@sjcrh/proteinpaint-client 2.196.0 → 2.198.0

package/dist/brainImaging-BGP6VRFV.js

@@ -1,423 +0,0 @@
-import {
-  controlsInit,
-  renderTable,
-  svgLegend,
-  term0_term2_defaultQ
-} from "./chunk-WY2PGUVX.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-MBUQ34CF.js";
-import {
-  Menu
-} from "./chunk-HYOEWQ5P.js";
-import "./chunk-HBW42TDT.js";
-import "./chunk-LQJMCE7G.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-IIT367QZ.js";
-import "./chunk-RZGEKL77.js";
-import "./chunk-OVSKJROY.js";
-import "./chunk-A3URBFXN.js";
-import {
-  dofetch3
-} from "./chunk-LYVLF6HO.js";
-import "./chunk-7IYJZZQI.js";
-import {
-  copyMerge,
-  getCompInit
-} from "./chunk-M3J4MINX.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-I73KUUYG.js";
-import "./chunk-NNFAUP2I.js";
-import "./chunk-7KRS7L4U.js";
-import "./chunk-BKPDYW5T.js";
-import "./chunk-JNITUVXP.js";
-import "./chunk-TJYRBEBK.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-VQZ2Z5YU.js";
-import {
-  linear
-} from "./chunk-SOTB4FRE.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-KYBIQBXE.js";
-import "./chunk-I6Y4O3RR.js";
-import {
-  rgb
-} from "./chunk-OMR2DT66.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HFNDKYVF.js";
-
-// plots/brainImaging.js
-var BrainImaging = class _BrainImaging {
-  static type = "brainImaging";
-  constructor(opts) {
-    this.opts = opts;
-    this.type = _BrainImaging.type;
-    setInteractivity(this);
-  }
-  async init(appState) {
-    const state = this.getState(appState);
-    const holder = this.opts.holder;
-    if (this.opts.header)
-      this.opts.header.style("padding-left", "7px").style("color", "rgb(85, 85, 85)").html(`Brain Imaging: ${state.config.queryKey}/${state.config.selectedSampleFileNames.join(" ")}`);
-    const controlsHolder = holder.append("div").style("display", "inline-block").style("vertical-align", "top");
-    const rightDiv = holder.append("div").style("display", "inline-block").style("vertical-align", "top");
-    const headerHolder = rightDiv.append("div").style("display", "inline-block").style("vertical-align", "top").style("padding", "10px");
-    const contentHolder = rightDiv.append("div").style("vertical-align", "top");
-    const table = contentHolder.append("table").style("border-collapse", "collapse");
-    const headerTr = table.append("tr");
-    const contentTr = table.append("tr").style("background-color", "black");
-    const tdL = contentTr.append("td");
-    const tdF = contentTr.append("td");
-    const tdT = contentTr.append("td");
-    const legendHolder = contentHolder.append("svg").style("width", "100%").on("mouseup", this.legendLabelMouseup);
-    const legendMenu = new Menu({ padding: "0px" });
-    this.dom = {
-      headerHolder,
-      contentHolder,
-      headerTr,
-      tdL,
-      tdF,
-      tdT,
-      legendHolder,
-      legendMenu
-    };
-    this.addSliders(state.config.settings.brainImaging);
-    const configInputsOptions = this.getConfigInputsOptions(state);
-    this.components = {
-      controls: await controlsInit({
-        app: this.app,
-        id: this.id,
-        holder: controlsHolder,
-        inputs: configInputsOptions
-      })
-    };
-    this.components.controls.on("downloadClick.brainImaging", () => {
-      const urls = [];
-      for (const key in this.imagesData)
-        for (const category in this.imagesData[key].dataUrls) {
-          const dataUrl = this.imagesData[key].dataUrls[category].url;
-          urls.push(dataUrl);
-        }
-      this.downloadImage(urls);
-    });
-    this.legendRenderer = svgLegend({ holder: this.dom.legendHolder });
-  }
-  addSliders(settings) {
-    const tr = this.dom.headerTr;
-    let td = tr.append("td");
-    td.append("label").attr("for", "saggital").text("Sagittal:");
-    this.dom.saggitalSlider = td.append("input").attr("id", "saggital").attr("type", "range").attr("min", 0).attr("max", 192).attr("value", settings.brainImageL).on("change", (e) => {
-      this.editBrainImage("brainImageL", e.target.value);
-    });
-    this.dom.saggitalInput = td.append("input").attr("type", "number").attr("min", 0).attr("max", 192).attr("value", settings.brainImageL).on("change", (e) => {
-      this.editBrainImage("brainImageL", e.target.value);
-    }).style("vertical-align", "top");
-    td = tr.append("td");
-    td.append("label").attr("for", "coronal").text("Coronal:");
-    this.dom.coronalSlider = td.append("input").attr("type", "range").attr("min", 0).attr("max", 228).attr("value", settings.brainImageF).on("change", (e) => {
-      this.editBrainImage("brainImageF", e.target.value);
-    });
-    this.dom.coronalInput = td.append("input").attr("type", "number").attr("min", 0).attr("max", 192).attr("value", settings.brainImageF).on("change", (e) => {
-      this.editBrainImage("brainImageF", e.target.value);
-    }).style("vertical-align", "top");
-    td = tr.append("td");
-    td.append("label").attr("for", "axial").text("Axial:");
-    this.dom.axialSlider = td.append("input").attr("id", "axial").attr("type", "range").attr("min", 0).attr("max", 192).attr("value", settings.brainImageT).on("change", (e) => {
-      this.editBrainImage("brainImageT", e.target.value);
-    });
-    this.dom.axialInput = td.append("input").attr("type", "number").attr("min", 0).attr("max", 192).attr("value", settings.brainImageT).on("change", (e) => {
-      this.editBrainImage("brainImageT", e.target.value);
-    });
-  }
-  editBrainImage(key, value) {
-    if (!value) return;
-    const settings = { [key]: Number(value) };
-    this.app.dispatch({ type: "plot_edit", id: this.id, config: { settings: { brainImaging: settings } } });
-  }
-  downloadImage(dataUrls) {
-    for (const dataUrl of dataUrls) {
-      const downloadImgName = "brainImaging";
-      const a = document.createElement("a");
-      document.body.appendChild(a);
-      a.addEventListener(
-        "click",
-        () => {
-          a.download = downloadImgName + ".png";
-          a.href = dataUrl;
-          document.body.removeChild(a);
-        },
-        false
-      );
-      a.click();
-    }
-  }
-  getConfigInputsOptions(state) {
-    if (state.config.selectedSampleFileNames.length == 1) return [];
-    const mandatoryConfigInputOptions = [
-      {
-        label: "Divide by",
-        type: "term",
-        chartType: "brainImaging",
-        configKey: "divideByTW",
-        title: "Categories to divide by",
-        usecase: { target: "brainImaging", detail: "term0" },
-        vocabApi: this.app.vocabApi,
-        numericEditMenuVersion: ["discrete"],
-        defaultQ4fillTW: term0_term2_defaultQ
-      },
-      {
-        label: "Color by",
-        type: "term",
-        chartType: "brainImaging",
-        configKey: "overlayTW",
-        title: "Categories to color the samples",
-        usecase: { target: "brainImaging", detail: "term2" },
-        vocabApi: this.app.vocabApi,
-        numericEditMenuVersion: ["discrete"],
-        defaultQ4fillTW: term0_term2_defaultQ
-      }
-    ];
-    return mandatoryConfigInputOptions;
-  }
-  getState(appState) {
-    const config = appState.plots.find((p) => p.id === this.id);
-    return {
-      config,
-      dslabel: appState.vocab.dslabel,
-      genome: appState.vocab.genome,
-      RefNIdata: appState.termdbConfig.queries.NIdata[config.queryKey]
-    };
-  }
-  async main() {
-    this.config = structuredClone(this.state.config);
-    this.settings = this.state.config.settings.brainImaging;
-    this.dom.saggitalSlider.property("value", this.settings.brainImageL);
-    this.dom.saggitalInput.property("value", this.settings.brainImageL);
-    this.dom.coronalSlider.property("value", this.settings.brainImageF);
-    this.dom.coronalInput.property("value", this.settings.brainImageF);
-    this.dom.axialSlider.property("value", this.settings.brainImageT);
-    this.dom.axialInput.property("value", this.settings.brainImageT);
-    const data = await Promise.all([
-      this.requestImage("l", this.settings.brainImageL),
-      this.requestImage("f", this.settings.brainImageF),
-      this.requestImage("t", this.settings.brainImageT)
-    ]);
-    this.imagesData = {
-      brainImageL: { dataUrls: {}, td: this.dom.tdL, data: data[0] },
-      brainImageF: { dataUrls: {}, td: this.dom.tdF, data: data[1] },
-      brainImageT: { dataUrls: {}, td: this.dom.tdT, data: data[2] }
-    };
-    for (const img of Object.values(this.imagesData)) this.renderImages(img);
-    this.renderLegend();
-  }
-  async requestImage(key, value) {
-    const body = {
-      genome: this.state.genome,
-      dslabel: this.state.dslabel,
-      refKey: this.state.config.queryKey,
-      [key]: value,
-      selectedSampleFileNames: this.state.config.selectedSampleFileNames,
-      divideByTW: this.state.config.divideByTW,
-      overlayTW: this.state.config.overlayTW,
-      legendFilter: this.state.config.legendFilter
-    };
-    return await dofetch3("brainImaging", { body });
-  }
-  renderImages({ data, td, dataUrls }) {
-    this.legendValues = data.legend;
-    if (data.error) throw data.error;
-    for (const [termV, result] of Object.entries(data.brainImage)) {
-      dataUrls[termV] = result;
-    }
-    td.selectAll("*").remove();
-    for (const [termV, result] of Object.entries(dataUrls)) {
-      if (this.state.config.divideByTW)
-        td.append("div").attr("class", "pp-chart-title").style("text-align", "center").text(`${termV} (n=${result.catNum})`).style("font-weight", "600").style("color", "white").style("font-size", "24px").style("margin-bottom", "5px").style("margin-top", "5px").style("display", "block");
-      td.append("div").append("img").attr("src", result.url);
-    }
-  }
-  renderLegend() {
-    const legendItems = [];
-    for (const [label, v] of Object.entries(this.legendValues)) {
-      const scale = linear(["white", v.color], [0, v.maxLength]).clamp(true);
-      legendItems.push({
-        text: label == "default" ? "Combined Intensity" : label,
-        width: 100,
-        scale,
-        colors: ["white", v.color],
-        domain: [0, v.maxLength],
-        key: label,
-        crossedOut: v.crossedOut
-      });
-    }
-    this.legendItems = legendItems;
-    const legendRendererData = [
-      {
-        items: legendItems
-      }
-    ];
-    this.legendRenderer(legendRendererData, {
-      settings: {
-        fontsize: 16,
-        iconh: 14,
-        iconw: 14,
-        dimensions: {
-          xOffset: 0
-        }
-      }
-    });
-  }
-};
-function makeChartBtnMenu(holder, chartsInstance) {
-  chartsInstance.dom.tip.clear();
-  const menuDiv = holder.append("div");
-  if (chartsInstance.state.termdbConfig.queries.NIdata) {
-    for (const [refKey, ref] of Object.entries(chartsInstance.state.termdbConfig.queries.NIdata)) {
-      const refDiv = menuDiv.append("div");
-      const refOption = refDiv.append("div").attr("class", "sja_menuoption sja_sharp_border").text(refKey).on("click", async () => {
-        refOption.attr("class", "sja_menuoption_not_interactive");
-        refOption.on("click", null);
-        const body = {
-          genome: chartsInstance.opts.vocab.genome,
-          dslabel: chartsInstance.opts.vocab.dslabel,
-          refKey,
-          samplesOnly: true
-        };
-        const result = await dofetch3("brainImagingSamples", { body });
-        const samples = result.samples;
-        const [rows, columns] = await getTableData(chartsInstance, samples, chartsInstance.state, refKey);
-        const applybt = {
-          text: "APPLY",
-          class: "sjpp_apply_btn sja_filter_tag_btn",
-          callback: (indexes) => {
-            chartsInstance.dom.tip.hide();
-            const selectedSampleFileNames = indexes.map((i) => samples[i].sample + ".nii");
-            const config = {
-              chartType: "brainImaging",
-              queryKey: refKey,
-              settings: {
-                brainImaging: {
-                  brainImageL: ref.parameters.l,
-                  brainImageF: ref.parameters.f,
-                  brainImageT: ref.parameters.t
-                }
-              },
-              selectedSampleFileNames
-            };
-            chartsInstance.app.dispatch({
-              type: "plot_create",
-              config
-            });
-          }
-        };
-        renderTable({
-          rows,
-          columns,
-          resize: true,
-          singleMode: false,
-          div: refDiv.append("div"),
-          maxHeight: "40vh",
-          buttons: [applybt]
-        });
-      });
-    }
-  }
-}
-var brainImaging = getCompInit(BrainImaging);
-var componentInit = brainImaging;
-async function getPlotConfig(opts) {
-  const settings = {
-    brainImaging: { brainImageL: 76, brainImageF: 116, brainImageT: 80 }
-  };
-  const config = { chartType: "brainImaging", settings, hidePlotFilter: true };
-  return copyMerge(config, opts);
-}
-async function getTableData(self, samples, state, refKey) {
-  const rows = [];
-  for (const sample of samples) {
-    const row = [{ value: sample.sample }];
-    for (const c of state.termdbConfig.queries.NIdata[refKey].sampleColumns || []) {
-      row.push({ value: sample[c.termid] });
-    }
-    rows.push(row);
-  }
-  const columns = [{ label: "Sample" }];
-  for (const c of state.termdbConfig.queries.NIdata[refKey].sampleColumns || []) {
-    columns.push({
-      label: (await self.app.vocabApi.getterm(c.termid)).name
-    });
-  }
-  return [rows, columns];
-}
-function setInteractivity(self) {
-  self.legendLabelMouseup = (event) => {
-    const targetData = event.target.__data__;
-    if (!targetData || targetData.key == "default") return;
-    const legendMenu = self.dom.legendMenu.clear();
-    const legendMenuDiv = legendMenu.d.append("div");
-    const legendFilter = self.state.config.legendFilter ? [...self.state.config.legendFilter] : [];
-    const legendFilterIndex = legendFilter.indexOf(targetData.key);
-    if (legendFilterIndex !== -1 || legendFilter.length + 1 !== self.legendItems.length) {
-      legendMenuDiv.append("div").attr("class", "sja_menuoption sja_sharp_border").text(legendFilterIndex == -1 ? "Hide" : "Show").on("click", () => {
-        legendMenu.hide();
-        if (legendFilterIndex == -1) legendFilter.push(targetData.key);
-        else legendFilter.splice(legendFilterIndex, 1);
-        self.app.dispatch({
-          type: "plot_edit",
-          id: self.id,
-          config: { legendFilter }
-        });
-      });
-    }
-    legendMenuDiv.append("div").attr("class", "sja_menuoption sja_sharp_border").text("Show only").on("click", () => {
-      legendMenu.hide();
-      const legendFilter2 = [];
-      for (const legendCat of self.legendItems) {
-        if (legendCat.key !== targetData.key) legendFilter2.push(legendCat.key);
-      }
-      self.app.dispatch({
-        type: "plot_edit",
-        id: self.id,
-        config: { legendFilter: legendFilter2 }
-      });
-    });
-    legendMenuDiv.append("div").attr("class", "sja_menuoption sja_sharp_border").text("Show all").on("click", () => {
-      legendMenu.hide();
-      self.app.dispatch({
-        type: "plot_edit",
-        id: self.id,
-        config: { legendFilter: [] }
-      });
-    });
-    if (self.state.config.overlayTW.term.type != "geneVariant") {
-      let color = self.state.config.overlayTW?.term?.values?.[targetData.key]?.color || "red";
-      color = rgb(color).formatHex();
-      legendMenuDiv.append("div").attr("class", "sja_sharp_border").style("padding", "0px 10px").text("Color:").append("input").attr("type", "color").attr("value", color).on("change", (e) => {
-        self.changeColor(targetData.key, e.target.value);
-      });
-    }
-    legendMenu.showunder(event.target);
-  };
-  self.changeColor = async function(key, color) {
-    const tw = self.config.overlayTW;
-    if (!(tw.term.type == "geneVariant" && tw.q.type == "values") && tw.term.values[key])
-      tw.term.values[key].color = color;
-    else {
-      if (!tw.term.values) tw.term.values = {};
-      if (!tw.term.values[key]) tw.term.values[key] = {};
-      tw.term.values[key].color = color;
-    }
-    await self.app.dispatch({
-      type: "plot_edit",
-      id: self.id,
-      config: { overlayTW: tw }
-    });
-  };
-}
-export {
-  brainImaging,
-  componentInit,
-  getPlotConfig,
-  makeChartBtnMenu
-};
-//# sourceMappingURL=brainImaging-BGP6VRFV.js.map

package/dist/brainRegions-AAN7LM2Y.js

@@ -1,221 +0,0 @@
-import {
-  loadBrainAssets,
-  renderBrainSvg
-} from "./chunk-VVDFRJVN.js";
-import {
-  PlotBase,
-  addGeneSearchbox
-} from "./chunk-WY2PGUVX.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-MBUQ34CF.js";
-import {
-  Menu
-} from "./chunk-HYOEWQ5P.js";
-import "./chunk-HBW42TDT.js";
-import "./chunk-LQJMCE7G.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-IIT367QZ.js";
-import "./chunk-RZGEKL77.js";
-import "./chunk-OVSKJROY.js";
-import "./chunk-A3URBFXN.js";
-import {
-  dofetch3
-} from "./chunk-LYVLF6HO.js";
-import "./chunk-7IYJZZQI.js";
-import {
-  copyMerge,
-  getCompInit
-} from "./chunk-M3J4MINX.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-I73KUUYG.js";
-import "./chunk-NNFAUP2I.js";
-import "./chunk-7KRS7L4U.js";
-import "./chunk-BKPDYW5T.js";
-import "./chunk-JNITUVXP.js";
-import "./chunk-TJYRBEBK.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-VQZ2Z5YU.js";
-import {
-  linear
-} from "./chunk-SOTB4FRE.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-KYBIQBXE.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-OMR2DT66.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HFNDKYVF.js";
-
-// plots/brainRegions.ts
-var defaultConfig = {
-  chartType: "brainRegions"
-};
-var P_VALUE_THRESHOLD = 0.05;
-var NONSIG_COLOR = "#ccc";
-var BRAIN_RENDER_W = 520;
-var gradientSeq = 0;
-var BrainRegions = class _BrainRegions extends PlotBase {
-  static {
-    this.type = "brainRegions";
-  }
-  constructor(opts, api) {
-    super(opts, api);
-    this.type = _BrainRegions.type;
-  }
-  async init() {
-    const holder = this.opts.holder.append("div").style("padding", "10px");
-    this.dom = {
-      holder,
-      body: holder.append("div"),
-      tip: new Menu({ padding: "" }),
-      header: this.opts.header
-    };
-    if (this.dom.header) this.dom.header.html("Brain Regional Proteome");
-  }
-  getState(appState) {
-    const config = appState.plots.find((p) => p.id === this.id);
-    if (!config) throw `No plot with id='${this.id}' found`;
-    return { config };
-  }
-  async main() {
-    const gene = this.state.config?.gene;
-    if (!gene) throw new Error("brainRegions: gene is missing");
-    if (this.dom.header) this.dom.header.text(`Brain Regional Proteome: ${gene}`);
-    const body = {
-      genome: this.app.opts.state.vocab.genome,
-      dslabel: this.app.opts.state.vocab.dslabel,
-      gene
-    };
-    const data = await dofetch3("termdb/brainRegions", { body });
-    if (data.error) throw data.error;
-    this.dom.body.selectAll("*").remove();
-    const description = this.app.vocabApi.termdbConfig?.queries?.proteome?.brainRegions?.description;
-    if (description) {
-      this.dom.body.append("div").style("font-size", "0.85em").style("color", "#555").style("margin-bottom", "10px").style("line-height", "1.4").style("max-width", "600px").style("white-space", "normal").style("overflow-wrap", "break-word").text(description);
-    }
-    const isoformIds = Object.keys(data.isoforms);
-    if (isoformIds.length === 0) {
-      this.dom.body.append("div").style("padding", "20px").style("color", "#666").text(`No brain-region data found for gene "${gene}".`);
-      return;
-    }
-    const brainAssets = await loadBrainAssets(data.svgUrl, Object.keys(data.regions));
-    const controlRow = this.dom.body.append("div").style("margin-bottom", "15px");
-    controlRow.append("span").style("font-weight", "bold").text("Isoform: ");
-    const selectedIsoform = isoformIds[0];
-    if (isoformIds.length > 1) {
-      const sel = controlRow.append("select").style("margin-left", "5px").style("padding", "3px 6px").on("change", () => {
-        this.renderBrains(data, sel.node().value, brainAssets);
-      });
-      sel.selectAll("option").data(isoformIds).enter().append("option").attr("value", (d) => d).text((d) => `${data.isoforms[d].gene_name} \u2014 ${d}`);
-    } else {
-      controlRow.append("span").style("margin-left", "5px").text(`${data.isoforms[selectedIsoform].gene_name} \u2014 ${selectedIsoform}`);
-    }
-    this.renderBrains(data, selectedIsoform, brainAssets);
-  }
-  renderBrains(data, selectedIsoform, brainAssets) {
-    const existing = this.dom.body.select(".sjpp-brain-regions-container");
-    if (!existing.empty()) existing.remove();
-    const container = this.dom.body.append("div").attr("class", "sjpp-brain-regions-container").style("display", "flex").style("gap", "40px").style("flex-wrap", "wrap");
-    const isoformData = data.isoforms[selectedIsoform];
-    if (!isoformData) return;
-    const allFCs = [];
-    for (const disease of data.diseases) {
-      const regionData = isoformData.data[disease] || {};
-      for (const entry of Object.values(regionData)) {
-        if (entry.p_value < P_VALUE_THRESHOLD) {
-          allFCs.push(entry.fold_change);
-        }
-      }
-    }
-    const maxAbsFC = allFCs.length > 0 ? Math.max(...allFCs.map((v) => Math.abs(v))) : 1;
-    const colorScale = linear().domain([-maxAbsFC, 0, maxAbsFC]).range(["#2166ac", "#f7f7f7", "#b2182b"]).clamp(true);
-    for (const disease of data.diseases) {
-      const regionData = isoformData.data[disease] || {};
-      renderBrainSvg({
-        holder: container,
-        width: BRAIN_RENDER_W,
-        templateUrl: data.templateUrl,
-        assets: brainAssets,
-        regions: data.regions,
-        title: disease,
-        tip: this.dom.tip,
-        fillByRegion: (code) => {
-          const entry = regionData[code];
-          if (entry && entry.p_value < P_VALUE_THRESHOLD) return colorScale(entry.fold_change);
-          return NONSIG_COLOR;
-        },
-        tooltipByRegion: (code, label) => {
-          const entry = regionData[code];
-          if (!entry) return `${label} (${code})
-No data`;
-          const fc = entry.fold_change.toFixed(4);
-          const p = entry.p_value >= 1e-4 ? entry.p_value.toFixed(4) : entry.p_value.toExponential(3);
-          return `${label} (${code})
-log\u2082 fold change: ${fc}
-p-value: ${p}`;
-        }
-      });
-    }
-    this.renderLegend(container, colorScale, maxAbsFC);
-  }
-  renderLegend(container, colorScale, maxAbsFC) {
-    const legendDiv = container.append("div").style("display", "flex").style("flex-direction", "column").style("justify-content", "center").style("padding", "10px");
-    legendDiv.append("div").style("font-weight", "bold").style("font-size", "13px").style("margin-bottom", "8px").text("Fold Change (log\u2082)");
-    const legendWidth = 20;
-    const legendHeight = 200;
-    const svg = legendDiv.append("svg").attr("width", legendWidth + 60).attr("height", legendHeight + 30);
-    const defs = svg.append("defs");
-    const gradientId = `brain-fc-gradient-${gradientSeq++}`;
-    const gradient = defs.append("linearGradient").attr("id", gradientId).attr("x1", "0").attr("y1", "0").attr("x2", "0").attr("y2", "1");
-    const steps = 10;
-    for (let i = 0; i <= steps; i++) {
-      const t = i / steps;
-      const val = maxAbsFC * (1 - 2 * t);
-      gradient.append("stop").attr("offset", `${t * 100}%`).attr("stop-color", colorScale(val));
-    }
-    svg.append("rect").attr("x", 0).attr("y", 10).attr("width", legendWidth).attr("height", legendHeight).style("fill", `url(#${gradientId})`).attr("stroke", "#999");
-    const legendScale = linear().domain([maxAbsFC, -maxAbsFC]).range([10, legendHeight + 10]);
-    const ticks = [-maxAbsFC, -maxAbsFC / 2, 0, maxAbsFC / 2, maxAbsFC];
-    for (const tick of ticks) {
-      const y = legendScale(tick);
-      svg.append("line").attr("x1", legendWidth).attr("y1", y).attr("x2", legendWidth + 5).attr("y2", y).attr("stroke", "#666");
-      svg.append("text").attr("x", legendWidth + 8).attr("y", y).attr("dominant-baseline", "central").attr("font-size", "10px").text(tick.toFixed(2));
-    }
-    legendDiv.append("div").style("margin-top", "10px").style("font-size", "12px").style("color", "#666").html(
-      `<span style="display:inline-block;width:14px;height:14px;background:${NONSIG_COLOR};border:1px solid #999;vertical-align:middle;margin-right:4px"></span> Not significant (p \u2265 0.05)`
-    );
-  }
-};
-var componentInit = getCompInit(BrainRegions);
-async function getPlotConfig(opts) {
-  const config = structuredClone(defaultConfig);
-  if (!opts.gene) throw new Error("brainRegions requires opts.gene");
-  return copyMerge(config, opts);
-}
-function makeChartBtnMenu(holder, chartsInstance) {
-  const row = holder.append("div").style("padding", "5px");
-  row.append("span").style("font-weight", "bold").text("Enter a gene name:");
-  const geneSearch = addGeneSearchbox({
-    row,
-    genome: chartsInstance.app.opts.genome,
-    tip: new Menu({ padding: "0px" }),
-    searchOnly: "gene",
-    callback: async () => {
-      if (!geneSearch.geneSymbol) throw new Error("A valid gene selection is required");
-      chartsInstance.dom.tip.hide();
-      chartsInstance.app.dispatch({
-        type: "plot_create",
-        config: {
-          chartType: "brainRegions",
-          gene: geneSearch.geneSymbol
-        }
-      });
-    }
-  });
-}
-export {
-  componentInit,
-  getPlotConfig,
-  makeChartBtnMenu
-};
-//# sourceMappingURL=brainRegions-AAN7LM2Y.js.map