@rcsb/rcsb-saguaro-app 6.3.2 → 6.3.4

package/lib/commonjs/RcsbUtils/TrackGenerators/Logo.js

@@ -1,49 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.Logo = void 0;
-const Assertions_1 = require("../Helpers/Assertions");
-var assertElementListDefined = Assertions_1.Assertions.assertElementListDefined;
-var assertDefined = Assertions_1.Assertions.assertDefined;
-class Logo {
-    constructor(logo) {
-        this.symbols = Object();
-        this.n = 0;
-        assertElementListDefined(logo);
-        logo.forEach(s => {
-            assertDefined(s.symbol);
-            assertDefined(s.value);
-            this.symbols[s.symbol] = s.value;
-            this.n += s.value;
-        });
-    }
-    aaTypes() {
-        return Object.keys(this.symbols);
-    }
-    /*add(aa: T): void{
-        this.symbols[aa] ++;
-        this.n ++;
-    }*/
-    get(aa) {
-        const n = this.symbols[aa];
-        assertDefined(n);
-        return n;
-    }
-    total() {
-        return this.n;
-    }
-    forEach(callback) {
-        this.aaTypes().forEach((aa, n) => {
-            callback(aa, n);
-        });
-    }
-    mode() {
-        return this.aaTypes().sort((a, b) => (this.symbols[b] - this.symbols[a]))[0];
-    }
-    frequency() {
-        return this.aaTypes().sort((a, b) => (this.symbols[b] - this.symbols[a])).map(a => ({ symbol: a, value: this.get(a) / this.n }));
-    }
-    entropy() {
-        return -this.aaTypes().map(aa => (this.get(aa) != 0 ? (this.get(aa) / this.n) * (Math.log(this.get(aa) / this.n) / Math.log(this.aaTypes().length)) : 0)).reduce((p, v) => (p + v));
-    }
-}
-exports.Logo = Logo;

package/lib/commonjs/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.d.ts

@@ -1,14 +0,0 @@
-import { AnnotationFeatures } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
-import { RcsbFvTooltipInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvTooltip/RcsbFvTooltipInterface";
-import { ExternalTrackBuilderInterface } from "../../RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface";
-export declare function addUnmodeledTrackBuilder(unmodeledTrackBuilder: UnmodeledTrackBuilder, externalTrackBuilder?: ExternalTrackBuilderInterface): ExternalTrackBuilderInterface;
-export declare class UnmodeledTrackBuilder {
-    private readonly unmodeledDescription;
-    filterFeatures(data: {
-        annotations: Array<AnnotationFeatures>;
-        rcsbContext?: Partial<PolymerEntityInstanceInterface>;
-    }): Promise<Array<AnnotationFeatures>>;
-    getTooltip(): RcsbFvTooltipInterface;
-    private buildUnobserved;
-}

package/lib/commonjs/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.js

@@ -1,105 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.UnmodeledTrackBuilder = void 0;
-exports.addUnmodeledTrackBuilder = addUnmodeledTrackBuilder;
-const tslib_1 = require("tslib");
-const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
-const lodash_1 = require("lodash");
-const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
-const RcsbFvTooltip_1 = require("../../RcsbFvWeb/RcsbFvTooltip/RcsbFvTooltip");
-function addUnmodeledTrackBuilder(unmodeledTrackBuilder, externalTrackBuilder) {
-    const trackBuilder = (data) => tslib_1.__awaiter(this, void 0, void 0, function* () {
-        var _a, _b;
-        return [
-            ...(_b = yield ((_a = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _a === void 0 ? void 0 : _a.call(externalTrackBuilder, data))) !== null && _b !== void 0 ? _b : [],
-            ...yield unmodeledTrackBuilder.filterFeatures(data)
-        ];
-    });
-    return Object.assign(Object.assign({}, externalTrackBuilder), { filterFeatures: (data) => tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c;
-            (_a = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _a === void 0 ? void 0 : _a.call(externalTrackBuilder, data);
-            return trackBuilder({
-                annotations: (_c = yield ((_b = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _b === void 0 ? void 0 : _b.call(externalTrackBuilder, data))) !== null && _c !== void 0 ? _c : data.annotations,
-                rcsbContext: data.rcsbContext
-            });
-        }) });
-}
-class UnmodeledTrackBuilder {
-    constructor() {
-        this.unmodeledDescription = new Map();
-    }
-    filterFeatures(data) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            if (!data.rcsbContext)
-                return data.annotations;
-            return [
-                ...yield this.buildUnobserved(data.annotations, data.rcsbContext),
-                ...filterUnobserved(data.annotations)
-            ];
-        });
-    }
-    getTooltip() {
-        return new UnobservedToolTip(this.unmodeledDescription);
-    }
-    buildUnobserved(annotations, rcsbContext) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
-            const nInstances = (yield RcsbRequestContextManager_1.rcsbRequestCtxManager.getEntityProperties((_a = rcsbContext.entityId) !== null && _a !== void 0 ? _a : "none"))[0].instances.length;
-            const featurePositions = Array.from(annotations.filter(ann => {
-                var _a, _b, _c;
-                return (_c = (_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.filter(f => (f === null || f === void 0 ? void 0 : f.type) == GqlTypes_1.Type.UnobservedResidueXyz)) === null || _b === void 0 ? void 0 : _b.length) !== null && _c !== void 0 ? _c : 0 > 0;
-            }).map(ann => {
-                var _a, _b;
-                return (_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.filter((f) => (f === null || f === void 0 ? void 0 : f.type) == GqlTypes_1.Type.UnobservedResidueXyz)) !== null && _b !== void 0 ? _b : [];
-            }).flat().map(feature => {
-                var _a, _b;
-                return (_b = (_a = feature.feature_positions) === null || _a === void 0 ? void 0 : _a.filter((p) => typeof p != "undefined")) !== null && _b !== void 0 ? _b : [];
-            }).flat().map(p => p.beg_seq_id && p.end_seq_id ? (0, lodash_1.range)(p.beg_seq_id, p.end_seq_id + 1) : []).flat().reduce((map, idx) => { var _a; return map.set(idx, ((_a = map.get(idx)) !== null && _a !== void 0 ? _a : 0) + 1); }, new Map).entries()).map(([idx, unobserved]) => {
-                this.unmodeledDescription.set(`${rcsbContext.entityId}:${idx}`, [unobserved, nInstances]);
-                return {
-                    beg_seq_id: idx,
-                    values: [Math.round(unobserved / nInstances * 100) / 100]
-                };
-            });
-            return [{
-                    source: GqlTypes_1.Source.PdbEntity,
-                    target_id: rcsbContext.entityId,
-                    features: [{
-                            type: UNMODELED,
-                            feature_positions: featurePositions
-                        }]
-                }];
-        });
-    }
-}
-exports.UnmodeledTrackBuilder = UnmodeledTrackBuilder;
-class UnobservedToolTip {
-    constructor(trackDescription) {
-        this.regularTooltip = new RcsbFvTooltip_1.RcsbFvTooltip();
-        this.trackDescription = trackDescription;
-    }
-    showTooltip(d) {
-        return this.regularTooltip.showTooltip(d);
-    }
-    showTooltipDescription(d) {
-        if (d.title == UNMODELED)
-            return this.overloadTooltipDescription(d);
-        return this.regularTooltip.showTooltipDescription(d);
-    }
-    overloadTooltipDescription(d) {
-        var _a;
-        if (!this.trackDescription.has(`${d.sourceId}:${d.begin}`))
-            return undefined;
-        const tooltipDescriptionDiv = document.createElement("div");
-        const [unobserved, total] = (_a = this.trackDescription.get(`${d.sourceId}:${d.begin}`)) !== null && _a !== void 0 ? _a : [0, 0];
-        tooltipDescriptionDiv.append(`Unmodeled in ${unobserved} of ${total} chains`);
-        return tooltipDescriptionDiv;
-    }
-}
-function filterUnobserved(annotations) {
-    return annotations.map(ann => {
-        var _a;
-        return Object.assign(Object.assign({}, ann), { features: (_a = ann.features) === null || _a === void 0 ? void 0 : _a.filter(f => (f === null || f === void 0 ? void 0 : f.type) != GqlTypes_1.Type.UnobservedResidueXyz && (f === null || f === void 0 ? void 0 : f.type) != GqlTypes_1.Type.UnobservedAtomXyz) });
-    });
-}
-const UNMODELED = "UNMODELED";

package/lib/commonjs/RcsbUtils/Translators/AssemblyInterfacesTranslate.d.ts

@@ -1,8 +0,0 @@
-import { AssemblyInterfacesInterface } from "../../RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector";
-export declare class AssemblyInterfacesTranslate {
-    private readonly rawData;
-    private interfaceMap;
-    constructor(data: Array<AssemblyInterfacesInterface>);
-    getInterfaces(assemblyId: string): Array<string> | undefined;
-    getRawData(): Array<AssemblyInterfacesInterface>;
-}

package/lib/commonjs/RcsbUtils/Translators/AssemblyInterfacesTranslate.js

@@ -1,19 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.AssemblyInterfacesTranslate = void 0;
-class AssemblyInterfacesTranslate {
-    constructor(data) {
-        this.interfaceMap = new Map();
-        this.rawData = data;
-        data.forEach(d => {
-            this.interfaceMap.set(d.rcsbId, d.interfaceIds);
-        });
-    }
-    getInterfaces(assemblyId) {
-        return this.interfaceMap.get(assemblyId);
-    }
-    getRawData() {
-        return this.rawData;
-    }
-}
-exports.AssemblyInterfacesTranslate = AssemblyInterfacesTranslate;

package/lib/commonjs/RcsbUtils/Translators/EntryAssemblyTranslate.d.ts

@@ -1,6 +0,0 @@
-import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
-export declare class EntryAssemblyTranslate {
-    private readonly rawData;
-    constructor(data: Map<string, Array<PolymerEntityInstanceInterface>>);
-    getData(): Map<string, Array<PolymerEntityInstanceInterface>>;
-}

package/lib/commonjs/RcsbUtils/Translators/EntryAssemblyTranslate.js

@@ -1,12 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.EntryAssemblyTranslate = void 0;
-class EntryAssemblyTranslate {
-    constructor(data) {
-        this.rawData = data;
-    }
-    getData() {
-        return this.rawData;
-    }
-}
-exports.EntryAssemblyTranslate = EntryAssemblyTranslate;

package/lib/commonjs/RcsbUtils/Translators/InterfaceInstanceTranslate.d.ts

@@ -1,10 +0,0 @@
-import { InterfaceInstanceInterface } from "../../RcsbCollectTools/DataCollectors/InterfaceInstanceCollector";
-export declare class InterfaceInstanceTranslate {
-    private readonly rawData;
-    private readonly instances;
-    private readonly operatorsIds;
-    constructor(data: Array<InterfaceInstanceInterface>);
-    getInstances(rcsbId: string): [string, string] | undefined;
-    getOperatorIds(rcsbId: string): [Array<Array<string>>, Array<Array<string>>] | undefined;
-    getRawData(): Array<InterfaceInstanceInterface>;
-}

package/lib/commonjs/RcsbUtils/Translators/InterfaceInstanceTranslate.js

@@ -1,24 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.InterfaceInstanceTranslate = void 0;
-class InterfaceInstanceTranslate {
-    constructor(data) {
-        this.instances = new Map();
-        this.operatorsIds = new Map();
-        this.rawData = data;
-        data.forEach(d => {
-            this.instances.set(d.rcsbId, d.asymIds);
-            this.operatorsIds.set(d.rcsbId, d.operatorIds);
-        });
-    }
-    getInstances(rcsbId) {
-        return this.instances.get(rcsbId);
-    }
-    getOperatorIds(rcsbId) {
-        return this.operatorsIds.get(rcsbId);
-    }
-    getRawData() {
-        return this.rawData;
-    }
-}
-exports.InterfaceInstanceTranslate = InterfaceInstanceTranslate;

package/lib/commonjs/RcsbUtils/Translators/MultipleEntityInstanceTranslate.d.ts

@@ -1,10 +0,0 @@
-import { PolymerEntityInstanceTranslate } from "./PolymerEntityInstanceTranslate";
-import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
-export declare class MultipleEntityInstanceTranslate {
-    private readonly entityInstanceTranslateMap;
-    add(data: Array<PolymerEntityInstanceInterface>): void;
-    getEntity(entityId: string): PolymerEntityInstanceTranslate | undefined;
-    getEntities(): Array<string>;
-    getEntries(): Array<string>;
-    getInstances(): Array<string>;
-}

package/lib/commonjs/RcsbUtils/Translators/MultipleEntityInstanceTranslate.js

@@ -1,37 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.MultipleEntityInstanceTranslate = void 0;
-const PolymerEntityInstanceTranslate_1 = require("./PolymerEntityInstanceTranslate");
-const Operator_1 = require("../Helpers/Operator");
-const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
-class MultipleEntityInstanceTranslate {
-    constructor() {
-        this.entityInstanceTranslateMap = new Map();
-    }
-    add(data) {
-        const entryEntityInstanceMapList = new Map();
-        data.forEach(d => {
-            var _a;
-            const entityId = d.entryId + TagDelimiter_1.TagDelimiter.entity + d.entityId;
-            if (!entryEntityInstanceMapList.has(entityId))
-                entryEntityInstanceMapList.set(entityId, new Array());
-            (_a = entryEntityInstanceMapList.get(entityId)) === null || _a === void 0 ? void 0 : _a.push(d);
-        });
-        entryEntityInstanceMapList.forEach((v, entityId) => {
-            this.entityInstanceTranslateMap.set(entityId, new PolymerEntityInstanceTranslate_1.PolymerEntityInstanceTranslate(v));
-        });
-    }
-    getEntity(entityId) {
-        return this.entityInstanceTranslateMap.get(entityId);
-    }
-    getEntities() {
-        return Array.from(this.entityInstanceTranslateMap.keys());
-    }
-    getEntries() {
-        return Operator_1.Operator.uniqueValues(Array.from(this.entityInstanceTranslateMap.keys()).map(entityId => TagDelimiter_1.TagDelimiter.parseEntity(entityId).entryId));
-    }
-    getInstances() {
-        return Operator_1.Operator.uniqueValues(Array.from(this.entityInstanceTranslateMap.values()).map(peit => peit.getData()).flat().map(e => e.asymId));
-    }
-}
-exports.MultipleEntityInstanceTranslate = MultipleEntityInstanceTranslate;

package/lib/commonjs/RcsbUtils/Translators/PolymerEntityChromosomeTranslate.d.ts

@@ -1,5 +0,0 @@
-export declare class PolymerEntityChromosomeTranslate {
-    private readonly rawData;
-    constructor(entityMap: Map<string, Array<string>>);
-    getData(): Map<string, Array<string>>;
-}

package/lib/commonjs/RcsbUtils/Translators/PolymerEntityChromosomeTranslate.js

@@ -1,12 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.PolymerEntityChromosomeTranslate = void 0;
-class PolymerEntityChromosomeTranslate {
-    constructor(entityMap) {
-        this.rawData = entityMap;
-    }
-    getData() {
-        return this.rawData;
-    }
-}
-exports.PolymerEntityChromosomeTranslate = PolymerEntityChromosomeTranslate;

package/lib/commonjs/RcsbUtils/Translators/PolymerEntityInstanceTranslate.d.ts

@@ -1,29 +0,0 @@
-import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
-import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
-import { SequenceReference, Source } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-export interface AlignmentContextInterface {
-    queryId: string;
-    targetId: string;
-    from: SequenceReference | undefined;
-    to: SequenceReference | Source | undefined;
-    targetSequenceLength?: number;
-    querySequenceLength?: number;
-}
-export declare class PolymerEntityInstanceTranslate {
-    private readonly rawData;
-    private readonly instanceAsymToAuth;
-    private readonly instanceAuthToAsym;
-    private readonly instanceAsymToEntity;
-    private readonly entityToAsym;
-    private readonly instanceAuthResIds;
-    private readonly INDEX_NAME;
-    constructor(data: Array<PolymerEntityInstanceInterface>);
-    getData(): Array<PolymerEntityInstanceInterface>;
-    translateEntityToAsym(id: string): string[] | undefined;
-    translateAsymToEntity(id: string): string | undefined;
-    translateAsymToAuth(id: string): string | undefined;
-    translateAuthToAsym(id: string): string | undefined;
-    translateAuthResId(asymId: string, index: number): string | undefined;
-    addAuthorResIds(e: RcsbFvTrackDataElementInterface, alignmentContext: AlignmentContextInterface): RcsbFvTrackDataElementInterface;
-    private helperAddAuthorResIds;
-}

package/lib/commonjs/RcsbUtils/Translators/PolymerEntityInstanceTranslate.js

@@ -1,96 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.PolymerEntityInstanceTranslate = void 0;
-const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
-const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
-class PolymerEntityInstanceTranslate {
-    constructor(data) {
-        this.instanceAsymToAuth = new Map();
-        this.instanceAuthToAsym = new Map();
-        this.instanceAsymToEntity = new Map();
-        this.entityToAsym = new Map();
-        this.instanceAuthResIds = new Map();
-        this.INDEX_NAME = "auth";
-        this.rawData = data;
-        data.forEach(d => {
-            var _a;
-            this.instanceAsymToAuth.set(d.asymId, d.authId);
-            this.instanceAuthToAsym.set(d.authId, d.asymId);
-            this.instanceAuthResIds.set(d.asymId, d.authResId);
-            this.instanceAsymToEntity.set(d.asymId, d.entityId);
-            if (!this.entityToAsym.has(d.entityId))
-                this.entityToAsym.set(d.entityId, new Set());
-            (_a = this.entityToAsym.get(d.entityId)) === null || _a === void 0 ? void 0 : _a.add(d.asymId);
-        });
-    }
-    getData() {
-        return this.rawData;
-    }
-    translateEntityToAsym(id) {
-        const asymIds = this.entityToAsym.get(id);
-        if (asymIds)
-            return Array.from(asymIds);
-    }
-    translateAsymToEntity(id) {
-        return this.instanceAsymToEntity.get(id);
-    }
-    translateAsymToAuth(id) {
-        return this.instanceAsymToAuth.get(id);
-    }
-    translateAuthToAsym(id) {
-        return this.instanceAuthToAsym.get(id);
-    }
-    translateAuthResId(asymId, index) {
-        const autReaIds = this.instanceAuthResIds.get(asymId);
-        if (!autReaIds)
-            return undefined;
-        else if (index > autReaIds.length)
-            return undefined;
-        else if (autReaIds[index - 1])
-            return undefined;
-        else
-            return autReaIds[index - 1];
-    }
-    addAuthorResIds(e, alignmentContext) {
-        let o = e;
-        if (alignmentContext.from === GqlTypes_1.SequenceReference.PdbInstance && alignmentContext.to) {
-            const asymId = alignmentContext.queryId.split(TagDelimiter_1.TagDelimiter.instance)[1];
-            this.helperAddAuthorResIds(o, alignmentContext.from, alignmentContext.to, asymId);
-            o.indexName = this.INDEX_NAME;
-        }
-        else if (alignmentContext.to === GqlTypes_1.SequenceReference.PdbInstance && alignmentContext.from) {
-            const asymId = alignmentContext.targetId.split(TagDelimiter_1.TagDelimiter.instance)[1];
-            this.helperAddAuthorResIds(o, alignmentContext.from, alignmentContext.to, asymId);
-            o.indexName = this.INDEX_NAME;
-        }
-        return o;
-    }
-    helperAddAuthorResIds(e, reference, source, asymId) {
-        let out = e;
-        const authResIds = this.instanceAuthResIds.get(asymId);
-        if (!authResIds)
-            return out;
-        if (reference === GqlTypes_1.SequenceReference.PdbInstance || (reference === GqlTypes_1.SequenceReference.PdbEntity && source === GqlTypes_1.Source.PdbInstance)) {
-            const x = authResIds[e.begin - 1];
-            if (typeof e.end === "number" && authResIds[e.end - 1] != x) {
-                out.beginName = x;
-                out.endName = authResIds[e.end - 1];
-            }
-            else if (typeof e.end != "number" || authResIds[e.end - 1] == x) {
-                out.beginName = x;
-            }
-        }
-        else if (source === GqlTypes_1.Source.PdbInstance && e.oriBegin) {
-            const x = authResIds[e.oriBegin - 1];
-            if (typeof e.oriEnd === "number" && authResIds[e.oriEnd - 1] != x) {
-                out.oriBeginName = x;
-                out.oriEndName = authResIds[e.oriEnd - 1];
-            }
-            else if (typeof e.oriEnd != "number" || authResIds[e.oriEnd - 1] == x) {
-                out.oriBeginName = x;
-            }
-        }
-        return out;
-    }
-}
-exports.PolymerEntityInstanceTranslate = PolymerEntityInstanceTranslate;

package/lib/commonjs/app.d.ts

@@ -1,11 +0,0 @@
-export { buildEntryChromosome, buildFullChromosome, buildEntityChromosome, buildChromosome, buildEntityFv, buildEntitySummaryFv, buildSingleEntitySummaryFv, buildInstanceFv, buildInstanceSequenceFv, buildMultipleInstanceSequenceFv, buildAssemblySequenceFv, buildPairwiseAlignment, buildPfv, buildMultipleAlignmentSequenceFv, buildUniprotEntityFv, buildUniprotEntityInstanceFv, buildUniprotFv, buildGroupFv, buildSequenceIdentityAlignmentFv, buildUniprotAlignmentFv, buildDataProviderFv, unmount } from "./RcsbFvWeb/RcsbFvBuilder";
-export { rcsbRequestCtxManager as RcsbRequestContextManager } from "./RcsbRequest/RcsbRequestContextManager";
-export { RcsbFvUI } from "./RcsbExport/RcsbFvUI";
-export { FeatureType } from "./RcsbExport/FeatureType";
-export { SequenceTrackFactory } from "./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory";
-export { PositionalScoreAlignmentTrackFactory } from "./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory";
-export { PlainObservedAlignmentTrackFactory } from "./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory";
-export { PlainAlignmentTrackFactory } from "./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory";
-export { MsaAlignmentTrackFactory } from "./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory";
-export { AnnotationsTrackFactory } from "./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AnnotationsTrackFactory";
-export { AlignmentTrackFactory } from "./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory";

package/lib/commonjs/app.js

@@ -1,46 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.AlignmentTrackFactory = exports.AnnotationsTrackFactory = exports.MsaAlignmentTrackFactory = exports.PlainAlignmentTrackFactory = exports.PlainObservedAlignmentTrackFactory = exports.PositionalScoreAlignmentTrackFactory = exports.SequenceTrackFactory = exports.FeatureType = exports.RcsbFvUI = exports.RcsbRequestContextManager = exports.unmount = exports.buildDataProviderFv = exports.buildUniprotAlignmentFv = exports.buildSequenceIdentityAlignmentFv = exports.buildGroupFv = exports.buildUniprotFv = exports.buildUniprotEntityInstanceFv = exports.buildUniprotEntityFv = exports.buildMultipleAlignmentSequenceFv = exports.buildPfv = exports.buildPairwiseAlignment = exports.buildAssemblySequenceFv = exports.buildMultipleInstanceSequenceFv = exports.buildInstanceSequenceFv = exports.buildInstanceFv = exports.buildSingleEntitySummaryFv = exports.buildEntitySummaryFv = exports.buildEntityFv = exports.buildChromosome = exports.buildEntityChromosome = exports.buildFullChromosome = exports.buildEntryChromosome = void 0;
-var RcsbFvBuilder_1 = require("./RcsbFvWeb/RcsbFvBuilder");
-Object.defineProperty(exports, "buildEntryChromosome", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildEntryChromosome; } });
-Object.defineProperty(exports, "buildFullChromosome", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildFullChromosome; } });
-Object.defineProperty(exports, "buildEntityChromosome", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildEntityChromosome; } });
-Object.defineProperty(exports, "buildChromosome", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildChromosome; } });
-Object.defineProperty(exports, "buildEntityFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildEntityFv; } });
-Object.defineProperty(exports, "buildEntitySummaryFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildEntitySummaryFv; } });
-Object.defineProperty(exports, "buildSingleEntitySummaryFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildSingleEntitySummaryFv; } });
-Object.defineProperty(exports, "buildInstanceFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildInstanceFv; } });
-Object.defineProperty(exports, "buildInstanceSequenceFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildInstanceSequenceFv; } });
-Object.defineProperty(exports, "buildMultipleInstanceSequenceFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildMultipleInstanceSequenceFv; } });
-Object.defineProperty(exports, "buildAssemblySequenceFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildAssemblySequenceFv; } });
-Object.defineProperty(exports, "buildPairwiseAlignment", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildPairwiseAlignment; } });
-Object.defineProperty(exports, "buildPfv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildPfv; } });
-Object.defineProperty(exports, "buildMultipleAlignmentSequenceFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildMultipleAlignmentSequenceFv; } });
-Object.defineProperty(exports, "buildUniprotEntityFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildUniprotEntityFv; } });
-Object.defineProperty(exports, "buildUniprotEntityInstanceFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildUniprotEntityInstanceFv; } });
-Object.defineProperty(exports, "buildUniprotFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildUniprotFv; } });
-Object.defineProperty(exports, "buildGroupFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildGroupFv; } });
-Object.defineProperty(exports, "buildSequenceIdentityAlignmentFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildSequenceIdentityAlignmentFv; } });
-Object.defineProperty(exports, "buildUniprotAlignmentFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildUniprotAlignmentFv; } });
-Object.defineProperty(exports, "buildDataProviderFv", { enumerable: true, get: function () { return RcsbFvBuilder_1.buildDataProviderFv; } });
-Object.defineProperty(exports, "unmount", { enumerable: true, get: function () { return RcsbFvBuilder_1.unmount; } });
-var RcsbRequestContextManager_1 = require("./RcsbRequest/RcsbRequestContextManager");
-Object.defineProperty(exports, "RcsbRequestContextManager", { enumerable: true, get: function () { return RcsbRequestContextManager_1.rcsbRequestCtxManager; } });
-var RcsbFvUI_1 = require("./RcsbExport/RcsbFvUI");
-Object.defineProperty(exports, "RcsbFvUI", { enumerable: true, get: function () { return RcsbFvUI_1.RcsbFvUI; } });
-var FeatureType_1 = require("./RcsbExport/FeatureType");
-Object.defineProperty(exports, "FeatureType", { enumerable: true, get: function () { return FeatureType_1.FeatureType; } });
-var SequenceTrackFactory_1 = require("./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory");
-Object.defineProperty(exports, "SequenceTrackFactory", { enumerable: true, get: function () { return SequenceTrackFactory_1.SequenceTrackFactory; } });
-var PositionalScoreAlignmentTrackFactory_1 = require("./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory");
-Object.defineProperty(exports, "PositionalScoreAlignmentTrackFactory", { enumerable: true, get: function () { return PositionalScoreAlignmentTrackFactory_1.PositionalScoreAlignmentTrackFactory; } });
-var PlainObservedAlignmentTrackFactory_1 = require("./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory");
-Object.defineProperty(exports, "PlainObservedAlignmentTrackFactory", { enumerable: true, get: function () { return PlainObservedAlignmentTrackFactory_1.PlainObservedAlignmentTrackFactory; } });
-var PlainAlignmentTrackFactory_1 = require("./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory");
-Object.defineProperty(exports, "PlainAlignmentTrackFactory", { enumerable: true, get: function () { return PlainAlignmentTrackFactory_1.PlainAlignmentTrackFactory; } });
-var MsaAlignmentTrackFactory_1 = require("./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory");
-Object.defineProperty(exports, "MsaAlignmentTrackFactory", { enumerable: true, get: function () { return MsaAlignmentTrackFactory_1.MsaAlignmentTrackFactory; } });
-var AnnotationsTrackFactory_1 = require("./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AnnotationsTrackFactory");
-Object.defineProperty(exports, "AnnotationsTrackFactory", { enumerable: true, get: function () { return AnnotationsTrackFactory_1.AnnotationsTrackFactory; } });
-var AlignmentTrackFactory_1 = require("./RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory");
-Object.defineProperty(exports, "AlignmentTrackFactory", { enumerable: true, get: function () { return AlignmentTrackFactory_1.AlignmentTrackFactory; } });

package/lib/commonjs/constants.d.ts

@@ -1 +0,0 @@
-export { SearchFacets } from "./RcsbSeacrh/FacetStore/SingleFacets";

package/lib/commonjs/constants.js

@@ -1,5 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.SearchFacets = void 0;
-var SingleFacets_1 = require("./RcsbSeacrh/FacetStore/SingleFacets");
-Object.defineProperty(exports, "SearchFacets", { enumerable: true, get: function () { return SingleFacets_1.SearchFacets; } });

package/lib/commonjs/plot.d.ts

@@ -1,2 +0,0 @@
-export { buildSearchRequest, buildGroup, buildGroupMembers, buildGroupContent, buildResidueDistribution, searchQueryContextManager } from "./RcsbGroupWeb/RcsbGroupBuilder";
-export { rcsbRequestCtxManager as RcsbRequestContextManager } from "./RcsbRequest/RcsbRequestContextManager";

package/lib/commonjs/plot.js

@@ -1,12 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.RcsbRequestContextManager = exports.searchQueryContextManager = exports.buildResidueDistribution = exports.buildGroupContent = exports.buildGroupMembers = exports.buildGroup = exports.buildSearchRequest = void 0;
-var RcsbGroupBuilder_1 = require("./RcsbGroupWeb/RcsbGroupBuilder");
-Object.defineProperty(exports, "buildSearchRequest", { enumerable: true, get: function () { return RcsbGroupBuilder_1.buildSearchRequest; } });
-Object.defineProperty(exports, "buildGroup", { enumerable: true, get: function () { return RcsbGroupBuilder_1.buildGroup; } });
-Object.defineProperty(exports, "buildGroupMembers", { enumerable: true, get: function () { return RcsbGroupBuilder_1.buildGroupMembers; } });
-Object.defineProperty(exports, "buildGroupContent", { enumerable: true, get: function () { return RcsbGroupBuilder_1.buildGroupContent; } });
-Object.defineProperty(exports, "buildResidueDistribution", { enumerable: true, get: function () { return RcsbGroupBuilder_1.buildResidueDistribution; } });
-Object.defineProperty(exports, "searchQueryContextManager", { enumerable: true, get: function () { return RcsbGroupBuilder_1.searchQueryContextManager; } });
-var RcsbRequestContextManager_1 = require("./RcsbRequest/RcsbRequestContextManager");
-Object.defineProperty(exports, "RcsbRequestContextManager", { enumerable: true, get: function () { return RcsbRequestContextManager_1.rcsbRequestCtxManager; } });

package/lib/commonjs/scss/bootstrap-fv-display.module.scss

@@ -1,40 +0,0 @@
-@use "sass:meta";
-
-@use "./bootstrap-mixin.module" as styleVars;
-
-.bootstrapFvComponentScope {
-
-  @include styleVars.bootstrapRoot;
-  @include meta.load-css("bootstrap/dist/css/bootstrap.min");
-
-  * {
-    -webkit-box-sizing: content-box;
-    -moz-box-sizing: content-box;
-    box-sizing: content-box;
-  }
-  *:before,
-  *:after {
-    -webkit-box-sizing: content-box;
-    -moz-box-sizing: content-box;
-    box-sizing: content-box;
-  }
-  .nav > a {
-    font-size: 12px;
-  }
-  .tab-pane{
-    padding-top: 25px;
-  }
-  .show {
-    opacity: 1;
-  }
-  .rcsbSvg {
-    vertical-align: baseline;
-  }
-  .rcsbFvRowTitleText a {
-    text-decoration-line: none;
-  }
-  .rcsbFvRowTitleText a:hover {
-    text-decoration-line: underline;
-  }
-
-}

package/lib/commonjs/scss/bootstrap-group-display.module.scss

@@ -1,18 +0,0 @@
-@use "sass:meta";
-@use "./bootstrap-mixin.module" as styleVars;
-
-.bootstrapGroupComponentScope {
-
-    @include styleVars.bootstrapRoot;
-    @include meta.load-css("bootstrap/dist/css/bootstrap.min");
-
-    a {
-        color: #337ab7;
-        text-decoration: none;
-    }
-
-    a:hover {
-        text-decoration: underline;
-    }
-
-}