@research-copilot/plugin 1.1.17 → 1.1.19

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (800) hide show
  1. package/README.md +18 -9
  2. package/dist/.claude-plugin/plugin.json +1 -1
  3. package/dist/.codex-plugin/plugin.toml +1 -1
  4. package/dist/.cursor-plugin/plugin.json +1 -1
  5. package/dist/.gemini-plugin/plugin.json +1 -1
  6. package/dist/.opencode-plugin/plugin.json +1 -1
  7. package/dist/.windsurf-plugin/plugin.json +1 -1
  8. package/dist/skills/ablation-planner/SKILL.md +126 -0
  9. package/dist/skills/alphaxiv/SKILL.md +186 -0
  10. package/dist/skills/analyze-results/SKILL.md +45 -0
  11. package/dist/skills/arxiv/SKILL.md +210 -0
  12. package/dist/skills/auto-paper-improvement-loop/SKILL.md +574 -0
  13. package/dist/skills/auto-review-loop/SKILL.md +370 -0
  14. package/dist/skills/auto-review-loop-llm/SKILL.md +247 -0
  15. package/dist/skills/auto-review-loop-minimax/SKILL.md +290 -0
  16. package/dist/skills/benchmark-paper-template/SKILL.md +142 -0
  17. package/dist/skills/benchmark-paper-template/references/benchmark-design.md +180 -0
  18. package/dist/skills/benchmark-paper-template/references/checklist.md +113 -0
  19. package/dist/skills/benchmark-paper-template/references/construction-pipeline.md +127 -0
  20. package/dist/skills/benchmark-paper-template/references/experiments.md +159 -0
  21. package/dist/skills/benchmark-paper-template/references/gap-analysis.md +86 -0
  22. package/dist/skills/benchmark-paper-template/references/instantiation-template.md +194 -0
  23. package/dist/skills/benchmark-paper-template/references/orchestrator-notes.md +96 -0
  24. package/dist/skills/benchmark-paper-template/references/paper-structure.md +209 -0
  25. package/dist/skills/citation-audit/SKILL.md +494 -0
  26. package/dist/skills/claims-drafting/SKILL.md +239 -0
  27. package/dist/skills/comm-lit-review/SKILL.md +299 -0
  28. package/dist/skills/comm-lit-review/references/domain-taxonomy.md +57 -0
  29. package/dist/skills/comm-lit-review/references/output-template.md +37 -0
  30. package/dist/skills/comm-lit-review/references/source-policy.md +99 -0
  31. package/dist/skills/comm-lit-review/references/venue-tiering.md +112 -0
  32. package/dist/skills/composer/SKILL.md +840 -0
  33. package/dist/skills/composer/references/section_guides.md +675 -0
  34. package/dist/skills/composer/references/writing_standards.md +629 -0
  35. package/dist/skills/composer/scripts/chapter_quality_check.py +470 -0
  36. package/dist/skills/composer/scripts/final_evaluation.py +550 -0
  37. package/dist/skills/deepxiv/SKILL.md +142 -0
  38. package/dist/skills/dse-loop/SKILL.md +277 -0
  39. package/dist/skills/embodiment-description/SKILL.md +129 -0
  40. package/dist/skills/exa-search/SKILL.md +192 -0
  41. package/dist/skills/experiment-audit/SKILL.md +262 -0
  42. package/dist/skills/experiment-bridge/SKILL.md +316 -0
  43. package/dist/skills/experiment-plan/SKILL.md +249 -0
  44. package/dist/skills/experiment-queue/SKILL.md +380 -0
  45. package/dist/skills/experiment-queue/scripts/build_manifest.py +142 -0
  46. package/dist/skills/experiment-queue/scripts/queue_manager.py +426 -0
  47. package/dist/skills/feishu-notify/SKILL.md +155 -0
  48. package/dist/skills/figure-description/SKILL.md +138 -0
  49. package/dist/skills/figure-designer/SKILL.md +207 -0
  50. package/dist/skills/figure-designer/references/design-rules.md +99 -0
  51. package/dist/skills/figure-designer/references/experimental-results.md +127 -0
  52. package/dist/skills/figure-designer/references/motivated-example.md +138 -0
  53. package/dist/skills/figure-designer/references/solution-overview.md +145 -0
  54. package/dist/skills/figure-designer/references/tools.md +124 -0
  55. package/dist/skills/figure-spec/SKILL.md +252 -0
  56. package/dist/skills/figure-spec/scripts/figure_renderer.py +799 -0
  57. package/dist/skills/formula-derivation/SKILL.md +280 -0
  58. package/dist/skills/gemini-search/SKILL.md +205 -0
  59. package/dist/skills/grant-proposal/SKILL.md +625 -0
  60. package/dist/skills/humanizer/AGENTS.md +25 -0
  61. package/dist/skills/humanizer/SKILL.md +621 -0
  62. package/dist/skills/idea-creator/SKILL.md +311 -0
  63. package/dist/skills/idea-discovery/SKILL.md +340 -0
  64. package/dist/skills/idea-discovery-robot/SKILL.md +362 -0
  65. package/dist/skills/idea-evaluator/SKILL.md +265 -0
  66. package/dist/skills/idea-evaluator/references/fatal-flaws.md +192 -0
  67. package/dist/skills/idea-evaluator/references/five-dimensions.md +251 -0
  68. package/dist/skills/idea-evaluator/references/lifecycle-capability-matching.md +177 -0
  69. package/dist/skills/idea-evaluator/references/paradigm-elephant.md +112 -0
  70. package/dist/skills/idea-evaluator/references/paradigm-examples.md +107 -0
  71. package/dist/skills/idea-evaluator/references/paradigm-first-principles.md +115 -0
  72. package/dist/skills/idea-evaluator/references/paradigm-hamming.md +137 -0
  73. package/dist/skills/idea-evaluator/references/paradigm-shift-probe.md +160 -0
  74. package/dist/skills/idea-evaluator/references/paradigm-technology-cycle.md +116 -0
  75. package/dist/skills/idea-evaluator/references/worked-examples.md +206 -0
  76. package/dist/skills/interview-cheatsheet/SKILL.md +245 -0
  77. package/dist/skills/intro-drafter/SKILL.md +250 -0
  78. package/dist/skills/intro-drafter/references/contribution-patterns.md +116 -0
  79. package/dist/skills/intro-drafter/references/flowchart.md +204 -0
  80. package/dist/skills/intro-drafter/references/paper-types.md +155 -0
  81. package/dist/skills/intro-drafter/references/running-example.md +133 -0
  82. package/dist/skills/intro-drafter/references/worked-examples.md +161 -0
  83. package/dist/skills/invention-structuring/SKILL.md +188 -0
  84. package/dist/skills/jurisdiction-format/SKILL.md +192 -0
  85. package/dist/skills/kill-argument/SKILL.md +384 -0
  86. package/dist/skills/llm-wiki/.mise.toml +2 -0
  87. package/dist/skills/llm-wiki/.nvmrc +1 -0
  88. package/dist/skills/llm-wiki/AGENTS.md +132 -0
  89. package/dist/skills/llm-wiki/CHANGELOG.md +459 -0
  90. package/dist/skills/llm-wiki/CLAUDE.md +109 -0
  91. package/dist/skills/llm-wiki/HERMES.md +44 -0
  92. package/dist/skills/llm-wiki/SKILL.md +1133 -0
  93. package/dist/skills/llm-wiki/assets/graph-demo.gif +0 -0
  94. package/dist/skills/llm-wiki/assets/graph-preview.png +0 -0
  95. package/dist/skills/llm-wiki/deps/LICENSE-d3.txt +13 -0
  96. package/dist/skills/llm-wiki/deps/LICENSE-marked.txt +44 -0
  97. package/dist/skills/llm-wiki/deps/LICENSE-purify.txt +568 -0
  98. package/{LICENSE → dist/skills/llm-wiki/deps/LICENSE-roughjs.txt} +1 -1
  99. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/SKILL.md +261 -0
  100. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/references/config/first-time-setup.md +106 -0
  101. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/cdp.ts +179 -0
  102. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/constants.ts +13 -0
  103. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/defuddle-converter.ts +58 -0
  104. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/html-to-markdown.ts +135 -0
  105. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/legacy-converter.ts +629 -0
  106. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/main.ts +314 -0
  107. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/markdown-conversion-shared.ts +305 -0
  108. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/media-localizer.ts +317 -0
  109. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/package.json +14 -0
  110. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/paths.ts +29 -0
  111. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/vendor/baoyu-chrome-cdp/package.json +9 -0
  112. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/vendor/baoyu-chrome-cdp/src/index.test.ts +307 -0
  113. package/dist/skills/llm-wiki/deps/baoyu-url-to-markdown/scripts/vendor/baoyu-chrome-cdp/src/index.ts +523 -0
  114. package/dist/skills/llm-wiki/deps/d3.min.js +2 -0
  115. package/dist/skills/llm-wiki/deps/marked.min.js +6 -0
  116. package/dist/skills/llm-wiki/deps/purify.min.js +3 -0
  117. package/dist/skills/llm-wiki/deps/rough.min.js +7 -0
  118. package/dist/skills/llm-wiki/deps/youtube-transcript/SKILL.md +47 -0
  119. package/dist/skills/llm-wiki/deps/youtube-transcript/scripts/get_transcript.py +72 -0
  120. package/dist/skills/llm-wiki/docs/design/oriental-atlas/DESIGN.md +183 -0
  121. package/dist/skills/llm-wiki/docs/design/oriental-atlas/design-brief.md +170 -0
  122. package/dist/skills/llm-wiki/docs/design/oriental-atlas/oriental-editorial-atlas.html +1908 -0
  123. package/dist/skills/llm-wiki/docs/design/oriental-atlas/reviews/result-review.md +68 -0
  124. package/dist/skills/llm-wiki/docs/plans/2026-06-15-omp-tool-status-events-phased-plan.md +655 -0
  125. package/dist/skills/llm-wiki/docs/plans/2026-06-15-omp-tool-status-events-progress.json +913 -0
  126. package/dist/skills/llm-wiki/docs/spark/2026-06-15-omp-tool-status-events-design.md +174 -0
  127. package/dist/skills/llm-wiki/install.ps1 +87 -0
  128. package/dist/skills/llm-wiki/install.sh +722 -0
  129. package/dist/skills/llm-wiki/package-lock.json +10309 -0
  130. package/dist/skills/llm-wiki/package.json +24 -0
  131. package/dist/skills/llm-wiki/packages/graph-engine/package.json +33 -0
  132. package/dist/skills/llm-wiki/packages/graph-engine/src/anim/.gitkeep +1 -0
  133. package/dist/skills/llm-wiki/packages/graph-engine/src/anim/index.ts +179 -0
  134. package/dist/skills/llm-wiki/packages/graph-engine/src/diff.ts +121 -0
  135. package/dist/skills/llm-wiki/packages/graph-engine/src/graph-node.ts +37 -0
  136. package/dist/skills/llm-wiki/packages/graph-engine/src/index.ts +140 -0
  137. package/dist/skills/llm-wiki/packages/graph-engine/src/model/atlas.ts +18 -0
  138. package/dist/skills/llm-wiki/packages/graph-engine/src/model/index.ts +6 -0
  139. package/dist/skills/llm-wiki/packages/graph-engine/src/model/labels.ts +11 -0
  140. package/dist/skills/llm-wiki/packages/graph-engine/src/model/learning.ts +8 -0
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  143. package/dist/skills/llm-wiki/packages/graph-engine/src/model/storage.ts +4 -0
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  148. package/dist/skills/llm-wiki/packages/graph-engine/src/render/model.ts +593 -0
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  178. package/dist/skills/llm-wiki/platforms/claude/CLAUDE.md +37 -0
  179. package/dist/skills/llm-wiki/platforms/claude/companions/llm-wiki-upgrade/SKILL.md +95 -0
  180. package/dist/skills/llm-wiki/platforms/codex/AGENTS.md +23 -0
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+ favorites: normalizedFavorites,
216
+ notes: normalizedNotes,
217
+ recentNoteIds: normalizedRecentNoteIds
218
+ };
219
+ }
220
+
221
+ function toggleQueueFavorite(queue, nodeId) {
222
+ var safe = normalizeQueue(queue);
223
+ var favoriteNodeId = nodeId == null ? "" : String(nodeId);
224
+ if (!favoriteNodeId) return safe;
225
+ var favorites = safe.favorites.slice();
226
+ var existingIndex = favorites.indexOf(favoriteNodeId);
227
+ if (existingIndex === -1) {
228
+ favorites.unshift(favoriteNodeId);
229
+ } else {
230
+ favorites.splice(existingIndex, 1);
231
+ }
232
+ return {
233
+ version: safe.version,
234
+ favorites: favorites,
235
+ notes: safe.notes.slice(),
236
+ recentNoteIds: safe.recentNoteIds.slice()
237
+ };
238
+ }
239
+
240
+ function appendQueueNote(queue, note, limit) {
241
+ var safe = normalizeQueue(queue);
242
+ if (!note || typeof note !== "object" || note.id == null || note.node_id == null) return safe;
243
+ var noteLimit = Number.isFinite(Number(limit)) ? Math.max(1, Math.round(Number(limit))) : 50;
244
+ var normalizedNote = {
245
+ id: String(note.id),
246
+ node_id: String(note.node_id),
247
+ label: note.label == null ? String(note.node_id) : String(note.label),
248
+ text: note.text == null ? "" : String(note.text),
249
+ created_at: note.created_at == null ? null : String(note.created_at)
250
+ };
251
+ var notes = [normalizedNote].concat(safe.notes.filter(function (item) {
252
+ return item.id !== normalizedNote.id;
253
+ })).slice(0, noteLimit);
254
+ var recentNoteIds = [normalizedNote.id].concat(safe.recentNoteIds.filter(function (noteId) {
255
+ return noteId !== normalizedNote.id;
256
+ })).slice(0, Math.min(noteLimit, 12));
257
+ return {
258
+ version: safe.version,
259
+ favorites: safe.favorites.slice(),
260
+ notes: notes,
261
+ recentNoteIds: recentNoteIds
262
+ };
263
+ }
264
+
265
+ function summarizeQueue(queue, nodesById, limit) {
266
+ var safe = normalizeQueue(queue);
267
+ var maxItems = Number.isFinite(Number(limit)) ? Math.max(1, Math.round(Number(limit))) : 4;
268
+ var byId = nodesById && typeof nodesById === "object" ? nodesById : {};
269
+ var notesById = {};
270
+ var recentItems = [];
271
+ var i;
272
+
273
+ for (i = 0; i < safe.notes.length; i++) {
274
+ notesById[safe.notes[i].id] = safe.notes[i];
275
+ }
276
+
277
+ for (i = 0; i < safe.recentNoteIds.length && recentItems.length < maxItems; i++) {
278
+ var note = notesById[safe.recentNoteIds[i]];
279
+ if (!note) continue;
280
+ var noteNode = byId[note.node_id];
281
+ recentItems.push({
282
+ kind: "note",
283
+ node_id: note.node_id,
284
+ label: note.label || (noteNode && (noteNode.label || noteNode.id)) || note.node_id,
285
+ text: note.text || ""
286
+ });
287
+ }
288
+
289
+ for (i = 0; i < safe.favorites.length && recentItems.length < maxItems; i++) {
290
+ var favoriteNodeId = safe.favorites[i];
291
+ var favoriteNode = byId[favoriteNodeId];
292
+ recentItems.push({
293
+ kind: "favorite",
294
+ node_id: favoriteNodeId,
295
+ label: favoriteNode && (favoriteNode.label || favoriteNode.id) ? (favoriteNode.label || favoriteNode.id) : favoriteNodeId,
296
+ text: ""
297
+ });
298
+ }
299
+
300
+ return {
301
+ favorite_count: safe.favorites.length,
302
+ note_count: safe.notes.length,
303
+ recent_items: recentItems
304
+ };
305
+ }
306
+
307
+ function defaultLearning() {
308
+ return {
309
+ version: 1,
310
+ entry: { recommended_start_node_id: null, recommended_start_reason: null, default_mode: "global" },
311
+ views: {
312
+ path: { enabled: false, start_node_id: null, node_ids: [], degraded: true },
313
+ community: { enabled: false, community_id: null, label: null, node_ids: [], is_weak: false, degraded: true },
314
+ global: { enabled: true, node_ids: [], degraded: false }
315
+ },
316
+ communities: [],
317
+ degraded: { path_to_community: true, community_to_global: true }
318
+ };
319
+ }
320
+
321
+ function normalizeLearning(raw) {
322
+ if (!raw || typeof raw !== "object") return defaultLearning();
323
+ var d = defaultLearning();
324
+ function pick(obj, key, fallback) {
325
+ return obj && obj[key] != null ? obj[key] : fallback;
326
+ }
327
+ return {
328
+ version: pick(raw, "version", d.version),
329
+ entry: {
330
+ recommended_start_node_id: pick(raw.entry, "recommended_start_node_id", d.entry.recommended_start_node_id),
331
+ recommended_start_reason: pick(raw.entry, "recommended_start_reason", d.entry.recommended_start_reason),
332
+ default_mode: pick(raw.entry, "default_mode", d.entry.default_mode)
333
+ },
334
+ views: {
335
+ path: {
336
+ enabled: pick(raw.views && raw.views.path, "enabled", d.views.path.enabled),
337
+ start_node_id: pick(raw.views && raw.views.path, "start_node_id", d.views.path.start_node_id),
338
+ node_ids: Array.isArray(raw.views && raw.views.path && raw.views.path.node_ids) ? raw.views.path.node_ids : d.views.path.node_ids,
339
+ degraded: pick(raw.views && raw.views.path, "degraded", d.views.path.degraded)
340
+ },
341
+ community: {
342
+ enabled: pick(raw.views && raw.views.community, "enabled", d.views.community.enabled),
343
+ community_id: pick(raw.views && raw.views.community, "community_id", d.views.community.community_id),
344
+ label: pick(raw.views && raw.views.community, "label", d.views.community.label),
345
+ node_ids: Array.isArray(raw.views && raw.views.community && raw.views.community.node_ids) ? raw.views.community.node_ids : d.views.community.node_ids,
346
+ is_weak: pick(raw.views && raw.views.community, "is_weak", d.views.community.is_weak),
347
+ degraded: pick(raw.views && raw.views.community, "degraded", d.views.community.degraded)
348
+ },
349
+ global: {
350
+ enabled: pick(raw.views && raw.views.global, "enabled", d.views.global.enabled),
351
+ node_ids: Array.isArray(raw.views && raw.views.global && raw.views.global.node_ids) ? raw.views.global.node_ids : d.views.global.node_ids,
352
+ degraded: pick(raw.views && raw.views.global, "degraded", d.views.global.degraded)
353
+ }
354
+ },
355
+ communities: Array.isArray(raw.communities) ? raw.communities : d.communities,
356
+ degraded: {
357
+ path_to_community: pick(raw.degraded, "path_to_community", d.degraded.path_to_community),
358
+ community_to_global: pick(raw.degraded, "community_to_global", d.degraded.community_to_global)
359
+ }
360
+ };
361
+ }
362
+
363
+ function resolveInitialMode(learning) {
364
+ return "global";
365
+ }
366
+
367
+ function getCommunityNodeIds(nodes, communityId) {
368
+ if (!Array.isArray(nodes) || !communityId) return [];
369
+ return nodes
370
+ .filter(function (node) {
371
+ return node && node.community != null && String(node.community) === String(communityId);
372
+ })
373
+ .map(function (node) {
374
+ return node.id;
375
+ })
376
+ .sort();
377
+ }
378
+
379
+ function getVisibleNodeIds(learning, mode) {
380
+ if (!learning || !learning.views) return [];
381
+ var view = learning.views[mode];
382
+ if (!view || !view.enabled) return [];
383
+ return Array.isArray(view.node_ids) ? view.node_ids : [];
384
+ }
385
+
386
+ function getVisibleLinks(allLinks, visibleIds) {
387
+ if (!visibleIds || !visibleIds.length) return allLinks;
388
+ var idSet = {};
389
+ for (var i = 0; i < visibleIds.length; i++) idSet[visibleIds[i]] = true;
390
+ return allLinks.filter(function (l) {
391
+ var s = l.source.id || l.source;
392
+ var t = l.target.id || l.target;
393
+ return idSet[s] && idSet[t];
394
+ });
395
+ }
396
+
397
+ function buildSearchHaystack(node) {
398
+ return ((node && (node.label || node.id || "")) + "\n" + (((node && node.content) || "").slice(0, 500))).toLowerCase();
399
+ }
400
+
401
+ function buildSearchIndex(nodes) {
402
+ if (!Array.isArray(nodes)) return [];
403
+ return nodes.map(function (node) {
404
+ return { node: node, haystack: buildSearchHaystack(node) };
405
+ });
406
+ }
407
+
408
+ function filterLinksByTypes(allLinks, filters) {
409
+ if (!Array.isArray(allLinks)) return [];
410
+ if (!filters || typeof filters !== "object") return allLinks.slice();
411
+ return allLinks.filter(function (link) {
412
+ var type = link && link.type ? link.type : "EXTRACTED";
413
+ return filters[type] !== false;
414
+ });
415
+ }
416
+
417
+ function applySearchToNodeIds(searchIndex, query) {
418
+ if (!Array.isArray(searchIndex)) return [];
419
+ var normalizedQuery = typeof query === "string" ? query.trim().toLowerCase() : "";
420
+ var matches = !normalizedQuery
421
+ ? searchIndex
422
+ : searchIndex.filter(function (entry) {
423
+ return entry && typeof entry.haystack === "string" && entry.haystack.indexOf(normalizedQuery) !== -1;
424
+ });
425
+ return matches
426
+ .map(function (entry) {
427
+ return entry && entry.node ? entry.node.id : null;
428
+ })
429
+ .filter(function (id) {
430
+ return id != null;
431
+ });
432
+ }
433
+
434
+ function getLinkEndpointIds(link) {
435
+ return {
436
+ sourceId: link && link.source && link.source.id ? link.source.id : link && link.source,
437
+ targetId: link && link.target && link.target.id ? link.target.id : link && link.target
438
+ };
439
+ }
440
+
441
+ function sortNodeIdsByScore(nodeIds, scores, nodesById) {
442
+ return nodeIds.slice().sort(function (left, right) {
443
+ var scoreDiff = (scores[right] || 0) - (scores[left] || 0);
444
+ if (scoreDiff) return scoreDiff;
445
+ var leftDegree = nodesById[left] && Number.isFinite(Number(nodesById[left].degree)) ? Number(nodesById[left].degree) : 0;
446
+ var rightDegree = nodesById[right] && Number.isFinite(Number(nodesById[right].degree)) ? Number(nodesById[right].degree) : 0;
447
+ if (rightDegree !== leftDegree) return rightDegree - leftDegree;
448
+ return String(left).localeCompare(String(right));
449
+ });
450
+ }
451
+
452
+ function applyFocusMode(options) {
453
+ var safe = options && typeof options === "object" ? options : {};
454
+ var nodes = Array.isArray(safe.nodes) ? safe.nodes : [];
455
+ var links = Array.isArray(safe.links) ? safe.links : [];
456
+ var nodeIds = Array.isArray(safe.nodeIds) ? safe.nodeIds.slice() : [];
457
+ var mode = safe.mode || "all";
458
+ var anchorNodeId = safe.anchorNodeId != null ? String(safe.anchorNodeId) : null;
459
+ var highConfidenceThreshold = Number.isFinite(Number(safe.highConfidenceThreshold)) ? Number(safe.highConfidenceThreshold) : 0.75;
460
+ var nodesById = {};
461
+ var idSet = {};
462
+ var i;
463
+
464
+ for (i = 0; i < nodes.length; i++) {
465
+ if (nodes[i] && nodes[i].id != null) nodesById[nodes[i].id] = nodes[i];
466
+ }
467
+ for (i = 0; i < nodeIds.length; i++) idSet[nodeIds[i]] = true;
468
+
469
+ if (!nodeIds.length) return { node_ids: [], links: [] };
470
+
471
+ var scopedLinks = getVisibleLinks(links, nodeIds);
472
+ if (mode === "all") return { node_ids: nodeIds.slice(), links: scopedLinks };
473
+
474
+ if (mode === "high_confidence") {
475
+ var strongLinks = scopedLinks.filter(function (link) {
476
+ var weight = Number(link && link.weight);
477
+ return Number.isFinite(weight) && weight >= highConfidenceThreshold;
478
+ });
479
+ var strongIdSet = {};
480
+ for (i = 0; i < strongLinks.length; i++) {
481
+ var strongEdge = getLinkEndpointIds(strongLinks[i]);
482
+ if (idSet[strongEdge.sourceId]) strongIdSet[strongEdge.sourceId] = true;
483
+ if (idSet[strongEdge.targetId]) strongIdSet[strongEdge.targetId] = true;
484
+ }
485
+ if (anchorNodeId && idSet[anchorNodeId]) strongIdSet[anchorNodeId] = true;
486
+ var strongNodeIds = nodeIds.filter(function (id) {
487
+ return !!strongIdSet[id];
488
+ });
489
+ return { node_ids: strongNodeIds, links: getVisibleLinks(strongLinks, strongNodeIds) };
490
+ }
491
+
492
+ if (mode === "one_hop") {
493
+ var hopAnchorNodeId = anchorNodeId && idSet[anchorNodeId] ? anchorNodeId : nodeIds[0] || null;
494
+ if (!hopAnchorNodeId) return { node_ids: [], links: [] };
495
+ var hopIdSet = {};
496
+ hopIdSet[hopAnchorNodeId] = true;
497
+ for (i = 0; i < scopedLinks.length; i++) {
498
+ var hopEdge = getLinkEndpointIds(scopedLinks[i]);
499
+ if (hopEdge.sourceId === hopAnchorNodeId && idSet[hopEdge.targetId]) hopIdSet[hopEdge.targetId] = true;
500
+ if (hopEdge.targetId === hopAnchorNodeId && idSet[hopEdge.sourceId]) hopIdSet[hopEdge.sourceId] = true;
501
+ }
502
+ var hopNodeIds = nodeIds.filter(function (id) {
503
+ return !!hopIdSet[id];
504
+ });
505
+ return { node_ids: hopNodeIds, links: getVisibleLinks(scopedLinks, hopNodeIds) };
506
+ }
507
+
508
+ if (mode === "core") {
509
+ if (nodeIds.length <= 3) return { node_ids: nodeIds.slice(), links: scopedLinks };
510
+ var scores = {};
511
+ for (i = 0; i < nodeIds.length; i++) scores[nodeIds[i]] = 0;
512
+ for (i = 0; i < scopedLinks.length; i++) {
513
+ var coreEdge = getLinkEndpointIds(scopedLinks[i]);
514
+ var weight = Number(scopedLinks[i] && scopedLinks[i].weight);
515
+ var score = Number.isFinite(weight) ? 1 + weight : 1.5;
516
+ if (scores[coreEdge.sourceId] != null) scores[coreEdge.sourceId] += score;
517
+ if (scores[coreEdge.targetId] != null) scores[coreEdge.targetId] += score;
518
+ }
519
+ var coreLimit = Number.isFinite(Number(safe.coreLimit)) ? Number(safe.coreLimit) : Math.max(3, Math.min(8, Math.round(nodeIds.length * 0.5)));
520
+ coreLimit = Math.max(1, Math.min(nodeIds.length, Math.round(coreLimit)));
521
+ var coreNodeIds = sortNodeIdsByScore(nodeIds, scores, nodesById).slice(0, coreLimit);
522
+ return { node_ids: coreNodeIds, links: getVisibleLinks(scopedLinks, coreNodeIds) };
523
+ }
524
+
525
+ return { node_ids: nodeIds.slice(), links: scopedLinks };
526
+ }
527
+
528
+ function resolveVisibleSnapshot(options) {
529
+ var safe = options && typeof options === "object" ? options : {};
530
+ var nodes = Array.isArray(safe.nodes) ? safe.nodes : [];
531
+ var links = Array.isArray(safe.links) ? safe.links : [];
532
+ var baseNodeIds = Array.isArray(safe.baseNodeIds)
533
+ ? safe.baseNodeIds.slice()
534
+ : nodes.map(function (node) { return node.id; });
535
+ var filteredLinks = filterLinksByTypes(links, safe.filters);
536
+ var scopedLinks = getVisibleLinks(filteredLinks, baseNodeIds);
537
+ var focusResult = applyFocusMode({
538
+ mode: safe.focusMode,
539
+ nodes: nodes,
540
+ links: scopedLinks,
541
+ nodeIds: baseNodeIds,
542
+ anchorNodeId: safe.anchorNodeId,
543
+ highConfidenceThreshold: safe.highConfidenceThreshold,
544
+ coreLimit: safe.coreLimit
545
+ });
546
+ var focusNodeIds = focusResult.node_ids || [];
547
+ if (!focusNodeIds.length && safe.focusMode && safe.focusMode !== "all") {
548
+ return { node_ids: [], nodes: [], links: [], searchIndex: [] };
549
+ }
550
+ if (!focusNodeIds.length) focusNodeIds = baseNodeIds;
551
+ var focusNodes = nodes.filter(function (node) {
552
+ return focusNodeIds.indexOf(node.id) !== -1;
553
+ });
554
+ var searchIndex = buildSearchIndex(focusNodes);
555
+ var query = typeof safe.searchQuery === "string" ? safe.searchQuery.trim() : "";
556
+ var finalNodeIds = query ? applySearchToNodeIds(searchIndex, query) : focusNodeIds;
557
+ var idSet = {};
558
+ for (var i = 0; i < finalNodeIds.length; i++) idSet[finalNodeIds[i]] = true;
559
+ return {
560
+ node_ids: finalNodeIds,
561
+ nodes: nodes.filter(function (node) {
562
+ return !!idSet[node.id];
563
+ }),
564
+ links: finalNodeIds.length
565
+ ? getVisibleLinks(focusResult.links && focusResult.links.length ? focusResult.links : scopedLinks, finalNodeIds)
566
+ : [],
567
+ searchIndex: searchIndex
568
+ };
569
+ }
570
+
571
+ function shouldAutoOpenDrawer(mode) {
572
+ return mode === "path";
573
+ }
574
+
575
+ var ATLAS_CONFIDENCE_LABELS = {
576
+ EXTRACTED: "直接提取",
577
+ INFERRED: "推断关联",
578
+ AMBIGUOUS: "存在歧义",
579
+ UNVERIFIED: "未核实"
580
+ };
581
+
582
+ var ATLAS_TYPE_LABELS = {
583
+ topic: "主题",
584
+ entity: "实体",
585
+ source: "来源"
586
+ };
587
+
588
+ var ATLAS_TYPE_KINDS = {
589
+ topic: "TOPIC",
590
+ entity: "ENTITY",
591
+ source: "SOURCE"
592
+ };
593
+
594
+ function normalizeAtlasType(type) {
595
+ var normalized = String(type || "entity").toLowerCase();
596
+ return ATLAS_TYPE_LABELS[normalized] ? normalized : "entity";
597
+ }
598
+
599
+ function normalizeAtlasConfidence(confidence) {
600
+ var normalized = String(confidence || "EXTRACTED").toUpperCase();
601
+ return ATLAS_CONFIDENCE_LABELS[normalized] ? normalized : "EXTRACTED";
602
+ }
603
+
604
+ function atlasConfidenceLabel(confidence) {
605
+ var normalized = normalizeAtlasConfidence(confidence);
606
+ return ATLAS_CONFIDENCE_LABELS[normalized];
607
+ }
608
+
609
+ function atlasTypeLabel(type) {
610
+ var normalized = normalizeAtlasType(type);
611
+ return ATLAS_TYPE_LABELS[normalized];
612
+ }
613
+
614
+ function atlasNodeKind(type) {
615
+ var normalized = normalizeAtlasType(type);
616
+ return ATLAS_TYPE_KINDS[normalized];
617
+ }
618
+
619
+ function clampAtlasNumber(value, fallback, min, max) {
620
+ var numeric = Number(value);
621
+ if (!Number.isFinite(numeric)) numeric = fallback;
622
+ if (Number.isFinite(Number(min))) numeric = Math.max(Number(min), numeric);
623
+ if (Number.isFinite(Number(max))) numeric = Math.min(Number(max), numeric);
624
+ return numeric;
625
+ }
626
+
627
+ function normalizeAtlasViewportSize(size) {
628
+ var safe = size && typeof size === "object" ? size : {};
629
+ return {
630
+ width: clampAtlasNumber(safe.width, ATLAS_WORLD_WIDTH, 1, 100000),
631
+ height: clampAtlasNumber(safe.height, ATLAS_WORLD_HEIGHT, 1, 100000)
632
+ };
633
+ }
634
+
635
+ function normalizeAtlasViewport(viewport) {
636
+ var safe = viewport && typeof viewport === "object" ? viewport : {};
637
+ return {
638
+ x: clampAtlasNumber(safe.x, 0, -1000000, 1000000),
639
+ y: clampAtlasNumber(safe.y, 0, -1000000, 1000000),
640
+ scale: clampAtlasNumber(safe.scale, 1, ATLAS_MIN_SCALE, ATLAS_MAX_SCALE)
641
+ };
642
+ }
643
+
644
+ function atlasNodePoint(node) {
645
+ var safe = node && typeof node === "object" ? node : {};
646
+ return {
647
+ x: clampAtlasNumber(safe.x, 50, 0, 100) / 100 * ATLAS_WORLD_WIDTH,
648
+ y: clampAtlasNumber(safe.y, 50, 0, 100) / 100 * ATLAS_WORLD_HEIGHT
649
+ };
650
+ }
651
+
652
+ function getAtlasModelBounds(nodes, padding) {
653
+ var list = Array.isArray(nodes) ? nodes : [];
654
+ var pad = Number.isFinite(Number(padding)) ? Math.max(0, Number(padding)) : 48;
655
+ if (!list.length) {
656
+ return {
657
+ x: 0,
658
+ y: 0,
659
+ width: ATLAS_WORLD_WIDTH,
660
+ height: ATLAS_WORLD_HEIGHT,
661
+ minX: 0,
662
+ minY: 0,
663
+ maxX: ATLAS_WORLD_WIDTH,
664
+ maxY: ATLAS_WORLD_HEIGHT
665
+ };
666
+ }
667
+
668
+ var minX = ATLAS_WORLD_WIDTH;
669
+ var minY = ATLAS_WORLD_HEIGHT;
670
+ var maxX = 0;
671
+ var maxY = 0;
672
+ list.forEach(function (node) {
673
+ var point = atlasNodePoint(node);
674
+ minX = Math.min(minX, point.x);
675
+ minY = Math.min(minY, point.y);
676
+ maxX = Math.max(maxX, point.x);
677
+ maxY = Math.max(maxY, point.y);
678
+ });
679
+
680
+ minX = clampAtlasNumber(minX - pad, 0, 0, ATLAS_WORLD_WIDTH);
681
+ minY = clampAtlasNumber(minY - pad, 0, 0, ATLAS_WORLD_HEIGHT);
682
+ maxX = clampAtlasNumber(maxX + pad, ATLAS_WORLD_WIDTH, 0, ATLAS_WORLD_WIDTH);
683
+ maxY = clampAtlasNumber(maxY + pad, ATLAS_WORLD_HEIGHT, 0, ATLAS_WORLD_HEIGHT);
684
+
685
+ return {
686
+ x: minX,
687
+ y: minY,
688
+ width: Math.max(1, maxX - minX),
689
+ height: Math.max(1, maxY - minY),
690
+ minX: minX,
691
+ minY: minY,
692
+ maxX: maxX,
693
+ maxY: maxY
694
+ };
695
+ }
696
+
697
+ function clampAtlasViewport(viewport, viewportSize, options) {
698
+ var size = normalizeAtlasViewportSize(viewportSize);
699
+ var safe = normalizeAtlasViewport(viewport);
700
+ var opts = options && typeof options === "object" ? options : {};
701
+ var minScale = clampAtlasNumber(opts.minScale, ATLAS_MIN_SCALE, 0.1, ATLAS_MAX_SCALE);
702
+ var maxScale = clampAtlasNumber(opts.maxScale, ATLAS_MAX_SCALE, minScale, 10);
703
+ var marginX = clampAtlasNumber(opts.marginX, size.width * 0.38, 0, size.width);
704
+ var marginY = clampAtlasNumber(opts.marginY, size.height * 0.38, 0, size.height);
705
+ var scale = clampAtlasNumber(safe.scale, 1, minScale, maxScale);
706
+ var scaledWidth = size.width * scale;
707
+ var scaledHeight = size.height * scale;
708
+ var minX = size.width - scaledWidth - marginX;
709
+ var maxX = marginX;
710
+ var minY = size.height - scaledHeight - marginY;
711
+ var maxY = marginY;
712
+
713
+ if (scaledWidth <= size.width) {
714
+ var centerX = (size.width - scaledWidth) / 2;
715
+ minX = centerX - marginX;
716
+ maxX = centerX + marginX;
717
+ }
718
+ if (scaledHeight <= size.height) {
719
+ var centerY = (size.height - scaledHeight) / 2;
720
+ minY = centerY - marginY;
721
+ maxY = centerY + marginY;
722
+ }
723
+
724
+ return {
725
+ x: clampAtlasNumber(safe.x, 0, minX, maxX),
726
+ y: clampAtlasNumber(safe.y, 0, minY, maxY),
727
+ scale: scale
728
+ };
729
+ }
730
+
731
+ function fitAtlasViewport(bounds, viewportSize, options) {
732
+ var safeBounds = bounds && typeof bounds === "object" ? bounds : getAtlasModelBounds([]);
733
+ var size = normalizeAtlasViewportSize(viewportSize);
734
+ var opts = options && typeof options === "object" ? options : {};
735
+ var padding = clampAtlasNumber(opts.padding, 0.84, 0.2, 1);
736
+ var minScale = clampAtlasNumber(opts.minScale, ATLAS_MIN_SCALE, 0.1, ATLAS_MAX_SCALE);
737
+ var maxScale = clampAtlasNumber(opts.maxScale, 2.15, minScale, ATLAS_MAX_SCALE);
738
+ var widthScale = ATLAS_WORLD_WIDTH * padding / Math.max(1, safeBounds.width || 1);
739
+ var heightScale = ATLAS_WORLD_HEIGHT * padding / Math.max(1, safeBounds.height || 1);
740
+ var scale = clampAtlasNumber(Math.min(widthScale, heightScale), 1, minScale, maxScale);
741
+ var centerX = (safeBounds.minX != null && safeBounds.maxX != null)
742
+ ? (safeBounds.minX + safeBounds.maxX) / 2
743
+ : (safeBounds.x || 0) + (safeBounds.width || ATLAS_WORLD_WIDTH) / 2;
744
+ var centerY = (safeBounds.minY != null && safeBounds.maxY != null)
745
+ ? (safeBounds.minY + safeBounds.maxY) / 2
746
+ : (safeBounds.y || 0) + (safeBounds.height || ATLAS_WORLD_HEIGHT) / 2;
747
+
748
+ return clampAtlasViewport({
749
+ x: size.width / 2 - scale * (centerX / ATLAS_WORLD_WIDTH * size.width),
750
+ y: size.height / 2 - scale * (centerY / ATLAS_WORLD_HEIGHT * size.height),
751
+ scale: scale
752
+ }, size, opts);
753
+ }
754
+
755
+ function centerAtlasViewportOnPoint(point, viewportSize, scale, options) {
756
+ var safePoint = point && typeof point === "object" ? point : { x: ATLAS_WORLD_WIDTH / 2, y: ATLAS_WORLD_HEIGHT / 2 };
757
+ var size = normalizeAtlasViewportSize(viewportSize);
758
+ var viewportScale = clampAtlasNumber(scale, 1, ATLAS_MIN_SCALE, ATLAS_MAX_SCALE);
759
+ return clampAtlasViewport({
760
+ x: size.width / 2 - viewportScale * (safePoint.x / ATLAS_WORLD_WIDTH * size.width),
761
+ y: size.height / 2 - viewportScale * (safePoint.y / ATLAS_WORLD_HEIGHT * size.height),
762
+ scale: viewportScale
763
+ }, size, options);
764
+ }
765
+
766
+ function zoomAtlasViewport(viewport, factor, screenPoint, viewportSize, options) {
767
+ var size = normalizeAtlasViewportSize(viewportSize);
768
+ var safe = normalizeAtlasViewport(viewport);
769
+ var point = screenPoint && typeof screenPoint === "object"
770
+ ? { x: clampAtlasNumber(screenPoint.x, size.width / 2, 0, size.width), y: clampAtlasNumber(screenPoint.y, size.height / 2, 0, size.height) }
771
+ : { x: size.width / 2, y: size.height / 2 };
772
+ var zoomFactor = clampAtlasNumber(factor, 1, 0.2, 5);
773
+ var opts = options && typeof options === "object" ? options : {};
774
+ var minScale = clampAtlasNumber(opts.minScale, ATLAS_MIN_SCALE, 0.1, ATLAS_MAX_SCALE);
775
+ var maxScale = clampAtlasNumber(opts.maxScale, ATLAS_MAX_SCALE, minScale, 10);
776
+ var nextScale = clampAtlasNumber(safe.scale * zoomFactor, safe.scale, minScale, maxScale);
777
+ var ratio = nextScale / safe.scale;
778
+ return clampAtlasViewport({
779
+ x: point.x - (point.x - safe.x) * ratio,
780
+ y: point.y - (point.y - safe.y) * ratio,
781
+ scale: nextScale
782
+ }, size, opts);
783
+ }
784
+
785
+ function atlasViewportRect(viewport, viewportSize) {
786
+ var size = normalizeAtlasViewportSize(viewportSize);
787
+ var safe = normalizeAtlasViewport(viewport);
788
+ var x = (0 - safe.x) / safe.scale / size.width * ATLAS_WORLD_WIDTH;
789
+ var y = (0 - safe.y) / safe.scale / size.height * ATLAS_WORLD_HEIGHT;
790
+ var width = size.width / safe.scale / size.width * ATLAS_WORLD_WIDTH;
791
+ var height = size.height / safe.scale / size.height * ATLAS_WORLD_HEIGHT;
792
+ var minX = clampAtlasNumber(x, 0, 0, ATLAS_WORLD_WIDTH);
793
+ var minY = clampAtlasNumber(y, 0, 0, ATLAS_WORLD_HEIGHT);
794
+ var maxX = clampAtlasNumber(x + width, ATLAS_WORLD_WIDTH, 0, ATLAS_WORLD_WIDTH);
795
+ var maxY = clampAtlasNumber(y + height, ATLAS_WORLD_HEIGHT, 0, ATLAS_WORLD_HEIGHT);
796
+ return {
797
+ x: minX,
798
+ y: minY,
799
+ width: Math.max(1, maxX - minX),
800
+ height: Math.max(1, maxY - minY),
801
+ minX: minX,
802
+ minY: minY,
803
+ maxX: maxX,
804
+ maxY: maxY
805
+ };
806
+ }
807
+
808
+ function atlasPointToMinimap(point) {
809
+ var safePoint = point && typeof point === "object" ? point : { x: 0, y: 0 };
810
+ return {
811
+ x: MINIMAP_VIEWBOX.x + clampAtlasNumber(safePoint.x, 0, 0, ATLAS_WORLD_WIDTH) / ATLAS_WORLD_WIDTH * MINIMAP_VIEWBOX.width,
812
+ y: MINIMAP_VIEWBOX.y + clampAtlasNumber(safePoint.y, 0, 0, ATLAS_WORLD_HEIGHT) / ATLAS_WORLD_HEIGHT * MINIMAP_VIEWBOX.height
813
+ };
814
+ }
815
+
816
+ function minimapPointToAtlasPoint(point) {
817
+ var safePoint = point && typeof point === "object" ? point : { x: MINIMAP_VIEWBOX.x, y: MINIMAP_VIEWBOX.y };
818
+ return {
819
+ x: clampAtlasNumber((safePoint.x - MINIMAP_VIEWBOX.x) / MINIMAP_VIEWBOX.width * ATLAS_WORLD_WIDTH, 0, 0, ATLAS_WORLD_WIDTH),
820
+ y: clampAtlasNumber((safePoint.y - MINIMAP_VIEWBOX.y) / MINIMAP_VIEWBOX.height * ATLAS_WORLD_HEIGHT, 0, 0, ATLAS_WORLD_HEIGHT)
821
+ };
822
+ }
823
+
824
+ function atlasViewportToMinimapRect(viewport, viewportSize) {
825
+ var rect = atlasViewportRect(viewport, viewportSize);
826
+ var topLeft = atlasPointToMinimap({ x: rect.x, y: rect.y });
827
+ var bottomRight = atlasPointToMinimap({ x: rect.x + rect.width, y: rect.y + rect.height });
828
+ return {
829
+ x: topLeft.x,
830
+ y: topLeft.y,
831
+ width: Math.max(2, bottomRight.x - topLeft.x),
832
+ height: Math.max(2, bottomRight.y - topLeft.y)
833
+ };
834
+ }
835
+
836
+ function atlasEndpointId(value) {
837
+ if (value && typeof value === "object" && value.id != null) return String(value.id);
838
+ return value == null ? "" : String(value);
839
+ }
840
+
841
+ function stripAtlasMarkdown(raw) {
842
+ return String(raw || "")
843
+ .replace(/^---[\s\S]*?---\s*/m, "")
844
+ .replace(/```[\s\S]*?```/g, " ")
845
+ .replace(/!\[[^\]]*\]\([^)]+\)/g, " ")
846
+ .replace(/\[([^\]]+)\]\([^)]+\)/g, "$1")
847
+ .replace(/\[\[([^\]|]+)\|?([^\]]*)\]\]/g, function (_, target, label) {
848
+ return label || target;
849
+ })
850
+ .replace(/^#{1,6}\s+/gm, "")
851
+ .replace(/^[-*+]\s+/gm, "")
852
+ .replace(/^\d+\.\s+/gm, "")
853
+ .replace(/[*_`>#]/g, "")
854
+ .replace(/\s+/g, " ")
855
+ .trim();
856
+ }
857
+
858
+ function deriveAtlasSummary(node, content) {
859
+ var explicitSummary = node && node.summary != null ? String(node.summary).trim() : "";
860
+ if (explicitSummary) return explicitSummary.length > 170 ? explicitSummary.slice(0, 170).trim() + "…" : explicitSummary;
861
+ var summarySource = String(content || (node && node.content) || "").replace(/^#\s+.*(?:\r?\n)+/, "");
862
+ var stripped = stripAtlasMarkdown(summarySource);
863
+ if (!stripped) return "";
864
+ return stripped.length > 170 ? stripped.slice(0, 170).trim() + "…" : stripped;
865
+ }
866
+
867
+ function normalizeAtlasNode(rawNode, index) {
868
+ var raw = rawNode && typeof rawNode === "object" ? rawNode : {};
869
+ var id = raw.id == null ? "node-" + index : String(raw.id);
870
+ var label = raw.label == null || String(raw.label).trim() === "" ? id : String(raw.label).trim();
871
+ var content = raw.content == null ? "" : String(raw.content);
872
+ var type = normalizeAtlasType(raw.type);
873
+ var community = raw.community == null || raw.community === "" ? "_none" : String(raw.community);
874
+ var x = Number(raw.x);
875
+ var y = Number(raw.y);
876
+ var hasX = (typeof raw.x === "number" || (typeof raw.x === "string" && raw.x.trim() !== "")) && Number.isFinite(x);
877
+ var hasY = (typeof raw.y === "number" || (typeof raw.y === "string" && raw.y.trim() !== "")) && Number.isFinite(y);
878
+ return {
879
+ id: id,
880
+ label: label,
881
+ type: type,
882
+ type_label: atlasTypeLabel(type),
883
+ kind: atlasNodeKind(type),
884
+ community: community,
885
+ source_path: raw.source_path || raw.source || raw.path || "",
886
+ confidence: normalizeAtlasConfidence(raw.confidence || raw.type_confidence),
887
+ confidence_label: atlasConfidenceLabel(raw.confidence || raw.type_confidence),
888
+ content: content,
889
+ summary: deriveAtlasSummary(raw, content),
890
+ unavailable: raw.unavailable === true || raw.available === false,
891
+ degree: 0,
892
+ weight: clampAtlasNumber(raw.weight != null ? raw.weight : raw.score, 50, 0, 100),
893
+ priority: 0,
894
+ idx: index,
895
+ x: hasX ? x : null,
896
+ y: hasY ? y : null
897
+ };
898
+ }
899
+
900
+ function normalizeAtlasEdge(rawEdge, index) {
901
+ var raw = rawEdge && typeof rawEdge === "object" ? rawEdge : {};
902
+ var sourceId = atlasEndpointId(raw.from != null ? raw.from : raw.source);
903
+ var targetId = atlasEndpointId(raw.to != null ? raw.to : raw.target);
904
+ return {
905
+ id: raw.id == null ? "edge-" + index : String(raw.id),
906
+ source: sourceId,
907
+ target: targetId,
908
+ from: sourceId,
909
+ to: targetId,
910
+ type: normalizeAtlasConfidence(raw.type || raw.confidence),
911
+ confidence_label: atlasConfidenceLabel(raw.type || raw.confidence),
912
+ weight: clampAtlasNumber(raw.weight, 0.6, 0, 1),
913
+ signals: raw.signals && typeof raw.signals === "object" ? raw.signals : {},
914
+ source_signal_available: raw.source_signal_available === true
915
+ };
916
+ }
917
+
918
+ function buildAtlasSearchHaystack(node) {
919
+ return [
920
+ node && node.label,
921
+ node && node.id,
922
+ node && node.type_label,
923
+ node && node.source_path,
924
+ node && node.summary,
925
+ node && stripAtlasMarkdown(node.content)
926
+ ].join("\n").toLowerCase();
927
+ }
928
+
929
+ function buildAtlasSearchIndex(nodes) {
930
+ if (!Array.isArray(nodes)) return [];
931
+ return nodes.map(function (node) {
932
+ return { node: node, haystack: buildAtlasSearchHaystack(node) };
933
+ });
934
+ }
935
+
936
+ function deriveAtlasCommunities(rawGraph, nodes, communityById) {
937
+ var learning = normalizeLearning(rawGraph && rawGraph.learning);
938
+ var fromLearning = Array.isArray(learning.communities) ? learning.communities : [];
939
+ var communities = [];
940
+ var seen = {};
941
+
942
+ fromLearning.forEach(function (community) {
943
+ if (!community || community.id == null) return;
944
+ var id = String(community.id);
945
+ var derived = communityById[id] || { nodes: [] };
946
+ seen[id] = true;
947
+ communities.push({
948
+ id: id,
949
+ label: community.label || id,
950
+ node_count: Number.isFinite(Number(community.node_count)) ? Number(community.node_count) : derived.nodes.length,
951
+ source_count: Number.isFinite(Number(community.source_count)) ? Number(community.source_count) : 0,
952
+ is_primary: community.is_primary === true,
953
+ recommended_start_node_id: community.recommended_start_node_id || null,
954
+ color_index: communities.length
955
+ });
956
+ });
957
+
958
+ Object.keys(communityById).sort().forEach(function (id) {
959
+ if (seen[id]) return;
960
+ var group = communityById[id];
961
+ var topic = group.nodes.find(function (node) { return node.type === "topic"; });
962
+ communities.push({
963
+ id: id,
964
+ label: id === "_none" ? "未分组" : (topic && topic.label) || id,
965
+ node_count: group.nodes.length,
966
+ source_count: group.nodes.filter(function (node) { return node.type === "source"; }).length,
967
+ is_primary: communities.length === 0,
968
+ recommended_start_node_id: null,
969
+ color_index: communities.length
970
+ });
971
+ });
972
+
973
+ communities.sort(function (left, right) {
974
+ if (!!right.is_primary !== !!left.is_primary) return right.is_primary ? 1 : -1;
975
+ if ((right.node_count || 0) !== (left.node_count || 0)) return (right.node_count || 0) - (left.node_count || 0);
976
+ return String(left.label || left.id).localeCompare(String(right.label || right.id));
977
+ });
978
+ communities.forEach(function (community, index) {
979
+ community.color_index = index;
980
+ });
981
+ return communities;
982
+ }
983
+
984
+ function buildAtlasStarts(rawGraph, nodes, byId, communities) {
985
+ var starts = [];
986
+ var seen = {};
987
+ function add(id, reason) {
988
+ if (id == null) return;
989
+ var nodeId = String(id);
990
+ if (!byId[nodeId] || seen[nodeId]) return;
991
+ seen[nodeId] = true;
992
+ starts.push({ node: byId[nodeId], reason: reason || "" });
993
+ }
994
+ var learning = normalizeLearning(rawGraph && rawGraph.learning);
995
+ add(learning.entry && learning.entry.recommended_start_node_id, "全局推荐起点");
996
+ communities.forEach(function (community) {
997
+ add(community.recommended_start_node_id, community.label + " · 推荐起点");
998
+ });
999
+ nodes.slice().sort(function (left, right) {
1000
+ return (right.priority || 0) - (left.priority || 0);
1001
+ }).forEach(function (node) {
1002
+ if (starts.length < 6) add(node.id, atlasTypeLabel(node.type) + " · " + atlasConfidenceLabel(node.confidence));
1003
+ });
1004
+ return starts.slice(0, 6);
1005
+ }
1006
+
1007
+ function normalizeAtlasInsights(insights) {
1008
+ var safe = insights && typeof insights === "object" ? insights : {};
1009
+ return {
1010
+ surprising_connections: Array.isArray(safe.surprising_connections) ? safe.surprising_connections : [],
1011
+ isolated_nodes: Array.isArray(safe.isolated_nodes) ? safe.isolated_nodes : [],
1012
+ bridge_nodes: Array.isArray(safe.bridge_nodes) ? safe.bridge_nodes : [],
1013
+ sparse_communities: Array.isArray(safe.sparse_communities) ? safe.sparse_communities : [],
1014
+ meta: safe.meta && typeof safe.meta === "object" ? safe.meta : { degraded: false }
1015
+ };
1016
+ }
1017
+
1018
+ function buildAtlasModel(rawGraph) {
1019
+ var raw = rawGraph && typeof rawGraph === "object" ? rawGraph : {};
1020
+ var nodes = Array.isArray(raw.nodes) ? raw.nodes.map(normalizeAtlasNode) : [];
1021
+ var byId = {};
1022
+ var communityById = {};
1023
+ nodes.forEach(function (node) {
1024
+ byId[node.id] = node;
1025
+ if (!communityById[node.community]) communityById[node.community] = { id: node.community, nodes: [] };
1026
+ communityById[node.community].nodes.push(node);
1027
+ });
1028
+
1029
+ var edges = (Array.isArray(raw.edges) ? raw.edges : [])
1030
+ .map(normalizeAtlasEdge)
1031
+ .filter(function (edge) {
1032
+ return !!(byId[edge.source] && byId[edge.target]);
1033
+ });
1034
+
1035
+ edges.forEach(function (edge) {
1036
+ byId[edge.source].degree += 1;
1037
+ byId[edge.target].degree += 1;
1038
+ });
1039
+ nodes.forEach(function (node) {
1040
+ node.priority = node.degree * 12 + node.weight + (node.type === "topic" ? 12 : node.type === "source" ? 6 : 0);
1041
+ });
1042
+
1043
+ var communities = deriveAtlasCommunities(raw, nodes, communityById);
1044
+ var communityMap = {};
1045
+ communities.forEach(function (community) {
1046
+ communityMap[community.id] = community;
1047
+ });
1048
+
1049
+ return {
1050
+ meta: {
1051
+ wiki_title: raw.meta && raw.meta.wiki_title ? String(raw.meta.wiki_title) : "知识库",
1052
+ total_nodes: nodes.length,
1053
+ total_edges: edges.length,
1054
+ build_date: raw.meta && raw.meta.build_date ? String(raw.meta.build_date) : ""
1055
+ },
1056
+ nodes: nodes,
1057
+ edges: edges,
1058
+ byId: byId,
1059
+ communities: communities,
1060
+ communityById: communityMap,
1061
+ starts: buildAtlasStarts(raw, nodes, byId, communities),
1062
+ searchIndex: buildAtlasSearchIndex(nodes),
1063
+ insights: normalizeAtlasInsights(raw.insights)
1064
+ };
1065
+ }
1066
+
1067
+ function deriveAtlasLayout(model) {
1068
+ var safe = model && typeof model === "object" ? model : { nodes: [], communities: [] };
1069
+ var centers = [
1070
+ { x: 50, y: 48 },
1071
+ { x: 30, y: 34 },
1072
+ { x: 70, y: 36 },
1073
+ { x: 30, y: 72 },
1074
+ { x: 72, y: 70 },
1075
+ { x: 18, y: 52 },
1076
+ { x: 84, y: 52 },
1077
+ { x: 50, y: 78 }
1078
+ ];
1079
+ var communityIndex = {};
1080
+ (safe.communities || []).forEach(function (community, index) {
1081
+ communityIndex[community.id] = index;
1082
+ });
1083
+ var grouped = {};
1084
+ (safe.nodes || []).forEach(function (node) {
1085
+ if (!grouped[node.community]) grouped[node.community] = [];
1086
+ grouped[node.community].push(node);
1087
+ });
1088
+ Object.keys(grouped).forEach(function (communityId) {
1089
+ grouped[communityId].sort(function (left, right) {
1090
+ return (right.priority || 0) - (left.priority || 0);
1091
+ });
1092
+ var center = centers[(communityIndex[communityId] || 0) % centers.length];
1093
+ var count = grouped[communityId].length;
1094
+ grouped[communityId].forEach(function (node, index) {
1095
+ if (node.x != null && node.y != null && Number.isFinite(Number(node.x)) && Number.isFinite(Number(node.y))) {
1096
+ node.x = clampAtlasNumber(node.x, center.x, 5, 95);
1097
+ node.y = clampAtlasNumber(node.y, center.y, 8, 92);
1098
+ return;
1099
+ }
1100
+ var ring = Math.floor(index / 8);
1101
+ var ringIndex = index % 8;
1102
+ var angle = ((ringIndex / Math.min(8, Math.max(1, count))) * Math.PI * 2) + ring * 0.42;
1103
+ var radiusX = 7 + ring * 5 + Math.min(5, count * 0.16);
1104
+ var radiusY = 5 + ring * 4 + Math.min(4, count * 0.12);
1105
+ node.x = clampAtlasNumber(center.x + Math.cos(angle) * radiusX, center.x, 5, 95);
1106
+ node.y = clampAtlasNumber(center.y + Math.sin(angle) * radiusY, center.y, 8, 92);
1107
+ });
1108
+ });
1109
+ return {
1110
+ nodes: (safe.nodes || []).slice(),
1111
+ edges: (safe.edges || []).slice(),
1112
+ nodePositions: (safe.nodes || []).reduce(function (out, node) {
1113
+ out[node.id] = { x: node.x, y: node.y };
1114
+ return out;
1115
+ }, {})
1116
+ };
1117
+ }
1118
+
1119
+ function getAtlasDensityMode(count) {
1120
+ var nodeCount = Number.isFinite(Number(count)) ? Number(count) : 0;
1121
+ if (nodeCount > 500) return "overview";
1122
+ if (nodeCount > 200) return "point-plus-focus";
1123
+ if (nodeCount > 80) return "compact-card";
1124
+ return "card";
1125
+ }
1126
+
1127
+ function atlasLabelBudget(mode, count) {
1128
+ if (mode === "overview") return 40;
1129
+ if (mode === "point-plus-focus") return 60;
1130
+ if (mode === "compact-card") return Math.min(120, count);
1131
+ return count;
1132
+ }
1133
+
1134
+ function atlasEdgeBudget(mode, count) {
1135
+ if (mode === "overview") return 1000;
1136
+ if (mode === "point-plus-focus") return 800;
1137
+ return count;
1138
+ }
1139
+
1140
+ function resolveAtlasVisibleSnapshot(model, layout, uiState) {
1141
+ var safeModel = model && typeof model === "object" ? model : buildAtlasModel({});
1142
+ var safeUI = uiState && typeof uiState === "object" ? uiState : {};
1143
+ var activeCommunityId = safeUI.activeCommunityId == null ? "all" : String(safeUI.activeCommunityId);
1144
+ var query = typeof safeUI.query === "string" ? safeUI.query.trim().toLowerCase() : "";
1145
+ var focusMode = safeUI.focusMode || "all";
1146
+ var selectedNodeId = safeUI.selectedNodeId == null ? null : String(safeUI.selectedNodeId);
1147
+ var filters = safeUI.filters && typeof safeUI.filters === "object" ? safeUI.filters : {};
1148
+
1149
+ var baseNodes = safeModel.nodes.filter(function (node) {
1150
+ if (activeCommunityId !== "all" && node.community !== activeCommunityId) return false;
1151
+ if (focusMode === "source" && node.type !== "source") return false;
1152
+ return true;
1153
+ });
1154
+
1155
+ if (focusMode === "core" && baseNodes.length > 8) {
1156
+ var keepCount = Math.max(8, Math.ceil(baseNodes.length * 0.45));
1157
+ var keep = {};
1158
+ baseNodes.slice().sort(function (left, right) {
1159
+ return (right.priority || 0) - (left.priority || 0);
1160
+ }).slice(0, keepCount).forEach(function (node) {
1161
+ keep[node.id] = true;
1162
+ });
1163
+ if (selectedNodeId && safeModel.byId[selectedNodeId]) keep[selectedNodeId] = true;
1164
+ baseNodes = baseNodes.filter(function (node) { return !!keep[node.id]; });
1165
+ }
1166
+
1167
+ var baseIdSet = {};
1168
+ baseNodes.forEach(function (node) { baseIdSet[node.id] = true; });
1169
+ var searchIndex = buildAtlasSearchIndex(baseNodes);
1170
+ var matchedIds = {};
1171
+ var visibleNodes = !query
1172
+ ? baseNodes
1173
+ : searchIndex.filter(function (entry) {
1174
+ return entry.haystack.indexOf(query) !== -1;
1175
+ }).map(function (entry) {
1176
+ matchedIds[entry.node.id] = true;
1177
+ return entry.node;
1178
+ });
1179
+ var visibleIdSet = {};
1180
+ visibleNodes.forEach(function (node) { visibleIdSet[node.id] = true; });
1181
+
1182
+ var visibleEdges = safeModel.edges.filter(function (edge) {
1183
+ var edgeType = edge.type || "EXTRACTED";
1184
+ if (filters[edgeType] === false) return false;
1185
+ return !!(visibleIdSet[edge.source] && visibleIdSet[edge.target]);
1186
+ });
1187
+
1188
+ var densityMode = getAtlasDensityMode(visibleNodes.length);
1189
+ var labelBudget = atlasLabelBudget(densityMode, visibleNodes.length);
1190
+ var labelNodeIds = {};
1191
+ var startNodeIds = {};
1192
+ var importantNodeIds = {};
1193
+ var visibleStartEntries = safeModel.starts.filter(function (entry) {
1194
+ return !!(entry && entry.node && visibleIdSet[entry.node.id]) &&
1195
+ (activeCommunityId === "all" || entry.node.community === activeCommunityId);
1196
+ });
1197
+
1198
+ visibleStartEntries.forEach(function (entry) {
1199
+ startNodeIds[entry.node.id] = true;
1200
+ importantNodeIds[entry.node.id] = true;
1201
+ });
1202
+
1203
+ visibleNodes.slice().sort(function (left, right) {
1204
+ return (right.priority || 0) - (left.priority || 0);
1205
+ }).slice(0, Math.max(0, Math.min(8, Math.ceil(visibleNodes.length * 0.08)))).forEach(function (node) {
1206
+ importantNodeIds[node.id] = true;
1207
+ });
1208
+
1209
+ visibleNodes.slice().sort(function (left, right) {
1210
+ var leftForced = (selectedNodeId === left.id || matchedIds[left.id] || importantNodeIds[left.id]) ? 1 : 0;
1211
+ var rightForced = (selectedNodeId === right.id || matchedIds[right.id] || importantNodeIds[right.id]) ? 1 : 0;
1212
+ if (rightForced !== leftForced) return rightForced - leftForced;
1213
+ return (right.priority || 0) - (left.priority || 0);
1214
+ }).slice(0, labelBudget).forEach(function (node) {
1215
+ labelNodeIds[node.id] = true;
1216
+ });
1217
+ if (selectedNodeId && visibleIdSet[selectedNodeId]) labelNodeIds[selectedNodeId] = true;
1218
+ Object.keys(matchedIds).forEach(function (id) {
1219
+ if (visibleIdSet[id]) {
1220
+ labelNodeIds[id] = true;
1221
+ importantNodeIds[id] = true;
1222
+ }
1223
+ });
1224
+ Object.keys(startNodeIds).forEach(function (id) {
1225
+ if (visibleIdSet[id]) labelNodeIds[id] = true;
1226
+ });
1227
+ if (selectedNodeId && visibleIdSet[selectedNodeId]) importantNodeIds[selectedNodeId] = true;
1228
+
1229
+ var edgeBudget = atlasEdgeBudget(densityMode, visibleEdges.length);
1230
+ visibleEdges = visibleEdges.slice().sort(function (left, right) {
1231
+ var leftSelected = selectedNodeId && (left.source === selectedNodeId || left.target === selectedNodeId) ? 1 : 0;
1232
+ var rightSelected = selectedNodeId && (right.source === selectedNodeId || right.target === selectedNodeId) ? 1 : 0;
1233
+ if (rightSelected !== leftSelected) return rightSelected - leftSelected;
1234
+ return (right.weight || 0) - (left.weight || 0);
1235
+ }).slice(0, edgeBudget);
1236
+
1237
+ return {
1238
+ node_ids: visibleNodes.map(function (node) { return node.id; }),
1239
+ nodes: visibleNodes,
1240
+ edges: visibleEdges,
1241
+ links: visibleEdges,
1242
+ searchIndex: searchIndex,
1243
+ densityMode: densityMode,
1244
+ labelNodeIds: labelNodeIds,
1245
+ matchedNodeIds: matchedIds,
1246
+ importantNodeIds: importantNodeIds,
1247
+ startNodeIds: startNodeIds,
1248
+ starts: visibleStartEntries,
1249
+ counts: {
1250
+ visible_nodes: visibleNodes.length,
1251
+ visible_edges: visibleEdges.length,
1252
+ total_nodes: safeModel.nodes.length,
1253
+ total_edges: safeModel.edges.length,
1254
+ total_communities: safeModel.communities.length
1255
+ }
1256
+ };
1257
+ }
1258
+
1259
+ function resolveAtlasSelectedNodeId(model, visibleSnapshot, selectedNodeId) {
1260
+ var safeModel = model && typeof model === "object" ? model : buildAtlasModel({});
1261
+ var selected = selectedNodeId == null ? null : String(selectedNodeId);
1262
+ var visible = visibleSnapshot && typeof visibleSnapshot === "object" ? visibleSnapshot : null;
1263
+ var visibleIds = {};
1264
+ if (visible && Array.isArray(visible.node_ids)) {
1265
+ visible.node_ids.forEach(function (id) { visibleIds[String(id)] = true; });
1266
+ }
1267
+
1268
+ if (selected && safeModel.byId && safeModel.byId[selected] && (!visible || visibleIds[selected])) {
1269
+ return selected;
1270
+ }
1271
+ return null;
1272
+ }
1273
+
1274
+ var helpers = {
1275
+ splitLabelGraphemes: splitLabelGraphemes,
1276
+ labelCharWidth: labelCharWidth,
1277
+ measureLabelWidth: measureLabelWidth,
1278
+ truncateLabel: truncateLabel,
1279
+ cardDims: cardDims,
1280
+ createSafeStorage: createSafeStorage,
1281
+ getWikiStorageNamespace: getWikiStorageNamespace,
1282
+ defaultQueue: defaultQueue,
1283
+ normalizeQueue: normalizeQueue,
1284
+ toggleQueueFavorite: toggleQueueFavorite,
1285
+ appendQueueNote: appendQueueNote,
1286
+ summarizeQueue: summarizeQueue,
1287
+ defaultLearning: defaultLearning,
1288
+ normalizeLearning: normalizeLearning,
1289
+ resolveInitialMode: resolveInitialMode,
1290
+ getCommunityNodeIds: getCommunityNodeIds,
1291
+ getVisibleNodeIds: getVisibleNodeIds,
1292
+ getVisibleLinks: getVisibleLinks,
1293
+ buildSearchHaystack: buildSearchHaystack,
1294
+ buildSearchIndex: buildSearchIndex,
1295
+ filterLinksByTypes: filterLinksByTypes,
1296
+ applySearchToNodeIds: applySearchToNodeIds,
1297
+ applyFocusMode: applyFocusMode,
1298
+ resolveVisibleSnapshot: resolveVisibleSnapshot,
1299
+ shouldAutoOpenDrawer: shouldAutoOpenDrawer,
1300
+ buildAtlasModel: buildAtlasModel,
1301
+ deriveAtlasLayout: deriveAtlasLayout,
1302
+ resolveAtlasVisibleSnapshot: resolveAtlasVisibleSnapshot,
1303
+ resolveAtlasSelectedNodeId: resolveAtlasSelectedNodeId,
1304
+ getAtlasDensityMode: getAtlasDensityMode,
1305
+ normalizeAtlasViewport: normalizeAtlasViewport,
1306
+ atlasNodePoint: atlasNodePoint,
1307
+ getAtlasModelBounds: getAtlasModelBounds,
1308
+ clampAtlasViewport: clampAtlasViewport,
1309
+ fitAtlasViewport: fitAtlasViewport,
1310
+ centerAtlasViewportOnPoint: centerAtlasViewportOnPoint,
1311
+ zoomAtlasViewport: zoomAtlasViewport,
1312
+ atlasViewportRect: atlasViewportRect,
1313
+ atlasPointToMinimap: atlasPointToMinimap,
1314
+ minimapPointToAtlasPoint: minimapPointToAtlasPoint,
1315
+ atlasViewportToMinimapRect: atlasViewportToMinimapRect,
1316
+ atlasConfidenceLabel: atlasConfidenceLabel,
1317
+ atlasTypeLabel: atlasTypeLabel,
1318
+ atlasNodeKind: atlasNodeKind,
1319
+ stripAtlasMarkdown: stripAtlasMarkdown
1320
+ };
1321
+
1322
+ root.WikiGraphWashHelpers = helpers;
1323
+ if (typeof module !== "undefined" && module.exports) {
1324
+ module.exports = helpers;
1325
+ }
1326
+ })(typeof window !== "undefined" ? window : this);