@sjcrh/proteinpaint-client 2.185.0 → 2.186.0

package/dist/singlecell-VQJ2252L.js

@@ -1,84 +0,0 @@
-import {
-  appInit
-} from "./chunk-K7XWZSQA.js";
-import "./chunk-JMJW3ERE.js";
-import "./chunk-SKMFMGCD.js";
-import "./chunk-HZETQJGD.js";
-import "./chunk-YWUVCXFS.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-3QBZ2Y77.js";
-import "./chunk-HYOEWQ5P.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-G6O3URDN.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-KWM6B3NL.js";
-import "./chunk-UCLS2SVB.js";
-import "./chunk-6ZCHECOT.js";
-import {
-  copyMerge
-} from "./chunk-MVTCBVSX.js";
-import "./chunk-2K5DSRBJ.js";
-import "./chunk-X4NI4JLQ.js";
-import "./chunk-L4QG7XZE.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-UWYCEYML.js";
-import "./chunk-7UHUOC6F.js";
-import "./chunk-ZYY54HBU.js";
-import "./chunk-EGWVYY7K.js";
-import "./chunk-AMYSEKPF.js";
-import "./chunk-TV74I3Y5.js";
-import "./chunk-KSGA62R2.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-TOU7EVFQ.js";
-import "./chunk-OAWQ6LOO.js";
-import "./chunk-KYBIQBXE.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-OMR2DT66.js";
-import "./chunk-HFNDKYVF.js";
-
-// gdc/singlecell.ts
-var gdcGenome = "hg38";
-var gdcDslabel = "GDC";
-async function init(arg, holder, genomes) {
-  const plotAppApi = await appInit({
-    holder,
-    state: {
-      genome: gdcGenome,
-      dslabel: gdcDslabel,
-      termfilter: { filter0: arg.filter0 },
-      plots: arg.state?.plots || [{ chartType: "singleCellPlot" }]
-    },
-    genome: genomes[gdcGenome],
-    app: copyMerge({}, arg.opts?.app || {}),
-    opts: {
-      singleCellPlot: arg.opts?.singleCellPlot || {}
-    }
-  });
-  const api = {
-    update: async (updateArg) => {
-      if (!plotAppApi) return;
-      if ("filter0" in updateArg) {
-        plotAppApi.dispatch({
-          type: "app_refresh",
-          subactions: [
-            {
-              type: "filter_replace",
-              filter0: updateArg.filter0
-            }
-          ]
-        });
-      } else {
-        plotAppApi.dispatch({
-          type: "plot_edit",
-          id: plotAppApi.getState().plots[0].id,
-          config: updateArg
-        });
-      }
-    }
-  };
-  return api;
-}
-export {
-  init
-};
-//# sourceMappingURL=singlecell-VQJ2252L.js.map

package/dist/snp-ALMKZKL2.js

@@ -1,36 +0,0 @@
-import {
-  SearchHandler
-} from "./chunk-LMGE54CQ.js";
-import "./chunk-YWUVCXFS.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-3QBZ2Y77.js";
-import "./chunk-HYOEWQ5P.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-G6O3URDN.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-KWM6B3NL.js";
-import "./chunk-UCLS2SVB.js";
-import "./chunk-6ZCHECOT.js";
-import "./chunk-MVTCBVSX.js";
-import "./chunk-2K5DSRBJ.js";
-import "./chunk-X4NI4JLQ.js";
-import "./chunk-L4QG7XZE.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-UWYCEYML.js";
-import "./chunk-7UHUOC6F.js";
-import "./chunk-ZYY54HBU.js";
-import "./chunk-EGWVYY7K.js";
-import "./chunk-AMYSEKPF.js";
-import "./chunk-TV74I3Y5.js";
-import "./chunk-KSGA62R2.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-TOU7EVFQ.js";
-import "./chunk-OAWQ6LOO.js";
-import "./chunk-KYBIQBXE.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-OMR2DT66.js";
-import "./chunk-HFNDKYVF.js";
-export {
-  SearchHandler
-};
-//# sourceMappingURL=snp-ALMKZKL2.js.map

package/dist/snp.unit.spec-GJQBAHGQ.js

@@ -1,174 +0,0 @@
-import {
-  SearchHandler
-} from "./chunk-LMGE54CQ.js";
-import {
-  require_tape
-} from "./chunk-QWOE5YTB.js";
-import "./chunk-YWUVCXFS.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-3QBZ2Y77.js";
-import "./chunk-HYOEWQ5P.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-G6O3URDN.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-KWM6B3NL.js";
-import "./chunk-UCLS2SVB.js";
-import "./chunk-6ZCHECOT.js";
-import "./chunk-MVTCBVSX.js";
-import "./chunk-2K5DSRBJ.js";
-import "./chunk-X4NI4JLQ.js";
-import "./chunk-L4QG7XZE.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-UWYCEYML.js";
-import "./chunk-7UHUOC6F.js";
-import "./chunk-ZYY54HBU.js";
-import "./chunk-EGWVYY7K.js";
-import "./chunk-AMYSEKPF.js";
-import "./chunk-TV74I3Y5.js";
-import "./chunk-KSGA62R2.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-TOU7EVFQ.js";
-import "./chunk-OAWQ6LOO.js";
-import "./chunk-KYBIQBXE.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-OMR2DT66.js";
-import {
-  __toESM
-} from "./chunk-HFNDKYVF.js";
-
-// termdb/handlers/test/snp.unit.spec.ts
-var import_tape = __toESM(require_tape(), 1);
-function getGeneSearchWithCoordinates(overrides = {}) {
-  return {
-    chr: "chr17",
-    ref: "G",
-    alt: "A",
-    fromWhat: "rs1234567",
-    start: 7670618,
-    stop: 7670619,
-    ...overrides
-  };
-}
-function getGeneSearchWithPos(overrides = {}) {
-  return {
-    chr: "chr13",
-    ref: "T",
-    alt: "C",
-    fromWhat: "BRCA2:c.68_69delAA",
-    pos: 32889612,
-    ...overrides
-  };
-}
-(0, import_tape.default)("\n", function(test) {
-  test.comment("-***- termdb/handlers/snp -***-");
-  test.end();
-});
-(0, import_tape.default)("selectSnp() should throw when required fields are missing", async (test) => {
-  const handler = new SearchHandler();
-  handler.callback = () => {
-  };
-  try {
-    await handler.selectSnp({ chr: "chr1", ref: "A", alt: "T" });
-    test.fail("Should throw when fromWhat is missing");
-  } catch (e) {
-    test.match(String(e), /missing chr, ref, alt, or fromWhat/, "Should throw when fromWhat is missing");
-  }
-  try {
-    await handler.selectSnp({ ref: "A", alt: "T", fromWhat: "rs123" });
-    test.fail("Should throw when chr is missing");
-  } catch (e) {
-    test.match(String(e), /missing chr, ref, alt, or fromWhat/, "Should throw when chr is missing");
-  }
-  try {
-    await handler.selectSnp({ chr: "chr1", alt: "T", fromWhat: "rs123" });
-    test.fail("Should throw when ref is missing");
-  } catch (e) {
-    test.match(String(e), /missing chr, ref, alt, or fromWhat/, "Should throw when ref is missing");
-  }
-  try {
-    await handler.selectSnp({ chr: "chr1", ref: "A", fromWhat: "rs123" });
-    test.fail("Should throw when alt is missing");
-  } catch (e) {
-    test.match(String(e), /missing chr, ref, alt, or fromWhat/, "Should throw when alt is missing");
-  }
-  test.end();
-});
-(0, import_tape.default)("selectSnp() should throw when coordinate is missing", async (test) => {
-  const handler = new SearchHandler();
-  handler.callback = () => {
-  };
-  try {
-    await handler.selectSnp({
-      chr: "chr17",
-      ref: "G",
-      alt: "A",
-      fromWhat: "rs1234567"
-    });
-    test.fail("Should throw when coordinate is missing");
-  } catch (e) {
-    test.match(String(e), /missing coordinate of snp/, "Should throw expected message for missing coordinate");
-  }
-  test.end();
-});
-(0, import_tape.default)("selectSnp() should call callback with term object using start/stop coordinates", async (test) => {
-  const handler = new SearchHandler();
-  let selected;
-  handler.callback = (t) => {
-    selected = t;
-  };
-  const geneSearch = getGeneSearchWithCoordinates();
-  await handler.selectSnp(geneSearch);
-  test.equal(selected?.id, "rs1234567", "Should set id to fromWhat");
-  test.equal(selected?.chr, "chr17", "Should pass chr");
-  test.equal(selected?.start, 7670618, "Should pass start coordinate");
-  test.equal(selected?.stop, 7670619, "Should pass stop coordinate");
-  test.equal(selected?.ref, "G", "Should pass ref");
-  test.deepEqual(selected?.alt, ["A"], "Should convert alt string to array");
-  test.equal(selected?.name, "rs1234567", "Should set name to fromWhat");
-  test.equal(selected?.type, "snp", "Should set type to snp");
-  test.end();
-});
-(0, import_tape.default)("selectSnp() should call callback with term object using pos coordinate", async (test) => {
-  const handler = new SearchHandler();
-  let selected;
-  handler.callback = (t) => {
-    selected = t;
-  };
-  const geneSearch = getGeneSearchWithPos();
-  await handler.selectSnp(geneSearch);
-  test.equal(selected?.id, "BRCA2:c.68_69delAA", "Should set id to fromWhat");
-  test.equal(selected?.chr, "chr13", "Should pass chr");
-  test.equal(selected?.start, 32889611, "Should convert pos-1 to start");
-  test.equal(selected?.stop, 32889612, "Should set stop to pos");
-  test.equal(selected?.ref, "T", "Should pass ref");
-  test.deepEqual(selected?.alt, ["C"], "Should convert alt string to array");
-  test.equal(selected?.name, "BRCA2:c.68_69delAA", "Should set name to fromWhat");
-  test.equal(selected?.type, "snp", "Should set type to snp");
-  test.end();
-});
-(0, import_tape.default)("selectSnp() should handle alt as array when already in array format", async (test) => {
-  const handler = new SearchHandler();
-  let selected;
-  handler.callback = (t) => {
-    selected = t;
-  };
-  const geneSearch = getGeneSearchWithCoordinates({ alt: ["A", "T"] });
-  await handler.selectSnp(geneSearch);
-  test.deepEqual(selected?.alt, ["A", "T"], "Should preserve alt array when provided as array");
-  test.end();
-});
-(0, import_tape.default)("selectSnp() should handle various chromosome formats", async (test) => {
-  const handler = new SearchHandler();
-  const chromosomes = ["chr1", "chr22", "chrX", "chrY", "chrM"];
-  for (const chr of chromosomes) {
-    let selected;
-    handler.callback = (t) => {
-      selected = t;
-    };
-    const geneSearch = getGeneSearchWithCoordinates({ chr });
-    await handler.selectSnp(geneSearch);
-    test.equal(selected?.chr, chr, `Should handle chromosome ${chr}`);
-  }
-  test.end();
-});
-//# sourceMappingURL=snp.unit.spec-GJQBAHGQ.js.map

package/dist/snplocus-WCNCMFWZ.js

@@ -1,206 +0,0 @@
-import {
-  makeSnpSelect,
-  mayRestrictAncestry
-} from "./chunk-T5BDYCFO.js";
-import "./chunk-7OYOC7XY.js";
-import {
-  addGeneSearchbox,
-  filterInit,
-  getNormalRoot
-} from "./chunk-YWUVCXFS.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-3QBZ2Y77.js";
-import "./chunk-HYOEWQ5P.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-G6O3URDN.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-KWM6B3NL.js";
-import "./chunk-UCLS2SVB.js";
-import "./chunk-6ZCHECOT.js";
-import "./chunk-MVTCBVSX.js";
-import "./chunk-2K5DSRBJ.js";
-import "./chunk-X4NI4JLQ.js";
-import "./chunk-L4QG7XZE.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-UWYCEYML.js";
-import "./chunk-7UHUOC6F.js";
-import "./chunk-ZYY54HBU.js";
-import "./chunk-EGWVYY7K.js";
-import "./chunk-AMYSEKPF.js";
-import "./chunk-TV74I3Y5.js";
-import "./chunk-KSGA62R2.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-TOU7EVFQ.js";
-import "./chunk-OAWQ6LOO.js";
-import "./chunk-KYBIQBXE.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-OMR2DT66.js";
-import "./chunk-HFNDKYVF.js";
-
-// termsetting/handlers/snplocus.ts
-var term_name = "Variants in a locus";
-function getHandler(self) {
-  return {
-    getPillName() {
-      return self.term.name;
-    },
-    getPillStatus() {
-      if (!self.term || !self.q) return;
-      if (!self.term.snps) throw `Missing term.snps [snplocs.ts getPillStatus()]`;
-      let text = `${self.q.chr}:${self.q.start}-${self.q.stop}, ${self.term.snps.length} variant${self.term.snps.length > 1 ? "s" : ""}`;
-      if (self.term.reachedVariantLimit) {
-        text += '<span style="margin-left: 6px; background:#aaa; font-size:1em;font-style: normal; border-radius: 7px;color:white;padding:0px 5px;">&#9888;<span>';
-      }
-      return { text };
-    },
-    validateQ(data) {
-      validateQ(data);
-    },
-    async showEditMenu(div) {
-      await makeEditMenu(self, div);
-    }
-    /* no need for postMain()
-    cache file contains all samples,
-    variants in a cache file is only determined by locus range and info fields
-    thus no need to regenerate cache file upon subcohort or filter change via pill.main()
-    async postMain() {
-    	if (self.q && self.q.chr) {
-    		await validateInput(self)
-    	}
-    }
-    */
-  };
-}
-async function makeEditMenu(self, div0) {
-  const div = div0.append("div").style("margin", "15px");
-  const select_ancestry = await mayRestrictAncestry(self, div);
-  const coordResult = addGeneSearchbox({
-    genome: self.opts.genomeObj,
-    tip: self.dom.tip2,
-    row: div.append("div").style("margin-top", "20px"),
-    defaultCoord: self.q && self.q.chr ? { chr: self.q.chr, start: self.q.start, stop: self.q.stop } : void 0
-  });
-  div.select(".sja_genesearchinput").style("margin", "0px");
-  div.append("span").style("margin", "5px 0px").style("display", "inline-block").style("opacity", 0.4).style("font-size", ".7em").html(
-    '"Gene": Gene name (e.g. AKT1)</br>"Position": chr:start-stop (e.g. chr1:5000-6000)</br>"dbSNP": dbSNP accession (e.g. rs1042522)'
-  );
-  await mayDisplayVariantFilter(self, self.q?.variant_filter, div);
-  const [input_AFcutoff, select_alleleType, select_geneticModel] = makeSnpSelect(
-    div.append("div").attr("class", "sjpp-snp-select").style("margin-top", "15px"),
-    self,
-    "snplocus"
-  );
-  if (self.usecase.target == "dataDownload") div.select(".sjpp-snp-select").style("display", "none");
-  const btnRow = div.append("div").style("margin-top", "15px");
-  btnRow.append("button").style("margin-top", "15px").text("Submit").on("click", async (event) => {
-    if (!coordResult.chr) return window.alert("Invalid coordinate");
-    event.target.disabled = true;
-    event.target.innerHTML = "Validating input...";
-    if (self.term) {
-    } else {
-      self.term = { id: makeId() };
-    }
-    if (!self.q) self.q = {};
-    self.term.type = "snplocus";
-    self.q.chr = coordResult.chr;
-    self.q.start = coordResult.start;
-    self.q.stop = coordResult.stop;
-    self.term.name = term_name;
-    delete self.term.snps;
-    self.q.variant_filter = getNormalRoot(self.variantFilter.active);
-    await validateInput(self);
-    {
-      const v = Number(input_AFcutoff.property("value"));
-      self.q.AFcutoff = v < 0 || v >= 100 ? 5 : v;
-    }
-    self.q.alleleType = select_alleleType.property("selectedIndex");
-    self.q.geneticModel = select_geneticModel.property("selectedIndex");
-    if (select_ancestry) {
-      self.q.restrictAncestry = select_ancestry.node().options[select_ancestry.property("selectedIndex")].__ancestry_obj;
-    }
-    self.api.runCallback();
-  });
-  btnRow.append("span").style("padding-left", "15px").style("opacity", 0.8).style("font-size", ".8em").text(
-    self.usecase.target == "dataDownload" ? "" : "Variants will be treated individually in separate regression models"
-  );
-}
-async function validateInput(self) {
-  const data = await self.vocabApi.validateSnps(self.q);
-  if (data.error) throw data.error;
-  self.q.cacheid = data.cacheid;
-  self.term.snps = data.snps;
-  self.term.reachedVariantLimit = data.reachedVariantLimit;
-}
-function validateQ(data) {
-  const q = data.q;
-  if (!Number.isFinite(q.AFcutoff)) throw "AFcutoff is not number";
-  if (q.AFcutoff < 0 || q.AFcutoff > 100) throw "AFcutoff is not within 0 to 100";
-  if (![0, 1].includes(q.alleleType)) throw "alleleType value is not one of 0/1";
-  if (![0, 1, 2, 3].includes(q.geneticModel)) throw "geneticModel value is not one of 0/1";
-  if (!q.chr) throw "chr missing";
-  if (!Number.isInteger(q.start)) throw "start coordinate is not integer";
-  if (!Number.isInteger(q.stop)) throw "stop coordinate is not integer";
-  if (q.start < 0) throw "start < 0";
-  if (q.stop <= q.start) throw "stop <= start";
-}
-async function fillTW(tw, vocabApi) {
-  try {
-    validateQ(tw);
-  } catch (e) {
-    throw "snplocus validateQ(): " + e;
-  }
-  if (!tw.term.name) tw.term.name = term_name;
-  if (tw.id == void 0 || tw.id == "") {
-    if (tw.term.id == void 0 || tw.term.id == "") {
-      tw.term.id = makeId();
-    }
-    tw.id = tw.term.id;
-  } else {
-    if (tw.term.id == void 0 || tw.term.id == "") {
-      tw.term.id = tw.id;
-    }
-  }
-  await validateInput({
-    term: tw.term,
-    q: tw.q,
-    vocabApi
-  });
-}
-function makeId() {
-  return "snplocus" + Math.random();
-}
-async function mayDisplayVariantFilter(self, filterInState, holder, callback2) {
-  if (!self.variantFilter) {
-    self.variantFilter = await self.vocabApi.get_variantFilter();
-  }
-  if (!self.variantFilter.terms) {
-    return;
-  }
-  if (!self.variantFilter.opts) throw "variantFilter.opts{} missing";
-  if (!self.variantFilter.filter) throw ".filter missing from variantFilter{}";
-  if (!Array.isArray(self.variantFilter.terms) || self.variantFilter.terms.length == 0)
-    throw "variantFilter.terms[] is not non-empty array";
-  if (filterInState) {
-    self.variantFilter.active = JSON.parse(JSON.stringify(filterInState));
-  } else {
-    self.variantFilter.active = JSON.parse(JSON.stringify(self.variantFilter.filter));
-  }
-  const div = holder.append("div").style("margin-top", "15px");
-  div.append("span").text("VARIANT FILTERS").style("font-size", ".8em").style("opacity", 0.5);
-  const filterBody = div.append("div");
-  filterInit({
-    joinWith: self.variantFilter.opts.joinWith,
-    emptyLabel: "+Variant Filter",
-    holder: filterBody,
-    vocab: { terms: self.variantFilter.terms },
-    callback: async (filter) => {
-      self.variantFilter.active = filter;
-      if (callback2) await callback2();
-    }
-  }).main(self.variantFilter.active);
-}
-export {
-  fillTW,
-  getHandler
-};
-//# sourceMappingURL=snplocus-WCNCMFWZ.js.map

package/dist/spliceevent.a53ss.diagram-4Q4JF4RX.js

@@ -1,149 +0,0 @@
-import {
-  font
-} from "./chunk-YWUVCXFS.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-3QBZ2Y77.js";
-import "./chunk-HYOEWQ5P.js";
-import "./chunk-FN5XPUPH.js";
-import "./chunk-G6O3URDN.js";
-import "./chunk-LSEFWW72.js";
-import "./chunk-KWM6B3NL.js";
-import "./chunk-UCLS2SVB.js";
-import "./chunk-6ZCHECOT.js";
-import "./chunk-MVTCBVSX.js";
-import "./chunk-2K5DSRBJ.js";
-import "./chunk-X4NI4JLQ.js";
-import "./chunk-L4QG7XZE.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-UWYCEYML.js";
-import "./chunk-7UHUOC6F.js";
-import "./chunk-ZYY54HBU.js";
-import "./chunk-EGWVYY7K.js";
-import {
-  IN_frame,
-  exoncolor
-} from "./chunk-AMYSEKPF.js";
-import "./chunk-TV74I3Y5.js";
-import "./chunk-KSGA62R2.js";
-import "./chunk-LOZEKOES.js";
-import "./chunk-TOU7EVFQ.js";
-import "./chunk-OAWQ6LOO.js";
-import "./chunk-KYBIQBXE.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-OMR2DT66.js";
-import "./chunk-HFNDKYVF.js";
-
-// src/spliceevent.a53ss.diagram.js
-var junctionBcolor = "#990000";
-var color_truncateexon = "#00A352";
-function spliceevent_a53ss_diagram_default(arg) {
-  const evt = arg.event;
-  if (!evt) {
-    arg.holder.text(".event missing");
-    return;
-  }
-  if (evt.a5ss == void 0 && evt.a3ss == void 0) {
-    arg.holder.text("not a5ss or a3ss");
-    return;
-  }
-  const exonwidth = 30;
-  const intronwidth = 30;
-  const exonheight = 20;
-  const distfontsize = exonheight - 5;
-  const junctionheight = 20;
-  const xpad = 30;
-  const ypad = 20;
-  const svg = arg.holder.append("svg");
-  const g = svg.append("g").attr("transform", "translate(" + xpad + "," + ypad + ")");
-  const distlabel = evt.sitedist + " nt";
-  let distlabelw;
-  g.append("text").text(distlabel).attr("font-size", distfontsize).attr("font-family", font).each(function() {
-    distlabelw = this.getBBox().width;
-  }).remove();
-  const distlabelpad = 5;
-  let leftinexon = false;
-  let rightinexon = false;
-  let leftinintron = false;
-  let rightinintron = false;
-  if (evt.a5ss) {
-    if (evt.altinexon) leftinexon = true;
-    else leftinintron = true;
-  } else {
-    if (evt.altinexon) rightinexon = true;
-    else rightinintron = true;
-  }
-  let x = 0;
-  let intronstart;
-  let intronstop;
-  g.append("rect").attr("fill", exoncolor).attr("stroke", exoncolor).attr("x", x).attr("y", junctionheight).attr("width", exonwidth).attr("height", exonheight).attr("shape-rendering", "crispEdges");
-  g.append("text").text("e" + (evt.exon5idx + 1)).attr("text-anchor", "middle").attr("x", x + exonwidth / 2).attr("y", junctionheight + exonheight / 2).attr("fill", "white").attr("dominant-baseline", "central").attr("font-size", distfontsize).attr("font-family", font);
-  x += exonwidth;
-  if (leftinexon) {
-    g.append("rect").attr("fill", color_truncateexon).attr("stroke", color_truncateexon).attr("x", x).attr("y", junctionheight).attr("width", distlabelw + distlabelpad * 2).attr("height", exonheight).attr("shape-rendering", "crispEdges");
-    g.append("text").text(distlabel).attr("text-anchor", "middle").attr("x", x + distlabelw / 2 + distlabelpad).attr("y", junctionheight + exonheight / 2).attr("fill", "white").attr("dominant-baseline", "central").attr("font-size", distfontsize).attr("font-family", font);
-    x += distlabelw + distlabelpad * 2;
-  }
-  intronstart = x;
-  if (leftinintron || rightinintron) {
-    if (leftinintron) {
-    } else {
-      x += intronwidth;
-    }
-    g.append("rect").attr("fill", "none").attr("stroke", exoncolor).attr("x", x).attr("y", junctionheight).attr("width", distlabelw + distlabelpad * 2).attr("height", exonheight).attr("shape-rendering", "crispEdges");
-    g.append("text").text(distlabel).attr("text-anchor", "middle").attr("x", x + distlabelw / 2 + distlabelpad).attr("y", junctionheight + exonheight / 2).attr("font-size", distfontsize).attr("font-family", font).attr("dominant-baseline", "central");
-    x += distlabelw + distlabelpad * 2;
-    if (leftinintron) {
-      x += intronwidth;
-    }
-  } else {
-    x += intronwidth;
-  }
-  intronstop = x;
-  g.append("line").attr("x1", intronstart + (leftinintron ? distlabelw + distlabelpad * 2 : 0)).attr("y1", junctionheight + exonheight / 2).attr("x2", intronstop - (rightinintron ? distlabelw + distlabelpad * 2 : 0)).attr("y2", junctionheight + exonheight / 2).attr("stroke", exoncolor).attr("shape-rendering", "crispEdges");
-  if (rightinexon) {
-    g.append("rect").attr("fill", color_truncateexon).attr("stroke", color_truncateexon).attr("x", x).attr("y", junctionheight).attr("width", distlabelw + distlabelpad * 2).attr("height", exonheight).attr("shape-rendering", "crispEdges");
-    g.append("text").text(distlabel).attr("text-anchor", "middle").attr("x", x + distlabelw / 2 + distlabelpad).attr("y", junctionheight + exonheight / 2).attr("fill", "white").attr("dominant-baseline", "central").attr("font-size", distfontsize).attr("font-family", font);
-    x += distlabelw + distlabelpad * 2;
-  }
-  g.append("rect").attr("fill", exoncolor).attr("stroke", exoncolor).attr("x", x).attr("y", junctionheight).attr("width", exonwidth).attr("height", exonheight).attr("shape-rendering", "crispEdges");
-  g.append("text").text("e" + (evt.exon5idx + 1 + 1)).attr("text-anchor", "middle").attr("x", x + exonwidth / 2).attr("y", junctionheight + exonheight / 2).attr("fill", "white").attr("dominant-baseline", "central").attr("font-size", distfontsize).attr("font-family", font);
-  {
-    let x1, x2;
-    if (leftinexon || leftinintron) {
-      x2 = intronstop;
-      if (leftinexon) {
-        x1 = intronstart - distlabelw - distlabelpad * 2;
-      } else {
-        x1 = intronstart + distlabelw + distlabelpad * 2;
-      }
-    } else {
-      x1 = intronstart;
-      if (rightinintron) {
-        x2 = intronstop - distlabelw - distlabelpad * 2;
-      } else {
-        x2 = intronstop + distlabelw + distlabelpad * 2;
-      }
-    }
-    g.append("path").attr("d", "M" + x1 + "," + junctionheight + "L" + (x1 + x2) / 2 + ",0L" + x2 + "," + junctionheight).attr("stroke", junctionBcolor).attr("fill", "none");
-    g.append("text").text(evt.junctionB.v + (evt.frame != void 0 ? evt.frame == IN_frame ? ", in frame" : ",out of frame" : "")).attr("x", (x1 + x2) / 2).attr("y", -1).attr("text-anchor", "middle").attr("font-size", distfontsize).attr("fill", junctionBcolor);
-  }
-  let jAreadcounttext;
-  {
-    const line = g.append("path").attr(
-      "d",
-      "M" + intronstart + "," + (junctionheight + exonheight) + "L" + (intronstart + intronstop) / 2 + "," + (junctionheight * 2 + exonheight) + "L" + intronstop + "," + (junctionheight + exonheight)
-    ).attr("stroke", exoncolor).attr("fill", "none");
-    const nj = evt.junctionA;
-    if (nj) {
-      jAreadcounttext = g.append("text").text(nj.v).attr("x", (intronstart + intronstop) / 2).attr("y", junctionheight * 2 + exonheight + 1).attr("text-anchor", "middle").attr("font-size", distfontsize).attr("dominant-baseline", "hanging");
-    } else {
-      line.attr("stroke-dasharray", "3,3");
-    }
-  }
-  svg.attr("width", xpad * 2 + exonwidth * 2 + intronwidth + distlabelw + distlabelpad * 2).attr("height", ypad * 2 + junctionheight * 2 + exonheight);
-  return jAreadcounttext;
-}
-export {
-  spliceevent_a53ss_diagram_default as default
-};
-//# sourceMappingURL=spliceevent.a53ss.diagram-4Q4JF4RX.js.map