - 1 : j - 1]);
+  }
+  const out = removeOutliers ? [] : lst.filter((item) => valueOf(item) < p25 - iqr * 1.5 || valueOf(item) > p75 + iqr * 1.5);
+  return { w1, w2, p05, p25, p50, p75, p95, iqr, out };
+}
+
+// ../shared/utils/dist/src/termdb.bins.js
+function validate_bins(binconfig) {
+  const bc = binconfig;
+  if (!bc || typeof bc !== "object") throw "bin schema must be an object";
+  if (!("type" in bc)) bc.type = "regular-bin";
+  if (bc.type == "custom-bin") {
+    if (!Array.isArray(bc.lst)) throw "binconfig.lst must be an array";
+    if (!bc.lst.length) throw "binconfig.lst must have entries";
+    const first_bin = bc.lst[0];
+    const last_bin = bc.lst[bc.lst.length - 1];
+    for (const bin of bc.lst) {
+      if (!("startinclusive" in bin) && !("stopinclusive" in bin)) {
+        throw "custom bin.startinclusive and/or bin.stopinclusive must be defined";
+      }
+      if (bin == first_bin) {
+        if ("startunbounded" in bin && !bin.startunbounded) {
+          throw `a custom first bin must not set bin.startunbounded to false`;
+        }
+        bin.startunbounded = true;
+        if ("start" in bin) {
+          throw "a custom first bin must not set a bin.start value";
+        }
+        if ("start_percentile" in bin) {
+          throw "the first bin must not set a bin.start_percentile value";
+        }
+        if (!("stop" in bin)) {
+          throw `a custom first bin must define a bin.stop value`;
+        }
+        if (!isStrictNumeric(bin.stop)) {
+          throw `a custom first bin.stop value should be numeric`;
+        }
+      } else if (bin == last_bin) {
+        if (!("start" in bin)) {
+          throw `a custom last bin must define a bin.start value`;
+        }
+        if (!isStrictNumeric(bin.start)) {
+          throw `a custom last bin.start must be numeric`;
+        }
+        if ("stopunbounded" in bin && !bin.stopunbounded) {
+          throw "a custom last bin must not set bin.stopunbounded to false";
+        }
+        bin.stopunbounded = true;
+        if ("stop" in bin) {
+          throw "a custom last bin must not set a bin.stop value";
+        }
+      } else {
+        if (bin.startunbounded || bin.stopunbounded) {
+          throw "bin.startunbounded and bin.stopunbounded must not be set for non-first/non-last bins";
+        }
+        if (!isStrictNumeric(bin.start)) throw "bin.start must be numeric for a non-first bin";
+        if (!isStrictNumeric(bin.stop)) throw "bin.stop must be numeric for a non-last bin";
+      }
+    }
+  } else if (bc.type == "regular-bin") {
+    if (!Number.isFinite(bc.bin_size)) throw "non-numeric bin_size";
+    if (bc.bin_size <= 0) throw "bin_size must be greater than 0";
+    if (!bc.startinclusive && !bc.stopinclusive) {
+      bc.startinclusive = 1;
+      bc.stopinclusive = 0;
+    }
+    if (!bc.first_bin) throw "first_bin{} missing";
+    if (typeof bc.first_bin != "object") throw "first_bin{} is not an object";
+    if (!Object.keys(bc.first_bin).length) throw "first_bin is an empty object";
+    {
+      const b = bc.first_bin;
+      b.startunbounded = true;
+      if (b.stop_percentile) {
+        if (!Number.isInteger(b.stop_percentile)) throw "first_bin.stop_percentile should be integer";
+        if (b.stop_percentile <= 0 || b.stop_percentile >= 100) throw "first_bin.stop_percentile out of bound (0-100)";
+      } else if (!Number.isFinite(b.stop)) {
+        throw "first_bin.stop not a number when stop_percentile is not set";
+      }
+    }
+    if (bc.last_bin) {
+      const b = bc.last_bin;
+      if (b.start_percentile) {
+        if (!Number.isInteger(b.start_percentile)) throw "last_bin.start_percentile should be integer";
+        if (b.start_percentile <= 0 || b.start_percentile >= 100) throw "last_bin.start_percentile out of bound (0-100)";
+      } else if (!Number.isFinite(b.start)) {
+        throw "last_bin.start not a number when start_percentile is not set";
+      }
+      b.stopunbounded = true;
+      if ("stop" in b) {
+        throw "a regular last bin must not set a bin.stop value";
+      }
+    }
+  } else {
+    throw `invalid binconfig.type="${bc.type}"`;
+  }
+}
+var maxNumBins = 100;
+function compute_bins(binconfig, summaryfxn, valueConversion) {
+  const bc = binconfig;
+  validate_bins(bc);
+  if (bc.lst) {
+    if (!Array.isArray(bc.lst)) throw `bc.lst is not an array`;
+    if (bc.lst.length > maxNumBins) throw `bc.lst exceed the maximum of ${maxNumBins} allowed entries`;
+    const k2c2 = getColors(bc.lst.length);
+    for (const bin of bc.lst) bin.color = k2c2(bin.label);
+  }
+  if (bc.type == "custom-bin") return JSON.parse(JSON.stringify(bc.lst));
+  if (typeof summaryfxn != "function") throw "summaryfxn required for modules/termdb.bins.js compute_bins()";
+  const percentiles = target_percentiles(bc);
+  const summary = summaryfxn(percentiles);
+  if (!summary || typeof summary !== "object") throw "invalid returned value by summaryfxn";
+  bc.results = { summary };
+  if (!bc.binLabelFormatter) bc.binLabelFormatter = getNumDecimalsFormatter(bc);
+  const minFloor = Math.floor(summary.min * 100) / 100;
+  const maxCeil = Math.ceil(summary.max * 100) / 100;
+  const min = bc.first_bin.startunbounded ? minFloor : bc.first_bin.start_percentile ? summary["p" + bc.first_bin.start_percentile] : bc.first_bin.start;
+  let max = maxCeil, last_start, last_stop;
+  if (bc.last_bin) {
+    max = bc.last_bin.stopunbounded ? maxCeil : bc.last_bin.stop_percentile ? summary["p" + bc.last_bin.stop_percentile] : isNumeric(bc.last_bin.stop) && bc.last_bin.stop <= summary.max ? bc.last_bin.stop : maxCeil;
+    last_start = isStrictNumeric(bc.last_bin.start_percentile) ? summary["p" + bc.last_bin.start_percentile] : isStrictNumeric(bc.last_bin.start) ? bc.last_bin.start : void 0;
+    last_stop = bc.last_bin.stopunbounded ? null : bc.last_bin.stop_percentile ? summary["p" + bc.last_bin.stop_percentile] : isStrictNumeric(bc.last_bin.stop) ? bc.last_bin.stop : null;
+  } else if (bc.lst) {
+    const last_bin = bc.lst[bc.lst.length - 1];
+    last_start = last_bin.start;
+    last_stop = "stop" in last_bin && !last_bin.stopunbounded ? last_bin.stop : maxCeil;
+    max = last_stop;
+  } else {
+    last_start = maxCeil;
+    last_stop = maxCeil;
+  }
+  const numericMax = isStrictNumeric(max);
+  const numericLastStart = isStrictNumeric(last_start);
+  const numericLastStop = isStrictNumeric(last_stop);
+  if (!numericMax && !numericLastStart) return [];
+  const bins = [];
+  let currBin = {
+    startunbounded: bc.first_bin.startunbounded,
+    start: bc.first_bin.startunbounded ? void 0 : min,
+    stop: isStrictNumeric(bc.first_bin.stop_percentile) ? +summary["p" + bc.first_bin.stop_percentile] : isStrictNumeric(bc.first_bin.stop) ? +bc.first_bin.stop : min + bc.bin_size,
+    startinclusive: bc.startinclusive,
+    stopinclusive: bc.stopinclusive
+  };
+  if (!isStrictNumeric(currBin.stop)) throw "the computed first_bin.stop is non-numeric" + currBin.stop;
+  while (numericMax && currBin.stop <= max || currBin.startunbounded && !bins.length || currBin.stopunbounded) {
+    bins.push(currBin);
+    if (currBin.stop >= max) {
+      currBin.stopunbounded = true;
+      if (bins.length > 1) {
+        delete currBin.stop;
+      }
+    }
+    currBin.label = get_bin_label(currBin, bc, valueConversion);
+    if (currBin.stopunbounded) break;
+    const upper = currBin.stop + bc.bin_size;
+    const previousStop = currBin.stop;
+    currBin = {
+      startinclusive: bc.startinclusive,
+      stopinclusive: bc.stopinclusive,
+      start: previousStop,
+      stop: numericLastStop && (previousStop == last_start || upper > last_stop) ? last_stop : numericLastStart && upper > last_start && previousStop != last_start ? last_start : upper
+    };
+    if (currBin.stop >= max) {
+      currBin.stop = max;
+      if (bc.last_bin && bc.last_bin.stopunbounded) currBin.stopunbounded = 1;
+      if (bc.last_bin && bc.last_bin.stopinclusive) currBin.stopinclusive = 1;
+    }
+    if (numericLastStart && currBin.start == last_start) {
+      if (bc.last_bin && bc.last_bin.stopunbounded) currBin.stopunbounded = 1;
+    }
+    if (currBin.start > currBin.stop) {
+      if (numericLastStart && currBin.stop == last_start && bc.last_bin && bc.last_bin.stopunbounded)
+        currBin.stopunbounded = true;
+      else break;
+    }
+    if (bins.length + 1 >= maxNumBins) {
+      delete currBin.stop;
+      currBin.stopunbounded = true;
+      currBin.label = get_bin_label(currBin, bc, valueConversion);
+      if (!bins.includes(currBin)) bins.push(currBin);
+      const hint = "Please increase the bin_size or first bin stop, or have a lower last bin start.";
+      throw new Error(hint + " (max_num_bins_reached)");
+    }
+  }
+  delete bc.binLabelFormatter;
+  if (bins.length > 1) {
+    delete bins[bins.length - 1].stop;
+  }
+  const k2c = getColors(bins.length);
+  for (const bin of bins) bin.color = k2c(bin.label);
+  return bins;
+}
+function getNumDecimalsFormatter(bc) {
+  return "rounding" in bc ? format(bc.rounding) : (d) => d;
+}
+function get_bin_label(bin, binconfig, valueConversion) {
+  if (!bin) return "missing bin.label";
+  if (bin.label) return bin.label;
+  const bc = binconfig;
+  if (!bc.binLabelFormatter) bc.binLabelFormatter = getNumDecimalsFormatter(bc);
+  if (!bin.startunbounded && !bin.stopunbounded && !("startinclusive" in bin) && !("stopinclusive" in bin)) {
+    if (bc.startinclusive) bin.startinclusive = true;
+    else if (bc.stopinclusive) bin.stopinclusive = true;
+  }
+  const start = bc.use_as == "bins" || bin.start;
+  const stop = bc.use_as == "bins" || bin.stop;
+  let label_offset = 0;
+  if ("label_offset" in bc) {
+    bc.label_offset_ignored = "bin_size" in bc && bc.bin_size < bc.label_offset;
+    if (!bc.label_offset_ignored) label_offset = bc.label_offset;
+  } else if (bc.bin_size === 1 && bc.termtype == "integer") {
+    label_offset = 1;
+  }
+  if (bin.startunbounded) {
+    const oper = bin.stopinclusive ? "\u2264" : "<";
+    const v1 = valueConversion ? convertUnits(stop, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : bc.binLabelFormatter(stop);
+    return oper + v1;
+  }
+  if (bin.stopunbounded || start === stop) {
+    const oper = bin.startinclusive ? "\u2265" : ">";
+    const v0 = valueConversion ? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : bc.binLabelFormatter(start);
+    return oper + v0;
+  }
+  if (label_offset && bin.startinclusive && !bin.stopinclusive) {
+    if (Number.isInteger(bc.bin_size) && Math.abs(start - stop) === label_offset) {
+      return "" + (valueConversion ? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : bc.binLabelFormatter(start));
+    } else {
+      const v0 = valueConversion ? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : bc.binLabelFormatter(start);
+      const v1 = valueConversion ? convertUnits(
+        stop - label_offset,
+        valueConversion.fromUnit,
+        valueConversion.toUnit,
+        valueConversion.scaleFactor,
+        true
+      ) : bc.binLabelFormatter(stop - label_offset);
+      return +v0 >= +v1 ? v0.toString() : v0 + " to " + v1;
+    }
+  } else {
+    const oper0 = bin.startinclusive ? "" : ">";
+    const oper1 = bin.stopinclusive ? "" : "<";
+    const v0 = valueConversion ? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : Number.isInteger(start) ? start : bc.binLabelFormatter(start);
+    const v1 = valueConversion ? convertUnits(stop, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true) : Number.isInteger(stop) ? stop : bc.binLabelFormatter(stop);
+    if (+v0 >= +v1) {
+      const oper = bin.startinclusive ? "\u2265" : ">";
+      return oper + v0;
+    } else {
+      return oper0 + v0 + " to " + oper1 + v1;
+    }
+  }
+}
+function get_bin_range_equation(bin, binconfig) {
+  const x = '<span style="font-family:Times;font-style:italic;">x</span>';
+  let range_eq;
+  const copy = structuredClone(bin);
+  copy.label = "";
+  const bin_label = get_bin_label(copy, binconfig, void 0);
+  if (bin.startunbounded || bin.stopunbounded) {
+    range_eq = x + " " + bin_label;
+  } else if (bin.startinclusive) {
+    range_eq = bin_label.replace("to <", "\u2264 " + x + " <");
+  } else if (bin.stopinclusive) {
+    range_eq = bin_label.replace(">", "").replace("to", "< " + x + " \u2264");
+  }
+  return range_eq;
+}
+function target_percentiles(binconfig) {
+  const percentiles = [];
+  const f = binconfig.first_bin;
+  if (f && isStrictNumeric(f.start_percentile)) percentiles.push(f.start_percentile);
+  if (f && isStrictNumeric(f.stop_percentile)) percentiles.push(f.stop_percentile);
+  const l = binconfig.last_bin;
+  if (l && isStrictNumeric(l.start_percentile)) percentiles.push(l.start_percentile);
+  if (l && isStrictNumeric(l.stop_percentile)) percentiles.push(l.stop_percentile);
+  return percentiles;
+}
+
+export {
+  boxplot_getvalue,
+  compute_bins,
+  get_bin_label,
+  get_bin_range_equation
+};
+//# sourceMappingURL=chunk-LFCYMSVA.js.map

package/dist/chunk-LFCYMSVA.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../../shared/utils/src/boxplot.ts", "../../shared/utils/src/termdb.bins.ts"],
+  "sourcesContent": ["export type BoxplotValue = { value: number }\n\nexport type BoxplotResult<T extends number | BoxplotValue> = {\n\tw1?: number\n\tw2?: number\n\tp05?: number\n\tp25?: number\n\tp50?: number\n\tp75?: number\n\tp95?: number\n\tiqr?: number\n\tout: T[]\n}\n\n/**\n * Calculates boxplot values from an ascending array. Object inputs are retained\n * in `out`; numeric inputs return numeric outliers.\n */\nexport function boxplot_getvalue<T extends number | BoxplotValue>(lst: T[], removeOutliers = false): BoxplotResult<T> {\n\tconst l = lst.length\n\tif (l < 5) return { out: lst }\n\n\tconst isN = typeof lst[0] === 'number'\n\n\tconst valueOf: (item: T) => number = isN ? item => item as number : item => (item as BoxplotValue).value\n\n\tconst p50 = valueOf(lst[Math.floor(l / 2)])\n\tconst p25 = valueOf(lst[Math.floor(l / 4)])\n\tconst p75 = valueOf(lst[Math.floor((l * 3) / 4)])\n\tconst p05 = valueOf(lst[Math.floor(l * 0.05)])\n\tconst p95 = valueOf(lst[Math.floor(l * 0.95)])\n\tconst iqr = p75 - p25\n\n\tlet w1: number, w2: number\n\tif (iqr === 0) {\n\t\tw1 = p25\n\t\tw2 = p25\n\t} else {\n\t\tconst i = lst.findIndex(item => valueOf(item) > p25 - iqr * 1.5)\n\t\tw1 = valueOf(lst[i === -1 ? 0 : i])\n\t\tconst j = lst.findIndex(item => valueOf(item) > p75 + iqr * 1.5)\n\t\tw2 = valueOf(lst[j === -1 ? l - 1 : j - 1])\n\t}\n\tconst out = removeOutliers\n\t\t? []\n\t\t: lst.filter(item => valueOf(item) < p25 - iqr * 1.5 || valueOf(item) > p75 + iqr * 1.5)\n\treturn { w1, w2, p05, p25, p50, p75, p95, iqr, out }\n}\n", "import { format } from 'd3-format'\nimport { getColors } from './common.js'\nimport { isNumeric, isStrictNumeric, convertUnits } from './helpers.js'\n\nexport default function validate_bins(binconfig) {\n\t// Number.isFinite('1') returns false, which is desired\n\n\tconst bc = binconfig\n\tif (!bc || typeof bc !== 'object') throw 'bin schema must be an object'\n\t// assign default type\n\tif (!('type' in bc)) bc.type = 'regular-bin'\n\n\tif (bc.type == 'custom-bin') {\n\t\tif (!Array.isArray(bc.lst)) throw 'binconfig.lst must be an array'\n\t\tif (!bc.lst.length) throw 'binconfig.lst must have entries'\n\t\tconst first_bin = bc.lst[0]\n\t\tconst last_bin = bc.lst[bc.lst.length - 1]\n\n\t\tfor (const bin of bc.lst) {\n\t\t\tif (!('startinclusive' in bin) && !('stopinclusive' in bin)) {\n\t\t\t\tthrow 'custom bin.startinclusive and/or bin.stopinclusive must be defined'\n\t\t\t}\n\n\t\t\tif (bin == first_bin) {\n\t\t\t\tif ('startunbounded' in bin && !bin.startunbounded) {\n\t\t\t\t\tthrow `a custom first bin must not set bin.startunbounded to false`\n\t\t\t\t}\n\t\t\t\tbin.startunbounded = true\n\t\t\t\tif ('start' in bin) {\n\t\t\t\t\tthrow 'a custom first bin must not set a bin.start value'\n\t\t\t\t}\n\t\t\t\tif ('start_percentile' in bin) {\n\t\t\t\t\tthrow 'the first bin must not set a bin.start_percentile value'\n\t\t\t\t}\n\t\t\t\tif (!('stop' in bin)) {\n\t\t\t\t\tthrow `a custom first bin must define a bin.stop value`\n\t\t\t\t}\n\t\t\t\tif (!isStrictNumeric(bin.stop)) {\n\t\t\t\t\tthrow `a custom first bin.stop value should be numeric`\n\t\t\t\t}\n\t\t\t} else if (bin == last_bin) {\n\t\t\t\tif (!('start' in bin)) {\n\t\t\t\t\tthrow `a custom last bin must define a bin.start value`\n\t\t\t\t}\n\t\t\t\tif (!isStrictNumeric(bin.start)) {\n\t\t\t\t\tthrow `a custom last bin.start must be numeric`\n\t\t\t\t}\n\t\t\t\tif ('stopunbounded' in bin && !bin.stopunbounded) {\n\t\t\t\t\tthrow 'a custom last bin must not set bin.stopunbounded to false'\n\t\t\t\t}\n\t\t\t\tbin.stopunbounded = true\n\t\t\t\tif ('stop' in bin) {\n\t\t\t\t\tthrow 'a custom last bin must not set a bin.stop value'\n\t\t\t\t}\n\t\t\t} else {\n\t\t\t\tif (bin.startunbounded || bin.stopunbounded) {\n\t\t\t\t\tthrow 'bin.startunbounded and bin.stopunbounded must not be set for non-first/non-last bins'\n\t\t\t\t}\n\t\t\t\tif (!isStrictNumeric(bin.start)) throw 'bin.start must be numeric for a non-first bin'\n\t\t\t\tif (!isStrictNumeric(bin.stop)) throw 'bin.stop must be numeric for a non-last bin'\n\t\t\t}\n\t\t}\n\t} else if (bc.type == 'regular-bin') {\n\t\t// required custom_bin parameter\n\t\tif (!Number.isFinite(bc.bin_size)) throw 'non-numeric bin_size'\n\t\tif (bc.bin_size <= 0) throw 'bin_size must be greater than 0'\n\n\t\tif (!bc.startinclusive && !bc.stopinclusive) {\n\t\t\tbc.startinclusive = 1\n\t\t\tbc.stopinclusive = 0\n\t\t}\n\n\t\tif (!bc.first_bin) throw 'first_bin{} missing'\n\t\tif (typeof bc.first_bin != 'object') throw 'first_bin{} is not an object'\n\t\tif (!Object.keys(bc.first_bin).length) throw 'first_bin is an empty object'\n\n\t\t{\n\t\t\tconst b = bc.first_bin\n\t\t\tb.startunbounded = true\n\t\t\t// requires stop_percentile, or stop\n\t\t\tif (b.stop_percentile) {\n\t\t\t\tif (!Number.isInteger(b.stop_percentile)) throw 'first_bin.stop_percentile should be integer'\n\t\t\t\tif (b.stop_percentile <= 0 || b.stop_percentile >= 100) throw 'first_bin.stop_percentile out of bound (0-100)'\n\t\t\t} else if (!Number.isFinite(b.stop)) {\n\t\t\t\tthrow 'first_bin.stop not a number when stop_percentile is not set'\n\t\t\t}\n\t\t}\n\n\t\tif (bc.last_bin) {\n\t\t\tconst b = bc.last_bin\n\t\t\t// requires start_percentile or start\n\t\t\tif (b.start_percentile) {\n\t\t\t\tif (!Number.isInteger(b.start_percentile)) throw 'last_bin.start_percentile should be integer'\n\t\t\t\tif (b.start_percentile <= 0 || b.start_percentile >= 100) throw 'last_bin.start_percentile out of bound (0-100)'\n\t\t\t} else if (!Number.isFinite(b.start)) {\n\t\t\t\tthrow 'last_bin.start not a number when start_percentile is not set'\n\t\t\t}\n\n\t\t\tb.stopunbounded = true\n\t\t\tif ('stop' in b) {\n\t\t\t\tthrow 'a regular last bin must not set a bin.stop value'\n\t\t\t}\n\t\t}\n\t} else {\n\t\tthrow `invalid binconfig.type=\"${bc.type}\"`\n\t}\n}\n\nconst maxNumBins = 100 // hardcoded limit for now to not stress sqlite\n\nexport function compute_bins(binconfig, summaryfxn, valueConversion) {\n\t/*\n\t  Bins generator\n\t  \n\tbinconfig   \n\t  configuration of bins per the Numerical Binning Scheme\n\n\tsummaryfxn (percentiles)=> return {min, max, pX, pY, ...}\n\t  - required function\n\n\t  - must accept an array of desired percentile values\n\t  and returns an object of computed properties\n\t  {\n\t    min: minimum value\n\t    max: maximum value\n\t    pX: percentile at X value, so p10 will be 10th percentile value\n\t    pY: .. corresponding to the desired percentile values \n\t  }\n\t*/\n\tconst bc = binconfig\n\n\tvalidate_bins(bc)\n\tif (bc.lst) {\n\t\tif (!Array.isArray(bc.lst)) throw `bc.lst is not an array`\n\t\tif (bc.lst.length > maxNumBins) throw `bc.lst exceed the maximum of ${maxNumBins} allowed entries`\n\t\tconst k2c = getColors(bc.lst.length) //to color bins\n\t\tfor (const bin of bc.lst) bin.color = k2c(bin.label)\n\t}\n\tif (bc.type == 'custom-bin') return JSON.parse(JSON.stringify(bc.lst))\n\tif (typeof summaryfxn != 'function') throw 'summaryfxn required for modules/termdb.bins.js compute_bins()'\n\tconst percentiles = target_percentiles(bc)\n\tconst summary = summaryfxn(percentiles)\n\tif (!summary || typeof summary !== 'object') throw 'invalid returned value by summaryfxn'\n\tbc.results = { summary }\n\tif (!bc.binLabelFormatter) bc.binLabelFormatter = getNumDecimalsFormatter(bc)\n\n\t// round the min and max values for use as bin start and stop\n\t// in the first and last bins, respectively\n\tconst minFloor = Math.floor(summary.min * 100) / 100\n\tconst maxCeil = Math.ceil(summary.max * 100) / 100\n\tconst min = bc.first_bin.startunbounded\n\t\t? minFloor\n\t\t: bc.first_bin.start_percentile\n\t\t? summary['p' + bc.first_bin.start_percentile]\n\t\t: bc.first_bin.start\n\tlet max = maxCeil, // in order to include the max value in the last bin\n\t\tlast_start,\n\t\tlast_stop\n\n\tif (bc.last_bin) {\n\t\tmax = bc.last_bin.stopunbounded\n\t\t\t? maxCeil // in order to include the max value in the last bin\n\t\t\t: bc.last_bin.stop_percentile\n\t\t\t? summary['p' + bc.last_bin.stop_percentile]\n\t\t\t: isNumeric(bc.last_bin.stop) && bc.last_bin.stop <= summary.max // '0.0088' < 0.0088\n\t\t\t? bc.last_bin.stop\n\t\t\t: maxCeil // in order to include the max value in the last bin\n\t\tlast_start = isStrictNumeric(bc.last_bin.start_percentile)\n\t\t\t? summary['p' + bc.last_bin.start_percentile]\n\t\t\t: isStrictNumeric(bc.last_bin.start)\n\t\t\t? bc.last_bin.start\n\t\t\t: undefined\n\t\tlast_stop = bc.last_bin.stopunbounded\n\t\t\t? null\n\t\t\t: bc.last_bin.stop_percentile\n\t\t\t? summary['p' + bc.last_bin.stop_percentile]\n\t\t\t: isStrictNumeric(bc.last_bin.stop)\n\t\t\t? bc.last_bin.stop\n\t\t\t: null\n\t} else if (bc.lst) {\n\t\tconst last_bin = bc.lst[bc.lst.length - 1]\n\t\tlast_start = last_bin.start\n\t\tlast_stop = 'stop' in last_bin && !last_bin.stopunbounded ? last_bin.stop : maxCeil\n\t\tmax = last_stop\n\t} else {\n\t\tlast_start = maxCeil\n\t\tlast_stop = maxCeil\n\t}\n\n\tconst numericMax = isStrictNumeric(max)\n\tconst numericLastStart = isStrictNumeric(last_start)\n\tconst numericLastStop = isStrictNumeric(last_stop)\n\n\tif (!numericMax && !numericLastStart) return [] //throw 'unable to compute the last bin start or stop'\n\n\tconst bins: any[] = []\n\tlet currBin: Record<string, any> = {\n\t\tstartunbounded: bc.first_bin.startunbounded,\n\t\tstart: bc.first_bin.startunbounded ? undefined : min,\n\t\tstop: isStrictNumeric(bc.first_bin.stop_percentile)\n\t\t\t? +summary['p' + bc.first_bin.stop_percentile]\n\t\t\t: isStrictNumeric(bc.first_bin.stop)\n\t\t\t? +bc.first_bin.stop\n\t\t\t: min + bc.bin_size,\n\t\tstartinclusive: bc.startinclusive,\n\t\tstopinclusive: bc.stopinclusive\n\t}\n\n\tif (!isStrictNumeric(currBin.stop)) throw 'the computed first_bin.stop is non-numeric' + currBin.stop\n\n\twhile ((numericMax && currBin.stop <= max) || (currBin.startunbounded && !bins.length) || currBin.stopunbounded) {\n\t\tbins.push(currBin)\n\t\t// force a computed last bin to have stopunbounded true\n\t\tif (currBin.stop >= max) {\n\t\t\tcurrBin.stopunbounded = true\n\t\t\tif (bins.length > 1) {\n\t\t\t\tdelete currBin.stop\n\t\t\t}\n\t\t}\n\t\tcurrBin.label = get_bin_label(currBin, bc, valueConversion)\n\t\tif (currBin.stopunbounded) break\n\n\t\tconst upper = currBin.stop + bc.bin_size\n\t\tconst previousStop = currBin.stop\n\t\tcurrBin = {\n\t\t\tstartinclusive: bc.startinclusive,\n\t\t\tstopinclusive: bc.stopinclusive,\n\t\t\tstart: previousStop,\n\t\t\tstop:\n\t\t\t\tnumericLastStop && (previousStop == last_start || upper > last_stop)\n\t\t\t\t\t? last_stop\n\t\t\t\t\t: numericLastStart && upper > last_start && previousStop != last_start\n\t\t\t\t\t? last_start\n\t\t\t\t\t: upper\n\t\t}\n\n\t\tif (currBin.stop >= max) {\n\t\t\tcurrBin.stop = max\n\t\t\tif (bc.last_bin && bc.last_bin.stopunbounded) currBin.stopunbounded = 1\n\t\t\tif (bc.last_bin && bc.last_bin.stopinclusive) currBin.stopinclusive = 1\n\t\t}\n\t\tif (numericLastStart && currBin.start == last_start) {\n\t\t\tif (bc.last_bin && bc.last_bin.stopunbounded) currBin.stopunbounded = 1\n\t\t}\n\t\tif (currBin.start > currBin.stop) {\n\t\t\tif (numericLastStart && currBin.stop == last_start && bc.last_bin && bc.last_bin.stopunbounded)\n\t\t\t\tcurrBin.stopunbounded = true\n\t\t\telse break\n\t\t}\n\t\tif (bins.length + 1 >= maxNumBins) {\n\t\t\t// this limit is computed before processing actual numeric values, since\n\t\t\t// the computation with actual values may be problematic when there are lots of bins\n\t\t\tdelete currBin.stop\n\t\t\tcurrBin.stopunbounded = true\n\t\t\tcurrBin.label = get_bin_label(currBin, bc, valueConversion)\n\t\t\tif (!bins.includes(currBin)) bins.push(currBin)\n\t\t\tconst hint = 'Please increase the bin_size or first bin stop, or have a lower last bin start.'\n\t\t\t// throw instead of making the error handling dependent on client code,\n\t\t\t// to make the error behavior consistent across different chart types;\n\t\t\t// previously, the error message was not thrown but assigned as bc.error\n\t\t\tthrow new Error(hint + ' (max_num_bins_reached)')\n\t\t}\n\t}\n\tdelete bc.binLabelFormatter\n\tif (bins.length > 1) {\n\t\tdelete bins[bins.length - 1].stop\n\t}\n\tconst k2c = getColors(bins.length) //to color bins\n\tfor (const bin of bins) bin.color = k2c(bin.label)\n\treturn bins\n}\n\nfunction getNumDecimalsFormatter(bc) {\n\t//return format('rounding' in bc ? bc.rounding : '')\n\treturn 'rounding' in bc ? format(bc.rounding) : d => d // default to labeling using the start/stop value as-is\n}\n\nexport function get_bin_label(bin, binconfig, valueConversion?: any) {\n\t/*\n\t  Generate a numeric bin label given a bin configuration and an optional term valueConversion object\n\t*/\n\tif (!bin) return 'missing bin.label'\n\tif (bin.label) return bin.label\n\n\tconst bc = binconfig\n\tif (!bc.binLabelFormatter) bc.binLabelFormatter = getNumDecimalsFormatter(bc)\n\tif (!bin.startunbounded && !bin.stopunbounded && !('startinclusive' in bin) && !('stopinclusive' in bin)) {\n\t\tif (bc.startinclusive) bin.startinclusive = true\n\t\telse if (bc.stopinclusive) bin.stopinclusive = true\n\t}\n\n\tconst start = bc.use_as == 'bins' || bin.start\n\tconst stop = bc.use_as == 'bins' || bin.stop\n\n\tlet label_offset = 0\n\tif ('label_offset' in bc) {\n\t\tbc.label_offset_ignored = 'bin_size' in bc && bc.bin_size < bc.label_offset\n\t\tif (!bc.label_offset_ignored) label_offset = bc.label_offset\n\t} else if (bc.bin_size === 1 && bc.termtype == 'integer') {\n\t\tlabel_offset = 1\n\t}\n\n\t// one side-unbounded bins\n\t// label will be \">v\" or \"<v\"\n\tif (bin.startunbounded) {\n\t\tconst oper = bin.stopinclusive ? '\u2264' : '<' // \\u2264\n\t\tconst v1 = valueConversion\n\t\t\t? convertUnits(stop, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t: bc.binLabelFormatter(stop) //bin.startinclusive && label_offset ? stop - label_offset : stop)\n\t\treturn oper + v1\n\t}\n\t// a data value may coincide with the last bin's start\n\tif (bin.stopunbounded || start === stop) {\n\t\tconst oper = bin.startinclusive /*|| label_offset*/ ? '\u2265' : '>' // \\u2265\n\t\tconst v0 = valueConversion\n\t\t\t? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t: bc.binLabelFormatter(start) //bin.startinclusive || start == min ? start : start + label_offset)\n\t\treturn oper + v0\n\t}\n\n\t// two-sided bins\n\tif (label_offset && bin.startinclusive && !bin.stopinclusive) {\n\t\tif (Number.isInteger(bc.bin_size) && Math.abs(start - stop) === label_offset) {\n\t\t\t// make a simpler label when the range simply spans the bin_size\n\t\t\treturn (\n\t\t\t\t'' +\n\t\t\t\t(valueConversion\n\t\t\t\t\t? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t\t\t: bc.binLabelFormatter(start))\n\t\t\t)\n\t\t} else {\n\t\t\tconst v0 = valueConversion\n\t\t\t\t? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t\t: bc.binLabelFormatter(start)\n\t\t\tconst v1 = valueConversion\n\t\t\t\t? convertUnits(\n\t\t\t\t\t\tstop - label_offset,\n\t\t\t\t\t\tvalueConversion.fromUnit,\n\t\t\t\t\t\tvalueConversion.toUnit,\n\t\t\t\t\t\tvalueConversion.scaleFactor,\n\t\t\t\t\t\ttrue\n\t\t\t\t  )\n\t\t\t\t: bc.binLabelFormatter(stop - label_offset)\n\t\t\t// ensure that last two bin labels make sense (the last is stopunbounded)\n\t\t\treturn +v0 >= +v1 ? v0.toString() : v0 + ' to ' + v1\n\t\t}\n\t} else {\n\t\t// stop_inclusive || label_offset == 0\n\t\tconst oper0 = bin.startinclusive ? '' : '>'\n\t\tconst oper1 = bin.stopinclusive ? '' : '<'\n\t\tconst v0 = valueConversion\n\t\t\t? convertUnits(start, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t: Number.isInteger(start)\n\t\t\t? start\n\t\t\t: bc.binLabelFormatter(start)\n\t\tconst v1 = valueConversion\n\t\t\t? convertUnits(stop, valueConversion.fromUnit, valueConversion.toUnit, valueConversion.scaleFactor, true)\n\t\t\t: Number.isInteger(stop)\n\t\t\t? stop\n\t\t\t: bc.binLabelFormatter(stop)\n\t\t// after rounding the bin labels, the bin start may equal the last bin stop as derived from actual data\n\t\tif (+v0 >= +v1) {\n\t\t\tconst oper = bin.startinclusive ? '\u2265' : '>' // \\u2265\n\t\t\treturn oper + v0\n\t\t} else {\n\t\t\treturn oper0 + v0 + ' to ' + oper1 + v1\n\t\t}\n\t}\n}\n\n// get bin range equation from bin label and bin properties\nexport function get_bin_range_equation(bin, binconfig) {\n\tconst x = '<span style=\"font-family:Times;font-style:italic;\">x</span>'\n\tlet range_eq\n\t// should always use computed (not user-customized) bin label to determine bin range text\n\tconst copy = structuredClone(bin)\n\tcopy.label = '' // mutate only the copy, and not the original bin argument\n\tconst bin_label = get_bin_label(copy, binconfig, undefined)\n\tif (bin.startunbounded || bin.stopunbounded) {\n\t\t// first or last bins, e.g. x \u2264 14 and x > 16\n\t\trange_eq = x + ' ' + bin_label\n\t} else if (bin.startinclusive) {\n\t\t// bins with startinclusive, e.g. 14 \u2264 x < 16\n\t\trange_eq = bin_label.replace('to <', '\u2264 ' + x + ' <')\n\t} else if (bin.stopinclusive) {\n\t\t// bins with stopinclusive, e.g. 14 < x \u2264 16\n\t\trange_eq = bin_label.replace('>', '').replace('to', '< ' + x + ' \u2264')\n\t}\n\treturn range_eq\n}\n\nexport function target_percentiles(binconfig) {\n\tconst percentiles: any[] = []\n\tconst f = binconfig.first_bin\n\tif (f && isStrictNumeric(f.start_percentile)) percentiles.push(f.start_percentile)\n\tif (f && isStrictNumeric(f.stop_percentile)) percentiles.push(f.stop_percentile)\n\tconst l = binconfig.last_bin\n\tif (l && isStrictNumeric(l.start_percentile)) percentiles.push(l.start_percentile)\n\tif (l && isStrictNumeric(l.stop_percentile)) percentiles.push(l.stop_percentile)\n\treturn percentiles\n}\n"],
+  "mappings": 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+  "names": ["k2c"]
+}