@sjcrh/proteinpaint-client 2.185.0 → 2.186.0

package/dist/chunk-3JAC5CHL.js

@@ -1,407 +0,0 @@
-import {
-  getMaxLabelWidth,
-  renderTable,
-  table2col
-} from "./chunk-YWUVCXFS.js";
-import {
-  SINGLECELL_GENE_EXPRESSION
-} from "./chunk-EGWVYY7K.js";
-import {
-  basis_default,
-  line_default
-} from "./chunk-KSGA62R2.js";
-import {
-  axisLeft,
-  axisTop
-} from "./chunk-LOZEKOES.js";
-import {
-  format,
-  linear,
-  log
-} from "./chunk-OAWQ6LOO.js";
-import {
-  brushX,
-  brushY
-} from "./chunk-KYBIQBXE.js";
-import {
-  rgb
-} from "./chunk-OMR2DT66.js";
-
-// plots/violin.renderer.js
-function setViolinRenderer(self) {
-  self.render = function() {
-    const settings = self.config.settings.violin;
-    const isH = settings.orientation === "horizontal";
-    const t1 = self.config.term;
-    const t2 = self.config.term2;
-    const termNum = t2?.term.type === "condition" || t2?.term.type === "samplelst" || t2?.term.type === "categorical" || (t2?.term.type === "float" || t2?.term.type === "integer") && t1.q.mode === "continuous" ? t2 : t1;
-    if (termNum && termNum.term?.values) {
-      for (const [k, v] of Object.entries(termNum.term.values)) {
-        if (v.uncomputable) {
-          if (termNum.q.hiddenValues[k]) {
-            termNum.q.hiddenValues[v.label] = 1;
-            delete termNum.q.hiddenValues[k];
-          }
-        }
-      }
-    }
-    self.dom.violinDiv.selectAll("*").remove();
-    const chartKeys = Object.keys(self.data.charts);
-    if (!chartKeys?.length) {
-      self.dom.banner.html(`<span>No visible violin plot data to render</span>`).style("display", "block");
-      self.dom.legendDiv.selectAll("*").remove();
-      return;
-    }
-    for (const chartKey of chartKeys) {
-      const chart = self.data.charts[chartKey];
-      const plots = chart.plots.filter((p) => !termNum?.q?.hiddenValues?.[p.label || p.seriesId]);
-      if (settings.orderByMedian == true) {
-        plots.sort(
-          (a, b) => a.summaryStats.find((x) => x.id === "median").value - b.summaryStats.find((x) => x.id === "median").value
-        );
-      }
-      if (self.legendRenderer) self.legendRenderer(getLegendGrps(termNum, self));
-      const chartDiv = self.dom.violinDiv.append("div").attr("class", "sjpp-vp-chartDiv").style("padding", Object.keys(self.data.charts).length > 1 ? "20px 20px 0px 0px" : "0px");
-      chart.chartDiv = chartDiv;
-      if (plots.length === 0) {
-        chartDiv.html(
-          ` <span style="opacity:.6;font-size:1em;margin-left:90px;">No visible violin plot data to render</span>`
-        );
-        return;
-      }
-      chartDiv.select(".sjpp-violin-plot").remove();
-      const chartWrapper = chartDiv.append("div").style("display", "inline-block");
-      if (chart.chartId) {
-        const totalCount = chart.plots.reduce((acc, plot) => acc + plot.plotValueCount, 0);
-        chartWrapper.append("div").attr("class", "pp-chart-title").style("display", "block").style("text-align", "center").style("font-size", "1.1em").style("margin-bottom", "5px").html(`${self.getChartTitle(chart.chartId)} (n=${totalCount})`);
-      }
-      const svgData = renderSvg(t1, plots, chartWrapper, self, isH, settings);
-      renderScale(t1, t2, settings, isH, svgData, self);
-      let y = 0;
-      const thickness = self.settings.plotThickness || self.getAutoThickness();
-      for (const [plotIdx, plot] of plots.entries()) {
-        const wScale = linear().domain([plot.density.densityMax, plot.density.densityMin]).range([thickness / 2, 0]);
-        let areaBuilder;
-        if (isH) {
-          areaBuilder = line_default().curve(basis_default).x((d) => svgData.axisScale(d.x0)).y((d) => wScale(d.density));
-        } else {
-          areaBuilder = line_default().curve(basis_default).x((d) => wScale(d.density)).y((d) => svgData.axisScale(d.x0));
-        }
-        const { violinG, height } = renderViolinPlot(svgData, plot, isH, wScale, areaBuilder, y);
-        y += height;
-        if (self.opts.mode != "minimal") renderLabels(t1, t2, violinG, plot, isH, settings);
-        if (self.config.term.term.type == SINGLECELL_GENE_EXPRESSION) {
-        } else {
-          if (self.opts.mode != "minimal") renderBrushing(t1, t2, violinG, settings, plot, isH, svgData);
-        }
-        self.labelHideLegendClicking(t2, plot);
-      }
-      if (self.settings.showAssociationTests) self.renderPvalueTable(chartDiv, chart);
-    }
-  };
-  self.displaySummaryStats = function(d, event) {
-    if (!d.summaryStats) return;
-    self.dom.hovertip.clear().show(event.clientX, event.clientY);
-    const table = table2col({ holder: self.dom.hovertip.d.append("div") });
-    for (const { label, value } of Object.values(d.summaryStats)) table.addRow(label, value);
-  };
-  self.getAutoThickness = function() {
-    let maxPlotCount = 0;
-    for (const k of Object.keys(this.data.charts)) {
-      const chart = this.data.charts[k];
-      maxPlotCount = Math.max(maxPlotCount, chart.plots.length);
-    }
-    if (maxPlotCount == 1) return 150;
-    return Math.min(100, Math.max(40, 600 / maxPlotCount));
-  };
-  self.getPlotThicknessWithPadding = function() {
-    const plotThickness = self.settings.plotThickness || self.getAutoThickness();
-    return plotThickness + self.settings.rowSpace;
-  };
-  self.renderPvalueTable = function(chartDiv, chart) {
-    if (!chart.pvalues) return;
-    const tableHolder = chartDiv.append("div").classed("sjpp-tableHolder", true).style("display", "inline-block").style("padding", "10px").style("vertical-align", "top").style("margin-left", "0px").style("margin-top", "30px").style("margin-right", "30px");
-    const t1 = self.config.term;
-    const t2 = self.config.term2;
-    if (!t2) {
-      tableHolder.style("display", "none");
-      return;
-    }
-    const termNum = t2?.term.type === "condition" || t2?.term.type === "samplelst" || t2?.term.type === "categorical" || (t2?.term.type === "float" || t2?.term.type === "integer") && t1.q.mode === "continuous" ? t2 : t1;
-    const pvalues = chart.pvalues.filter((arr) => {
-      for (let i = 0; i < arr.length; i++) {
-        if (typeof arr[i].value === "string") {
-          if (termNum.q?.hiddenValues && arr[i].value in termNum.q.hiddenValues) {
-            return false;
-          }
-        }
-      }
-      return true;
-    });
-    tableHolder.style("display", "inline-block").style("vertical-align", "top").append("div").style("font-weight", "bold").text(pvalues.length > 0 ? "Group comparisons (Wilcoxon's rank sum test)" : "");
-    const columns = [{ label: "Group 1" }, { label: "Group 2" }, { label: "P-value" }];
-    const rows = pvalues;
-    const isH = this.settings.orientation === "horizontal";
-    const maxHeight = isH ? self.getPlotThicknessWithPadding() * chart.plots.length + 10 : this.settings.svgw + this.config.term.term.name.length;
-    renderTable({
-      rows,
-      columns,
-      div: tableHolder,
-      showLines: false,
-      maxWidth: "27vw",
-      maxHeight: `${maxHeight}px`,
-      resize: true
-    });
-  };
-  self.getChartTitle = function(chartId) {
-    if (!self.config.term0) return chartId;
-    return self.config.term0.term.values && chartId in self.config.term0.term.values ? self.config.term0.term.values[chartId].label : chartId;
-  };
-  function createMargins(labelsize, settings, isH, isMinimal) {
-    let margins;
-    if (isMinimal) {
-      margins = isH ? { left: 5, top: settings.axisHeight, right: settings.rightMargin, bottom: 10 } : { left: settings.axisHeight, top: 30, right: settings.rightMargin, bottom: 10 };
-    } else {
-      margins = isH ? { left: labelsize + 5, top: settings.axisHeight, right: settings.rightMargin, bottom: 10 } : { left: settings.axisHeight, top: 50, right: settings.rightMargin, bottom: labelsize };
-    }
-    return margins;
-  }
-  function renderSvg(t1, plots, chartDiv, self2, isH, settings) {
-    const violinDiv = chartDiv.append("div").style("display", "inline-block").style("padding", self2.opts.mode != "minimal" ? "5px" : "0px").style("overflow", "auto").style("scrollbar-width", "none");
-    const violinSvg = violinDiv.append("svg");
-    const labelsize = getMaxLabelWidth(
-      violinSvg,
-      plots.map((plot) => `${plot.label}, n=${plot.plotValueCount}`)
-    );
-    const margin = createMargins(labelsize, settings, isH, self2.opts.mode == "minimal");
-    const plotThickness = self2.getPlotThicknessWithPadding();
-    const width = margin.left + margin.top + (isH ? settings.svgw : plotThickness * plots.length + t1.term.name.length);
-    const height = margin.bottom + margin.top + (isH ? plotThickness * plots.length : settings.svgw + t1.term.name.length);
-    violinSvg.attr("width", width).attr("height", height).classed("sjpp-violin-plot", true).attr("data-testid", "sja_violin_plot");
-    const svgG = violinSvg.append("g").attr("transform", "translate(" + margin.left + "," + margin.top + ")");
-    return { margin, svgG, axisScale: createNumericScale(self2, settings, isH), violinSvg };
-  }
-  function renderScale(t1, t2, settings, isH, svg, self2) {
-    const g = svg.svgG.append("g").style("font-size", "12").classed(settings.isLogScale ? "sjpp-logscale" : "sjpp-linearscale", true);
-    const ticks = settings.isLogScale ? svg.axisScale.ticks(15) : (
-      // svg.axisScale.ticks().filter(tick => tick > 0 || tick < 0)
-      svg.axisScale.ticks()
-    );
-    g.call(
-      (isH ? axisTop : axisLeft)().scale(svg.axisScale).tickFormat((d, i) => {
-        if (settings.isLogScale) {
-          if (self2.app.vocabApi.termdbConfig.logscaleBase2) {
-            if (ticks.length > 10 && i % 2 !== 0) return "";
-            if (d < 0.1) return format(".3f")(d);
-            return format(".1f")(d);
-          } else {
-            if (ticks.length >= 12 && i % 5 !== 0) return "";
-            if (d < 50) return d;
-            return format(".1s")(d);
-          }
-        }
-        if (ticks.length >= 12 && i % 2 !== 0) return "";
-        return d;
-      }).tickValues(ticks)
-    );
-    if (self2.opts.mode != "minimal") {
-      const n = t2?.q?.mode === "continuous" ? t2.term.name : t1.term.name;
-      const lab = svg.svgG.append("text").text(n).classed("sjpp-numeric-term-label", true).attr("data-testid", `sjpp-violin-label-${n}`).style("font-weight", 600).attr("text-anchor", "middle").attr("x", isH ? settings.svgw / 2 : -settings.svgw / 2).attr("y", isH ? -30 : -45).style("opacity", 0).attr("transform", isH ? null : "rotate(-90)").style("opacity", 1);
-    }
-  }
-  function renderViolinPlot(svgData, plot, isH, wScale, areaBuilder, y) {
-    const label = plot.label?.split(",")[0];
-    const catTerm = self.config.term.q.mode == "discrete" ? self.config.term : self.config.term2;
-    const category = catTerm?.term.values ? Object.values(catTerm.term.values).find((o) => o.label == label) : null;
-    let color;
-    if (catTerm) {
-      if (catTerm.q.type == "predefined-groupset" || catTerm.q.type == "custom-groupset") {
-        const groupset = catTerm.q.type == "predefined-groupset" ? catTerm.term.groupsetting.lst[catTerm.q.predefined_groupset_idx] : catTerm.q.customset;
-        if (!groupset) throw "groupset is missing";
-        const group = groupset.groups.find((g) => g.name == label);
-        if (group?.color) color = group.color;
-      } else {
-        color = category?.color;
-      }
-    }
-    if (!color) color = self.config.settings.violin.defaultColor;
-    if (!plot.color) plot.color = color;
-    if (category && !category.color) category.color = color;
-    const svg = svgData.svgG;
-    const violinG = svg.append("g").datum(plot).attr("class", "sjpp-violinG");
-    renderArea(violinG, plot, areaBuilder);
-    renderArea(violinG, plot, isH ? areaBuilder.y((d) => -wScale(d.density)) : areaBuilder.x((d) => -wScale(d.density)));
-    renderSymbolImage(self, violinG, plot, isH);
-    if (self.opts.mode != "minimal") renderMedian(violinG, isH, plot, svgData, self);
-    renderLines(violinG, isH, self.config.settings.violin.lines, svgData);
-    if ("value" in self.state.config) {
-      const value = svgData.axisScale(self.state.config.value);
-      const s = self.config.settings.violin;
-      violinG.append("line").style("stroke", "black").style("stroke-width", s.medianThickness).attr("x1", 200).attr("x2", 200).attr("x1", isH ? value : -s.medianLength).attr("x2", isH ? value : s.medianLength).attr("y1", isH ? -s.medianLength : value).attr("y2", isH ? s.medianLength : value);
-    }
-    let height = self.getPlotThicknessWithPadding();
-    const translate = isH ? `translate(0, ${y + height / 2}) ` : `translate(${y + height / 2}, 0)`;
-    violinG.attr("transform", translate);
-    return { violinG, height };
-  }
-  function renderLabels(t1, t2, violinG, plot, isH, settings) {
-    violinG.append("text").attr("data-testid", "sjpp-violin-label").text(`${plot.label}, n=${plot.plotValueCount}`).style("cursor", "pointer").on("click", function(event) {
-      if (!event) return;
-      self.displayLabelClickMenu(t1, t2, plot, event);
-    }).on("mouseover", function(event, d) {
-      event.stopPropagation();
-      if (!event) return;
-      self.displaySummaryStats(d, event);
-    }).on("mouseout", function() {
-      self.dom.hovertip.hide();
-    }).style("opacity", 0).style("opacity", 1).attr("x", isH ? -5 : 0 - settings.svgw - 5).attr("y", 0).attr("text-anchor", "end").attr("dominant-baseline", "central").attr("transform", isH ? null : "rotate(-90)");
-  }
-  function renderArea(violinG, plot, areaBuilder) {
-    if (plot.density.densityMax == 0) return;
-    violinG.append("path").attr("class", "sjpp-vp-path").style("fill", self.opts.mode === "minimal" ? rgb(221, 221, 221) : plot.color).style("opacity", 0).attr("stroke", rgb(plot.color).darker()).attr("stroke-width", 1).attr("stroke-linejoin", "round").style("opacity", "0.8").attr("d", areaBuilder(plot.density.bins));
-  }
-  function renderSymbolImage(self2, violinG, plot, isH) {
-    const i = violinG.append("image").style("opacity", 0).classed(self2.config.settings.violin.datasymbol === "rug" ? "sjpp-rug-img" : "sjpp-beans-img", true).style("opacity", 1).attr("xlink:href", plot.src).attr(
-      "transform",
-      isH ? `translate(0, -${self2.settings.radius / 2})` : `translate(-${self2.settings.radius / 2}, 0)`
-    );
-    if (self2.settings.orientation == "horizontal") {
-      i.attr("width", self2.settings.svgw);
-    } else if (self2.settings.orientation == "vertical") {
-      i.attr("height", self2.settings.svgw);
-    }
-  }
-  function renderMedian(violinG, isH, plot, svgData, self2) {
-    const s = self2.config.settings.violin;
-    const median = svgData.axisScale(plot.summaryStats.median.value);
-    if (plot.plotValueCount >= 2) {
-      violinG.append("line").attr("class", "sjpp-median-line").style("stroke-width", s.medianThickness).style("stroke", s.medianColor).style("opacity", "0.5").attr("y1", isH ? -s.medianLength : median).attr("y2", isH ? s.medianLength : median).attr("x1", isH ? median : -s.medianLength).attr("x2", isH ? median : s.medianLength);
-    } else return;
-  }
-  function renderLines(violinG, isH, lines, svgData) {
-    const plotThickness = self.settings.plotThickness;
-    violinG.selectAll(".sjpp-vp-line").remove();
-    if (!lines?.length) return;
-    for (const line of lines) {
-      violinG.append("line").attr("class", "sjpp-vp-line").style("stroke", self.opts.mode == "minimal" ? "red" : "black").attr("y1", isH ? -(plotThickness / 2) : svgData.axisScale(line)).attr("y2", isH ? plotThickness / 2 : svgData.axisScale(line)).attr("x1", isH ? svgData.axisScale(line) : -(plotThickness / 2)).attr("x2", isH ? svgData.axisScale(line) : plotThickness / 2);
-    }
-  }
-  function renderBrushing(t1, t2, violinG, settings, plot, isH, svgData) {
-    if (settings.datasymbol === "rug" || settings.datasymbol === "bean") {
-      const br = isH ? brushX().extent([
-        [0, -20],
-        [settings.svgw, 20]
-      ]).on("end", (event) => {
-        if (!event.selection) return;
-        self.displayBrushMenu(t1, t2, self, plot, event, svgData.axisScale, isH);
-        document.body.addEventListener("pointerdown", onClickOut, true);
-      }) : brushY().extent([
-        [-20, 0],
-        [20, settings.svgw]
-      ]).on("end", (event) => {
-        if (!event.selection) return;
-        self.displayBrushMenu(t1, t2, self, plot, event, svgData.axisScale, isH);
-        document.body.addEventListener("pointerdown", onClickOut, true);
-      });
-      const brushG = violinG.append("g").classed("sjpp-brush", true).call(br);
-      const onClickOut = (e) => {
-        if (!brushG || !br) return;
-        if (!brushG.node().contains(e.target)) br.clear(brushG);
-        document.body.removeEventListener("pointerdown", onClickOut, true);
-      };
-    }
-  }
-  self.toggleLoadingDiv = function(display = "") {
-    if (display != "none") {
-      self.dom.loadingDiv.style("opacity", 0).style("display", display).transition().duration("loadingWait" in self ? self.loadingWait : 3e3).style("opacity", 1);
-    } else {
-      self.dom.loadingDiv.style("display", display);
-    }
-    self.loadingWait = 1e3;
-  };
-}
-function createNumericScale(self, settings, isH) {
-  let axisScale;
-  settings.isLogScale ? axisScale = log().base(self.app.vocabApi.termdbConfig.logscaleBase2 ? 2 : 10).domain([self.data.min, self.data.max]).range(isH ? [0, settings.svgw] : [settings.svgw, 0]) : axisScale = linear().domain([self.data.min, self.data.max]).range(isH ? [0, settings.svgw] : [settings.svgw, 0]);
-  return axisScale;
-}
-function getLegendGrps(termNum, self) {
-  const legendGrps = [], t1 = self.config.term, t2 = self.config.term2, headingStyle = "color: #555; font-weight: 400";
-  if (self.settings.showStats) addDescriptiveStats(t1, legendGrps, headingStyle, self);
-  if (t2?.term.type === "float" || t2?.q.mode === "continuous" || t2?.term.type === "integer")
-    addDescriptiveStats(t2, legendGrps, headingStyle, self);
-  addUncomputableValues(
-    t1?.q.mode === "continuous" && t1?.q.hiddenValues && Object.keys(t1?.q.hiddenValues).length > 0 ? t1 : t2?.q.mode === "continuous" && t2?.q.hiddenValues && Object.keys(t2?.q.hiddenValues).length > 0 ? t2 : null,
-    legendGrps,
-    headingStyle,
-    self
-  );
-  if (t2) {
-    if (termNum.q.hiddenValues && Object.entries(termNum.q.hiddenValues).length != 0) {
-      addHiddenValues(termNum, legendGrps, headingStyle);
-    }
-  }
-  return legendGrps;
-}
-function addDescriptiveStats(term, legendGrps, headingStyle, self) {
-  if (term?.q.descrStats) {
-    const items = Object.values(term.q.descrStats).map((stat) => {
-      return {
-        text: `${stat.label}: ${stat.value}`,
-        noIcon: true
-      };
-    });
-    const title = self.config.term2?.term.type === "float" || self.config.term2?.term.type === "integer" ? `Descriptive statistics: ${term.term.name}` : `Descriptive statistics`;
-    const name = `<span style="${headingStyle}">${title}</span>`;
-    legendGrps.push({ name, items });
-  }
-}
-function addUncomputableValues(term, legendGrps, headingStyle, self) {
-  if (term?.term.values) {
-    const items = [];
-    for (const k in term.term.values) {
-      if (self.data.uncomputableValues?.[term.term.values[k]?.label]) {
-        items.push({
-          text: `${term.term.values[k].label}, n = ${self.data.uncomputableValues[term.term.values[k].label]}`,
-          noIcon: true,
-          /** Need to specify that this is a hidden value for
-           * text styling in the legend but not a plot to avoid
-           * rendering a tooltip or click events.
-           */
-          isHidden: true,
-          isClickable: false,
-          hiddenOpacity: 1
-        });
-      }
-    }
-    if (items.length) {
-      const name = self.config.term2?.term.type === "float" || self.config.term2?.term.type === "integer" ? `<span style="${headingStyle}">${term.term.name}</span>` : `<span style="${headingStyle}">Other categories</span>`;
-      legendGrps.push({ name, items });
-    }
-  }
-}
-function addHiddenValues(term, legendGrps, headingStyle) {
-  const items = [];
-  for (const key of Object.keys(term.q.hiddenValues)) {
-    items.push({
-      text: `${key}`,
-      noIcon: true,
-      /** Need to specify that this is a hidden value for
-       * text styling in the legend and  a plot for
-       * rendering a tooltip or click events.
-       */
-      isHidden: true,
-      isClickable: true,
-      hiddenOpacity: 1
-    });
-  }
-  const title = `${term.term.name}`;
-  const name = `<span style="${headingStyle}">${title}</span>`;
-  legendGrps.push({ name, items });
-}
-
-export {
-  setViolinRenderer,
-  createNumericScale
-};
-//# sourceMappingURL=chunk-3JAC5CHL.js.map

package/dist/chunk-3QBZ2Y77.js

@@ -1,188 +0,0 @@
-import {
-  __glob
-} from "./chunk-HFNDKYVF.js";
-
-// import("../plots/**/*.js") in plots/importPlot.js
-var globImport_plots_js = __glob({
-  "../plots/alphaGenome.js": () => import("./alphaGenome-PVCRXAQK.js"),
-  "../plots/barchart.data.js": () => import("./barchart.data-MVVKPDLE.js"),
-  "../plots/barchart.events.js": () => import("./barchart.events-B6HQTLK2.js"),
-  "../plots/barchart.js": () => import("./barchart-MLCCU6SU.js"),
-  "../plots/bars.renderer.js": () => import("./bars.renderer-JHCZDSM6.js"),
-  "../plots/bars.settings.js": () => import("./bars.settings-SDU7PZOS.js"),
-  "../plots/brainImaging.js": () => import("./brainImaging-WRBGYLHK.js"),
-  "../plots/controls.btns.js": () => import("./controls.btns-3V7SNQT3.js"),
-  "../plots/controls.config.js": () => import("./controls.config-TAVZDHFZ.js"),
-  "../plots/controls.js": () => import("./controls-BQR3WY5W.js"),
-  "../plots/cuminc.js": () => import("./cuminc-EDXOOI5R.js"),
-  "../plots/dataDownload.js": () => import("./dataDownload-KANEHJXJ.js"),
-  "../plots/dictionary.js": () => import("./dictionary-YOTUFVES.js"),
-  "../plots/dziviewer/plot.dzi.js": () => import("./plot.dzi-4OQSO7SY.js"),
-  "../plots/facet.js": () => import("./facet-SY6PYSTN.js"),
-  "../plots/gb/test/genomeBrowser.spec.js": () => import("./genomeBrowser.spec-DRYIFJLY.js"),
-  "../plots/geneExpression.js": () => import("./geneExpression-AHKX57BT.js"),
-  "../plots/geneORA.js": () => import("./geneORA-VJMYI4BT.js"),
-  "../plots/geneset.js": () => import("./geneset-HKXFHM5K.js"),
-  "../plots/gsea.js": () => import("./gsea-Z7DSDFOA.js"),
-  "../plots/hierCluster.js": () => import("./hierCluster-HC2B5XRR.js"),
-  "../plots/imagePlot.js": () => import("./imagePlot-GUXRGYQA.js"),
-  "../plots/importPlot.js": () => import("./importPlot-M5HGLHRO.js"),
-  "../plots/matrix.js": () => import("./matrix-B6NPQFFF.js"),
-  "../plots/matrix/hierCluster.config.js": () => import("./hierCluster.config-E3DIJWL5.js"),
-  "../plots/matrix/hierCluster.interactivity.js": () => import("./hierCluster.interactivity-LRNPDTEH.js"),
-  "../plots/matrix/hierCluster.js": () => import("./hierCluster-PLHVN5S3.js"),
-  "../plots/matrix/hierCluster.renderers.js": () => import("./hierCluster.renderers-FWOV4Q47.js"),
-  "../plots/matrix/matrix.cells.js": () => import("./matrix.cells-KEIOXJQ7.js"),
-  "../plots/matrix/matrix.cluster.js": () => import("./matrix.cluster-NU5CYRUT.js"),
-  "../plots/matrix/matrix.config.js": () => import("./matrix.config-KJNJXPJJ.js"),
-  "../plots/matrix/matrix.data.js": () => import("./matrix.data-QGCGFLD7.js"),
-  "../plots/matrix/matrix.dom.js": () => import("./matrix.dom-KGXRCCKU.js"),
-  "../plots/matrix/matrix.groups.js": () => import("./matrix.groups-HBPLZ2QX.js"),
-  "../plots/matrix/matrix.interactivity.js": () => import("./matrix.interactivity-H4MCMJXU.js"),
-  "../plots/matrix/matrix.js": () => import("./matrix-UAKRJL5A.js"),
-  "../plots/matrix/matrix.layout.js": () => import("./matrix.layout-RFKQJM5D.js"),
-  "../plots/matrix/matrix.legend.js": () => import("./matrix.legend-UCL7HM26.js"),
-  "../plots/matrix/matrix.renderers.js": () => import("./matrix.renderers-7JJIC6VC.js"),
-  "../plots/matrix/matrix.serieses.js": () => import("./matrix.serieses-S2TJ3E6P.js"),
-  "../plots/matrix/matrix.sort.js": () => import("./matrix.sort-CFA4UWBJ.js"),
-  "../plots/matrix/matrix.sorterUi.js": () => import("./matrix.sorterUi-FT7K5664.js"),
-  "../plots/matrix/test/hierCluster.integration.spec.js": () => import("./hierCluster.integration.spec-OQLPUQG4.js"),
-  "../plots/matrix/test/matrix.integration.spec.js": () => import("./matrix.integration.spec-VAXIR3E6.js"),
-  "../plots/matrix/test/matrix.sort.unit.spec.js": () => import("./matrix.sort.unit.spec-MQQVWWNT.js"),
-  "../plots/matrix/test/matrix.sorterUi.unit.spec.js": () => import("./matrix.sorterUi.unit.spec-LG4TI7VF.js"),
-  "../plots/matrix/test/oncomatrix.spec.js": () => import("./oncomatrix.spec-VXTF44K5.js"),
-  "../plots/plot.brainImaging.js": () => import("./plot.brainImaging-5AI7BSD4.js"),
-  "../plots/plot.disco.js": () => import("./plot.disco-HNNZHK5Z.js"),
-  "../plots/plot.ssgq.js": () => import("./plot.ssgq-VZTTGECT.js"),
-  "../plots/proteomeAbundance.js": () => import("./proteomeAbundance-OF27N347.js"),
-  "../plots/regression.inputs.js": () => import("./regression.inputs-RWFIJLNF.js"),
-  "../plots/regression.inputs.term.js": () => import("./regression.inputs.term-QIU5SHTN.js"),
-  "../plots/regression.inputs.values.table.js": () => import("./regression.inputs.values.table-FM6QTSEV.js"),
-  "../plots/regression.js": () => import("./regression-Y4NYGZSA.js"),
-  "../plots/regression.results.js": () => import("./regression.results-YUDCHUZJ.js"),
-  "../plots/sampleView.js": () => import("./sampleView-TOK5Y5KU.js"),
-  "../plots/scatter/test/scatter.integration.spec.js": () => import("./scatter.integration.spec-ZPTM3AGQ.js"),
-  "../plots/singleCellPlot.js": () => import("./singleCellPlot-IVLVKOO6.js"),
-  "../plots/stattable.js": () => import("./stattable-XXEIFPGM.js"),
-  "../plots/survival/test/survival.integration.spec.js": () => import("./survival.integration.spec-37KAJ5IK.js"),
-  "../plots/table.js": () => import("./table-VHO7E5PI.js"),
-  "../plots/test/barchart.integration.spec.js": () => import("./barchart.integration.spec-S43A7C7N.js"),
-  "../plots/test/cuminc.integration.spec.js": () => import("./cuminc.integration.spec-UZA7BDTB.js"),
-  "../plots/test/dataDownload.integration.spec.js": () => import("./dataDownload.integration.spec-23WLHSWJ.js"),
-  "../plots/test/expclust.gdc.spec.js": () => import("./expclust.gdc.spec-SFOCKBLR.js"),
-  "../plots/test/profile.spec.js": () => import("./profile.spec-V7EQBXT2.js"),
-  "../plots/test/regression.integration.spec.js": () => import("./regression.integration.spec-YRKKU7HL.js"),
-  "../plots/test/regression.spec.js": () => import("./regression.spec-G4GIIV32.js"),
-  "../plots/test/sampleScatter.spec.js": () => import("./sampleScatter.spec-UIUYO4WR.js"),
-  "../plots/test/summary.integration.spec.js": () => import("./summary.integration.spec-DHY6XCEJ.js"),
-  "../plots/test/violin.integration.spec.js": () => import("./violin.integration.spec-F2UD7BHC.js"),
-  "../plots/violin.interactivity.js": () => import("./violin.interactivity-LVDTDEPQ.js"),
-  "../plots/violin.js": () => import("./violin-YHE3WSGR.js"),
-  "../plots/violin.renderer.js": () => import("./violin.renderer-IIEIUGRI.js"),
-  "../plots/volcano/test/testData.js": () => import("./testData-LEJ53F2K.js"),
-  "../plots/wsiviewer/plot.wsi.js": () => import("./plot.wsi-MDWYLU4R.js")
-});
-
-// plots/importPlot.js
-async function importPlot(chartType, notFoundMessage = "") {
-  switch (chartType) {
-    case "AIProjectAdmin":
-      return await import("./AIProjectAdmin-GUBKURGO.js");
-    case "barchart":
-      return await import("./barchart-MLCCU6SU.js");
-    case "boxplot":
-      return await import("./BoxPlot-AZF2EMGQ.js");
-    case "chat":
-      return await import("./chat-X2BCTEDF.js");
-    case "correlationVolcano":
-      return await import("./CorrelationVolcano-VXW35SXU.js");
-    case "DEinput":
-      return await import("./DEinput-OJ7P4UMP.js");
-    case "dictionary":
-      return await import("./dictionary-YOTUFVES.js");
-    case "differentialAnalysis":
-      return await import("./DifferentialAnalysis-G75VUHDI.js");
-    case "Disco":
-      return await import("./Disco-DX4S44SI.js");
-    case "dmr":
-      return await import("./DmrPlot-HWYITHK2.js");
-    case "DziViewer":
-      return await import("./DziViewer-DDUK2RLO.js");
-    case "GeneExpInput":
-      return await import("./GeneExpInput-DWB7OYT2.js");
-    case "genomeBrowser":
-      return await import("./GB-DBTMRVYH.js");
-    case "grin2":
-      return await import("./grin2-GJKLNT4J.js");
-    case "gsea":
-      return await import("./gsea-Z7DSDFOA.js");
-    case "report":
-      return await import("./report-2N4FBR4Q.js");
-    case "runChart2":
-    //See frequencyChart
-    case "frequencyChart":
-      return await import("./RunChart2-MVFWLXZX.js");
-    case "profileBarchart":
-      return await import("./profileBarchart-EIKHZAPD.js");
-    case "profileBarchart2":
-      return await import("./barchart2-QMKEN6MN.js");
-    case "profileForms":
-      return await import("./profileForms-NGFRXPFF.js");
-    case "profilePlot":
-      return await import("./profilePlot-2UFKJ2OC.js");
-    case "profilePolar":
-      return await import("./polar-QSY6JG4P.js");
-    case "profilePolar2":
-      return await import("./polar2-FD6656VD.js");
-    case "profileRadar":
-      return await import("./profileRadar-B2R7OV5F.js");
-    case "profileRadar2":
-      return await import("./radar2-L2HGCUYR.js");
-    case "profileRadarFacility":
-      return await import("./profileRadarFacility-ILC7POCI.js");
-    case "profileRadarFacility2":
-      return await import("./radarFacility2-HXUUTRYO.js");
-    case "proteinView":
-      return await import("./proteinView-AS6ZV2JT.js");
-    case "numericDictTermCluster":
-      return await import("./numericDictTermCluster-DOD66G3A.js");
-    case "sampleScatter":
-      return await import("./scatter-4DXHOWVY.js");
-    case "sc":
-      return await import("./SC-BRC3J2O4.js");
-    case "summarizeCnvGeneexp":
-      return await import("./summarizeCnvGeneexp-YKUQGDQF.js");
-    case "summarizeGeneexpSurvival":
-      return await import("./summarizeGeneexpSurvival-ARGG5VDC.js");
-    case "summarizeMutationDiagnosis":
-      return await import("./summarizeMutationDiagnosis-ZX7I46SC.js");
-    case "summarizeMutationSurvival":
-      return await import("./summarizeMutationSurvival-RCFMTT43.js");
-    case "summarizeMutationCnv":
-      return await import("./summarizeMutationCnv-FMZYT3EC.js");
-    case "summaryInput":
-      return await import("./summaryInput-ANCUQGIB.js");
-    case "summary":
-      return await import("./summary-QLL5YVI2.js");
-    case "survival":
-      return await import("./survival-BG7QV52L.js");
-    case "table":
-      return await import("./table-VHO7E5PI.js");
-    case "violin":
-      return await import("./violin-YHE3WSGR.js");
-    case "volcano":
-      return await import("./Volcano-WMNFZSX2.js");
-    case "WSISamplesPlot":
-      return await import("./WsiSamplesPlot-LN75PND3.js");
-    case "WSIViewer":
-      return await import("./WSIViewer-2Z636FMA.js");
-    default:
-      if (notFoundMessage) throw notFoundMessage;
-      return await globImport_plots_js(`../plots/${chartType}.js`);
-  }
-}
-
-export {
-  importPlot
-};
-//# sourceMappingURL=chunk-3QBZ2Y77.js.map

package/dist/chunk-3QBZ2Y77.js.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../plots/importPlot.js"],
-  "sourcesContent": ["export async function importPlot(chartType, notFoundMessage = '') {\n\t// TODO: move to dynamic import of exact plot names here, instead of string-pattern,\n\t// so that the bundler does not have to guess code file extension, directory names and letter casing\n\tswitch (chartType) {\n\t\tcase 'AIProjectAdmin':\n\t\t\treturn await import('./aiProjectAdmin/AIProjectAdmin.ts')\n\n\t\tcase 'barchart':\n\t\t\treturn await import(`./barchart.js`)\n\n\t\tcase 'boxplot':\n\t\t\treturn await import(`./boxplot/BoxPlot.ts`)\n\n\t\tcase 'chat':\n\t\t\treturn await import(`./chat/chat.ts`)\n\n\t\tcase 'correlationVolcano':\n\t\t\treturn await import(`./corrVolcano/CorrelationVolcano.ts`)\n\n\t\tcase 'DEinput':\n\t\t\treturn await import(`./DEinput.ts`)\n\n\t\tcase 'dictionary':\n\t\t\treturn await import(`./dictionary.js`)\n\n\t\tcase 'differentialAnalysis':\n\t\t\treturn await import(`./diffAnalysis/DifferentialAnalysis.ts`)\n\n\t\tcase 'Disco':\n\t\t\treturn await import('./disco/Disco.ts')\n\n\t\tcase 'dmr':\n\t\t\treturn await import('./dmr/DmrPlot.ts')\n\n\t\tcase 'DziViewer':\n\t\t\treturn await import(`./dziviewer/DziViewer.ts`)\n\n\t\tcase 'GeneExpInput':\n\t\t\treturn await import(`./GeneExpInput.ts`)\n\n\t\tcase 'genomeBrowser':\n\t\t\treturn await import('./gb/GB.ts')\n\n\t\tcase 'grin2':\n\t\t\treturn await import('./grin2/grin2')\n\n\t\tcase 'gsea':\n\t\t\treturn await import(`./gsea.js`)\n\n\t\tcase 'report':\n\t\t\treturn await import(`././report/report.ts`)\n\n\t\tcase 'runChart2': //See frequencyChart\n\t\tcase 'frequencyChart':\n\t\t\treturn await import(`./runChart2/RunChart2.ts`)\n\n\t\tcase 'profileBarchart':\n\t\t\treturn await import('./profile/profileBarchart.ts')\n\n\t\tcase 'profileBarchart2':\n\t\t\treturn await import('./profile/barchart2.ts')\n\n\t\tcase 'profileForms':\n\t\t\treturn await import('./profile/profileForms.ts')\n\n\t\tcase 'profilePlot':\n\t\t\treturn await import('./profile/profilePlot.ts')\n\n\t\tcase 'profilePolar':\n\t\t\treturn await import('./profile/polar.ts')\n\n\t\tcase 'profilePolar2':\n\t\t\treturn await import('./profile/polar2.ts')\n\n\t\tcase 'profileRadar':\n\t\t\treturn await import('./profile/profileRadar.ts')\n\n\t\tcase 'profileRadar2':\n\t\t\treturn await import('./profile/radar2.ts')\n\n\t\tcase 'profileRadarFacility':\n\t\t\treturn await import('./profile/profileRadarFacility.ts')\n\n\t\tcase 'profileRadarFacility2':\n\t\t\treturn await import('./profile/radarFacility2.ts')\n\n\t\tcase 'proteinView':\n\t\t\treturn await import(`./proteinView.ts`)\n\n\t\tcase 'numericDictTermCluster':\n\t\t\treturn await import(`./numericDictTermCluster.ts`)\n\n\t\tcase 'sampleScatter':\n\t\t\treturn await import(`./scatter/scatter.js`)\n\n\t\tcase 'sc':\n\t\t\treturn await import('./sc/SC.ts')\n\n\t\tcase 'summarizeCnvGeneexp':\n\t\t\treturn await import(`./summarizeCnvGeneexp.ts`)\n\n\t\tcase 'summarizeGeneexpSurvival':\n\t\t\treturn await import(`./summarizeGeneexpSurvival.ts`)\n\n\t\tcase 'summarizeMutationDiagnosis':\n\t\t\treturn await import(`./summarizeMutationDiagnosis.ts`)\n\n\t\tcase 'summarizeMutationSurvival':\n\t\t\treturn await import(`./summarizeMutationSurvival.ts`)\n\n\t\tcase 'summarizeMutationCnv':\n\t\t\treturn await import(`./summarizeMutationCnv.ts`)\n\n\t\tcase 'summaryInput':\n\t\t\treturn await import(`./summaryInput.ts`)\n\n\t\tcase 'summary':\n\t\t\treturn await import(`./summary.ts`)\n\n\t\tcase 'survival':\n\t\t\treturn await import(`./survival/survival.js`)\n\n\t\tcase 'table':\n\t\t\treturn await import(`./table.js`)\n\n\t\tcase 'violin':\n\t\t\treturn await import(`./violin.js`)\n\n\t\tcase 'volcano':\n\t\t\treturn await import(`./volcano/Volcano.ts`)\n\n\t\tcase 'WSISamplesPlot':\n\t\t\treturn await import('./wsisamples/WsiSamplesPlot.ts')\n\n\t\tcase 'WSIViewer':\n\t\t\treturn await import('./wsiviewer/WSIViewer.ts')\n\n\t\tdefault:\n\t\t\t// temporary option to force an error, to bypass the default filename matching\n\t\t\tif (notFoundMessage) throw notFoundMessage\n\n\t\t\t// TODO: should always throw here once all chart types are handled separately as cases;\n\t\t\t// the pattern matching below is problematic because:\n\t\t\t// - it matches non-plot code file names\n\t\t\t// - it assumes a non-typescript, .js file extension\n\t\t\t// - it doesn't handle plot code that are organized under its own subdirectory\n\t\t\treturn await import(`../plots/${chartType}.js`)\n\t}\n}\n"],
-  "mappings": ";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,eAAsB,WAAW,WAAW,kBAAkB,IAAI;AAGjE,UAAQ,WAAW;AAAA,IAClB,KAAK;AACJ,aAAO,MAAM,OAAO,8BAAoC;AAAA,IAEzD,KAAK;AACJ,aAAO,MAAM,OAAO,wBAAe;AAAA,IAEpC,KAAK;AACJ,aAAO,MAAM,OAAO,uBAAsB;AAAA,IAE3C,KAAK;AACJ,aAAO,MAAM,OAAO,oBAAgB;AAAA,IAErC,KAAK;AACJ,aAAO,MAAM,OAAO,kCAAqC;AAAA,IAE1D,KAAK;AACJ,aAAO,MAAM,OAAO,uBAAc;AAAA,IAEnC,KAAK;AACJ,aAAO,MAAM,OAAO,0BAAiB;AAAA,IAEtC,KAAK;AACJ,aAAO,MAAM,OAAO,oCAAwC;AAAA,IAE7D,KAAK;AACJ,aAAO,MAAM,OAAO,qBAAkB;AAAA,IAEvC,KAAK;AACJ,aAAO,MAAM,OAAO,uBAAkB;AAAA,IAEvC,KAAK;AACJ,aAAO,MAAM,OAAO,yBAA0B;AAAA,IAE/C,KAAK;AACJ,aAAO,MAAM,OAAO,4BAAmB;AAAA,IAExC,KAAK;AACJ,aAAO,MAAM,OAAO,kBAAY;AAAA,IAEjC,KAAK;AACJ,aAAO,MAAM,OAAO,qBAAe;AAAA,IAEpC,KAAK;AACJ,aAAO,MAAM,OAAO,oBAAW;AAAA,IAEhC,KAAK;AACJ,aAAO,MAAM,OAAO,sBAAsB;AAAA,IAE3C,KAAK;AAAA;AAAA,IACL,KAAK;AACJ,aAAO,MAAM,OAAO,yBAA0B;AAAA,IAE/C,KAAK;AACJ,aAAO,MAAM,OAAO,+BAA8B;AAAA,IAEnD,KAAK;AACJ,aAAO,MAAM,OAAO,yBAAwB;AAAA,IAE7C,KAAK;AACJ,aAAO,MAAM,OAAO,4BAA2B;AAAA,IAEhD,KAAK;AACJ,aAAO,MAAM,OAAO,2BAA0B;AAAA,IAE/C,KAAK;AACJ,aAAO,MAAM,OAAO,qBAAoB;AAAA,IAEzC,KAAK;AACJ,aAAO,MAAM,OAAO,sBAAqB;AAAA,IAE1C,KAAK;AACJ,aAAO,MAAM,OAAO,4BAA2B;AAAA,IAEhD,KAAK;AACJ,aAAO,MAAM,OAAO,sBAAqB;AAAA,IAE1C,KAAK;AACJ,aAAO,MAAM,OAAO,oCAAmC;AAAA,IAExD,KAAK;AACJ,aAAO,MAAM,OAAO,8BAA6B;AAAA,IAElD,KAAK;AACJ,aAAO,MAAM,OAAO,2BAAkB;AAAA,IAEvC,KAAK;AACJ,aAAO,MAAM,OAAO,sCAA6B;AAAA,IAElD,KAAK;AACJ,aAAO,MAAM,OAAO,uBAAsB;AAAA,IAE3C,KAAK;AACJ,aAAO,MAAM,OAAO,kBAAY;AAAA,IAEjC,KAAK;AACJ,aAAO,MAAM,OAAO,mCAA0B;AAAA,IAE/C,KAAK;AACJ,aAAO,MAAM,OAAO,wCAA+B;AAAA,IAEpD,KAAK;AACJ,aAAO,MAAM,OAAO,0CAAiC;AAAA,IAEtD,KAAK;AACJ,aAAO,MAAM,OAAO,yCAAgC;AAAA,IAErD,KAAK;AACJ,aAAO,MAAM,OAAO,oCAA2B;AAAA,IAEhD,KAAK;AACJ,aAAO,MAAM,OAAO,4BAAmB;AAAA,IAExC,KAAK;AACJ,aAAO,MAAM,OAAO,uBAAc;AAAA,IAEnC,KAAK;AACJ,aAAO,MAAM,OAAO,wBAAwB;AAAA,IAE7C,KAAK;AACJ,aAAO,MAAM,OAAO,qBAAY;AAAA,IAEjC,KAAK;AACJ,aAAO,MAAM,OAAO,sBAAa;AAAA,IAElC,KAAK;AACJ,aAAO,MAAM,OAAO,uBAAsB;AAAA,IAE3C,KAAK;AACJ,aAAO,MAAM,OAAO,8BAAgC;AAAA,IAErD,KAAK;AACJ,aAAO,MAAM,OAAO,yBAA0B;AAAA,IAE/C;AAEC,UAAI,gBAAiB,OAAM;AAO3B,aAAO,MAAa,gCAAY,SAAS;AAAA,EAC3C;AACD;",
-  "names": []
-}