@sjcrh/proteinpaint-client 2.184.0 → 2.185.0

package/dist/barchart2-QMKEN6MN.js

@@ -0,0 +1,309 @@
+import {
+  ABBREV_COHORT,
+  FULL_COHORT,
+  getDefaultProfilePlotSettings,
+  getProfilePlotConfig,
+  profilePlot
+} from "./chunk-4JVNATQR.js";
+import {
+  fillTwLst
+} from "./chunk-YWUVCXFS.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-3QBZ2Y77.js";
+import "./chunk-HYOEWQ5P.js";
+import "./chunk-FN5XPUPH.js";
+import "./chunk-G6O3URDN.js";
+import "./chunk-LSEFWW72.js";
+import "./chunk-KWM6B3NL.js";
+import "./chunk-UCLS2SVB.js";
+import {
+  dofetch3
+} from "./chunk-6ZCHECOT.js";
+import {
+  copyMerge,
+  getCompInit
+} from "./chunk-MVTCBVSX.js";
+import "./chunk-2K5DSRBJ.js";
+import "./chunk-X4NI4JLQ.js";
+import "./chunk-L4QG7XZE.js";
+import "./chunk-DQC5FFGV.js";
+import "./chunk-UWYCEYML.js";
+import "./chunk-7UHUOC6F.js";
+import "./chunk-ZYY54HBU.js";
+import "./chunk-EGWVYY7K.js";
+import "./chunk-AMYSEKPF.js";
+import "./chunk-TV74I3Y5.js";
+import "./chunk-KSGA62R2.js";
+import {
+  axisTop
+} from "./chunk-LOZEKOES.js";
+import "./chunk-TOU7EVFQ.js";
+import {
+  linear
+} from "./chunk-OAWQ6LOO.js";
+import "./chunk-KYBIQBXE.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-OMR2DT66.js";
+import "./chunk-HFNDKYVF.js";
+
+// plots/profile/barchart2.ts
+var stepx = 500;
+var barwidth = 400;
+var ProfileBarchart2 = class extends profilePlot {
+  constructor(opts) {
+    super(opts, "profileBarchart2");
+    this.rowCount = 0;
+    this.additionalInputs = [];
+  }
+  static {
+    this.type = "profileBarchart2";
+  }
+  async init(appState) {
+    await super.init(appState);
+    const config = appState.plots.find((p) => p.id === this.id);
+    this.componentNames = config.plotByComponent.map((elem) => ({
+      value: elem.profileComponent.name,
+      label: elem.profileComponent.name
+    }));
+    const profileComponentInput = {
+      label: "Component",
+      type: "dropdown",
+      chartType: "profileBarchart2",
+      options: this.componentNames,
+      settingsKey: "profileComponent",
+      callback: (value) => this.setProfileComponent(value)
+    };
+    this.additionalInputs.push(profileComponentInput);
+  }
+  setProfileComponent(value) {
+    this.settings.profileComponent = value;
+    this.app.dispatch({ type: "plot_edit", id: this.id, config: this.config });
+  }
+  async main() {
+    try {
+      await super.main();
+      this.configProfileComponent = this.config.plotByComponent.find((comp) => comp.profileComponent.name == this.settings.profileComponent) || this.config.plotByComponent[0];
+      this.rowCount = 0;
+      this.scoreTerms = [];
+      for (const group of this.configProfileComponent.groups)
+        for (const row of group.rows) {
+          this.rowCount++;
+          if (row.term1) this.scoreTerms.push(row.term1);
+          if (row.term2) this.scoreTerms.push(row.term2);
+        }
+      await this.setControls(this.additionalInputs);
+      this.profileComponent = this.settings.profileComponent || this.componentNames[0].value;
+      this.plot();
+    } catch (e) {
+      console.error(e);
+      throw `${e} [profileBarchart2 main()]`;
+    }
+  }
+  /**
+   * Override setControls() to fetch data from the dedicated barchart2 route.
+   * The base class setControls() builds filter UI and sets this.filter but
+   * skips the data fetch for profileBarchart2 (see profilePlot.ts).
+   * This method calls termdb/profileBarchart2Scores, which derives the facility
+   * term server-side and returns aggregated (median) percentages.
+   */
+  async setControls(additionalInputs = []) {
+    await super.setControls(additionalInputs);
+    this.data = await this.fetchAggregatedScores();
+    if (this.data && "error" in this.data) throw this.data.error;
+  }
+  async fetchAggregatedScores() {
+    return dofetch3("termdb/profileBarchart2Scores", {
+      body: {
+        genome: this.state.vocab.genome,
+        dslabel: this.state.vocab.dslabel,
+        scoreTerms: this.scoreTerms.map((t) => ({
+          score: { term: { id: t.score.term.id }, q: t.score.q },
+          maxScore: typeof t.maxScore === "number" ? t.maxScore : { term: { id: t.maxScore.term.id }, q: t.maxScore.q }
+        })),
+        filterByUserSites: this.settings?.filterByUserSites,
+        filter: this.filter
+      }
+    });
+  }
+  onMouseOut(event) {
+    if (event.target.tagName == "rect" && event.target.getAttribute("fill-opacity") == 0.3) {
+      event.target.setAttribute("fill-opacity", 0);
+    }
+  }
+  onMouseOver(event) {
+    if (event.target.tagName == "rect" && event.target.getAttribute("fill-opacity") == 0) {
+      event.target.setAttribute("fill-opacity", 0.3);
+    }
+  }
+  plot() {
+    const { hasSubjectiveData } = this.createSvg();
+    this.drawTitleAndDefs(hasSubjectiveData);
+    this.drawColumnHeaders(hasSubjectiveData);
+    const yEnd = this.drawComponentRows(hasSubjectiveData);
+    this.drawGuideLines(yEnd, hasSubjectiveData);
+    this.drawLegend(yEnd, hasSubjectiveData);
+  }
+  createSvg() {
+    const hasSubjectiveData = this.configProfileComponent.hasSubjectiveData;
+    const width = this.state.activeCohort == ABBREV_COHORT ? 1e3 : 1300;
+    const height = this.rowCount * 32 + 450;
+    this.dom.svg = this.dom.plotDiv.append("svg").attr("width", width).attr("height", height);
+    return { width, height, hasSubjectiveData };
+  }
+  drawTitleAndDefs(_hasSubjectiveData) {
+    const title = this.state.activeCohort == ABBREV_COHORT ? `Score-based Results for the ${this.profileComponent} Component by Module and Domain Compared with End-User Impression` : `Objective ${this.profileComponent == "Patients and Outcomes" ? "" : "and Subjective "}Score-based Results for the ${this.profileComponent} Component by Module and Domain`;
+    this.dom.svg.append("text").attr("transform", `translate(50, 30)`).attr("font-weight", "bold").text(`${title} (v2)`);
+    const color = this.configProfileComponent.profileComponent.color;
+    this.dom.svg.append("defs").append("pattern").attr("id", `${this.id}_diagonalHatch`).attr("patternUnits", "userSpaceOnUse").attr("width", 4).attr("height", 4).append("path").attr("d", "M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2").attr("stroke-width", 1).attr("stroke", color);
+  }
+  drawColumnHeaders(hasSubjectiveData) {
+    const svg = this.dom.svg;
+    const config = this.config;
+    for (const [i, c] of config.columnNames.entries()) {
+      if (i == 1 && !hasSubjectiveData) break;
+      const x = (i % 2 == 0 ? 400 : 900) + 10;
+      const y = 70;
+      svg.append("text").attr("transform", `translate(${x}, ${y})`).attr("text-anchor", "start").style("font-weight", "bold").text(c);
+      this.drawAxis(x, y + 30);
+    }
+  }
+  drawAxis(x, y) {
+    const xAxisScale = linear().domain([0, 100]).range([0, barwidth]);
+    this.dom.svg.append("g").attr("transform", `translate(${x}, ${y})`).call(axisTop(xAxisScale));
+  }
+  drawComponentRows(hasSubjectiveData) {
+    const svg = this.dom.svg;
+    const step = 30;
+    let y = 70;
+    for (const group of this.configProfileComponent.groups) {
+      svg.append("text").attr("transform", `translate(${50}, ${y + 40})`).attr("text-anchor", "start").text(`${group.label}`).style("font-weight", "bold");
+      y += step + 20;
+      for (const row of group.rows) {
+        const g = svg.append("g");
+        g.append("rect").attr("transform", `translate(${20}, ${y - 6})`).attr("x", 0).attr("y", 0).attr("width", hasSubjectiveData ? 1500 : 850).attr("height", 30).attr("fill", "#f8d335").attr("fill-opacity", 0);
+        const x = 400;
+        if (row.term1) this.drawRect(x, y, row, "term1", g);
+        if (row.term2) this.drawRect(x + stepx, y, row, "term2", g);
+        y += step;
+      }
+    }
+    return y;
+  }
+  drawRect(x, y, row, field, g) {
+    const hasSubjectiveData = this.configProfileComponent.hasSubjectiveData;
+    const d = row[field];
+    let subjectiveTerm = false;
+    if ((row.name == "Total Module" || row.name == "End-user Impression*") && !row.term2) subjectiveTerm = true;
+    const termColor = d.score.term.color;
+    const value = this.getPercentage(d);
+    const isFirst = field == "term1" || field == "term2" && !row.term1;
+    const pairValue = field == "term1" ? this.getPercentage(row.term2) : this.getPercentage(row.term1);
+    const width = value ? value / 100 * barwidth : 0;
+    if (value) {
+      const isObjective = this.state.activeCohort == FULL_COHORT && this.settings.profileComponent == "Patients and Outcomes" ? true : !subjectiveTerm && (pairValue || !hasSubjectiveData);
+      const rect = g.append("rect").attr("transform", `translate(${x + 10}, ${y})`).attr("pointer-events", "none").attr("x", 0).attr("y", 0).attr("width", width).attr("height", 20);
+      if (isObjective) rect.attr("fill", termColor);
+      else {
+        const termid = this.id + d.score.term.id;
+        g.append("defs").append("pattern").attr("id", termid).attr("patternUnits", "userSpaceOnUse").attr("width", 4).attr("height", 4).append("path").attr("d", "M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2").attr("stroke-width", 1).attr("stroke", termColor);
+        rect.attr("fill", `url(#${termid})`);
+      }
+    }
+    const text = g.append("text").attr("pointer-events", "none").attr("text-anchor", "end").text(`${value || 0}%`);
+    if (width > 0) text.attr("transform", `translate(${x + width + 55}, ${y + 15})`);
+    else if (!pairValue && field == "term1") text.attr("transform", `translate(${x + 35}, ${y + 15})`);
+    if (isFirst)
+      g.append("text").attr("transform", `translate(${field == "term1" ? x : x - stepx}, ${y + 15})`).attr("text-anchor", "end").text(row.name).attr("pointer-events", "none");
+  }
+  drawGuideLines(yEnd, hasSubjectiveData) {
+    this.drawGuide(410, 120, 50, yEnd, "B");
+    this.drawGuide(410, 120, 75, yEnd, "A");
+    if (!hasSubjectiveData) return;
+    this.drawGuide(910, 120, 50, yEnd, "B");
+    this.drawGuide(910, 120, 75, yEnd, "A");
+  }
+  drawGuide(x, y, percent, y2, text) {
+    const svg = this.dom.svg;
+    const x1 = x + percent / 100 * barwidth;
+    svg.append("line").style("stroke", "#aaa").style("stroke-width", 1).style("stroke-dasharray", "5, 5").attr("x1", x1).attr("y1", y).attr("x2", x1).attr("y2", y2);
+    svg.append("text").attr("transform", `translate(${x1 + 0.125 * barwidth}, ${y2 + 20})`).attr("text-anchor", "middle").text(text).style("font-weight", "bold");
+    if (percent == 50)
+      svg.append("text").attr("transform", `translate(${x1 - 0.25 * barwidth}, ${y2 + 20})`).attr("text-anchor", "middle").text("C").style("font-weight", "bold");
+  }
+  drawLegend(yEnd, hasSubjectiveData) {
+    this.legendG = this.dom.svg.append("g").attr("data-testid", "sjpp-profileBarchart2-legend").attr("transform", `translate(400,${yEnd + 90})`);
+    this.filterG = this.dom.svg.append("g").attr("transform", `translate(0,${yEnd + 90})`);
+    if (!this.isComparison) {
+      this.legendG.append("text").attr("text-anchor", "left").style("font-weight", "bold").text("Overall Score").attr("transform", `translate(0, -5)`);
+      this.addLegendItem("A", "More than 75% of possible scorable items", 1);
+      this.addLegendItem("B", "50-75% of possible scorable items", 2);
+      this.addLegendItem("C", "Less than 50% of possible scorable items", 3);
+      if (this.state.activeCohort == ABBREV_COHORT) {
+        this.addEndUserImpressionNote(this.legendG.append("g"));
+      } else this.addPOCNote(this.legendG.append("g"));
+    }
+    this.addFilterLegend();
+    if (!hasSubjectiveData) return;
+    const color = this.configProfileComponent.profileComponent.color;
+    const svg = this.dom.svg;
+    const y = yEnd + 40;
+    let x = 600;
+    const lineG = svg.append("g");
+    this.drawLegendRect(x, y, "and", color, lineG);
+    x += 300;
+    this.drawLegendRect(x, y, "or", color, lineG);
+  }
+  drawLegendRect(x, y, operator, color, lineG) {
+    const rect = lineG.append("g").attr("transform", `translate(${x}, ${y})`).append("rect").attr("x", 0).attr("y", 0).attr("width", 20).attr("height", 20);
+    if (operator == "and") rect.attr("fill", color);
+    else rect.attr("fill", `url(#${this.id}_diagonalHatch)`);
+    const text = this.dom.svg.append("text").attr("transform", `translate(${x + 25}, ${y + 15})`).attr("text-anchor", "start").text("Objective ");
+    text.append("tspan").attr("font-weight", "bold").text(operator);
+    text.append("tspan").text(" Subjective data");
+  }
+};
+async function getPlotConfig(opts, app, _activeCohort) {
+  try {
+    const activeCohort = _activeCohort === void 0 ? app.getState().activeCohort : _activeCohort;
+    const defaults = await getProfilePlotConfig(activeCohort, app, opts);
+    if (!defaults) throw "default config not found in termdbConfig.plotConfigByCohort.profileBarchart2";
+    defaults.settings = { profileBarchart2: getDefaultProfilePlotSettings() };
+    let config = structuredClone(defaults);
+    config = copyMerge(config, opts);
+    config.settings.controls = { isOpen: false };
+    const twlst = [];
+    for (const profileComponent of config.plotByComponent) {
+      profileComponent.hasSubjectiveData = false;
+      for (const group of profileComponent.groups)
+        for (const row of group.rows) {
+          if (row.term1) {
+            row.term1.score.q = row.term1.maxScore.q = { mode: "continuous" };
+            twlst.push(row.term1.score);
+            twlst.push(row.term1.maxScore);
+          }
+          if (row.term2) {
+            row.term2.score.q = row.term2.maxScore.q = { mode: "continuous" };
+            twlst.push(row.term2.score);
+            twlst.push(row.term2.maxScore);
+          }
+          if (row.term1 && row.term2) profileComponent.hasSubjectiveData = true;
+        }
+    }
+    await fillTwLst(twlst, app.vocabApi);
+    return config;
+  } catch (e) {
+    throw `${e} [profileBarchart2 getPlotConfig()]`;
+  }
+}
+var profileBarchart2Init = getCompInit(ProfileBarchart2);
+var componentInit = profileBarchart2Init;
+function getDefaultProfileBarchart2Settings() {
+  return {};
+}
+export {
+  componentInit,
+  getDefaultProfileBarchart2Settings,
+  getPlotConfig,
+  profileBarchart2Init
+};
+//# sourceMappingURL=barchart2-QMKEN6MN.js.map

package/dist/barchart2-QMKEN6MN.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/profile/barchart2.ts"],
+  "sourcesContent": ["import { getCompInit, copyMerge } from '#rx'\nimport { fillTwLst } from '#termsetting'\nimport { scaleLinear as d3Linear } from 'd3-scale'\nimport { axisTop } from 'd3-axis'\nimport { dofetch3 } from '#common/dofetch'\nimport {\n\tprofilePlot,\n\tgetDefaultProfilePlotSettings,\n\tgetProfilePlotConfig,\n\tFULL_COHORT,\n\tABBREV_COHORT\n} from './profilePlot.js'\n\n/*\nprofileBarchart2 \u2014 redesigned bar chart that establishes the per-plot dedicated\nroute architecture for the bar chart (following profilePolar2's lead).\n\nKey differences from profileBarchart:\n  - Dedicated server route: termdb/profileBarchart2Scores.\n  - Server-side facility term derivation: client does not send facilityTW.\n  - Always aggregated: median percentage across eligible sites.\n  - Minimal client payload: scoreTerms stripped to { term: { id }, q }.\n  - Public role: sites is always [] in the response.\n  - Cleaner rendering structure: plot() split into focused private methods.\n*/\n\nconst stepx = 500\nconst barwidth = 400\n\nclass ProfileBarchart2 extends profilePlot {\n\tstatic type = 'profileBarchart2'\n\tadditionalInputs: any[]\n\tcomponentNames!: { value: string; label: string }[]\n\tconfigProfileComponent: any\n\trowCount: number = 0\n\tprofileComponent!: string\n\n\tconstructor(opts) {\n\t\tsuper(opts, 'profileBarchart2')\n\t\tthis.additionalInputs = []\n\t}\n\n\tasync init(appState) {\n\t\tawait super.init(appState)\n\t\tconst config = appState.plots.find(p => p.id === this.id)\n\t\tthis.componentNames = config.plotByComponent.map(elem => ({\n\t\t\tvalue: elem.profileComponent.name,\n\t\t\tlabel: elem.profileComponent.name\n\t\t}))\n\t\tconst profileComponentInput = {\n\t\t\tlabel: 'Component',\n\t\t\ttype: 'dropdown',\n\t\t\tchartType: 'profileBarchart2',\n\t\t\toptions: this.componentNames,\n\t\t\tsettingsKey: 'profileComponent',\n\t\t\tcallback: value => this.setProfileComponent(value)\n\t\t}\n\t\tthis.additionalInputs.push(profileComponentInput)\n\t}\n\n\tsetProfileComponent(value) {\n\t\tthis.settings.profileComponent = value\n\t\tthis.app.dispatch({ type: 'plot_edit', id: this.id, config: this.config })\n\t}\n\n\tasync main() {\n\t\ttry {\n\t\t\tawait super.main()\n\t\t\tthis.configProfileComponent =\n\t\t\t\tthis.config.plotByComponent.find(comp => comp.profileComponent.name == this.settings.profileComponent) ||\n\t\t\t\tthis.config.plotByComponent[0]\n\t\t\tthis.rowCount = 0\n\t\t\tthis.scoreTerms = []\n\t\t\tfor (const group of this.configProfileComponent.groups)\n\t\t\t\tfor (const row of group.rows) {\n\t\t\t\t\tthis.rowCount++\n\t\t\t\t\tif (row.term1) this.scoreTerms.push(row.term1)\n\t\t\t\t\tif (row.term2) this.scoreTerms.push(row.term2)\n\t\t\t\t}\n\t\t\tawait this.setControls(this.additionalInputs)\n\t\t\tthis.profileComponent = this.settings.profileComponent || this.componentNames[0].value\n\t\t\tthis.plot()\n\t\t} catch (e) {\n\t\t\tconsole.error(e)\n\t\t\tthrow `${e} [profileBarchart2 main()]`\n\t\t}\n\t}\n\n\t/**\n\t * Override setControls() to fetch data from the dedicated barchart2 route.\n\t * The base class setControls() builds filter UI and sets this.filter but\n\t * skips the data fetch for profileBarchart2 (see profilePlot.ts).\n\t * This method calls termdb/profileBarchart2Scores, which derives the facility\n\t * term server-side and returns aggregated (median) percentages.\n\t */\n\tasync setControls(additionalInputs: any[] = []) {\n\t\tawait super.setControls(additionalInputs)\n\t\tthis.data = await this.fetchAggregatedScores()\n\t\tif (this.data && 'error' in this.data) throw this.data.error\n\t}\n\n\tprivate async fetchAggregatedScores() {\n\t\t// No facilityTW \u2014 server derives it from term ID prefixes in the request.\n\t\t// scoreTerms stripped to { term: { id }, q } only \u2014 server fills the rest via termjsonByOneid.\n\t\treturn dofetch3('termdb/profileBarchart2Scores', {\n\t\t\tbody: {\n\t\t\t\tgenome: this.state.vocab.genome,\n\t\t\t\tdslabel: this.state.vocab.dslabel,\n\t\t\t\tscoreTerms: this.scoreTerms.map((t: any) => ({\n\t\t\t\t\tscore: { term: { id: t.score.term.id }, q: t.score.q },\n\t\t\t\t\tmaxScore: typeof t.maxScore === 'number' ? t.maxScore : { term: { id: t.maxScore.term.id }, q: t.maxScore.q }\n\t\t\t\t})),\n\t\t\t\tfilterByUserSites: this.settings?.filterByUserSites,\n\t\t\t\tfilter: this.filter\n\t\t\t}\n\t\t})\n\t}\n\n\tonMouseOut(event) {\n\t\tif (event.target.tagName == 'rect' && event.target.getAttribute('fill-opacity') == 0.3) {\n\t\t\tevent.target.setAttribute('fill-opacity', 0)\n\t\t}\n\t}\n\n\tonMouseOver(event) {\n\t\tif (event.target.tagName == 'rect' && event.target.getAttribute('fill-opacity') == 0) {\n\t\t\tevent.target.setAttribute('fill-opacity', 0.3)\n\t\t}\n\t}\n\n\tplot() {\n\t\tconst { hasSubjectiveData } = this.createSvg()\n\t\tthis.drawTitleAndDefs(hasSubjectiveData)\n\t\tthis.drawColumnHeaders(hasSubjectiveData)\n\t\tconst yEnd = this.drawComponentRows(hasSubjectiveData)\n\t\tthis.drawGuideLines(yEnd, hasSubjectiveData)\n\t\tthis.drawLegend(yEnd, hasSubjectiveData)\n\t}\n\n\tprivate createSvg() {\n\t\tconst hasSubjectiveData = this.configProfileComponent.hasSubjectiveData\n\t\tconst width = this.state.activeCohort == ABBREV_COHORT ? 1000 : 1300\n\t\tconst height = this.rowCount * 32 + 450\n\t\tthis.dom.svg = this.dom.plotDiv.append('svg').attr('width', width).attr('height', height)\n\t\treturn { width, height, hasSubjectiveData }\n\t}\n\n\tprivate drawTitleAndDefs(_hasSubjectiveData: boolean) {\n\t\tconst title =\n\t\t\tthis.state.activeCohort == ABBREV_COHORT\n\t\t\t\t? `Score-based Results for the ${this.profileComponent} Component by Module and Domain Compared with End-User Impression`\n\t\t\t\t: `Objective ${\n\t\t\t\t\t\tthis.profileComponent == 'Patients and Outcomes' ? '' : 'and Subjective '\n\t\t\t\t  }Score-based Results for the ${this.profileComponent} Component by Module and Domain`\n\t\tthis.dom.svg.append('text').attr('transform', `translate(50, 30)`).attr('font-weight', 'bold').text(`${title} (v2)`)\n\n\t\tconst color = this.configProfileComponent.profileComponent.color\n\t\tthis.dom.svg\n\t\t\t.append('defs')\n\t\t\t.append('pattern')\n\t\t\t.attr('id', `${this.id}_diagonalHatch`)\n\t\t\t.attr('patternUnits', 'userSpaceOnUse')\n\t\t\t.attr('width', 4)\n\t\t\t.attr('height', 4)\n\t\t\t.append('path')\n\t\t\t.attr('d', 'M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2')\n\t\t\t.attr('stroke-width', 1)\n\t\t\t.attr('stroke', color)\n\t}\n\n\tprivate drawColumnHeaders(hasSubjectiveData: boolean) {\n\t\tconst svg = this.dom.svg\n\t\tconst config = this.config\n\t\tfor (const [i, c] of config.columnNames.entries()) {\n\t\t\tif (i == 1 && !hasSubjectiveData) break\n\t\t\tconst x = (i % 2 == 0 ? 400 : 900) + 10\n\t\t\tconst y = 70\n\t\t\tsvg\n\t\t\t\t.append('text')\n\t\t\t\t.attr('transform', `translate(${x}, ${y})`)\n\t\t\t\t.attr('text-anchor', 'start')\n\t\t\t\t.style('font-weight', 'bold')\n\t\t\t\t.text(c)\n\t\t\tthis.drawAxis(x, y + 30)\n\t\t}\n\t}\n\n\tprivate drawAxis(x: number, y: number) {\n\t\tconst xAxisScale = d3Linear().domain([0, 100]).range([0, barwidth])\n\t\tthis.dom.svg.append('g').attr('transform', `translate(${x}, ${y})`).call(axisTop(xAxisScale))\n\t}\n\n\tprivate drawComponentRows(hasSubjectiveData: boolean): number {\n\t\tconst svg = this.dom.svg\n\t\tconst step = 30\n\t\tlet y = 70\n\t\tfor (const group of this.configProfileComponent.groups) {\n\t\t\tsvg\n\t\t\t\t.append('text')\n\t\t\t\t.attr('transform', `translate(${50}, ${y + 40})`)\n\t\t\t\t.attr('text-anchor', 'start')\n\t\t\t\t.text(`${group.label}`)\n\t\t\t\t.style('font-weight', 'bold')\n\n\t\t\ty += step + 20\n\t\t\tfor (const row of group.rows) {\n\t\t\t\tconst g = svg.append('g')\n\t\t\t\tg.append('rect')\n\t\t\t\t\t.attr('transform', `translate(${20}, ${y - 6})`)\n\t\t\t\t\t.attr('x', 0)\n\t\t\t\t\t.attr('y', 0)\n\t\t\t\t\t.attr('width', hasSubjectiveData ? 1500 : 850)\n\t\t\t\t\t.attr('height', 30)\n\t\t\t\t\t.attr('fill', '#f8d335')\n\t\t\t\t\t.attr('fill-opacity', 0)\n\t\t\t\tconst x = 400\n\t\t\t\tif (row.term1) this.drawRect(x, y, row, 'term1', g)\n\t\t\t\tif (row.term2) this.drawRect(x + stepx, y, row, 'term2', g)\n\t\t\t\ty += step\n\t\t\t}\n\t\t}\n\t\treturn y\n\t}\n\n\tprivate drawRect(x: number, y: number, row: any, field: 'term1' | 'term2', g: any) {\n\t\tconst hasSubjectiveData = this.configProfileComponent.hasSubjectiveData\n\t\tconst d = row[field]\n\t\tlet subjectiveTerm = false\n\t\tif ((row.name == 'Total Module' || row.name == 'End-user Impression*') && !row.term2) subjectiveTerm = true\n\t\tconst termColor = d.score.term.color\n\t\tconst value = this.getPercentage(d)\n\t\tconst isFirst = field == 'term1' || (field == 'term2' && !row.term1)\n\t\tconst pairValue = field == 'term1' ? this.getPercentage(row.term2) : this.getPercentage(row.term1)\n\t\tconst width = value ? (value / 100) * barwidth : 0\n\t\tif (value) {\n\t\t\tconst isObjective =\n\t\t\t\tthis.state.activeCohort == FULL_COHORT && this.settings.profileComponent == 'Patients and Outcomes'\n\t\t\t\t\t? true\n\t\t\t\t\t: !subjectiveTerm && (pairValue || !hasSubjectiveData)\n\t\t\tconst rect = g\n\t\t\t\t.append('rect')\n\t\t\t\t.attr('transform', `translate(${x + 10}, ${y})`)\n\t\t\t\t.attr('pointer-events', 'none')\n\t\t\t\t.attr('x', 0)\n\t\t\t\t.attr('y', 0)\n\t\t\t\t.attr('width', width)\n\t\t\t\t.attr('height', 20)\n\t\t\tif (isObjective) rect.attr('fill', termColor)\n\t\t\telse {\n\t\t\t\tconst termid = this.id + d.score.term.id\n\t\t\t\tg.append('defs')\n\t\t\t\t\t.append('pattern')\n\t\t\t\t\t.attr('id', termid)\n\t\t\t\t\t.attr('patternUnits', 'userSpaceOnUse')\n\t\t\t\t\t.attr('width', 4)\n\t\t\t\t\t.attr('height', 4)\n\t\t\t\t\t.append('path')\n\t\t\t\t\t.attr('d', 'M-1,1 l2,-2 M0,4 l4,-4 M3,5 l2,-2')\n\t\t\t\t\t.attr('stroke-width', 1)\n\t\t\t\t\t.attr('stroke', termColor)\n\t\t\t\trect.attr('fill', `url(#${termid})`)\n\t\t\t}\n\t\t}\n\t\tconst text = g\n\t\t\t.append('text')\n\t\t\t.attr('pointer-events', 'none')\n\t\t\t.attr('text-anchor', 'end')\n\t\t\t.text(`${value || 0}%`)\n\t\tif (width > 0) text.attr('transform', `translate(${x + width + 55}, ${y + 15})`)\n\t\telse if (!pairValue && field == 'term1') text.attr('transform', `translate(${x + 35}, ${y + 15})`)\n\n\t\tif (isFirst)\n\t\t\tg.append('text')\n\t\t\t\t.attr('transform', `translate(${field == 'term1' ? x : x - stepx}, ${y + 15})`)\n\t\t\t\t.attr('text-anchor', 'end')\n\t\t\t\t.text(row.name)\n\t\t\t\t.attr('pointer-events', 'none')\n\t}\n\n\tprivate drawGuideLines(yEnd: number, hasSubjectiveData: boolean) {\n\t\tthis.drawGuide(410, 120, 50, yEnd, 'B')\n\t\tthis.drawGuide(410, 120, 75, yEnd, 'A')\n\t\tif (!hasSubjectiveData) return\n\t\tthis.drawGuide(910, 120, 50, yEnd, 'B')\n\t\tthis.drawGuide(910, 120, 75, yEnd, 'A')\n\t}\n\n\tprivate drawGuide(x: number, y: number, percent: number, y2: number, text: string) {\n\t\tconst svg = this.dom.svg\n\t\tconst x1 = x + (percent / 100) * barwidth\n\t\tsvg\n\t\t\t.append('line')\n\t\t\t.style('stroke', '#aaa')\n\t\t\t.style('stroke-width', 1)\n\t\t\t.style('stroke-dasharray', '5, 5')\n\t\t\t.attr('x1', x1)\n\t\t\t.attr('y1', y)\n\t\t\t.attr('x2', x1)\n\t\t\t.attr('y2', y2)\n\t\tsvg\n\t\t\t.append('text')\n\t\t\t.attr('transform', `translate(${x1 + 0.125 * barwidth}, ${y2 + 20})`)\n\t\t\t.attr('text-anchor', 'middle')\n\t\t\t.text(text)\n\t\t\t.style('font-weight', 'bold')\n\t\tif (percent == 50)\n\t\t\tsvg\n\t\t\t\t.append('text')\n\t\t\t\t.attr('transform', `translate(${x1 - 0.25 * barwidth}, ${y2 + 20})`)\n\t\t\t\t.attr('text-anchor', 'middle')\n\t\t\t\t.text('C')\n\t\t\t\t.style('font-weight', 'bold')\n\t}\n\n\tprivate drawLegend(yEnd: number, hasSubjectiveData: boolean) {\n\t\tthis.legendG = this.dom.svg\n\t\t\t.append('g')\n\t\t\t.attr('data-testid', 'sjpp-profileBarchart2-legend')\n\t\t\t.attr('transform', `translate(400,${yEnd + 90})`)\n\t\tthis.filterG = this.dom.svg.append('g').attr('transform', `translate(0,${yEnd + 90})`)\n\n\t\tif (!this.isComparison) {\n\t\t\tthis.legendG\n\t\t\t\t.append('text')\n\t\t\t\t.attr('text-anchor', 'left')\n\t\t\t\t.style('font-weight', 'bold')\n\t\t\t\t.text('Overall Score')\n\t\t\t\t.attr('transform', `translate(0, -5)`)\n\n\t\t\tthis.addLegendItem('A', 'More than 75% of possible scorable items', 1)\n\t\t\tthis.addLegendItem('B', '50-75% of possible scorable items', 2)\n\t\t\tthis.addLegendItem('C', 'Less than 50% of possible scorable items', 3)\n\t\t\tif (this.state.activeCohort == ABBREV_COHORT) {\n\t\t\t\tthis.addEndUserImpressionNote(this.legendG.append('g'))\n\t\t\t} else this.addPOCNote(this.legendG.append('g'))\n\t\t}\n\t\tthis.addFilterLegend()\n\n\t\tif (!hasSubjectiveData) return\n\n\t\tconst color = this.configProfileComponent.profileComponent.color\n\t\tconst svg = this.dom.svg\n\t\tconst y = yEnd + 40\n\t\tlet x = 600\n\t\tconst lineG = svg.append('g')\n\t\tthis.drawLegendRect(x, y, 'and', color, lineG)\n\t\tx += 300\n\t\tthis.drawLegendRect(x, y, 'or', color, lineG)\n\t}\n\n\tdrawLegendRect(x: number, y: number, operator: 'and' | 'or', color: string, lineG: any) {\n\t\tconst rect = lineG\n\t\t\t.append('g')\n\t\t\t.attr('transform', `translate(${x}, ${y})`)\n\t\t\t.append('rect')\n\t\t\t.attr('x', 0)\n\t\t\t.attr('y', 0)\n\t\t\t.attr('width', 20)\n\t\t\t.attr('height', 20)\n\t\tif (operator == 'and') rect.attr('fill', color)\n\t\telse rect.attr('fill', `url(#${this.id}_diagonalHatch)`)\n\n\t\tconst text = this.dom.svg\n\t\t\t.append('text')\n\t\t\t.attr('transform', `translate(${x + 25}, ${y + 15})`)\n\t\t\t.attr('text-anchor', 'start')\n\t\t\t.text('Objective ')\n\t\ttext.append('tspan').attr('font-weight', 'bold').text(operator)\n\t\ttext.append('tspan').text(' Subjective data')\n\t}\n}\n\nexport async function getPlotConfig(opts, app, _activeCohort) {\n\ttry {\n\t\tconst activeCohort = _activeCohort === undefined ? app.getState().activeCohort : _activeCohort\n\t\tconst defaults = await getProfilePlotConfig(activeCohort, app, opts)\n\t\tif (!defaults) throw 'default config not found in termdbConfig.plotConfigByCohort.profileBarchart2'\n\t\tdefaults.settings = { profileBarchart2: getDefaultProfilePlotSettings() }\n\t\tlet config = structuredClone(defaults)\n\t\tconfig = copyMerge(config, opts)\n\t\tconfig.settings.controls = { isOpen: false }\n\t\tconst twlst: any[] = []\n\t\tfor (const profileComponent of config.plotByComponent) {\n\t\t\tprofileComponent.hasSubjectiveData = false\n\t\t\tfor (const group of profileComponent.groups)\n\t\t\t\tfor (const row of group.rows) {\n\t\t\t\t\tif (row.term1) {\n\t\t\t\t\t\trow.term1.score.q = row.term1.maxScore.q = { mode: 'continuous' }\n\t\t\t\t\t\ttwlst.push(row.term1.score)\n\t\t\t\t\t\ttwlst.push(row.term1.maxScore)\n\t\t\t\t\t}\n\t\t\t\t\tif (row.term2) {\n\t\t\t\t\t\trow.term2.score.q = row.term2.maxScore.q = { mode: 'continuous' }\n\t\t\t\t\t\ttwlst.push(row.term2.score)\n\t\t\t\t\t\ttwlst.push(row.term2.maxScore)\n\t\t\t\t\t}\n\t\t\t\t\tif (row.term1 && row.term2) profileComponent.hasSubjectiveData = true\n\t\t\t\t}\n\t\t}\n\t\tawait fillTwLst(twlst, app.vocabApi)\n\n\t\treturn config\n\t} catch (e) {\n\t\tthrow `${e} [profileBarchart2 getPlotConfig()]`\n\t}\n}\n\nexport const profileBarchart2Init = getCompInit(ProfileBarchart2)\n// this alias will allow abstracted dynamic imports\nexport const componentInit = profileBarchart2Init\n\nexport function getDefaultProfileBarchart2Settings() {\n\treturn {}\n}\n"],
+  "mappings": 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+  "names": []
+}

package/dist/bars.renderer-JHCZDSM6.js

@@ -0,0 +1,12 @@
+import {
+  barsRenderer
+} from "./chunk-G6O3URDN.js";
+import "./chunk-LOZEKOES.js";
+import "./chunk-OAWQ6LOO.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-OMR2DT66.js";
+import "./chunk-HFNDKYVF.js";
+export {
+  barsRenderer as default
+};
+//# sourceMappingURL=bars.renderer-JHCZDSM6.js.map