@sjcrh/proteinpaint-client 2.196.0 → 2.198.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (957) hide show
  1. package/dist/2dmaf-R3PFZNRN.js +1373 -0
  2. package/dist/AIProjectAdmin-DM3KG6SR.js +958 -0
  3. package/dist/AppHeader-6DZQ6YZX.js +835 -0
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  5. package/dist/CorrelationVolcano-U5UMJNH5.js +619 -0
  6. package/dist/DE-AXNYWIQK.js +95 -0
  7. package/dist/DEinput-JH6YY6LS.js +301 -0
  8. package/dist/DifferentialAnalysis-25P4CGIY.js +242 -0
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  10. package/dist/Disco-NVMLF3BK.js +3392 -0
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  857. /package/dist/{matrix-LVJSHXDM.js.map → matrix-IQR5SRMK.js.map} +0 -0
  858. /package/dist/{matrix-S5QQV4JU.js.map → matrix.cells-5C57NWOY.js.map} +0 -0
  859. /package/dist/{matrix.cells-JUTRYPG4.js.map → matrix.config-2DQXAN2E.js.map} +0 -0
  860. /package/dist/{matrix.config-ZTWWYNIZ.js.map → matrix.data-ADCGF5H6.js.map} +0 -0
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  865. /package/dist/{matrix.legend-6XVQ67AC.js.map → matrix.renderers-5BGVRR3M.js.map} +0 -0
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  880. /package/dist/{plot.barplot-IQTYHNFE.js.map → plot.barplot-JEPRZSCU.js.map} +0 -0
  881. /package/dist/{plot.boxplot-2RMTO7AS.js.map → plot.boxplot-GNFW42VM.js.map} +0 -0
  882. /package/dist/{plot.brainImaging-DLUHAHHG.js.map → plot.brainImaging-5ACNSD45.js.map} +0 -0
  883. /package/dist/{plot.disco-WK6GDLNF.js.map → plot.disco-Q2V2KKIH.js.map} +0 -0
  884. /package/dist/{plot.dzi-3V3FWE7U.js.map → plot.dzi-KVT6S7K7.js.map} +0 -0
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  889. /package/dist/{profileForms-RS4GEZZV.js.map → profileForms-VXV2JLXU.js.map} +0 -0
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  891. /package/dist/{proteinView-NPKJAQAI.js.map → proteinView-7KN532D3.js.map} +0 -0
  892. /package/dist/{profilePlot-3DLME3NH.js.map → qualitative-MLRVLIAU.js.map} +0 -0
  893. /package/dist/{radar2-EX7YBNMT.js.map → radar2-WM2ZBOH3.js.map} +0 -0
  894. /package/dist/{radarFacility2-WU5O6O77.js.map → radarFacility2-3SBR2JJ3.js.map} +0 -0
  895. /package/dist/{qualitative-S45RXXRJ.js.map → regression-WMRPQJW2.js.map} +0 -0
  896. /package/dist/{regression-7MCOYJVD.js.map → regression.inputs-VWZKSYNY.js.map} +0 -0
  897. /package/dist/{regression.inputs-QHSWJ23R.js.map → regression.inputs.term-OWE6GWHM.js.map} +0 -0
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  901. /package/dist/{regression.spec-YIIY2AZA.js.map → regression.spec-DU3UTDCJ.js.map} +0 -0
  902. /package/dist/{regression.results-YKPOTPCC.js.map → render-N5FOF247.js.map} +0 -0
  903. /package/dist/{report-JEJFCWUU.js.map → report-DW3OHB67.js.map} +0 -0
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  907. /package/dist/{samplematrix-LCGHK2EK.js.map → samplematrix-6DAWCXQ3.js.map} +0 -0
  908. /package/dist/{sc-3OE2G4BU.js.map → sc-53LNOB7N.js.map} +0 -0
  909. /package/dist/{scatter-AGVUDTTU.js.map → scatter-DKYSS4DL.js.map} +0 -0
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  927. /package/dist/{summarizeMutationCnv-IUYRVLZG.js.map → summarizeMutationCnv-7AYEMHAI.js.map} +0 -0
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  953. /package/dist/{violin-C26FW5WK.js.map → violin-2YGXTBDS.js.map} +0 -0
  954. /package/dist/{violin.integration.spec-QQ43XWHQ.js.map → violin.integration.spec-YWNHVAGS.js.map} +0 -0
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  957. /package/dist/{vocabulary-3G525O5V.js.map → vocabulary-2INCVPYJ.js.map} +0 -0
@@ -1,514 +0,0 @@
1
- import {
2
- colorDelta,
3
- getInterpolatedDomainRange,
4
- removeOutliers
5
- } from "./chunk-WY2PGUVX.js";
6
- import {
7
- copyMerge
8
- } from "./chunk-M3J4MINX.js";
9
- import {
10
- dtcnv
11
- } from "./chunk-7KRS7L4U.js";
12
- import {
13
- Blues_default,
14
- Reds_default
15
- } from "./chunk-TJYRBEBK.js";
16
- import {
17
- axisBottom,
18
- axisLeft,
19
- axisRight,
20
- axisTop
21
- } from "./chunk-LOZEKOES.js";
22
- import {
23
- linear
24
- } from "./chunk-SOTB4FRE.js";
25
- import {
26
- roundValueAuto
27
- } from "./chunk-TLT4YIG3.js";
28
- import {
29
- __export
30
- } from "./chunk-HFNDKYVF.js";
31
-
32
- // plots/matrix/matrix.layout.js
33
- var matrix_layout_exports = {};
34
- __export(matrix_layout_exports, {
35
- getMaxGrpLabelWidth: () => getMaxGrpLabelWidth,
36
- setAutoDimensions: () => setAutoDimensions,
37
- setLabelsAndScales: () => setLabelsAndScales,
38
- setLayout: () => setLayout
39
- });
40
- var MINCOLWSPACED = 7;
41
- function setAutoDimensions(xOffset) {
42
- const m = this.state.config.settings.matrix;
43
- if (!this.autoDimensions) this.autoDimensions = /* @__PURE__ */ new Set();
44
- if (!m.colw) this.autoDimensions.add("colw");
45
- else this.autoDimensions.delete("colw");
46
- if (!m.rowh) this.autoDimensions.add("rowh");
47
- else this.autoDimensions.delete("rowh");
48
- const s = this.settings.matrix;
49
- this.computedSettings = {
50
- useCanvas: this.sampleOrder.length > m.svgCanvasSwitch
51
- };
52
- if (s.availContentWidth) {
53
- this.availContentWidth = s.availContentWidth;
54
- } else {
55
- let boundingWidth = this.dom.contentNode.getBoundingClientRect().width;
56
- if (boundingWidth < 600) {
57
- boundingWidth = window.document.body.clientWidth;
58
- }
59
- const maxGrpLabelWidth = this.getMaxGrpLabelWidth();
60
- const padding = Math.max(65, maxGrpLabelWidth);
61
- const hcw = this.state.config.settings.hierCluster?.xDendrogramHeight || 0;
62
- this.availContentWidth = boundingWidth - padding - s.margin.right - xOffset - hcw;
63
- }
64
- let colwSpaced, colwNoSpace;
65
- if (this.autoDimensions.has("colw")) {
66
- const totalColgspace = s.colgspace * Math.max(0, this.visibleSampleGrps.size - 1);
67
- const tentativeGaps = this.sampleOrder.length * s.colspace + totalColgspace;
68
- const spacedColw = (this.availContentWidth - tentativeGaps) / this.sampleOrder.length;
69
- const constrainedMINCOLWSPACED = Math.max(s.colwMin, Math.min(MINCOLWSPACED, s.colwMax));
70
- colwSpaced = Math.max(constrainedMINCOLWSPACED, Math.min(spacedColw, s.colwMax));
71
- const noSpacedColw = (this.availContentWidth - totalColgspace) / this.sampleOrder.length;
72
- colwNoSpace = Math.max(s.colwMin, Math.min(noSpacedColw, s.colwMax));
73
- this.computedSettings.colw = colwSpaced <= MINCOLWSPACED ? colwNoSpace : colwSpaced;
74
- this.computedSettings.zoomMin = s.colwMin / this.computedSettings.colw;
75
- this.computedSettings.zoomMax = s.colwMax / this.computedSettings.colw;
76
- } else {
77
- colwSpaced = m.colw;
78
- colNoSpace = m.colw;
79
- this.computedSettings.colw = m.colw;
80
- this.computedSettings.zoomMin = s.colwMin / m.colw;
81
- this.computedSettings.zoomMax = s.colwMax / m.colw;
82
- }
83
- const { colw } = this.computedSettings;
84
- this.computedSettings.colspace = colw === colwNoSpace && colwSpaced < colwNoSpace || colw * s.zoomLevel < MINCOLWSPACED ? 0 : s.colspace;
85
- const hch = this.state.config.settings.hierCluster?.yDendrogramHeight || 0;
86
- const availHeight = s.availContentHeight || screen.availHeight - hch;
87
- this.computedSettings.clusterRowh = Math.min(
88
- s.rowhMax,
89
- Math.max(s.rowhMin, Math.floor(availHeight / this.numClusterTerms))
90
- );
91
- copyMerge(this.settings.matrix, this.computedSettings);
92
- }
93
- function getMaxGrpLabelWidth() {
94
- const s = this.settings.matrix;
95
- const g = this.dom.svg.append("g").attr("opacity", 0.01);
96
- let maxWidth = 0;
97
- for (const grp of this.termGroups) {
98
- const grpLabel = !grp.name ? "" : grp.name.length <= s.termGrpLabelMaxChars ? grp.name : grp.name.slice(0, s.termGrpLabelMaxChars) + "\u2026";
99
- const text = g.append("text").text(grpLabel).attr("font-size", 12);
100
- const box = text.node().getBBox();
101
- if (maxWidth < box.width) maxWidth = box.width;
102
- }
103
- g.remove();
104
- return maxWidth;
105
- }
106
- function setLabelsAndScales() {
107
- const s = this.settings.matrix;
108
- this.cnvValues = [];
109
- const ht = s.transpose ? s.colw : s.rowh;
110
- const grpTotals = {};
111
- const processedLabels = { sampleGrpByName: {}, termGrpByName: {} };
112
- let totalHtAdjustments = 0;
113
- for (const t of this.termOrder) {
114
- const countedSamples = /* @__PURE__ */ new Set();
115
- t.counts = { samples: 0, hits: 0 };
116
- const renderedContinuousVs = [];
117
- let hasMixedValues = false;
118
- if (t.tw.term.type == "termCollection") {
119
- t.counts.minval = 0;
120
- t.counts.maxval = 0;
121
- }
122
- t.counts.subGroupCounts = {};
123
- for (const group of this.sampleGroups) {
124
- t.counts.subGroupCounts[group.name] = {
125
- samplesTotal: 0,
126
- // number of counted (not Blank or WT) samples
127
- classes: {}
128
- // number of each class
129
- };
130
- if (t.tw.term.type == "geneVariant") {
131
- t.counts.subGroupCounts[group.name].samplesNotTested = 0;
132
- }
133
- }
134
- if (!processedLabels.termGrpByName[t.grp.name || ""]) {
135
- const name = t.grp.name || "";
136
- t.grp.label = name.length <= s.termGrpLabelMaxChars ? name : name.slice(0, s.termGrpLabelMaxChars) + "\u2026";
137
- processedLabels.termGrpByName[name] = t.grp.label;
138
- }
139
- for (const sample of this.sampleOrder) {
140
- if (countedSamples.has(sample.row.sample)) continue;
141
- const name = sample.grp.name || "";
142
- if (!(name in processedLabels.sampleGrpByName)) {
143
- sample.grp.label = name.length <= s.sampleGrpLabelMaxChars ? name : name.slice(0, s.sampleGrpLabelMaxChars) + "\u2026";
144
- if (this.config.divideBy) sample.grp.label += ` (${sample.grp.lst.length})`;
145
- processedLabels.sampleGrpByName[name] = sample.grp.label;
146
- }
147
- const sampleName = sample.row._ref_.label || "";
148
- sample.label = sampleName.length <= s.collabelmaxchars ? sampleName : sampleName.slice(0, s.collabelmaxchars) + "\u2026";
149
- const anno = sample.row[t.tw.$id];
150
- if (!anno) continue;
151
- if (t.tw.term.type == "termCollection" && anno.hasMixedValues) {
152
- hasMixedValues = true;
153
- }
154
- if (t.tw.term.type == "termCollection" && anno.values) {
155
- for (const val of anno.values) {
156
- const pct = val.value;
157
- if (pct > 0) {
158
- const cumSum = val.pre_val_sum + pct;
159
- if (!("maxval" in t.counts) || t.counts.maxval < cumSum) {
160
- t.counts.maxval = cumSum;
161
- }
162
- } else if (pct < 0) {
163
- const cumSum = val.pre_val_sum + pct;
164
- if (!("minval" in t.counts) || t.counts.minval > cumSum) {
165
- t.counts.minval = cumSum;
166
- }
167
- }
168
- }
169
- }
170
- const { filteredValues, countedValues, renderedValues } = this.classifyValues(
171
- anno,
172
- t.tw,
173
- t.grp,
174
- this.settings.matrix,
175
- sample.row
176
- );
177
- anno.filteredValues = filteredValues;
178
- anno.countedValues = countedValues;
179
- anno.renderedValues = renderedValues;
180
- if (anno.countedValues?.length) {
181
- t.counts.samples += 1;
182
- t.counts.hits += anno.countedValues.length;
183
- if (t.tw.q?.mode == "continuous") {
184
- const v = anno.value;
185
- if (!t.tw.term.values?.[v]?.uncomputable) {
186
- if (!("minval" in t.counts) || t.counts.minval > v) t.counts.minval = v;
187
- if (!("maxval" in t.counts) || t.counts.maxval < v) t.counts.maxval = v;
188
- }
189
- }
190
- if (t.tw.term.type == "geneVariant" && anno.values) {
191
- for (const val of anno.values) {
192
- if (val.dt == dtcnv && "value" in val && !s.ignoreCnvValues) {
193
- const v = val.value;
194
- this.cnvValues.push(v);
195
- }
196
- }
197
- }
198
- }
199
- if (t.tw.q?.mode == "continuous" && renderedValues?.length && t.grp.type != "hierCluster") {
200
- renderedContinuousVs.push(
201
- t.tw.term.valueConversion ? t.tw.term.valueConversion.scaleFactor * (renderedValues[0].value || renderedValues[0]) : renderedValues[0].value || renderedValues[0]
202
- );
203
- }
204
- const subGroup = t.counts.subGroupCounts?.[sample.grp.name];
205
- const countedValuesNoSkip = anno.filteredValues.filter((v) => {
206
- if (t.tw.term.type == "geneVariant") {
207
- if (v.class == "WT" || v.class == "Blank") return false;
208
- }
209
- return true;
210
- });
211
- if (countedValuesNoSkip.length) {
212
- if (t.tw.term.type == "geneVariant") {
213
- let sampleCounted = false;
214
- for (const countedValue of countedValuesNoSkip) {
215
- if (s.geneVariantCountSamplesSkipMclass.includes(countedValue.class)) {
216
- if (!subGroup.notTestedClasses) subGroup.notTestedClasses = {};
217
- if (!(countedValue.class in subGroup.notTestedClasses)) subGroup.notTestedClasses[countedValue.class] = 1;
218
- else subGroup.notTestedClasses[countedValue.class] += 1;
219
- } else if (!(countedValue.class in subGroup.classes)) {
220
- if (!sampleCounted) {
221
- subGroup.samplesTotal += 1;
222
- sampleCounted = true;
223
- }
224
- subGroup.classes[countedValue.class] = 1;
225
- } else {
226
- if (!sampleCounted) {
227
- subGroup.samplesTotal += 1;
228
- sampleCounted = true;
229
- }
230
- subGroup.classes[countedValue.class] += 1;
231
- }
232
- }
233
- } else {
234
- subGroup.samplesTotal += 1;
235
- for (const countedValue of countedValuesNoSkip) {
236
- if (!(countedValue in subGroup.classes)) subGroup.classes[countedValue] = 1;
237
- else subGroup.classes[countedValue] += 1;
238
- }
239
- }
240
- }
241
- if (anno.filteredValues?.length && t.tw.term.type == "geneVariant") {
242
- const notTested = anno.filteredValues.every((v) => v.class == "Blank");
243
- if (notTested) {
244
- subGroup.samplesNotTested += 1;
245
- }
246
- }
247
- }
248
- if (t.tw.label) {
249
- t.label = t.tw.label;
250
- } else if (t.grp.type == "hierCluster") {
251
- t.label = t.tw.term.gene || t.tw.term.name;
252
- } else {
253
- t.label = t.tw.term.name;
254
- }
255
- if (t.label.length > s.rowlabelmaxchars) t.label = t.label.slice(0, s.rowlabelmaxchars - 1) + "\u2026";
256
- const termGroupName = this.config?.settings.hierCluster?.termGroupName;
257
- if (s.samplecount4gene && t.tw.term.type.startsWith("gene") && (!termGroupName || t.grp.name !== termGroupName)) {
258
- const count = s.samplecount4gene === "abs" ? t.counts.samples : (100 * t.counts.samples / this.sampleOrder.length).toFixed(1) + "%";
259
- t.label = `${t.label} (${count})`;
260
- }
261
- const twSpecificSettings = this.config.settings.matrix.twSpecificSettings;
262
- if (!twSpecificSettings[t.tw.$id]) twSpecificSettings[t.tw.$id] = {};
263
- const twSettings = twSpecificSettings[t.tw.$id];
264
- if (t.grp.type !== "hierCluster" && t.tw.q?.mode == "continuous") {
265
- const vc = t.tw.term.valueConversion;
266
- if (vc) {
267
- t.counts.minval *= vc.scaleFactor;
268
- t.counts.maxval *= vc.scaleFactor;
269
- }
270
- if (renderedContinuousVs.length && t.tw.q.convert2ZScore) {
271
- const mean = renderedContinuousVs.reduce((acc, val) => acc + val, 0) / renderedContinuousVs.length;
272
- const std = Math.sqrt(
273
- renderedContinuousVs.reduce((acc, val) => acc + Math.pow(val - mean, 2), 0) / renderedContinuousVs.length
274
- );
275
- t.mean = mean;
276
- t.std = std;
277
- t.counts.minval = (t.counts.minval - mean) / std;
278
- t.counts.maxval = (t.counts.maxval - mean) / std;
279
- }
280
- if (!twSettings.contBarH) twSettings.contBarH = t.tw.term.type == "termCollection" ? 150 : s.barh;
281
- if (!("gap" in twSettings)) twSettings.contBarGap = 4;
282
- const barh = twSettings.contBarH;
283
- if (t.tw.term.type == "termCollection") {
284
- if (!("minval" in t.counts)) t.counts.minval = 0;
285
- if (!("maxval" in t.counts)) t.counts.maxval = 0;
286
- }
287
- const absMin = Math.abs(t.counts.minval);
288
- const rangeSpansZero = t.counts.minval < 0 && t.counts.maxval > 0;
289
- const ratio = t.counts.minval >= 0 ? 1 : t.counts.maxval / (absMin + t.counts.maxval);
290
- t.counts.posMaxHt = ratio * barh;
291
- const tickValues = [t.counts.maxval, t.counts.minval];
292
- t.scales = {
293
- tickValues,
294
- full: linear().domain(tickValues).range([1, barh])
295
- };
296
- if (t.counts.maxval >= 0) {
297
- const domainMin = rangeSpansZero ? 0 : t.counts.minval;
298
- t.scales.pos = linear().domain([domainMin, t.counts.maxval]).range([1, t.counts.posMaxHt]);
299
- }
300
- if (t.counts.minval < 0) {
301
- const domainMax = rangeSpansZero ? 0 : t.counts.maxval;
302
- t.scales.neg = linear().domain([domainMax, t.counts.minval]).range([1, barh - t.counts.posMaxHt]);
303
- }
304
- }
305
- t.totalHtAdjustments = totalHtAdjustments;
306
- t.rowHt = t.grp.type == "hierCluster" ? s.clusterRowh : twSettings.contBarH && t.tw.q?.mode == "continuous" ? twSettings.contBarH + 2 * twSettings.contBarGap : ht;
307
- const adjustment = t.rowHt - ht - (t.grp.type == "hierCluster" ? s.rowspace : 0);
308
- totalHtAdjustments += adjustment;
309
- t.cumulativeAdjustment = totalHtAdjustments;
310
- if (!(t.visibleGrpIndex in grpTotals)) grpTotals[t.visibleGrpIndex] = { htAdjustment: 0 };
311
- grpTotals[t.visibleGrpIndex].htAdjustment += adjustment;
312
- t.grpTotals = grpTotals[t.visibleGrpIndex];
313
- }
314
- let cnvLegendDomainRange;
315
- if (this.cnvValues.length) {
316
- if (s.cnvValues.cutoffMode == "fixed") {
317
- this.cnvValues = this.cnvValues.filter((v) => v >= s.cnvValues.min && v <= s.cnvValues.max).sort((a, b) => a - b);
318
- if (this.cnvValues[0] != s.cnvValues.min) this.cnvValues.unshift(s.cnvValues.min);
319
- if (this.cnvValues[this.cnvValues.length - 1] != s.cnvValues.max) this.cnvValues.push(s.cnvValues.max);
320
- } else if (s.cnvValues.cutoffMode == "percentile" || s.cnvValues.cutoffMode == "auto") {
321
- let maxPercentile = s.cnvValues.cutoffMode == "auto" ? s.cnvValues.defaultPercentile : s.cnvValues.percentile;
322
- maxPercentile = maxPercentile / 100;
323
- const minPercentile = roundValueAuto(1 - maxPercentile);
324
- this.cnvValues = removeOutliers(this.cnvValues, { minPercentile, maxPercentile, baseValue: 0 });
325
- } else throw new Error(`Invalid cnvValues cutoffMode: ${s.cnvValues.cutoffMode}`);
326
- const minLoss = this.cnvValues[0] <= 0 ? this.cnvValues[0] : void 0;
327
- const maxGain = this.cnvValues[this.cnvValues.length - 1] >= 0 ? this.cnvValues[this.cnvValues.length - 1] : void 0;
328
- let maxLoss, minGain, absMax;
329
- for (const n of this.cnvValues) {
330
- if (n < 0) maxLoss = n;
331
- if (!minGain && n > 0) {
332
- minGain = n;
333
- break;
334
- }
335
- }
336
- for (const t of this.termOrder) {
337
- if (t.tw.term.type == "geneVariant") {
338
- if (!cnvLegendDomainRange) {
339
- const loss0color = Blues_default(0);
340
- const gain0color = Reds_default(0);
341
- const colorDiff = colorDelta(loss0color, gain0color);
342
- if (minLoss !== void 0 && maxGain !== void 0 && colorDiff > 25)
343
- console.warn(
344
- `CNV loss and gain do not have the same middle color for value=0'${loss0color}' vs '${gain0color}', color difference=${colorDiff}`
345
- );
346
- absMax = minLoss !== void 0 && maxGain !== void 0 ? Math.max(Math.abs(minLoss), maxGain) : minLoss !== void 0 ? Math.abs(minLoss) : maxGain;
347
- cnvLegendDomainRange = getInterpolatedDomainRange({
348
- absMin: 0,
349
- absMax,
350
- totalNumSteps: 10,
351
- negInterpolator: minLoss !== void 0 && Blues_default,
352
- posInterpolator: maxGain !== void 0 && Reds_default,
353
- // force this middleColor to white, knowing that interpolateBlues and interpolateReds,
354
- // as hardcoded above and below, share similar white colors for their minimum abs values
355
- middleColor: "white"
356
- });
357
- }
358
- t.scales = {
359
- loss: Blues_default,
360
- gain: Reds_default,
361
- maxLoss,
362
- maxGain,
363
- minLoss,
364
- minGain,
365
- absMax,
366
- legend: cnvLegendDomainRange
367
- };
368
- }
369
- }
370
- }
371
- }
372
- function setLayout() {
373
- const s = this.settings.matrix;
374
- const [col, row] = !s.transpose ? ["sample", "term"] : ["term", "sample"];
375
- const [_t_, _b_] = s.collabelpos == "top" ? ["", "Grp"] : ["Grp", ""];
376
- const [_l_, _r_] = s.rowlabelpos == "left" ? ["", "Grp"] : ["Grp", ""];
377
- const top = col + _t_;
378
- const btm = col + _b_;
379
- const left = row + _l_;
380
- const right = row + _r_;
381
- this.samples = this.sampleOrder;
382
- this.sampleGrps = this.sampleOrder.filter((s2) => s2.index === 0);
383
- this.terms = this.termOrder;
384
- this.termGrps = this.termOrder.filter((t) => t.index === 0);
385
- const layout = {};
386
- const sides = { top, btm, left, right };
387
- for (const direction in sides) {
388
- const d = sides[direction];
389
- const Direction = direction[0].toUpperCase() + direction.slice(1);
390
- layout[direction] = {
391
- prefix: d,
392
- data: this[`${d}s`],
393
- offset: s[`${d}LabelOffset`],
394
- box: this.dom[`${d}LabelG`],
395
- key: this[`${d}Key`],
396
- label: this[`${d}Label`],
397
- render: this[`render${Direction}Label`],
398
- isGroup: sides[direction].includes("Grp")
399
- };
400
- }
401
- const yOffset = layout.top.offset + s.margin.top + s.scrollHeight;
402
- const xOffset = layout.left.offset + s.margin.left;
403
- this.setAutoDimensions(xOffset);
404
- this.setLabelsAndScales();
405
- const colw = Math.max(s.colwMin, Math.min(s.colwMax, s.colw * s.zoomLevel));
406
- const dx = colw + s.colspace;
407
- const nx = this[`${col}s`].length;
408
- const dy = s.rowh + s.rowspace;
409
- const ny = this[`${row}s`].length;
410
- const mainwByColDimensions = nx * (colw + s.colspace) + this[`${col}Grps`].length * s.colgspace + (this[`${col}s`].slice(-1)[0]?.totalHtAdjustments || 0);
411
- const mainw = Math.min(mainwByColDimensions, this.availContentWidth);
412
- const lastRow = this[`${row}s`].slice(-1)[0];
413
- const mainh = ny * dy + (this[`${row}Grps`].length - 1) * s.rowgspace + (lastRow?.cumulativeAdjustment || 0);
414
- const colLabelFontSize = Math.min(
415
- Math.max(colw + s.colspace - 2 * s.collabelpad - s.colspace, s.minLabelFontSize),
416
- s.maxLabelFontSize
417
- );
418
- const topFontSize = _t_ == "Grp" ? s.grpLabelFontSize : colLabelFontSize;
419
- layout.top.attr = {
420
- boxTransform: `translate(${xOffset}, ${yOffset - s.collabelgap})`,
421
- adjustBoxTransform: (dx2) => layout.top.box.attr("transform", `translate(${xOffset + dx2}, ${yOffset - s.collabelgap})`),
422
- labelTransform: "rotate(-90)",
423
- labelAnchor: "start",
424
- labelGY: 0,
425
- labelGTransform: this[`col${_t_}LabelGTransform`],
426
- fontSize: topFontSize,
427
- textpos: { coord: "y", factor: -1 },
428
- axisFxn: axisTop
429
- };
430
- if (layout.top.prefix == "sample")
431
- layout.top.display = s.sampleLabelsToggle !== "hide" && colw >= s.minLabelFontSize ? "" : "none";
432
- const btmFontSize = _b_ == "Grp" ? s.grpLabelFontSize : colLabelFontSize;
433
- layout.btm.attr = {
434
- boxTransform: `translate(${xOffset}, ${yOffset + mainh + s.collabelgap})`,
435
- adjustBoxTransform: (dx2) => layout.btm.box.attr("transform", `translate(${xOffset + dx2}, ${yOffset + mainh + s.collabelgap})`),
436
- labelTransform: "rotate(-90)",
437
- labelAnchor: "end",
438
- labelGY: 0,
439
- labelGTransform: this[`col${_b_}LabelGTransform`],
440
- fontSize: btmFontSize,
441
- textpos: { coord: "y", factor: 1 },
442
- axisFxn: axisBottom
443
- };
444
- if (layout.btm.prefix == "sample")
445
- layout.btm.display = s.sampleLabelsToggle !== "hide" && colw >= s.minLabelFontSize ? "" : "none";
446
- const leftFontSize = _l_ == "Grp" ? s.grpLabelFontSize : Math.max(s.rowh + s.rowspace - 2 * s.rowlabelpad - s.rowspace, s.minLabelFontSize);
447
- layout.left.attr = {
448
- boxTransform: `translate(${xOffset - s.rowlabelgap}, ${yOffset})`,
449
- labelTransform: "",
450
- labelAnchor: "end",
451
- labelGX: 0,
452
- labelGTransform: this[`row${_l_}LabelGTransform`],
453
- fontSize: leftFontSize,
454
- textpos: { coord: "x", factor: -1 },
455
- axisFxn: axisLeft
456
- };
457
- const rtFontSize = _r_ == "Grp" ? s.grpLabelFontSize : Math.max(s.rowh + s.rowspace - 2 * s.rowlabelpad, s.minLabelFontSize);
458
- layout.right.attr = {
459
- boxTransform: `translate(${xOffset + mainw + s.rowlabelgap}, ${yOffset})`,
460
- labelTransform: "",
461
- labelAnchor: "start",
462
- labelGX: 0,
463
- labelGTransform: this[`row${_r_}LabelGTransform`],
464
- fontSize: rtFontSize,
465
- textpos: { coord: "x", factor: 1 },
466
- axisFxn: axisRight
467
- };
468
- this.dom.sampleLabelsPG.attr("clip-path", s.transpose ? "" : `url(#${this.seriesClipId})`);
469
- this.dom.termLabelsPG.attr("clip-path", s.transpose ? `url(#${this.seriesClipId})` : "");
470
- this.layout = layout;
471
- if (!s.zoomCenterPct) {
472
- s.zoomCenterPct = 0.5;
473
- s.zoomIndex = Math.round(s.zoomCenterPct * mainw / dx);
474
- s.zoomGrpIndex = this.sampleOrder[s.zoomIndex]?.grpIndex || 0;
475
- }
476
- const zoomCenter = s.zoomCenterPct * mainw;
477
- const centerCellX = s.zoomIndex * dx + s.zoomGrpIndex * s.colgspace;
478
- const zoomedMainW = Math.max(0, nx * dx + (this[`${col}Grps`].length - 1) * s.colgspace);
479
- const seriesXoffset = s.zoomLevel <= 1 && mainw >= zoomedMainW ? 0 : Math.max(zoomCenter - centerCellX, mainw - zoomedMainW);
480
- const imgW = (s.imgWMax > zoomedMainW ? zoomedMainW : s.imgWMax) - 1e-7;
481
- const halfImgW = 0.5 * imgW;
482
- const unwantedRightOvershoot = Math.max(0, centerCellX + halfImgW - zoomedMainW);
483
- const imgLeftMin = Math.max(0, centerCellX - Math.min(halfImgW, imgW) - unwantedRightOvershoot);
484
- const xMin = s.zoomLevel <= 1 && mainw >= zoomedMainW ? 0 : imgLeftMin;
485
- const xMax = imgW + xMin;
486
- this.dimensions = {
487
- xMin,
488
- xMax,
489
- dx,
490
- dy,
491
- xOffset,
492
- yOffset,
493
- mainw,
494
- mainh,
495
- colw,
496
- zoomedMainW,
497
- seriesXoffset: seriesXoffset > 0 ? 0 : seriesXoffset,
498
- maxMainW: Math.max(mainwByColDimensions, this.availContentWidth),
499
- imgW,
500
- // recompute the resolvable "pixel width", in case the pixel ratio changes
501
- // when moving the browser window to a different monitor,
502
- // will be used to sharpen canvas shapes that are smaller than this pixel width
503
- pxw: 1 / window.devicePixelRatio
504
- };
505
- }
506
-
507
- export {
508
- setAutoDimensions,
509
- getMaxGrpLabelWidth,
510
- setLabelsAndScales,
511
- setLayout,
512
- matrix_layout_exports
513
- };
514
- //# sourceMappingURL=chunk-4O6H4ZHL.js.map