@research-copilot/plugin 1.1.17 → 1.1.19

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (800) hide show
  1. package/README.md +18 -9
  2. package/dist/.claude-plugin/plugin.json +1 -1
  3. package/dist/.codex-plugin/plugin.toml +1 -1
  4. package/dist/.cursor-plugin/plugin.json +1 -1
  5. package/dist/.gemini-plugin/plugin.json +1 -1
  6. package/dist/.opencode-plugin/plugin.json +1 -1
  7. package/dist/.windsurf-plugin/plugin.json +1 -1
  8. package/dist/skills/ablation-planner/SKILL.md +126 -0
  9. package/dist/skills/alphaxiv/SKILL.md +186 -0
  10. package/dist/skills/analyze-results/SKILL.md +45 -0
  11. package/dist/skills/arxiv/SKILL.md +210 -0
  12. package/dist/skills/auto-paper-improvement-loop/SKILL.md +574 -0
  13. package/dist/skills/auto-review-loop/SKILL.md +370 -0
  14. package/dist/skills/auto-review-loop-llm/SKILL.md +247 -0
  15. package/dist/skills/auto-review-loop-minimax/SKILL.md +290 -0
  16. package/dist/skills/benchmark-paper-template/SKILL.md +142 -0
  17. package/dist/skills/benchmark-paper-template/references/benchmark-design.md +180 -0
  18. package/dist/skills/benchmark-paper-template/references/checklist.md +113 -0
  19. package/dist/skills/benchmark-paper-template/references/construction-pipeline.md +127 -0
  20. package/dist/skills/benchmark-paper-template/references/experiments.md +159 -0
  21. package/dist/skills/benchmark-paper-template/references/gap-analysis.md +86 -0
  22. package/dist/skills/benchmark-paper-template/references/instantiation-template.md +194 -0
  23. package/dist/skills/benchmark-paper-template/references/orchestrator-notes.md +96 -0
  24. package/dist/skills/benchmark-paper-template/references/paper-structure.md +209 -0
  25. package/dist/skills/citation-audit/SKILL.md +494 -0
  26. package/dist/skills/claims-drafting/SKILL.md +239 -0
  27. package/dist/skills/comm-lit-review/SKILL.md +299 -0
  28. package/dist/skills/comm-lit-review/references/domain-taxonomy.md +57 -0
  29. package/dist/skills/comm-lit-review/references/output-template.md +37 -0
  30. package/dist/skills/comm-lit-review/references/source-policy.md +99 -0
  31. package/dist/skills/comm-lit-review/references/venue-tiering.md +112 -0
  32. package/dist/skills/composer/SKILL.md +840 -0
  33. package/dist/skills/composer/references/section_guides.md +675 -0
  34. package/dist/skills/composer/references/writing_standards.md +629 -0
  35. package/dist/skills/composer/scripts/chapter_quality_check.py +470 -0
  36. package/dist/skills/composer/scripts/final_evaluation.py +550 -0
  37. package/dist/skills/deepxiv/SKILL.md +142 -0
  38. package/dist/skills/dse-loop/SKILL.md +277 -0
  39. package/dist/skills/embodiment-description/SKILL.md +129 -0
  40. package/dist/skills/exa-search/SKILL.md +192 -0
  41. package/dist/skills/experiment-audit/SKILL.md +262 -0
  42. package/dist/skills/experiment-bridge/SKILL.md +316 -0
  43. package/dist/skills/experiment-plan/SKILL.md +249 -0
  44. package/dist/skills/experiment-queue/SKILL.md +380 -0
  45. package/dist/skills/experiment-queue/scripts/build_manifest.py +142 -0
  46. package/dist/skills/experiment-queue/scripts/queue_manager.py +426 -0
  47. package/dist/skills/feishu-notify/SKILL.md +155 -0
  48. package/dist/skills/figure-description/SKILL.md +138 -0
  49. package/dist/skills/figure-designer/SKILL.md +207 -0
  50. package/dist/skills/figure-designer/references/design-rules.md +99 -0
  51. package/dist/skills/figure-designer/references/experimental-results.md +127 -0
  52. package/dist/skills/figure-designer/references/motivated-example.md +138 -0
  53. package/dist/skills/figure-designer/references/solution-overview.md +145 -0
  54. package/dist/skills/figure-designer/references/tools.md +124 -0
  55. package/dist/skills/figure-spec/SKILL.md +252 -0
  56. package/dist/skills/figure-spec/scripts/figure_renderer.py +799 -0
  57. package/dist/skills/formula-derivation/SKILL.md +280 -0
  58. package/dist/skills/gemini-search/SKILL.md +205 -0
  59. package/dist/skills/grant-proposal/SKILL.md +625 -0
  60. package/dist/skills/humanizer/AGENTS.md +25 -0
  61. package/dist/skills/humanizer/SKILL.md +621 -0
  62. package/dist/skills/idea-creator/SKILL.md +311 -0
  63. package/dist/skills/idea-discovery/SKILL.md +340 -0
  64. package/dist/skills/idea-discovery-robot/SKILL.md +362 -0
  65. package/dist/skills/idea-evaluator/SKILL.md +265 -0
  66. package/dist/skills/idea-evaluator/references/fatal-flaws.md +192 -0
  67. package/dist/skills/idea-evaluator/references/five-dimensions.md +251 -0
  68. package/dist/skills/idea-evaluator/references/lifecycle-capability-matching.md +177 -0
  69. package/dist/skills/idea-evaluator/references/paradigm-elephant.md +112 -0
  70. package/dist/skills/idea-evaluator/references/paradigm-examples.md +107 -0
  71. package/dist/skills/idea-evaluator/references/paradigm-first-principles.md +115 -0
  72. package/dist/skills/idea-evaluator/references/paradigm-hamming.md +137 -0
  73. package/dist/skills/idea-evaluator/references/paradigm-shift-probe.md +160 -0
  74. package/dist/skills/idea-evaluator/references/paradigm-technology-cycle.md +116 -0
  75. package/dist/skills/idea-evaluator/references/worked-examples.md +206 -0
  76. package/dist/skills/interview-cheatsheet/SKILL.md +245 -0
  77. package/dist/skills/intro-drafter/SKILL.md +250 -0
  78. package/dist/skills/intro-drafter/references/contribution-patterns.md +116 -0
  79. package/dist/skills/intro-drafter/references/flowchart.md +204 -0
  80. package/dist/skills/intro-drafter/references/paper-types.md +155 -0
  81. package/dist/skills/intro-drafter/references/running-example.md +133 -0
  82. package/dist/skills/intro-drafter/references/worked-examples.md +161 -0
  83. package/dist/skills/invention-structuring/SKILL.md +188 -0
  84. package/dist/skills/jurisdiction-format/SKILL.md +192 -0
  85. package/dist/skills/kill-argument/SKILL.md +384 -0
  86. package/dist/skills/llm-wiki/.mise.toml +2 -0
  87. package/dist/skills/llm-wiki/.nvmrc +1 -0
  88. package/dist/skills/llm-wiki/AGENTS.md +132 -0
  89. package/dist/skills/llm-wiki/CHANGELOG.md +459 -0
  90. package/dist/skills/llm-wiki/CLAUDE.md +109 -0
  91. package/dist/skills/llm-wiki/HERMES.md +44 -0
  92. package/dist/skills/llm-wiki/SKILL.md +1133 -0
  93. package/dist/skills/llm-wiki/assets/graph-demo.gif +0 -0
  94. package/dist/skills/llm-wiki/assets/graph-preview.png +0 -0
  95. package/dist/skills/llm-wiki/deps/LICENSE-d3.txt +13 -0
  96. package/dist/skills/llm-wiki/deps/LICENSE-marked.txt +44 -0
  97. package/dist/skills/llm-wiki/deps/LICENSE-purify.txt +568 -0
  98. package/{LICENSE → dist/skills/llm-wiki/deps/LICENSE-roughjs.txt} +1 -1
  99. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/SKILL.md +261 -0
  100. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/references/config/first-time-setup.md +106 -0
  101. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/cdp.ts +179 -0
  102. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/constants.ts +13 -0
  103. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/defuddle-converter.ts +58 -0
  104. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/html-to-markdown.ts +135 -0
  105. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/legacy-converter.ts +629 -0
  106. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/main.ts +314 -0
  107. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/markdown-conversion-shared.ts +305 -0
  108. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/media-localizer.ts +317 -0
  109. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/package.json +14 -0
  110. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/paths.ts +29 -0
  111. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/vendor/baoyu-chrome-cdp/package.json +9 -0
  112. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/vendor/baoyu-chrome-cdp/src/index.test.ts +307 -0
  113. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/vendor/baoyu-chrome-cdp/src/index.ts +523 -0
  114. package/dist/skills/llm-wiki/deps/d3.min.js +2 -0
  115. package/dist/skills/llm-wiki/deps/marked.min.js +6 -0
  116. package/dist/skills/llm-wiki/deps/purify.min.js +3 -0
  117. package/dist/skills/llm-wiki/deps/rough.min.js +7 -0
  118. package/dist/skills/llm-wiki/deps/youtube-transcript/SKILL.md +47 -0
  119. package/dist/skills/llm-wiki/deps/youtube-transcript/scripts/get_transcript.py +72 -0
  120. package/dist/skills/llm-wiki/docs/design/oriental-atlas/DESIGN.md +183 -0
  121. package/dist/skills/llm-wiki/docs/design/oriental-atlas/design-brief.md +170 -0
  122. package/dist/skills/llm-wiki/docs/design/oriental-atlas/oriental-editorial-atlas.html +1908 -0
  123. package/dist/skills/llm-wiki/docs/design/oriental-atlas/reviews/result-review.md +68 -0
  124. package/dist/skills/llm-wiki/docs/plans/2026-06-15-omp-tool-status-events-phased-plan.md +655 -0
  125. package/dist/skills/llm-wiki/docs/plans/2026-06-15-omp-tool-status-events-progress.json +913 -0
  126. package/dist/skills/llm-wiki/docs/spark/2026-06-15-omp-tool-status-events-design.md +174 -0
  127. package/dist/skills/llm-wiki/install.ps1 +87 -0
  128. package/dist/skills/llm-wiki/install.sh +722 -0
  129. package/dist/skills/llm-wiki/package-lock.json +10309 -0
  130. package/dist/skills/llm-wiki/package.json +24 -0
  131. package/dist/skills/llm-wiki/packages/graph-engine/package.json +33 -0
  132. package/dist/skills/llm-wiki/packages/graph-engine/src/anim/.gitkeep +1 -0
  133. package/dist/skills/llm-wiki/packages/graph-engine/src/anim/index.ts +179 -0
  134. package/dist/skills/llm-wiki/packages/graph-engine/src/diff.ts +121 -0
  135. package/dist/skills/llm-wiki/packages/graph-engine/src/graph-node.ts +37 -0
  136. package/dist/skills/llm-wiki/packages/graph-engine/src/index.ts +140 -0
  137. package/dist/skills/llm-wiki/packages/graph-engine/src/model/atlas.ts +18 -0
  138. package/dist/skills/llm-wiki/packages/graph-engine/src/model/index.ts +6 -0
  139. package/dist/skills/llm-wiki/packages/graph-engine/src/model/labels.ts +11 -0
  140. package/dist/skills/llm-wiki/packages/graph-engine/src/model/learning.ts +8 -0
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  143. package/dist/skills/llm-wiki/packages/graph-engine/src/model/storage.ts +4 -0
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  148. package/dist/skills/llm-wiki/packages/graph-engine/src/render/model.ts +593 -0
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  178. package/dist/skills/llm-wiki/platforms/claude/CLAUDE.md +37 -0
  179. package/dist/skills/llm-wiki/platforms/claude/companions/llm-wiki-upgrade/SKILL.md +95 -0
  180. package/dist/skills/llm-wiki/platforms/codex/AGENTS.md +23 -0
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  800. package/package.json +1 -1
@@ -0,0 +1,282 @@
1
+ const { describe, it } = require("node:test");
2
+ // DEPRECATED: Covers the legacy wash helpers; remove in the same retirement cycle as templates/graph-styles/wash/.
3
+ const assert = require("node:assert/strict");
4
+ const {
5
+ resolveVisibleSnapshot,
6
+ buildAtlasModel,
7
+ deriveAtlasLayout,
8
+ resolveAtlasVisibleSnapshot,
9
+ resolveAtlasSelectedNodeId,
10
+ getAtlasDensityMode,
11
+ atlasNodePoint,
12
+ getAtlasModelBounds,
13
+ fitAtlasViewport,
14
+ centerAtlasViewportOnPoint,
15
+ zoomAtlasViewport,
16
+ atlasViewportRect,
17
+ atlasPointToMinimap,
18
+ minimapPointToAtlasPoint,
19
+ atlasViewportToMinimapRect
20
+ } = require("../../templates/graph-styles/wash/graph-wash-helpers");
21
+
22
+ describe("resolveVisibleSnapshot", () => {
23
+ const nodes = [
24
+ { id: "n1", label: "机器学习基础", content: "监督学习与数据预处理", degree: 2 },
25
+ { id: "n2", label: "深度学习", content: "神经网络与 Transformer", degree: 3 },
26
+ { id: "n3", label: "Transformer", content: "语言模型核心架构", degree: 2 },
27
+ { id: "n4", label: "数据清洗", content: "数据预处理的一部分", degree: 1 }
28
+ ];
29
+
30
+ const links = [
31
+ { id: "e1", source: "n1", target: "n2", type: "EXTRACTED", weight: 0.95 },
32
+ { id: "e2", source: "n2", target: "n3", type: "EXTRACTED", weight: 0.91 },
33
+ { id: "e3", source: "n1", target: "n4", type: "INFERRED", weight: 0.55 }
34
+ ];
35
+
36
+ it("combines edge filtering, focus mode, and search query", () => {
37
+ const snapshot = resolveVisibleSnapshot({
38
+ nodes,
39
+ links,
40
+ baseNodeIds: ["n1", "n2", "n3", "n4"],
41
+ filters: { EXTRACTED: true, INFERRED: false, AMBIGUOUS: false },
42
+ focusMode: "high_confidence",
43
+ searchQuery: "transformer",
44
+ anchorNodeId: "n2",
45
+ highConfidenceThreshold: 0.9
46
+ });
47
+
48
+ assert.deepEqual(snapshot.node_ids, ["n2", "n3"]);
49
+ assert.deepEqual(snapshot.nodes.map((node) => node.id), ["n2", "n3"]);
50
+ assert.deepEqual(snapshot.links.map((link) => link.id), ["e2"]);
51
+ assert.deepEqual(snapshot.searchIndex.map((entry) => entry.node.id), ["n1", "n2", "n3"]);
52
+ });
53
+
54
+ it("keeps one-hop scope around the selected anchor", () => {
55
+ const snapshot = resolveVisibleSnapshot({
56
+ nodes,
57
+ links,
58
+ baseNodeIds: ["n1", "n2", "n3"],
59
+ filters: { EXTRACTED: true, INFERRED: true, AMBIGUOUS: false },
60
+ focusMode: "one_hop",
61
+ searchQuery: "",
62
+ anchorNodeId: "n2"
63
+ });
64
+
65
+ assert.deepEqual(snapshot.node_ids, ["n1", "n2", "n3"]);
66
+ assert.deepEqual(snapshot.links.map((link) => link.id), ["e1", "e2"]);
67
+ });
68
+
69
+ it("returns empty visible nodes when search has no matches", () => {
70
+ const snapshot = resolveVisibleSnapshot({
71
+ nodes,
72
+ links,
73
+ baseNodeIds: ["n1", "n2", "n3"],
74
+ filters: { EXTRACTED: true, INFERRED: true, AMBIGUOUS: false },
75
+ focusMode: "all",
76
+ searchQuery: "不存在",
77
+ anchorNodeId: "n2"
78
+ });
79
+
80
+ assert.deepEqual(snapshot.node_ids, []);
81
+ assert.deepEqual(snapshot.nodes, []);
82
+ assert.deepEqual(snapshot.links, []);
83
+ assert.equal(snapshot.searchIndex.length, 3);
84
+ });
85
+
86
+ it("keeps an explicitly empty current range empty", () => {
87
+ const snapshot = resolveVisibleSnapshot({
88
+ nodes,
89
+ links,
90
+ baseNodeIds: [],
91
+ filters: { EXTRACTED: true, INFERRED: true, AMBIGUOUS: false },
92
+ focusMode: "all",
93
+ searchQuery: "机器"
94
+ });
95
+
96
+ assert.deepEqual(snapshot.node_ids, []);
97
+ assert.deepEqual(snapshot.nodes, []);
98
+ assert.deepEqual(snapshot.links, []);
99
+ assert.deepEqual(snapshot.searchIndex, []);
100
+ });
101
+ });
102
+
103
+ describe("atlas state contract", () => {
104
+ const rawGraph = {
105
+ meta: { wiki_title: "测试知识库", build_date: "2026-04-27" },
106
+ nodes: [
107
+ { id: "a", label: "知识编译", type: "topic", community: "method", confidence: "EXTRACTED", content: "# 知识编译\n\n整理一次,持续维护。" },
108
+ { id: "b", label: "素材消化", type: "topic", community: "method", confidence: "INFERRED", source_path: "wiki/topics/b.md" },
109
+ { id: "c", label: "网页文章", type: "source", community: "source", confidence: "AMBIGUOUS" }
110
+ ],
111
+ edges: [
112
+ { id: "ab", from: "a", to: "b", type: "EXTRACTED", weight: 0.9 },
113
+ { id: "ac", from: "a", to: "c", type: "INFERRED", weight: 0.6 }
114
+ ],
115
+ learning: {
116
+ entry: { recommended_start_node_id: "a" },
117
+ communities: [
118
+ { id: "method", label: "方法论", node_count: 2, is_primary: true, recommended_start_node_id: "a" },
119
+ { id: "source", label: "素材来源", node_count: 1, recommended_start_node_id: "c" }
120
+ ]
121
+ }
122
+ };
123
+
124
+ it("normalizes raw graph into one atlas model", () => {
125
+ const model = buildAtlasModel(rawGraph);
126
+
127
+ assert.equal(model.meta.wiki_title, "测试知识库");
128
+ assert.equal(model.nodes.length, 3);
129
+ assert.equal(model.edges.length, 2);
130
+ assert.equal(model.byId.a.degree, 2);
131
+ assert.equal(model.byId.a.summary, "整理一次,持续维护。");
132
+ assert.deepEqual(model.communities.map((community) => community.label), ["方法论", "素材来源"]);
133
+ assert.equal(model.starts[0].node.id, "a");
134
+ });
135
+
136
+ it("treats null atlas coordinates as missing layout input", () => {
137
+ const model = buildAtlasModel({
138
+ nodes: [
139
+ { id: "nullish", label: "Nullish", x: null, y: null },
140
+ { id: "origin", label: "Origin", x: 0, y: 0 }
141
+ ],
142
+ edges: []
143
+ });
144
+ deriveAtlasLayout(model);
145
+
146
+ assert.notDeepEqual(
147
+ { x: model.byId.nullish.x, y: model.byId.nullish.y },
148
+ { x: 5, y: 8 }
149
+ );
150
+ assert.deepEqual(
151
+ { x: model.byId.origin.x, y: model.byId.origin.y },
152
+ { x: 5, y: 8 }
153
+ );
154
+ });
155
+
156
+ it("uses one visible snapshot for filters, search, density, and starts", () => {
157
+ const model = buildAtlasModel(rawGraph);
158
+ const layout = deriveAtlasLayout(model);
159
+ const snapshot = resolveAtlasVisibleSnapshot(model, layout, {
160
+ activeCommunityId: "method",
161
+ focusMode: "all",
162
+ query: "素材",
163
+ selectedNodeId: "a",
164
+ filters: { EXTRACTED: true, INFERRED: true }
165
+ });
166
+
167
+ assert.deepEqual(snapshot.node_ids, ["b"]);
168
+ assert.deepEqual(snapshot.nodes.map((node) => node.id), ["b"]);
169
+ assert.deepEqual(snapshot.edges, []);
170
+ assert.equal(snapshot.densityMode, "card");
171
+ assert.equal(snapshot.starts[0].node.id, "b");
172
+ assert.equal(snapshot.importantNodeIds.b, true);
173
+ assert.equal(snapshot.counts.total_nodes, 3);
174
+ });
175
+
176
+ it("keeps recommended starts and high-priority nodes readable as atlas index slips", () => {
177
+ const model = buildAtlasModel(rawGraph);
178
+ const layout = deriveAtlasLayout(model);
179
+ const snapshot = resolveAtlasVisibleSnapshot(model, layout, {
180
+ activeCommunityId: "all",
181
+ focusMode: "all",
182
+ query: "",
183
+ selectedNodeId: null,
184
+ filters: { EXTRACTED: true, INFERRED: true, AMBIGUOUS: true, UNVERIFIED: true }
185
+ });
186
+
187
+ assert.equal(snapshot.starts[0].node.id, "a");
188
+ assert.equal(snapshot.startNodeIds.a, true);
189
+ assert.equal(snapshot.importantNodeIds.a, true);
190
+ assert.equal(snapshot.labelNodeIds.a, true);
191
+ });
192
+
193
+ it("preserves only explicit selections inside the current visible atlas range", () => {
194
+ const model = buildAtlasModel(rawGraph);
195
+ const layout = deriveAtlasLayout(model);
196
+ const methodSnapshot = resolveAtlasVisibleSnapshot(model, layout, {
197
+ activeCommunityId: "source",
198
+ focusMode: "all",
199
+ query: "",
200
+ selectedNodeId: "a",
201
+ filters: { EXTRACTED: true, INFERRED: true, AMBIGUOUS: true, UNVERIFIED: true }
202
+ });
203
+ const emptySnapshot = resolveAtlasVisibleSnapshot(model, layout, {
204
+ activeCommunityId: "source",
205
+ focusMode: "all",
206
+ query: "没有结果",
207
+ selectedNodeId: "c",
208
+ filters: { EXTRACTED: true, INFERRED: true, AMBIGUOUS: true, UNVERIFIED: true }
209
+ });
210
+
211
+ assert.equal(resolveAtlasSelectedNodeId(model, methodSnapshot, "a"), null);
212
+ assert.equal(resolveAtlasSelectedNodeId(model, methodSnapshot, "c"), "c");
213
+ assert.equal(resolveAtlasSelectedNodeId(model, emptySnapshot, "c"), null);
214
+ });
215
+
216
+ it("does not auto-select a recommended start on first open", () => {
217
+ const model = buildAtlasModel(rawGraph);
218
+ const layout = deriveAtlasLayout(model);
219
+ const snapshot = resolveAtlasVisibleSnapshot(model, layout, {
220
+ activeCommunityId: "all",
221
+ focusMode: "all",
222
+ query: "",
223
+ selectedNodeId: null,
224
+ filters: { EXTRACTED: true, INFERRED: true, AMBIGUOUS: true, UNVERIFIED: true }
225
+ });
226
+
227
+ assert.equal(snapshot.starts[0].node.id, "a");
228
+ assert.equal(resolveAtlasSelectedNodeId(model, snapshot, null), null);
229
+ });
230
+
231
+ it("selects density mode by visible node budget", () => {
232
+ assert.equal(getAtlasDensityMode(50), "card");
233
+ assert.equal(getAtlasDensityMode(120), "compact-card");
234
+ assert.equal(getAtlasDensityMode(300), "point-plus-focus");
235
+ assert.equal(getAtlasDensityMode(800), "overview");
236
+ });
237
+
238
+ it("derives one model coordinate space for nodes and bounds", () => {
239
+ const model = buildAtlasModel(rawGraph);
240
+ deriveAtlasLayout(model);
241
+ const point = atlasNodePoint(model.byId.a);
242
+ const bounds = getAtlasModelBounds(model.nodes, 0);
243
+
244
+ assert.equal(point.x, model.byId.a.x * 10);
245
+ assert.equal(point.y, model.byId.a.y * 6.8);
246
+ assert.ok(bounds.width > 0);
247
+ assert.ok(bounds.height > 0);
248
+ assert.ok(bounds.minX <= point.x && point.x <= bounds.maxX);
249
+ assert.ok(bounds.minY <= point.y && point.y <= bounds.maxY);
250
+ });
251
+
252
+ it("fits, zooms, and reports the current viewport rectangle", () => {
253
+ const viewportSize = { width: 1000, height: 680 };
254
+ const bounds = { minX: 250, minY: 180, maxX: 750, maxY: 500, width: 500, height: 320 };
255
+ const fitted = fitAtlasViewport(bounds, viewportSize, { padding: 0.8 });
256
+ const zoomed = zoomAtlasViewport(fitted, 1.5, { x: 500, y: 340 }, viewportSize);
257
+ const rect = atlasViewportRect(zoomed, viewportSize);
258
+
259
+ assert.ok(fitted.scale > 1);
260
+ assert.ok(zoomed.scale > fitted.scale);
261
+ assert.ok(rect.width < 1000);
262
+ assert.ok(rect.height < 680);
263
+ assert.ok(rect.minX >= 0 && rect.maxX <= 1000);
264
+ assert.ok(rect.minY >= 0 && rect.maxY <= 680);
265
+ });
266
+
267
+ it("centers viewport on model points and maps minimap clicks back to atlas coordinates", () => {
268
+ const viewportSize = { width: 800, height: 500 };
269
+ const point = { x: 250, y: 170 };
270
+ const centered = centerAtlasViewportOnPoint(point, viewportSize, 1.4);
271
+ const rect = atlasViewportRect(centered, viewportSize);
272
+ const miniPoint = atlasPointToMinimap(point);
273
+ const restored = minimapPointToAtlasPoint(miniPoint);
274
+ const miniRect = atlasViewportToMinimapRect(centered, viewportSize);
275
+
276
+ assert.ok(rect.minX <= point.x && point.x <= rect.maxX);
277
+ assert.ok(rect.minY <= point.y && point.y <= rect.maxY);
278
+ assert.deepEqual(restored, point);
279
+ assert.ok(miniRect.width > 0);
280
+ assert.ok(miniRect.height > 0);
281
+ });
282
+ });
@@ -0,0 +1,48 @@
1
+ const { describe, it } = require("node:test");
2
+ const assert = require("node:assert/strict");
3
+ const { scanWiki } = require("../../scripts/source-signal-coverage");
4
+ const path = require("path");
5
+
6
+ const FIXTURE_ROOT = path.join(__dirname, "..", "fixtures", "coverage-sample-wiki");
7
+
8
+ describe("scanWiki", () => {
9
+ it("returns correct summary counts", () => {
10
+ const { summary } = scanWiki(FIXTURE_ROOT);
11
+ assert.equal(summary.ok, 2);
12
+ assert.equal(summary.missing_sources, 1);
13
+ assert.equal(summary.empty_sources, 1);
14
+ assert.equal(summary.invalid_sources, 1);
15
+ assert.equal(summary.not_applicable, 2);
16
+ assert.equal(summary.applicable_total, 5);
17
+ });
18
+
19
+ it("returns pages for all scanned files", () => {
20
+ const { pages } = scanWiki(FIXTURE_ROOT);
21
+ assert.equal(pages.length, 7);
22
+ });
23
+
24
+ it("marks synthesis as not_applicable", () => {
25
+ const { pages } = scanWiki(FIXTURE_ROOT);
26
+ const crystal = pages.find((p) => p.id === "Crystal");
27
+ assert.equal(crystal.reason, "not_applicable");
28
+ });
29
+
30
+ it("marks query as not_applicable", () => {
31
+ const { pages } = scanWiki(FIXTURE_ROOT);
32
+ const query = pages.find((p) => p.pageType === "query");
33
+ assert.equal(query.reason, "not_applicable");
34
+ });
35
+
36
+ it("detects ok with correct sourceCount", () => {
37
+ const { pages } = scanWiki(FIXTURE_ROOT);
38
+ const alpha = pages.find((p) => p.id === "Alpha");
39
+ assert.equal(alpha.reason, "ok");
40
+ assert.equal(alpha.sourceCount, 2);
41
+ });
42
+
43
+ it("detects invalid_sources", () => {
44
+ const { pages } = scanWiki(FIXTURE_ROOT);
45
+ const delta = pages.find((p) => p.id === "Delta");
46
+ assert.equal(delta.reason, "invalid_sources");
47
+ });
48
+ });
@@ -0,0 +1,202 @@
1
+ const { describe, it } = require("node:test");
2
+ const assert = require("node:assert/strict");
3
+ const {
4
+ SCAN_KINDS,
5
+ extractFrontmatter,
6
+ evaluateSourceSignalEligibility,
7
+ parseSourcesFrontmatter
8
+ } = require("../../scripts/lib/source-signal-eligibility");
9
+
10
+ describe("extractFrontmatter", () => {
11
+ it("returns hasFrontmatter:false when no frontmatter", () => {
12
+ const result = extractFrontmatter("just body text");
13
+ assert.equal(result.hasFrontmatter, false);
14
+ assert.equal(result.frontmatter, "");
15
+ assert.equal(result.body, "just body text");
16
+ });
17
+
18
+ it("extracts frontmatter from valid document", () => {
19
+ const result = extractFrontmatter("---\ntitle: Test\n---\nbody");
20
+ assert.equal(result.hasFrontmatter, true);
21
+ assert.equal(result.frontmatter, "title: Test");
22
+ assert.equal(result.body, "body");
23
+ });
24
+
25
+ it("returns hasFrontmatter:false for broken frontmatter", () => {
26
+ const result = extractFrontmatter("---\ntitle: Test\nno closing");
27
+ assert.equal(result.hasFrontmatter, false);
28
+ });
29
+ });
30
+
31
+ describe("parseSourcesFrontmatter", () => {
32
+ it("returns hasField:false for empty input", () => {
33
+ const result = parseSourcesFrontmatter("");
34
+ assert.equal(result.hasField, false);
35
+ assert.equal(result.parsed, false);
36
+ assert.deepEqual(result.sources, []);
37
+ });
38
+
39
+ it("returns hasField:false when no sources key", () => {
40
+ const result = parseSourcesFrontmatter("title: Test\nauthor: me");
41
+ assert.equal(result.hasField, false);
42
+ });
43
+
44
+ it("parses single string source", () => {
45
+ const result = parseSourcesFrontmatter('sources: "paper.md"');
46
+ assert.equal(result.hasField, true);
47
+ assert.equal(result.parsed, true);
48
+ assert.deepEqual(result.sources, ["paper.md"]);
49
+ assert.equal(result.signalAvailable, true);
50
+ });
51
+
52
+ it("parses inline array", () => {
53
+ const result = parseSourcesFrontmatter('sources: ["a.md", "b.md"]');
54
+ assert.equal(result.hasField, true);
55
+ assert.deepEqual(result.sources, ["a.md", "b.md"]);
56
+ });
57
+
58
+ it("parses multiline list", () => {
59
+ const result = parseSourcesFrontmatter("sources:\n - paper.md\n - note.md");
60
+ assert.equal(result.hasField, true);
61
+ assert.deepEqual(result.sources, ["note.md", "paper.md"]);
62
+ });
63
+
64
+ it("returns empty_sources for empty array", () => {
65
+ const result = parseSourcesFrontmatter("sources: []");
66
+ assert.equal(result.hasField, true);
67
+ assert.equal(result.parsed, true);
68
+ assert.deepEqual(result.sources, []);
69
+ assert.equal(result.signalAvailable, false);
70
+ });
71
+
72
+ it("returns empty_sources for whitespace-only token", () => {
73
+ const result = parseSourcesFrontmatter('sources:\n - ""');
74
+ assert.equal(result.hasField, true);
75
+ assert.deepEqual(result.sources, []);
76
+ });
77
+
78
+ it("returns parsed:false for broken inline array", () => {
79
+ const result = parseSourcesFrontmatter("sources: [");
80
+ assert.equal(result.hasField, true);
81
+ assert.equal(result.parsed, false);
82
+ assert.deepEqual(result.sources, []);
83
+ });
84
+
85
+ it("returns parsed:false for invalid multiline content", () => {
86
+ const result = parseSourcesFrontmatter("sources:\n foo: bar");
87
+ assert.equal(result.hasField, true);
88
+ assert.equal(result.parsed, false);
89
+ });
90
+
91
+ it("handles numeric sources by stringifying", () => {
92
+ const result = parseSourcesFrontmatter("sources: [1, 2]");
93
+ assert.equal(result.hasField, true);
94
+ assert.equal(result.parsed, true);
95
+ assert.deepEqual(result.sources, ["1", "2"]);
96
+ });
97
+ });
98
+
99
+ describe("evaluateSourceSignalEligibility", () => {
100
+ it("returns not_applicable for synthesis", () => {
101
+ const result = evaluateSourceSignalEligibility({
102
+ pageType: "synthesis",
103
+ frontmatter: "title: Test"
104
+ });
105
+ assert.equal(result.eligible, false);
106
+ assert.equal(result.reason, "not_applicable");
107
+ });
108
+
109
+ it("returns not_applicable for query", () => {
110
+ const result = evaluateSourceSignalEligibility({
111
+ pageType: "query",
112
+ frontmatter: "sources: [a.md]"
113
+ });
114
+ assert.equal(result.eligible, false);
115
+ assert.equal(result.reason, "not_applicable");
116
+ });
117
+
118
+ it("returns not_applicable for unknown page type", () => {
119
+ const result = evaluateSourceSignalEligibility({
120
+ pageType: "unknown",
121
+ frontmatter: "sources: [a.md]"
122
+ });
123
+ assert.equal(result.eligible, false);
124
+ assert.equal(result.reason, "not_applicable");
125
+ });
126
+
127
+ it("returns ok for entity with valid sources", () => {
128
+ const result = evaluateSourceSignalEligibility({
129
+ pageType: "entity",
130
+ frontmatter: "sources:\n - paper.md\n - note.md"
131
+ });
132
+ assert.equal(result.eligible, true);
133
+ assert.equal(result.reason, "ok");
134
+ assert.deepEqual(result.sources, ["note.md", "paper.md"]);
135
+ });
136
+
137
+ it("returns ok for topic with single source", () => {
138
+ const result = evaluateSourceSignalEligibility({
139
+ pageType: "topic",
140
+ frontmatter: 'sources: "paper.md"'
141
+ });
142
+ assert.equal(result.eligible, true);
143
+ assert.equal(result.reason, "ok");
144
+ });
145
+
146
+ it("returns missing_sources when no frontmatter", () => {
147
+ const result = evaluateSourceSignalEligibility({
148
+ pageType: "entity",
149
+ frontmatter: ""
150
+ });
151
+ assert.equal(result.eligible, false);
152
+ assert.equal(result.reason, "missing_sources");
153
+ });
154
+
155
+ it("returns missing_sources when no sources field", () => {
156
+ const result = evaluateSourceSignalEligibility({
157
+ pageType: "entity",
158
+ frontmatter: "title: Test"
159
+ });
160
+ assert.equal(result.eligible, false);
161
+ assert.equal(result.reason, "missing_sources");
162
+ });
163
+
164
+ it("returns empty_sources for empty array", () => {
165
+ const result = evaluateSourceSignalEligibility({
166
+ pageType: "entity",
167
+ frontmatter: "sources: []"
168
+ });
169
+ assert.equal(result.eligible, false);
170
+ assert.equal(result.reason, "empty_sources");
171
+ });
172
+
173
+ it("returns invalid_sources for broken syntax", () => {
174
+ const result = evaluateSourceSignalEligibility({
175
+ pageType: "entity",
176
+ frontmatter: "sources: ["
177
+ });
178
+ assert.equal(result.eligible, false);
179
+ assert.equal(result.reason, "invalid_sources");
180
+ });
181
+
182
+ it("treats comparison as applicable", () => {
183
+ const result = evaluateSourceSignalEligibility({
184
+ pageType: "comparison",
185
+ frontmatter: 'sources: "a.md"'
186
+ });
187
+ assert.equal(result.eligible, true);
188
+ assert.equal(result.reason, "ok");
189
+ });
190
+ });
191
+
192
+ describe("SCAN_KINDS", () => {
193
+ it("includes all 6 page types", () => {
194
+ const types = SCAN_KINDS.map((k) => k.pageType).sort();
195
+ assert.deepEqual(types, ["comparison", "entity", "query", "source", "synthesis", "topic"]);
196
+ });
197
+
198
+ it("marks entity/topic/source/comparison as applicable", () => {
199
+ const applicable = SCAN_KINDS.filter((k) => k.applicable).map((k) => k.pageType).sort();
200
+ assert.deepEqual(applicable, ["comparison", "entity", "source", "topic"]);
201
+ });
202
+ });
@@ -0,0 +1,110 @@
1
+ #!/bin/bash
2
+
3
+ set -euo pipefail
4
+
5
+ GRAPH_HTML_BASIC="tests/fixtures/graph-interactive-basic"
6
+
7
+ fail() {
8
+ echo "FAIL: $1" >&2
9
+ exit 1
10
+ }
11
+
12
+ assert_file_exists() {
13
+ local file="$1"
14
+
15
+ [ -f "$file" ] || fail "Expected file to exist: $file"
16
+ }
17
+
18
+ assert_file_not_exists() {
19
+ local file="$1"
20
+
21
+ [ ! -e "$file" ] || fail "Expected file to not exist: $file"
22
+ }
23
+
24
+ assert_file_contains() {
25
+ local file="$1"
26
+ local text="$2"
27
+
28
+ if ! grep -F -- "$text" "$file" > /dev/null; then
29
+ fail "Expected $file to contain: $text"
30
+ fi
31
+ }
32
+
33
+ assert_file_not_contains() {
34
+ local file="$1"
35
+ local text="$2"
36
+
37
+ if grep -F -- "$text" "$file" > /dev/null; then
38
+ fail "Expected $file to not contain: $text"
39
+ fi
40
+ }
41
+
42
+ ensure_graph_engine_dist() {
43
+ if [ -f "$REPO_ROOT/packages/graph-engine/dist/engine.iife.js" ]; then
44
+ return 0
45
+ fi
46
+
47
+ npm run build -w @llm-wiki/graph-engine > /dev/null 2>&1 \
48
+ || fail "graph-engine build should succeed before offline HTML regression"
49
+ }
50
+
51
+ build_graph_html_fixture() {
52
+ local tmp_dir="$1"
53
+ local output_dir="$tmp_dir/wiki"
54
+
55
+ ensure_graph_engine_dist
56
+ mkdir -p "$output_dir"
57
+ cp "$REPO_ROOT/$GRAPH_HTML_BASIC/wiki/graph-data.json" "$output_dir/graph-data.json"
58
+
59
+ bash "$REPO_ROOT/scripts/build-graph-html.sh" \
60
+ "$tmp_dir" > /dev/null 2>&1 \
61
+ || fail "build-graph-html.sh should succeed on basic fixture"
62
+ }
63
+
64
+ build_graph_html_fixture_with_layout() {
65
+ local tmp_dir="$1"
66
+
67
+ mkdir -p "$tmp_dir/wiki"
68
+ cp "$REPO_ROOT/$GRAPH_HTML_BASIC/wiki/graph-data.json" "$tmp_dir/wiki/graph-data.json"
69
+ cat > "$tmp_dir/.wiki-graph-layout.json" <<'JSON'
70
+ {
71
+ "version": 1,
72
+ "pins": {
73
+ "/fake/wiki/entities/A.md": { "x": 240, "y": 180 }
74
+ },
75
+ "updatedAt": "2026-06-12T00:00:00.000Z"
76
+ }
77
+ JSON
78
+
79
+ ensure_graph_engine_dist
80
+ bash "$REPO_ROOT/scripts/build-graph-html.sh" \
81
+ "$tmp_dir" > /dev/null 2>&1 \
82
+ || fail "build-graph-html.sh should succeed on basic fixture with layout"
83
+ }
84
+
85
+ assert_single_file_engine_output() {
86
+ local output_dir="$1"
87
+ local html="$output_dir/knowledge-graph.html"
88
+
89
+ assert_file_exists "$html"
90
+ assert_file_not_exists "$output_dir/d3.min.js"
91
+ assert_file_not_exists "$output_dir/rough.min.js"
92
+ assert_file_not_exists "$output_dir/marked.min.js"
93
+ assert_file_not_exists "$output_dir/purify.min.js"
94
+ assert_file_not_exists "$output_dir/graph-wash.js"
95
+ assert_file_not_exists "$output_dir/graph-wash-helpers.js"
96
+ assert_file_not_exists "$output_dir/LICENSE-d3.txt"
97
+ assert_file_not_exists "$output_dir/LICENSE-roughjs.txt"
98
+ assert_file_not_exists "$output_dir/LICENSE-marked.txt"
99
+ assert_file_not_exists "$output_dir/LICENSE-purify.txt"
100
+
101
+ assert_file_contains "$html" '<script id="graph-data" type="application/json">'
102
+ assert_file_contains "$html" '<script id="graph-layout" type="application/json">'
103
+ assert_file_contains "$html" "var LlmWikiGraphEngine="
104
+ assert_file_contains "$html" "window.LlmWikiGraphEngine.createGraphEngine"
105
+ assert_file_contains "$html" "persistPins: function"
106
+ assert_file_contains "$html" "window.__LLM_WIKI_GRAPH_PINS_KEY__"
107
+ assert_file_not_contains "$html" 'src="graph-wash.js"'
108
+ assert_file_not_contains "$html" 'src="d3.min.js"'
109
+ assert_file_not_contains "$html" 'sourceMappingURL'
110
+ }
@@ -0,0 +1,32 @@
1
+ #!/bin/bash
2
+ # lint-output.regression-1.sh — 验证 lint 输出结构(排除时间和路径)
3
+ set -eu
4
+
5
+ SKILL_DIR="$(cd "$(dirname "$0")/.." && pwd)"
6
+ FIXTURE="$SKILL_DIR/tests/fixtures/lint-sample-wiki"
7
+ EXPECTED="$SKILL_DIR/tests/expected/lint-output.txt"
8
+
9
+ if [ ! -f "$EXPECTED" ]; then
10
+ echo "FAIL: expected output not found: $EXPECTED"
11
+ exit 1
12
+ fi
13
+
14
+ # 运行 lint,捕获输出
15
+ ACTUAL=$(bash "$SKILL_DIR/scripts/lint-runner.sh" "$FIXTURE" 2>/dev/null)
16
+
17
+ # 稳定化:替换时间为占位符,替换绝对路径为相对路径
18
+ ACTUAL_STABLE=$(echo "$ACTUAL" | \
19
+ sed -E 's/时间:[0-9]{4}-[0-9]{2}-[0-9]{2} [0-9]{2}:[0-9]{2}/时间:YYYY-MM-DD HH:MM/' | \
20
+ sed "s|$FIXTURE|tests/fixtures/lint-sample-wiki|g")
21
+
22
+ EXPECTED_STABLE=$(cat "$EXPECTED")
23
+
24
+ if [ "$ACTUAL_STABLE" = "$EXPECTED_STABLE" ]; then
25
+ echo "PASS: lint output regression"
26
+ exit 0
27
+ else
28
+ echo "FAIL: lint output does not match expected"
29
+ echo "--- diff (actual vs expected) ---"
30
+ diff <(echo "$ACTUAL_STABLE") <(echo "$EXPECTED_STABLE") || true
31
+ exit 1
32
+ fi