@sjcrh/proteinpaint-client 2.184.0 → 2.185.0

package/dist/sunburst-RDNFBOCK.js

@@ -0,0 +1,282 @@
+import {
+  textlensf
+} from "./chunk-YWUVCXFS.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-3QBZ2Y77.js";
+import "./chunk-HYOEWQ5P.js";
+import "./chunk-FN5XPUPH.js";
+import "./chunk-G6O3URDN.js";
+import "./chunk-LSEFWW72.js";
+import "./chunk-KWM6B3NL.js";
+import "./chunk-UCLS2SVB.js";
+import "./chunk-6ZCHECOT.js";
+import "./chunk-MVTCBVSX.js";
+import "./chunk-2K5DSRBJ.js";
+import "./chunk-X4NI4JLQ.js";
+import "./chunk-L4QG7XZE.js";
+import "./chunk-DQC5FFGV.js";
+import "./chunk-UWYCEYML.js";
+import "./chunk-7UHUOC6F.js";
+import "./chunk-ZYY54HBU.js";
+import "./chunk-EGWVYY7K.js";
+import "./chunk-AMYSEKPF.js";
+import "./chunk-TV74I3Y5.js";
+import {
+  arc_default,
+  category10_default
+} from "./chunk-KSGA62R2.js";
+import "./chunk-LOZEKOES.js";
+import {
+  partition_default,
+  stratify_default
+} from "./chunk-TOU7EVFQ.js";
+import {
+  ordinal
+} from "./chunk-OAWQ6LOO.js";
+import "./chunk-KYBIQBXE.js";
+import {
+  select_default
+} from "./chunk-I6Y4O3RR.js";
+import {
+  rgb
+} from "./chunk-OMR2DT66.js";
+import "./chunk-HFNDKYVF.js";
+
+// src/sunburst.js
+var dur1 = 500;
+var dur2 = 250;
+function sunburst_default(opts) {
+  const {
+    occurrence,
+    boxyoff,
+    boxheight,
+    boxwidth,
+    svgheight,
+    g,
+    pica,
+    cx,
+    cy,
+    nodes,
+    chartlabel,
+    click_ring,
+    click_listbutton
+  } = opts;
+  g.attr("transform", "translate(" + cx + "," + cy + ")");
+  const suncolor = ordinal(category10_default);
+  const eye = g.append("g");
+  const ring = g.append("g");
+  const sun = { g, eye, ring, pica, busy: false, boxyoff, svgheight, cx, cy };
+  const radius = Math.max(boxheight * 0.2, Math.min(boxheight * 0.42, Math.log(occurrence) * 24));
+  if (cx < radius) {
+    sun.cx = radius;
+  } else if (cx + radius > boxwidth) {
+    sun.cx = boxwidth - radius;
+  }
+  if (cy < radius) {
+    sun.cy = radius;
+  } else if (cy + radius > boxheight) {
+    sun.cy = boxheight - radius;
+  }
+  g.transition().delay(dur1 + dur2).attr("transform", "translate(" + sun.cx + "," + sun.cy + ")");
+  const root = stratify_default()(nodes);
+  root.sum((i) => i.value);
+  root.sort((a, b) => b.value - a.value);
+  partition_default().size([1, Math.pow(radius, 2)])(root);
+  eye.append("circle").attr("r", radius).attr("fill", "white").attr("fill-opacity", 0);
+  let emptyspace;
+  const arcfunc = arc_default().startAngle((d) => Math.PI * 2 * d.x0).endAngle((d) => Math.PI * 2 * d.x1).innerRadius((d) => {
+    if (!d.parent) {
+      emptyspace = Math.sqrt(d.y1) - radius / 15;
+      return emptyspace;
+    }
+    return Math.sqrt(d.y0);
+  }).outerRadius((d) => {
+    d.outradius = Math.sqrt(d.y1);
+    return d.outradius;
+  });
+  ring.selectAll().data(root.descendants()).enter().append("path").attr("d", arcfunc).attr("stroke", "white").attr("fill", (d) => {
+    if (!d.parent) {
+      return "white";
+    }
+    let key;
+    if (d.children) {
+      key = d.id;
+    } else {
+      if (!d.parent.parent) {
+        key = d.id;
+      } else {
+        key = d.parent.id;
+      }
+    }
+    const c = suncolor(key);
+    d._color = c;
+    return c;
+  }).on("mouseover", (event, d) => {
+    if (!d.parent) return;
+    if (sun.busy) return;
+    event.target.setAttribute("fill", rgb(d._color).darker(0.5).toString());
+    slicemouseover(d, sun);
+  }).on("mouseout", (event, d) => {
+    pica.g.selectAll("*").remove();
+    if (!d.parent) return;
+    event.target.setAttribute("fill", d._color);
+  }).on("click", async (event, d) => {
+    if (!click_ring) return;
+    if (sun.busy) return;
+    sun.busy = true;
+    await click_ring(event, d);
+    sun.busy = false;
+  });
+  const eyeheight = emptyspace * 2;
+  ring.attr("transform", "scale(.3,.3)").attr("fill-opacity", 0).transition().duration(dur1).attr("transform", "scale(1,1)").attr("fill-opacity", 1).on("end", () => {
+    eye.shutter = eye.append("rect").attr("x", -emptyspace).attr("y", -emptyspace).attr("width", emptyspace * 2).attr("height", 0).attr("fill", "#ededed").on("click", () => remove(sun));
+    eye.shutter.transition().duration(dur2).attr("height", emptyspace * 2).on("end", () => {
+      eye.fore = eye.append("g");
+      const fontsize1 = Math.min(eyeheight / (chartlabel.length * textlensf), emptyspace * 0.6);
+      eye.fore.append("text").text(chartlabel).attr("text-anchor", "middle").attr("dominant-baseline", "central").attr("fill", "#858585").attr("font-weight", "bold").attr("font-family", "Arial").attr("font-size", fontsize1);
+      const fontsize = Math.min(
+        18,
+        Math.min(
+          emptyspace * 0.7 / (occurrence.toString().length * textlensf),
+          (emptyspace - fontsize1 / 2) * 0.7
+        )
+      );
+      eye.fore.append("text").text(occurrence).attr("text-anchor", "middle").attr("fill", "#858585").attr("y", -fontsize1 / 2 - 2).attr("font-family", "Arial").attr("font-size", fontsize);
+      eye.append("rect").attr("x", -emptyspace).attr("y", -emptyspace).attr("width", emptyspace * 2).attr("height", emptyspace * 2).attr("fill", "black").attr("fill-opacity", 0).attr("data-testid", `sjpp-sunburstEye-${chartlabel}`).on("click", () => {
+        if (sun.busy) return;
+        remove(sun);
+      }).on("mousedown", (event) => {
+        event.preventDefault();
+        event.stopPropagation();
+        const mx = event.clientX, my = event.clientY, body = select_default(document.body);
+        let cx0 = sun.cx, cy0 = sun.cy;
+        body.on("mousemove", (event2) => {
+          sun.busy = true;
+          sun.cx = cx0 + event2.clientX - mx;
+          sun.cy = cy0 + event2.clientY - my;
+          g.attr("transform", "translate(" + sun.cx + "," + sun.cy + ")");
+        }).on("mouseup", () => {
+          setTimeout(() => sun.busy = false, 10);
+          body.on("mousemove", null).on("mouseup", null);
+        });
+      });
+      if (click_listbutton) {
+        sun.listbutt = eye.append("g").attr("transform", "translate(0," + fontsize1 / 2 + ")");
+        const listbutt_bg = sun.listbutt.append("rect").attr("x", -eyeheight / 2).attr("width", eyeheight).attr("height", emptyspace - fontsize1 / 2).attr("fill", "#d9d9d9");
+        const listbutt_text = sun.listbutt.append("text").text("Info").attr("y", (emptyspace - fontsize1 / 2) / 2).attr("dominant-baseline", "central").attr("text-anchor", "middle").attr("font-family", "Arial").attr("fill", "#858585").attr("font-size", Math.min(18, fontsize));
+        sun.listbutt.append("rect").classed("sja_info_click", true).attr("data-testid", "sjpp-sunburst-listButton").attr("x", -eyeheight / 2).attr("width", eyeheight).attr("height", emptyspace - fontsize1 / 2).attr("fill-opacity", 0).on("mouseover", () => {
+          listbutt_bg.attr("fill", "#bababa");
+          listbutt_text.attr("fill", "white");
+        }).on("mouseout", () => {
+          listbutt_bg.attr("fill", "#d9d9d9");
+          listbutt_text.attr("fill", "#858585");
+        }).on("click", (event) => {
+          remove(sun);
+          const x = event.clientX - radius, y = event.clientY - radius;
+          setTimeout(() => click_listbutton(x, y), dur1);
+        });
+      }
+    });
+  });
+}
+function remove(sun) {
+  sun.busy = true;
+  if (sun.eye.fore) {
+    sun.eye.fore.remove();
+  }
+  if (sun.listbutt) {
+    sun.listbutt.remove();
+  }
+  if (sun.eye.shutter) {
+    sun.eye.shutter.transition().attr("height", 0).on("end", () => {
+      sun.ring.transition().attr("transform", "scale(.5,.5)").attr("fill-opacity", 0).on("end", () => {
+        sun.g.remove();
+        sun.pica.g.selectAll("*").remove();
+      });
+    });
+  } else {
+    sun.ring.transition().attr("transform", "scale(.5,.5)").attr("fill-opacity", 0).on("end", () => {
+      sun.g.remove();
+      sun.pica.g.selectAll("*").remove();
+    });
+  }
+  sun.pica.g.selectAll("*").remove();
+}
+function slicemouseover(d, sun) {
+  const fontsize = 13;
+  const barheight = 10;
+  const ypad = 1;
+  let toangle = (d.x0 + d.x1) / 2;
+  if (toangle >= 0.375 && toangle <= 0.625) {
+    const yoff = sun.boxyoff + sun.cy + d.outradius;
+    const picaheight = fontsize + ypad + fontsize;
+    if (yoff >= sun.svgheight - 30) {
+      if (toangle <= 0.5) {
+        toangle = Math.max(0.25, d.x0);
+      } else {
+        toangle = Math.min(0.75, d.x1);
+      }
+    }
+  }
+  sun.pica.g.selectAll("*").remove();
+  const x = sun.cx + (d.outradius + 5) * Math.sin(Math.PI * 2 * toangle);
+  const y = sun.cy - (d.outradius + 5) * Math.cos(Math.PI * 2 * toangle);
+  sun.pica.g.attr("transform", "translate(" + x + "," + y + ")");
+  const barwidth = 60;
+  let bar = null;
+  const cohortsize = d.data.cohortsize;
+  if (Number.isFinite(cohortsize)) {
+    bar = sun.pica.g.append("g");
+    bar.append("rect").attr("width", barwidth + 4).attr("height", barheight + 4).attr("fill", "white").attr("shape-rendering", "crispEdges");
+    bar.append("rect").attr("x", 2).attr("y", 2).attr("width", barwidth).attr("height", barheight).attr("fill", "#ECE5FF").attr("shape-rendering", "crispEdges");
+    bar.append("rect").attr("x", 2).attr("y", 2).attr("width", barwidth * Math.min(1, d.value / cohortsize)).attr("height", barheight).attr("fill", "#9F80FF").attr("shape-rendering", "crispEdges");
+  }
+  const text0 = sun.pica.g.append("text").attr("stroke", "white").attr("stroke-width", 3).attr("font-size", fontsize).attr("font-family", "Arial");
+  const text = sun.pica.g.append("text").attr("fill", "black").attr("fill-opacity", 1).attr("font-size", fontsize).attr("font-family", "Arial");
+  const textt = d.data.name + ", " + d.value + " sample" + (d.value > 1 ? "s" : "");
+  text0.text(d.data.name);
+  text.text(d.data.name);
+  const text20 = sun.pica.g.append("text").attr("stroke", "white").attr("stroke-width", 3).attr("font-size", fontsize).attr("font-family", "Arial");
+  const text2 = sun.pica.g.append("text").attr("fill", "black").attr("fill-opacity", 1).attr("font-size", fontsize).attr("font-family", "Arial");
+  const tt = d.value + " sample" + (d.value > 1 ? "s" : "") + (bar ? " (" + cohortsize + " total)" : "");
+  text20.text(tt);
+  text2.text(tt);
+  const textwidth = Math.max(text.node().getBBox().width, text2.node().getBBox().width);
+  if (toangle < 0.25) {
+    text20.attr("y", bar ? -3 - barheight - ypad : 0);
+    text2.attr("y", bar ? -3 - barheight - ypad : 0);
+    text0.attr("y", (bar ? -3 - barheight - ypad : 0) - fontsize - ypad);
+    text.attr("y", (bar ? -3 - barheight - ypad : 0) - fontsize - ypad);
+    if (bar) {
+      bar.attr("transform", "translate(0,-" + barheight + ")");
+    }
+  } else if (toangle < 0.5) {
+    text0.attr("dominant-baseline", "hanging").attr("y", 0);
+    text.attr("dominant-baseline", "hanging").attr("y", 0);
+    text20.attr("dominant-baseline", "hanging").attr("y", ypad + fontsize);
+    text2.attr("dominant-baseline", "hanging").attr("y", ypad + fontsize);
+    if (bar) {
+      bar.attr("transform", "translate(0," + (fontsize + ypad) * 2 + ")");
+    }
+  } else if (toangle < 0.75) {
+    text0.attr("dominant-baseline", "hanging").attr("text-anchor", "end").attr("y", 0);
+    text.attr("dominant-baseline", "hanging").attr("text-anchor", "end").attr("y", 0);
+    text20.attr("dominant-baseline", "hanging").attr("text-anchor", "end").attr("y", ypad + fontsize);
+    text2.attr("dominant-baseline", "hanging").attr("text-anchor", "end").attr("y", ypad + fontsize);
+    if (bar) {
+      bar.attr("transform", "translate(-" + barwidth + "," + (fontsize + ypad) * 2 + ")");
+    }
+  } else {
+    text20.attr("text-anchor", "end").attr("y", bar ? -3 - barheight - ypad : 0);
+    text2.attr("text-anchor", "end").attr("y", bar ? -3 - barheight - ypad : 0);
+    text0.attr("text-anchor", "end").attr("y", (bar ? -3 - barheight - ypad : 0) - fontsize - ypad);
+    text.attr("text-anchor", "end").attr("y", (bar ? -3 - barheight - ypad : 0) - fontsize - ypad);
+    if (bar) {
+      bar.attr("transform", "translate(-" + barwidth + ",-" + barheight + ")");
+    }
+  }
+}
+export {
+  sunburst_default as default
+};
+//# sourceMappingURL=sunburst-RDNFBOCK.js.map

package/dist/survival-BG7QV52L.js

@@ -0,0 +1,44 @@
+import {
+  componentInit,
+  getPlotConfig,
+  survivalInit,
+  t0_t2_defaultQ
+} from "./chunk-HP2BASCY.js";
+import "./chunk-WQ3U6X4Q.js";
+import "./chunk-V2OJLJSK.js";
+import "./chunk-YWUVCXFS.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-3QBZ2Y77.js";
+import "./chunk-HYOEWQ5P.js";
+import "./chunk-FN5XPUPH.js";
+import "./chunk-G6O3URDN.js";
+import "./chunk-LSEFWW72.js";
+import "./chunk-KWM6B3NL.js";
+import "./chunk-UCLS2SVB.js";
+import "./chunk-6ZCHECOT.js";
+import "./chunk-MVTCBVSX.js";
+import "./chunk-2K5DSRBJ.js";
+import "./chunk-X4NI4JLQ.js";
+import "./chunk-L4QG7XZE.js";
+import "./chunk-DQC5FFGV.js";
+import "./chunk-UWYCEYML.js";
+import "./chunk-7UHUOC6F.js";
+import "./chunk-ZYY54HBU.js";
+import "./chunk-EGWVYY7K.js";
+import "./chunk-AMYSEKPF.js";
+import "./chunk-TV74I3Y5.js";
+import "./chunk-KSGA62R2.js";
+import "./chunk-LOZEKOES.js";
+import "./chunk-TOU7EVFQ.js";
+import "./chunk-OAWQ6LOO.js";
+import "./chunk-KYBIQBXE.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-OMR2DT66.js";
+import "./chunk-HFNDKYVF.js";
+export {
+  componentInit,
+  getPlotConfig,
+  survivalInit,
+  t0_t2_defaultQ
+};
+//# sourceMappingURL=survival-BG7QV52L.js.map

package/dist/survival-WSN36OQE.js

@@ -0,0 +1,56 @@
+import {
+  getPillNameDefault
+} from "./chunk-YWUVCXFS.js";
+import "./chunk-HJ6L54YS.js";
+import "./chunk-3QBZ2Y77.js";
+import "./chunk-HYOEWQ5P.js";
+import "./chunk-FN5XPUPH.js";
+import "./chunk-G6O3URDN.js";
+import "./chunk-LSEFWW72.js";
+import "./chunk-KWM6B3NL.js";
+import "./chunk-UCLS2SVB.js";
+import "./chunk-6ZCHECOT.js";
+import "./chunk-MVTCBVSX.js";
+import "./chunk-2K5DSRBJ.js";
+import "./chunk-X4NI4JLQ.js";
+import "./chunk-L4QG7XZE.js";
+import "./chunk-DQC5FFGV.js";
+import "./chunk-UWYCEYML.js";
+import "./chunk-7UHUOC6F.js";
+import "./chunk-ZYY54HBU.js";
+import "./chunk-EGWVYY7K.js";
+import "./chunk-AMYSEKPF.js";
+import "./chunk-TV74I3Y5.js";
+import "./chunk-KSGA62R2.js";
+import "./chunk-LOZEKOES.js";
+import "./chunk-TOU7EVFQ.js";
+import "./chunk-OAWQ6LOO.js";
+import "./chunk-KYBIQBXE.js";
+import "./chunk-I6Y4O3RR.js";
+import "./chunk-OMR2DT66.js";
+import "./chunk-HFNDKYVF.js";
+
+// termsetting/handlers/survival.ts
+function getHandler(self) {
+  return {
+    async showEditMenu(div) {
+      if (!div) return;
+    },
+    getPillStatus() {
+    },
+    getPillName(d) {
+      return getPillNameDefault(self, d);
+    }
+  };
+}
+function fillTW(tw, vocabApi) {
+  if (tw) {
+  }
+  if (vocabApi) {
+  }
+}
+export {
+  fillTW,
+  getHandler
+};
+//# sourceMappingURL=survival-WSN36OQE.js.map