@sjcrh/proteinpaint-client 2.185.0 → 2.186.0

package/dist/profileForms-RA7XQ2QT.js

@@ -0,0 +1,438 @@
+import {
+  getDefaultProfilePlotSettings,
+  getProfilePlotConfig,
+  profilePlot
+} from "./chunk-E4JDHA3C.js";
+import {
+  Tabs,
+  fillTermWrapper,
+  fillTwLst
+} from "./chunk-2YC6ZVE4.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-RYCOJY7M.js";
+import "./chunk-HYOEWQ5P.js";
+import "./chunk-FN5XPUPH.js";
+import "./chunk-G6O3URDN.js";
+import "./chunk-LSEFWW72.js";
+import "./chunk-KWM6B3NL.js";
+import "./chunk-UCLS2SVB.js";
+import "./chunk-I55NLUCQ.js";
+import {
+  copyMerge,
+  getCompInit
+} from "./chunk-MVTCBVSX.js";
+import "./chunk-2K5DSRBJ.js";
+import "./chunk-X4NI4JLQ.js";
+import {
+  roundValueAuto
+} from "./chunk-L4QG7XZE.js";
+import "./chunk-DQC5FFGV.js";
+import "./chunk-UWYCEYML.js";
+import "./chunk-7UHUOC6F.js";
+import "./chunk-ZYY54HBU.js";
+import "./chunk-EGWVYY7K.js";
+import "./chunk-AMYSEKPF.js";
+import "./chunk-TV74I3Y5.js";
+import "./chunk-KSGA62R2.js";
+import {
+  axisBottom,
+  axisTop
+} from "./chunk-LOZEKOES.js";
+import "./chunk-TOU7EVFQ.js";
+import {
+  linear
+} from "./chunk-OAWQ6LOO.js";
+import "./chunk-KYBIQBXE.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-OMR2DT66.js";
+import "./chunk-HFNDKYVF.js";
+
+// plots/profile/profileForms.ts
+var YES_NO_TAB = "Yes/No Barchart";
+var IMPRESSIONS_TAB = "Impressions";
+var LIKERT_TAB = "Likert Scale";
+var profileForms = class extends profilePlot {
+  static {
+    this.type = "profileForms";
+  }
+  constructor(opts) {
+    super(opts, "profileForms");
+    this.opts = opts;
+    this.id2SCTW = {};
+  }
+  async init(appState) {
+    super.init(appState);
+    const config = structuredClone(appState.plots.find((p) => p.id === this.id));
+    this.twLst = await this.app.vocabApi.getMultivalueTWs({ parent_id: config.tw.term.id });
+    const settings = config.settings.profileForms;
+    this.tabs = [];
+    for (const plot of config.options) {
+      const tws = this.twLst.filter((tw) => tw.term.subtype == plot.subtype);
+      if (!tws.length) continue;
+      const tab = {
+        label: plot.name,
+        callback: () => {
+          this.app.dispatch({ type: "plot_edit", id: this.id, config: { activeTab: plot.name } });
+        },
+        active: false
+      };
+      if (plot.name == config.activeTab) tab.active = true;
+      if (plot.hasSC) {
+        this.id2SCTW[plot.name] = {};
+        for (const tw of this.twLst) {
+          if (tw.term.subtype != plot.subtype) continue;
+          const scTermId = tw.term.id.replace(/^POC/, "");
+          const scTW = { id: scTermId };
+          await fillTermWrapper(scTW, this.app.vocabApi);
+          this.id2SCTW[plot.name][scTermId] = scTW;
+        }
+        this.twLst.push(...Object.values(this.id2SCTW[plot.name]));
+      }
+      this.tabs.push(tab);
+    }
+    const rightDiv = this.dom.rightDiv;
+    const topDiv = rightDiv.append("div");
+    const domainDiv = topDiv.append("div").style("padding-bottom", "10px").style("font-weight", "bold");
+    const headerDiv = rightDiv.append("div").style("padding-bottom", "10px");
+    if (this.tabs.length > 1)
+      await new Tabs({
+        holder: topDiv,
+        tabsPosition: "horizontal",
+        tabs: this.tabs
+      }).main();
+    const shift = 690;
+    const shiftTop = 50;
+    const width = settings.svgw + shift + 500;
+    const svg = rightDiv.style("padding", "20px").append("svg").attr("width", width);
+    svg.append("defs").append("pattern").attr("id", `${this.id}_diagonalHatch`).attr("patternUnits", "userSpaceOnUse").attr("width", 4).attr("height", 4).append("path").attr("d", "M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2").attr("stroke-width", 1).attr("stroke", "gray");
+    this.shiftTop = shiftTop;
+    this.shift = shift;
+    const mainG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop})`);
+    const gridG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop})`);
+    this.filterG = svg.append("g").attr("transform", `translate(${shift + settings.svgw + 60}, ${shiftTop + 40})`);
+    this.legendG = svg.append("g");
+    const xAxisG = svg.append("g").attr("transform", `translate(${shift}, ${shiftTop / 2})`);
+    this.dom = copyMerge(this.dom, {
+      svg,
+      headerDiv,
+      mainG,
+      gridG,
+      legendG: this.legendG,
+      xAxisG,
+      domainDiv
+    });
+  }
+  async main() {
+    super.main();
+    if (this.tabs.length == 0) return;
+    const activeTab = this.state.config.activeTab || this.tabs[0].label;
+    this.activePlot = this.state.config.options.find((p) => p.name == activeTab);
+    this.scoreTerms = this.twLst.filter((tw) => tw.term.subtype == this.activePlot.subtype);
+    if (this.activePlot.hasSC) {
+      this.scScoreTerms = Object.values(this.id2SCTW[this.activePlot.name]);
+    }
+    const parents = this.config.tw.term.id.split("__");
+    this.module = parents[1];
+    const domain = parents.slice(1).join(" / ");
+    this.dom.domainDiv.text(domain);
+    this.categories = /* @__PURE__ */ new Set();
+    this.dom.mainG.selectAll("*").remove();
+    this.dom.gridG.selectAll("*").remove();
+    this.dom.xAxisG.selectAll("*").remove();
+    this.dom.legendG.selectAll("*").remove();
+    await this.setControls();
+    this.renderPlot();
+    this.filterG.selectAll("*").remove();
+    this.addFilterLegend();
+  }
+  renderPlot() {
+    try {
+      this.dom.headerDiv.style("display", "none");
+      switch (this.activePlot.name) {
+        case IMPRESSIONS_TAB:
+          this.renderImpressions();
+          break;
+        case LIKERT_TAB:
+          this.renderLikert();
+          break;
+        case YES_NO_TAB:
+          this.renderYesNo();
+      }
+    } catch (e) {
+      console.error("Error rendering profile forms plot:", e);
+      throw e;
+    }
+  }
+  renderImpressions() {
+  }
+  renderLikert() {
+    this.dom.headerDiv.style("display", "block");
+    this.dom.headerDiv.selectAll("*").remove();
+    let y = 0;
+    const step = 30;
+    const height = (this.scoreTerms.length + 2) * step;
+    this.dom.svg.attr("height", height + 120);
+    this.categories = /* @__PURE__ */ new Set();
+    const labelPadding = 80;
+    const tempG = this.dom.svg.append("g").style("visibility", "hidden");
+    let maxLabelWidth = 0;
+    for (const tw of this.scoreTerms) {
+      if (tw.term.type != "multivalue") continue;
+      const text = getText(tw.term.details || tw.term.name);
+      const tempText = tempG.append("text").style("font-size", "0.85em").text(text);
+      const w = tempText.node().getBBox().width;
+      if (w > maxLabelWidth) maxLabelWidth = w;
+    }
+    tempG.remove();
+    const shift = maxLabelWidth + labelPadding;
+    this.dom.mainG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
+    this.dom.gridG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
+    this.filterG.attr("transform", `translate(${shift + this.settings.svgw + 60}, ${this.shiftTop + 40})`);
+    this.dom.svg.attr("width", shift + this.settings.svgw + 500);
+    this.shift = shift;
+    for (const tw of this.scoreTerms) {
+      if (tw.term.type != "multivalue") continue;
+      const dict = this.getPercentageDict(tw);
+      this.renderLikertBar(dict, y, 25, tw);
+      y += step;
+    }
+    y += step * 2;
+    const width = this.settings.svgw;
+    const posScale = linear().domain([0, 100]).range([shift, shift + width]);
+    const posAxisBottom = axisBottom(posScale).ticks(10).tickFormat((d) => d + "%");
+    const scaleG = this.dom.svg.append("g").attr("transform", `translate(0, ${y})`);
+    posAxisBottom(scaleG);
+    const likertLegendOrder = [
+      "I Don't Know",
+      "Do Not Know",
+      "No",
+      "Not Available",
+      "Not Applicable For My Role",
+      "Almost Never",
+      "Infrequently",
+      "Sometimes",
+      "Frequently",
+      "Almost Always"
+    ];
+    const catUpperSet = new Set([...this.categories].map((c) => c.toUpperCase()));
+    const orderedCategories = likertLegendOrder.filter((c) => catUpperSet.has(c.toUpperCase()));
+    const colorMap = this.state.termdbConfig.colorMap;
+    const legendG = this.dom.legendG.attr("transform", `translate(0, ${y + 50})`);
+    const rectSize = 14;
+    const rectTextGap = 5;
+    const itemGap = 12;
+    let x = 0;
+    for (const category of orderedCategories) {
+      const key = category.toUpperCase();
+      const color = colorMap[this.module][key] || colorMap["*"][key] || colorMap["*"][category];
+      const itemG = legendG.append("g").attr("transform", `translate(${x}, 0)`);
+      itemG.append("rect").attr("width", rectSize).attr("height", rectSize).attr("fill", color);
+      const label = itemG.append("text").attr("x", rectSize + rectTextGap).attr("y", rectSize / 2).attr("dominant-baseline", "central").style("font-size", "0.8em").text(category);
+      x += rectSize + rectTextGap + label.node().getBBox().width + itemGap;
+    }
+  }
+  renderYesNo() {
+    const step = 30;
+    const height = this.scoreTerms.length * step;
+    this.dom.svg.attr("height", height * 3 + 200);
+    const labelPadding = 50;
+    const tempG = this.dom.svg.append("g").style("visibility", "hidden");
+    let maxLabelWidth = 0;
+    for (const tw of this.scoreTerms) {
+      const text2 = getText(tw.term.name);
+      const tempText = tempG.append("text").style("font-size", "0.8em").text(text2);
+      const w = tempText.node().getBBox().width;
+      if (w > maxLabelWidth) maxLabelWidth = w;
+    }
+    tempG.remove();
+    const shift = maxLabelWidth + labelPadding;
+    this.dom.mainG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
+    this.dom.gridG.attr("transform", `translate(${shift}, ${this.shiftTop})`);
+    this.dom.xAxisG.attr("transform", `translate(${shift}, ${this.shiftTop / 2})`);
+    this.filterG.attr("transform", `translate(${shift + this.settings.svgw + 60}, ${this.shiftTop + 40})`);
+    this.dom.svg.attr("width", shift + this.settings.svgw + 500);
+    this.shift = shift;
+    this.xAxisScale = linear().domain([0, 100]).range([0, this.settings.svgw]);
+    this.dom.xAxisG.call(axisTop(this.xAxisScale));
+    let y = 0;
+    let showSCBar = false;
+    for (const tw of this.scoreTerms) {
+      const percents = this.getPercentageDict(tw);
+      const scTermId = tw.term.id.replace(/^POC/, "");
+      const scTW = this.id2SCTW[this.activePlot.name][scTermId];
+      const scPercents = this.getPercentageDict(scTW);
+      const scPercentKeys = Object.keys(scPercents).filter((k) => scPercents[k] > 0).map((k) => scTW.term.values?.[k]?.label || k);
+      const scTotal = Object.values(scPercents).reduce((a, b) => a + b, 0);
+      showSCBar = scTotal > 1;
+      this.renderYesNoBar(percents, y, step, scTotal == 1 ? scPercentKeys : []);
+      if (showSCBar) {
+        y += step + 10;
+        this.renderYesNoBar(scPercents, y, step, []);
+        this.dom.mainG.append("text").text("SC").style("font-size", "0.7em").attr("x", this.settings.svgw + 8).attr("y", y + step * 0.6);
+      }
+      this.dom.mainG.append("text").text("POC").style("font-size", "0.7em").attr("x", this.settings.svgw + 8).attr("y", showSCBar ? y - step + 0.35 * step : y + step * 0.6);
+      this.dom.mainG.append("text").attr("x", -this.shift).attr("y", showSCBar ? y : y + step / 2).text(getText(tw.term.name)).attr("font-size", "0.8em").on("mouseenter", (event) => this.showText(event, tw.term.name)).on("mouseleave", () => this.tip.hide());
+      y += step + 40;
+    }
+    this.renderLines(y - 20);
+    if (showSCBar) this.dom.legendG.attr("transform", `translate(${550}, ${30 + this.settings.svgh})`);
+    else this.dom.legendG.attr("transform", `translate(${550}, ${this.settings.svgh * 0.8})`);
+    let x = 0;
+    for (const category of this.activePlot.categories) {
+      x += this.drawLegendRect(x, 0, category.name, this.dom.legendG, true);
+    }
+    let text = this.dom.legendG.append("text").attr("x", x + 80).attr("y", 18);
+    text.append("tspan").style("font-weight", "bold").text("SC:");
+    text.append("tspan").text("Site Coordinator");
+    text = this.dom.legendG.append("text").attr("x", x + 250).attr("y", 18);
+    text.append("tspan").style("font-weight", "bold").text("POC:");
+    text.append("tspan").text("Point of Care Staff");
+  }
+  onMouseOver(event) {
+    if (event.target.tagName == "rect") {
+      const path = event.target;
+      const d = path.__data__;
+      if (!d?.value) return this.onMouseOut(event);
+      const menu = this.tip.clear();
+      const percent = roundValueAuto(d.value, true, 1);
+      const row = menu.d.append("div").style("display", "flex").style("align-items", "center").style("gap", "5px");
+      if (d.color)
+        row.append("div").style("width", "12px").style("height", "12px").style("background-color", d.color).style("flex-shrink", "0");
+      row.append("span").text(`${d.key}: ${percent}%`);
+      menu.show(event.clientX, event.clientY, true, true);
+    } else this.onMouseOut(event);
+  }
+  getColor(key) {
+    return key == "Yes" ? this.activePlot.color : key == "No" ? "#aaa" : `url(#${this.id}_diagonalHatch)`;
+  }
+  renderLikertBar(dict, y, height, tw) {
+    const itemG = this.dom.mainG.append("g");
+    let total = 0;
+    for (const key in dict) total += dict[key];
+    const key2num = {};
+    for (const key in tw.term.values) {
+      const category = tw.term.values[key].label.toUpperCase();
+      key2num[category] = Number(key);
+    }
+    let x = 0;
+    const keys = Object.keys(dict).sort((a, b) => key2num[a.toUpperCase()] - key2num[b.toUpperCase()]);
+    for (const key of keys) {
+      this.categories.add(key);
+      const width = this.renderCategory(key, dict, itemG, x, height, total);
+      x += width;
+    }
+    const text = getText(tw.term.details || tw.term.name);
+    const textG = this.dom.svg.append("g").attr("transform", `translate(0, ${y + this.shiftTop})`);
+    textG.append("text").text(text).attr("y", height * 2 / 3).style("font-size", "0.85em").on("mouseenter", (event) => this.showText(event, tw.term.name)).on("mouseleave", () => this.tip.hide());
+    itemG.attr("transform", `translate(0, ${y})`);
+  }
+  renderCategory(category, dict, itemG, x, height, total, showPercent = false) {
+    const key = category.toUpperCase();
+    const module = this.module;
+    const colorMap = this.state.termdbConfig.colorMap;
+    const color = colorMap[module][key] || colorMap["*"][key];
+    const entry = Object.entries(dict).find((k) => k[0].toUpperCase() == key);
+    if (!entry) return 0;
+    const value = entry[1];
+    this.categories.add(category);
+    const percent = value / total * 100;
+    const width = percent / 100 * this.settings.svgw;
+    itemG.append("rect").attr("x", x).attr("width", width).attr("height", height).attr("stroke", "gray").attr("stroke-width", 0.5).attr("stroke-opacity", 0.5).attr("fill", color).datum({ key: category, value: percent, color }).on("mouseover", (event) => this.onMouseOver(event));
+    if (showPercent)
+      itemG.append("text").text(`${roundValueAuto(percent, true, 1)}%`).style("font-size", "0.8em").attr("x", x + width + 10).attr("y", height * 0.6);
+    return width;
+  }
+  renderYesNoBar(percents, y, height, scPercentKeys) {
+    const percentsOrdered = Object.keys(percents).sort((a, b) => -a.localeCompare(b));
+    const total = Object.values(percents).reduce((a, b) => a + b, 0);
+    let x = 0;
+    for (const key of percentsOrdered) {
+      const color = this.getColor(key);
+      const value = percents[key];
+      const width = value / total * this.settings.svgw;
+      const percent = value / total * 100;
+      this.dom.mainG.append("rect").attr("x", x).attr("y", y).attr("width", width).attr("height", height).attr("stroke", "gray").attr("fill", color).datum({ key, value: percent, color });
+      if (scPercentKeys.includes(key)) {
+        const arrowX = x + width / 2;
+        const arrowSize = 6;
+        this.dom.mainG.append("polygon").attr(
+          "points",
+          `${arrowX},${y} ${arrowX - arrowSize},${y - arrowSize * 1.5} ${arrowX + arrowSize},${y - arrowSize * 1.5}`
+        ).attr("fill", "#c0392b").attr("pointer-events", "none");
+        this.dom.mainG.append("text").text(`SC ${roundValueAuto(percent, true, 1)}%`).style("font-size", "0.7em").style("fill", "#c0392b").attr("font-weight", "bold").attr("text-anchor", "middle").attr("x", arrowX).attr("y", y - arrowSize * 1.5 - 3).attr("pointer-events", "none");
+      }
+      x += width;
+    }
+  }
+  renderLines(y) {
+    const width = this.settings.svgw;
+    const color = "lightgray";
+    const opacity = 0.5;
+    const bins = 4;
+    const size = width / bins;
+    let x;
+    const gridG = this.dom.gridG;
+    for (let i = 0; i <= bins; i++) {
+      x = i * size;
+      gridG.append("line").attr("x1", x).attr("x2", x).attr("y1", 0).attr("y2", y).style("stroke", color).style("stroke-opacity", opacity).style("stroke-dasharray", "5, 5");
+    }
+  }
+  drawLegendRect(x, y, text, legendG, isYesNo = false) {
+    const key = text.toUpperCase();
+    const colorMap = this.state.termdbConfig.colorMap;
+    const color = isYesNo ? this.getColor(text) : colorMap[this.module][key] || colorMap["*"][key] || colorMap["*"][text];
+    const size = 20;
+    const gap = 15;
+    const itemG = legendG.append("g").attr("transform", `translate(${x}, ${y})`);
+    itemG.append("rect").attr("x", 0).attr("y", 0).attr("width", size).attr("height", size).attr("fill", color).attr("stroke", "gray").attr("stroke-width", 0.5).attr("stroke-opacity", 0.5).attr("pointer-events", "none");
+    const label = itemG.append("text").attr("transform", `translate(${size + gap}, ${size / 2})`).attr("dominant-baseline", "central").style("font-size", "0.85em").text(text);
+    const labelWidth = label.node().getBBox().width;
+    return size + gap + labelWidth + gap;
+  }
+  showText(event, text, size = 110) {
+    if (text.length <= size) return;
+    const menu = this.tip.clear();
+    menu.d.style("padding", "5px").text(text);
+    menu.showunder(event.target);
+  }
+  getPercentageDict(tw) {
+    return this.data.term2Score[tw.term.id];
+  }
+};
+async function getPlotConfig(opts, app, _activeCohort) {
+  const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
+  const formsConfig = await getProfilePlotConfig(activeCohort, app, opts);
+  let config = formsConfig;
+  config.settings = getDefaultProfileFormsSettings();
+  config.headerTitle = "Templates: Visualization tools to provide insights and assist in leveraging data";
+  config = copyMerge(structuredClone(config), opts);
+  for (const plot of config.options) {
+    if (plot.terms) await fillTwLst(plot.terms, app.vocabApi);
+  }
+  return config;
+}
+function getDefaultProfileFormsSettings() {
+  const settings = {
+    controls: {
+      isOpen: false
+    },
+    profileForms: { svgw: 420, svgh: 480 }
+  };
+  const profilePlotSettings = getDefaultProfilePlotSettings();
+  settings.profileForms = copyMerge(settings.profileForms, profilePlotSettings);
+  return settings;
+}
+var profileFormsInit = getCompInit(profileForms);
+var componentInit = profileFormsInit;
+function getText(name, size = 110) {
+  if (name.length > size) name = name.slice(0, size) + "...";
+  return name;
+}
+export {
+  componentInit,
+  getDefaultProfileFormsSettings,
+  getPlotConfig,
+  profileForms,
+  profileFormsInit
+};
+//# sourceMappingURL=profileForms-RA7XQ2QT.js.map

package/dist/profilePlot-4BM3XZVK.js

@@ -0,0 +1,52 @@
+import {
+  ABBREV_COHORT,
+  FULL_COHORT,
+  clearLocalFilters,
+  getDefaultProfilePlotSettings,
+  getProfileLogin,
+  getProfilePlotConfig,
+  loadFilterTerms,
+  makeChartBtnMenu,
+  profilePlot
+} from "./chunk-E4JDHA3C.js";
+import "./chunk-2YC6ZVE4.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-RYCOJY7M.js";
+import "./chunk-HYOEWQ5P.js";
+import "./chunk-FN5XPUPH.js";
+import "./chunk-G6O3URDN.js";
+import "./chunk-LSEFWW72.js";
+import "./chunk-KWM6B3NL.js";
+import "./chunk-UCLS2SVB.js";
+import "./chunk-I55NLUCQ.js";
+import "./chunk-MVTCBVSX.js";
+import "./chunk-2K5DSRBJ.js";
+import "./chunk-X4NI4JLQ.js";
+import "./chunk-L4QG7XZE.js";
+import "./chunk-DQC5FFGV.js";
+import "./chunk-UWYCEYML.js";
+import "./chunk-7UHUOC6F.js";
+import "./chunk-ZYY54HBU.js";
+import "./chunk-EGWVYY7K.js";
+import "./chunk-AMYSEKPF.js";
+import "./chunk-TV74I3Y5.js";
+import "./chunk-KSGA62R2.js";
+import "./chunk-LOZEKOES.js";
+import "./chunk-TOU7EVFQ.js";
+import "./chunk-OAWQ6LOO.js";
+import "./chunk-KYBIQBXE.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-OMR2DT66.js";
+import "./chunk-HFNDKYVF.js";
+export {
+  ABBREV_COHORT,
+  FULL_COHORT,
+  clearLocalFilters,
+  getDefaultProfilePlotSettings,
+  getProfileLogin,
+  getProfilePlotConfig,
+  loadFilterTerms,
+  makeChartBtnMenu,
+  profilePlot
+};
+//# sourceMappingURL=profilePlot-4BM3XZVK.js.map