@rcsb/rcsb-saguaro-app 6.3.2 → 6.3.4

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.js

@@ -1,98 +0,0 @@
-import { __awaiter } from "tslib";
-import { jsx as _jsx, Fragment as _Fragment } from "react/jsx-runtime";
-import React from "react";
-import { Col, Container, Row } from "react-bootstrap";
-import { GroupMemberItem } from "./GroupMemberItem";
-import { SearchQueryTools as SQT } from "../../../RcsbSeacrh/SearchQueryTools";
-import { RcsbSearchMetadata } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata";
-import { ReturnType, SortDirection } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-import { rcsbRequestCtxManager } from "../../../RcsbRequest/RcsbRequestContextManager";
-import uniqid from "uniqid";
-import { TagDelimiter } from "@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter";
-export class GroupMembersGrid extends React.Component {
-    constructor() {
-        super(...arguments);
-        this.state = {
-            itemList: []
-        };
-    }
-    render() {
-        if (this.state.itemList.length > 0) {
-            return (_jsx(Container, { fluid: "md", children: Array(this.props.nRows).fill(null).map((none, i) => (_jsx(Row, { children: Array(this.props.nColumns).fill(null).map((none, j) => {
-                        const ei = this.state.itemList[i * this.props.nColumns + j];
-                        if (ei)
-                            return (_jsx(Col, { className: "p-0", children: _jsx(GroupMemberItem, { item: ei, groupId: this.props.groupId, groupProvenanceId: this.props.groupProvenanceId, searchQuery: this.props.searchQuery }) }, `${uniqid("col_")}_${j}`));
-                        else
-                            return null;
-                    }) }, `${uniqid("row_")}_${i}`))) }));
-        }
-        else
-            return _jsx(_Fragment, {});
-    }
-    componentDidMount() {
-        return __awaiter(this, void 0, void 0, function* () {
-            if (this.state.itemList.length == 0)
-                yield this.getMembersData();
-        });
-    }
-    componentDidUpdate(prevProps, prevState, snapshot) {
-        return __awaiter(this, void 0, void 0, function* () {
-            if (prevProps.index != this.props.index)
-                yield this.getMembersData();
-        });
-    }
-    getMembersData() {
-        return __awaiter(this, void 0, void 0, function* () {
-            const searchResult = yield this.searchRequest();
-            if (!(searchResult === null || searchResult === void 0 ? void 0 : searchResult.result_set))
-                return;
-            const itemList = parseItems(this.props.groupProvenanceId, this.props.groupProvenanceId === GroupProvenanceId.ProvenanceMatchingDepositGroupId ?
-                (yield rcsbRequestCtxManager.getEntryProperties(searchResult.result_set.map(m => typeof m === "string" ? m : m.identifier)))
-                :
-                    (yield rcsbRequestCtxManager.getEntityProperties(searchResult.result_set.map(m => typeof m === "string" ? m : m.identifier))));
-            const visited = new Set();
-            this.setState({
-                itemList: itemList
-                    .filter(ei => {
-                    const entityId = ei.entryId.toLowerCase() + TagDelimiter.entity + ei.entityId;
-                    if (visited.has(entityId))
-                        return false;
-                    visited.add(entityId);
-                    return true;
-                }).sort((a, b) => ((a.entryId + TagDelimiter.entity + a.entityId)).localeCompare(b.entryId + TagDelimiter.entity + b.entityId))
-            });
-        });
-    }
-    searchRequest() {
-        return __awaiter(this, void 0, void 0, function* () {
-            return yield searchRequest(this.props.groupProvenanceId, this.props.groupId, this.props.nRows * this.props.nColumns * this.props.index, this.props.nRows * this.props.nColumns, this.props.searchQuery);
-        });
-    }
-}
-function searchRequest(groupProvenanceId, groupId, start, rows, searchQuery) {
-    return __awaiter(this, void 0, void 0, function* () {
-        var _a, _b, _c, _d, _e, _f, _g, _h;
-        return yield rcsbRequestCtxManager.getSearchQuery({
-            query: (searchQuery === null || searchQuery === void 0 ? void 0 : searchQuery.query) ? SQT.addGroupNodeToSearchQuery(groupProvenanceId, groupId, searchQuery.query) : SQT.searchGroupQuery(groupProvenanceId, groupId),
-            request_options: {
-                paginate: {
-                    start: start,
-                    rows: rows
-                },
-                sort: [{
-                        sort_by: (_d = (_c = (_b = (_a = searchQuery === null || searchQuery === void 0 ? void 0 : searchQuery.request_options) === null || _a === void 0 ? void 0 : _a.group_by) === null || _b === void 0 ? void 0 : _b.ranking_criteria_type) === null || _c === void 0 ? void 0 : _c.sort_by) !== null && _d !== void 0 ? _d : RcsbSearchMetadata.RcsbEntryContainerIdentifiers.EntryId.path,
-                        direction: (_h = (_g = (_f = (_e = searchQuery === null || searchQuery === void 0 ? void 0 : searchQuery.request_options) === null || _e === void 0 ? void 0 : _e.group_by) === null || _f === void 0 ? void 0 : _f.ranking_criteria_type) === null || _g === void 0 ? void 0 : _g.direction) !== null && _h !== void 0 ? _h : SortDirection.Asc
-                    }],
-                results_content_type: SQT.searchContentType(searchQuery)
-            },
-            return_type: groupProvenanceId === GroupProvenanceId.ProvenanceMatchingDepositGroupId ? ReturnType.Entry : ReturnType.PolymerEntity
-        });
-    });
-}
-function parseItems(groupProvenanceId, propsList) {
-    return groupProvenanceId === GroupProvenanceId.ProvenanceMatchingDepositGroupId ?
-        propsList.map((o) => (Object.assign(Object.assign({}, o), { molecularWeight: o.entryMolecularWeight })))
-        :
-            propsList.map((o) => (o.instances)).flat().map((o) => (Object.assign(Object.assign({}, o), { molecularWeight: o.entityMolecularWeight })));
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.d.ts

@@ -1,31 +0,0 @@
-import React from "react";
-import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
-import { QueryResult } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchResultInterface";
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-interface RcsbGroupMembersInterface {
-    groupProvenanceId: GroupProvenanceId;
-    groupId: string;
-    searchQuery?: SearchQuery;
-    nRows: number;
-    nColumns: number;
-}
-interface RcsbGroupMembersState {
-    nPages: number;
-    selectedIndex: number;
-    searchQuery?: SearchQuery;
-}
-export declare class RcsbGroupMembersComponent extends React.Component<RcsbGroupMembersInterface, RcsbGroupMembersState> {
-    readonly state: RcsbGroupMembersState;
-    readonly groupMembersDiv: string;
-    constructor(props: RcsbGroupMembersInterface);
-    render(): JSX.Element;
-    componentDidMount(): Promise<void>;
-    componentDidUpdate(prevProps: Readonly<RcsbGroupMembersInterface>, prevState: Readonly<RcsbGroupMembersState>, snapshot?: any): Promise<void>;
-    private subscribe;
-    private updateSearchQuery;
-    private loadPages;
-    private searchRequest;
-    private slide;
-}
-export declare function searchRequest(groupProvenanceId: GroupProvenanceId, groupId: string, searchQuery?: SearchQuery): Promise<QueryResult | null>;
-export {};

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.js

@@ -1,92 +0,0 @@
-import { __awaiter } from "tslib";
-import { jsx as _jsx, Fragment as _Fragment } from "react/jsx-runtime";
-import React from "react";
-import * as classes from "../../../scss/bootstrap-group-display.module.scss";
-import { GroupMembersGrid } from "./GroupMembersGrid";
-import { SearchQueryTools as SQT } from "../../../RcsbSeacrh/SearchQueryTools";
-import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
-import { Slider } from "./Components/Slider";
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-import { SearchQueryContextManager as SQCM } from "../RcsbGroupSeacrhQuery/SearchQueryContextManager";
-import { rcsbRequestCtxManager } from "../../../RcsbRequest/RcsbRequestContextManager";
-export class RcsbGroupMembersComponent extends React.Component {
-    constructor(props) {
-        super(props);
-        this.state = {
-            nPages: 0,
-            selectedIndex: 0,
-            searchQuery: this.props.searchQuery
-        };
-        this.groupMembersDiv = "groupMembersDiv";
-    }
-    render() {
-        if (this.state.nPages > 0)
-            return (_jsx("div", { id: this.groupMembersDiv, style: { minHeight: 627 }, className: `${classes.bootstrapGroupComponentScope}`, children: _jsx(Slider, { slide: this.slide.bind(this), pages: this.state.nPages, currentPage: this.state.selectedIndex + 1, children: _jsx(GroupMembersGrid, { groupProvenanceId: this.props.groupProvenanceId, groupId: this.props.groupId, nRows: this.props.nRows, nColumns: this.props.nColumns, index: this.state.selectedIndex, searchQuery: this.state.searchQuery }) }) }));
-        else
-            return _jsx(_Fragment, {});
-    }
-    componentDidMount() {
-        return __awaiter(this, void 0, void 0, function* () {
-            this.subscribe();
-            if (this.state.nPages === 0)
-                yield this.loadPages();
-        });
-    }
-    componentDidUpdate(prevProps, prevState, snapshot) {
-        return __awaiter(this, void 0, void 0, function* () {
-            if (this.state.nPages === 0)
-                yield this.loadPages();
-        });
-    }
-    subscribe() {
-        SQCM.subscribe((o) => {
-            this.updateSearchQuery(o);
-        });
-    }
-    updateSearchQuery(sqData) {
-        this.setState({ searchQuery: sqData.searchQuery, nPages: 0, selectedIndex: 0 });
-    }
-    loadPages() {
-        return __awaiter(this, void 0, void 0, function* () {
-            const searchResult = yield this.searchRequest();
-            if (!searchResult)
-                return;
-            const nPages = Math.ceil(searchResult.total_count / (this.props.nRows * this.props.nColumns));
-            this.setState({
-                nPages: nPages,
-                selectedIndex: 0
-            });
-        });
-    }
-    searchRequest() {
-        return __awaiter(this, void 0, void 0, function* () {
-            return yield searchRequest(this.props.groupProvenanceId, this.props.groupId, this.state.searchQuery);
-        });
-    }
-    slide(action) {
-        switch (action) {
-            case "next":
-                this.setState({ selectedIndex: mod(this.state.selectedIndex + 1, this.state.nPages) });
-                break;
-            case "prev":
-                this.setState({ selectedIndex: mod(this.state.selectedIndex - 1, this.state.nPages) });
-                break;
-        }
-    }
-}
-export function searchRequest(groupProvenanceId, groupId, searchQuery) {
-    return __awaiter(this, void 0, void 0, function* () {
-        return yield rcsbRequestCtxManager.getSearchQuery({
-            query: searchQuery && searchQuery.query ? SQT.addGroupNodeToSearchQuery(groupProvenanceId, groupId, searchQuery.query) : SQT.searchGroupQuery(groupProvenanceId, groupId),
-            request_options: {
-                return_counts: true,
-                results_content_type: SQT.searchContentType(searchQuery)
-            },
-            return_type: groupProvenanceId === GroupProvenanceId.ProvenanceMatchingDepositGroupId ? ReturnType.Entry : ReturnType.PolymerEntity
-        });
-    });
-}
-function mod(n, p) {
-    const r = n % p;
-    return r < 0 ? p + r : r;
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/RcsbGroupSeacrhQueryComponent.d.ts

@@ -1,6 +0,0 @@
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
-export declare class SearchQueryComponentFactory {
-    private static unique;
-    static getGroupSearchComponent(groupProvenanceId: GroupProvenanceId, groupId: string, searchQuery?: SearchQuery): JSX.Element;
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/RcsbGroupSeacrhQueryComponent.js

@@ -1,86 +0,0 @@
-import { __awaiter } from "tslib";
-import { jsx as _jsx, Fragment as _Fragment, jsxs as _jsxs } from "react/jsx-runtime";
-import React from "react";
-import { actionIcon } from "../RcsbGroupMembers/Components/Slider";
-import { SearchQueryContextManager as SQCM } from "./SearchQueryContextManager";
-import { UrlTools } from "../../../RcsbUtils/Helpers/UrlTools";
-import Draggable from 'react-draggable';
-export class SearchQueryComponentFactory {
-    static getGroupSearchComponent(groupProvenanceId, groupId, searchQuery) {
-        if (SearchQueryComponentFactory.unique) {
-            SearchQueryComponentFactory.unique = false;
-            return _jsx(RcsbGroupSearchQueryComponent, { groupProvenanceId: groupProvenanceId, groupId: groupId, searchQuery: searchQuery });
-        }
-        else {
-            return _jsx(_Fragment, {});
-        }
-    }
-}
-SearchQueryComponentFactory.unique = true;
-class RcsbGroupSearchQueryComponent extends React.Component {
-    constructor(props) {
-        super(props);
-        this.COMPONENT_NAME = "group-search-query-component";
-        this.URL_STATE_PARAMETER_NAME = "searchQueryState";
-        this.URL_REQUEST_PARAMETER_NAME = "request";
-        this.state = {
-            index: 0,
-            searchQueryList: [this.props.searchQuery]
-        };
-        SQCM.setConfig(Object.assign({}, this.props));
-    }
-    render() {
-        return (_jsx(Draggable, { children: _jsx("div", { className: "position-fixed", style: { zIndex: 1024, left: "calc(50% - 700px)", width: 120, top: "50%" }, children: _jsxs("div", { className: "border px-1 pt-1 shadow bg-white", children: [_jsx("div", { className: "text-center py-2 bg-secondary bg-gradient text-white", style: { cursor: "grab" }, children: "Query History" }), _jsxs("div", { className: "d-flex flex-row", style: { height: 30 }, children: [_jsx("div", { className: "text-center my-auto", onClick: () => this.browseSearchQuery(-1), children: actionIcon("prev") }), _jsxs("div", { className: "text-center text-nowrap flex-grow-1 my-auto", children: [this.state.index + 1, " / ", this.state.searchQueryList.length] }), _jsx("div", { className: "text-center my-auto", onClick: () => this.browseSearchQuery(+1), children: actionIcon("next") })] })] }) }) }));
-    }
-    componentDidMount() {
-        this.subscribe();
-        this.checkUrlState();
-    }
-    componentWillUnmount() {
-        this.unsubscribe();
-    }
-    unsubscribe() {
-        this.subscription.unsubscribe();
-    }
-    subscribe() {
-        this.subscription = SQCM.subscribe((o) => {
-            this.addSearchQuery(o);
-        });
-    }
-    checkUrlState() {
-        const urlParams = UrlTools.decodeUrlParameters();
-        if (!urlParams)
-            return;
-        const urlState = urlParams.find(p => p.key === this.URL_STATE_PARAMETER_NAME);
-        if (urlState) {
-            this.setState(urlState.value);
-            const searchQuery = urlState.value.searchQueryList[urlState.value.index];
-            if (searchQuery)
-                SQCM.setConfig({ searchQuery });
-        }
-    }
-    addSearchQuery(o) {
-        if (!o.searchQuery)
-            return;
-        if (o.searchQuery && o.attributeName != this.COMPONENT_NAME)
-            this.setState({ searchQueryList: [...this.state.searchQueryList.slice(0, this.state.index + 1), o.searchQuery], index: this.state.searchQueryList.slice(0, this.state.index + 1).length }, () => { if (o.searchQuery)
-                this.encodeUrlParameters(o.searchQuery); });
-    }
-    browseSearchQuery(n) {
-        return __awaiter(this, void 0, void 0, function* () {
-            const index = this.state.index + n;
-            if (index >= 0 && index < this.state.searchQueryList.length) {
-                this.setState({ index: index }, () => __awaiter(this, void 0, void 0, function* () {
-                    this.encodeUrlParameters(this.state.searchQueryList[this.state.index]);
-                    yield SQCM.replaceSearchQuery(this.COMPONENT_NAME, this.state.searchQueryList[this.state.index]);
-                }));
-            }
-        });
-    }
-    encodeUrlParameters(query) {
-        UrlTools.encodeUrlParameterList([
-            { key: this.URL_REQUEST_PARAMETER_NAME, value: query },
-            { key: this.URL_STATE_PARAMETER_NAME, value: this.state }
-        ]);
-    }
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/SearchQueryContextManager.d.ts

@@ -1,38 +0,0 @@
-import { Subscription } from "rxjs";
-import { ChartMapType } from "../RcsbGroupChart/GroupChartLayout";
-import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-import { ChartObjectInterface } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
-import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
-import { SearchQueryType } from "@rcsb/rcsb-search-tools/lib/SearchQueryTools/SearchQueryInterfaces";
-export interface SearchQueryContextManagerSubjectInterface {
-    attributeName: string;
-    chartMap: ChartMapType;
-    searchQuery?: SearchQuery;
-    groupId: string;
-    groupProvenanceId: GroupProvenanceId;
-}
-interface DataSubjectInterface {
-    attributeName: string;
-    chartMap: Map<string, ChartObjectInterface[][]>;
-}
-export declare class SearchQueryContextManager {
-    private static readonly searchQueryObservable;
-    private static readonly dataObservable;
-    private static readonly attributeList;
-    private static readonly currentSearchQuery;
-    private static readonly groupProvenanceId;
-    private static readonly groupId;
-    static setConfig(config: {
-        searchQuery?: SearchQuery;
-        groupProvenanceId?: GroupProvenanceId;
-        groupId?: string;
-    }): void;
-    static updateSearchQuery(attributeName: string, query: SearchQueryType, returnType: ReturnType): Promise<SearchQuery>;
-    static replaceSearchQuery(attributeName: string, searchQuery?: SearchQuery): Promise<void>;
-    static subscribe(f: (x: SearchQueryContextManagerSubjectInterface) => void, attr?: string): Subscription;
-    static dataSubscription(f: (x: DataSubjectInterface) => void, attr?: string): Subscription;
-    private static next;
-    static getAttributeList(): string[];
-}
-export {};

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/SearchQueryContextManager.js

@@ -1,91 +0,0 @@
-import { __awaiter } from "tslib";
-import { Subject } from "rxjs";
-import { cloneDeep } from "lodash";
-import { DataContainer } from "../../../RcsbUtils/Helpers/DataContainer";
-import { SearchQueryTools as SQT } from "../../../RcsbSeacrh/SearchQueryTools";
-import { GroupChartMap as GDCM } from "../RcsbGroupChart/GroupChartTools";
-export class SearchQueryContextManager {
-    static setConfig(config) {
-        if (config.searchQuery)
-            SearchQueryContextManager.currentSearchQuery.set(config.searchQuery);
-        if (config.groupId)
-            SearchQueryContextManager.groupId.set(config.groupId);
-        if (config.groupProvenanceId)
-            SearchQueryContextManager.groupProvenanceId.set(config.groupProvenanceId);
-    }
-    static updateSearchQuery(attributeName, query, returnType) {
-        return __awaiter(this, void 0, void 0, function* () {
-            const searchQuery = SearchQueryContextManager.currentSearchQuery.get();
-            const groupProvenanceId = SearchQueryContextManager.groupProvenanceId.get();
-            const groupId = SearchQueryContextManager.groupId.get();
-            if (!groupProvenanceId || !groupId)
-                throw new Error("Undefined group config");
-            const newQuery = searchQuery && searchQuery.query ?
-                SQT.buildNodeSearchQuery(searchQuery.query, query, returnType, SQT.searchContentType(searchQuery))
-                :
-                    SQT.buildSearchQuery(query, returnType);
-            const chartMap = yield GDCM.getChartMap(groupProvenanceId, groupId, newQuery);
-            SearchQueryContextManager.next({
-                chartMap: chartMap,
-                attributeName: attributeName,
-                searchQuery: newQuery,
-                groupId: groupId,
-                groupProvenanceId: groupProvenanceId
-            });
-            if (!newQuery.query)
-                throw new Error("Search query error");
-            return SQT.buildSearchQuery(SQT.addGroupNodeToSearchQuery(groupProvenanceId, groupId, newQuery.query), returnType);
-        });
-    }
-    static replaceSearchQuery(attributeName, searchQuery) {
-        return __awaiter(this, void 0, void 0, function* () {
-            const groupProvenanceId = SearchQueryContextManager.groupProvenanceId.get();
-            const groupId = SearchQueryContextManager.groupId.get();
-            if (!groupProvenanceId || !groupId)
-                return;
-            const chartMap = yield GDCM.getChartMap(groupProvenanceId, groupId, searchQuery);
-            SearchQueryContextManager.next({
-                chartMap,
-                attributeName,
-                searchQuery,
-                groupId,
-                groupProvenanceId
-            });
-        });
-    }
-    static subscribe(f, attr) {
-        if (typeof attr === "string")
-            SearchQueryContextManager.attributeList.push(attr);
-        return SearchQueryContextManager.searchQueryObservable.subscribe({
-            next: (o) => {
-                f(o);
-            }
-        });
-    }
-    static dataSubscription(f, attr) {
-        return SearchQueryContextManager.dataObservable.subscribe({
-            next: (o) => {
-                f(o);
-            }
-        });
-    }
-    static next(o) {
-        this.currentSearchQuery.set(o.searchQuery);
-        SearchQueryContextManager.searchQueryObservable.next(o);
-        SearchQueryContextManager.dataObservable.next({
-            attributeName: o.attributeName,
-            chartMap: Array.from(o.chartMap.entries()).reduce((prev, [k, v]) => {
-                return prev.set(k, v.map(v => v.data));
-            }, new Map())
-        });
-    }
-    static getAttributeList() {
-        return cloneDeep(this.attributeList);
-    }
-}
-SearchQueryContextManager.searchQueryObservable = new Subject();
-SearchQueryContextManager.dataObservable = new Subject();
-SearchQueryContextManager.attributeList = [];
-SearchQueryContextManager.currentSearchQuery = new DataContainer();
-SearchQueryContextManager.groupProvenanceId = new DataContainer();
-SearchQueryContextManager.groupId = new DataContainer();

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/RcsbResidueChartComponent.d.ts

@@ -1,17 +0,0 @@
-import React from "react";
-import { ChartMapType } from "../RcsbGroupChart/GroupChartLayout";
-import { ResidueChartInterface } from "./ResidueChartTools/ResidueChartTools";
-import { ChartDisplayConfigInterface } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
-interface RcsbResidueChartState {
-    layout: string[];
-    chartMap: ChartMapType;
-}
-export declare class RcsbResidueChartComponent extends React.Component<ResidueChartInterface & {
-    facetLayoutGrid?: string[];
-    chartDisplayConfig?: Partial<ChartDisplayConfigInterface>;
-}, RcsbResidueChartState> {
-    render(): JSX.Element;
-    componentDidMount(): Promise<void>;
-    private updateState;
-}
-export {};

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/RcsbResidueChartComponent.js

@@ -1,32 +0,0 @@
-import { __awaiter } from "tslib";
-import { jsx as _jsx, Fragment as _Fragment } from "react/jsx-runtime";
-import React from "react";
-import { GroupChartLayout } from "../RcsbGroupChart/GroupChartLayout";
-import { ResidueChartTools as RCT } from "./ResidueChartTools/ResidueChartTools";
-import * as classes from "../../../scss/bootstrap-group-display.module.scss";
-import { FacetTools } from "../../../RcsbSeacrh/FacetTools";
-export class RcsbResidueChartComponent extends React.Component {
-    render() {
-        var _a, _b;
-        if ((_b = (_a = this.state) === null || _a === void 0 ? void 0 : _a.layout) === null || _b === void 0 ? void 0 : _b.flat().filter((e) => { var _a, _b; return ((_b = (_a = this.state) === null || _a === void 0 ? void 0 : _a.chartMap) === null || _b === void 0 ? void 0 : _b.get(e)); })) {
-            return (_jsx("div", { className: classes.bootstrapGroupComponentScope, children: _jsx(GroupChartLayout, { layout: this.state.layout, chartMap: this.state.chartMap }) }));
-        }
-        return _jsx(_Fragment, {});
-    }
-    componentDidMount() {
-        return __awaiter(this, void 0, void 0, function* () {
-            yield this.updateState();
-        });
-    }
-    updateState() {
-        return __awaiter(this, void 0, void 0, function* () {
-            const charts = (yield (yield RCT.getResidueDistribution(this.props)))
-                .filter(chart => (!this.props.facetLayoutGrid || this.props.facetLayoutGrid.includes(chart.attribute)))
-                .map(ch => { var _a; return FacetTools.addChartDisplayConfig(ch, (_a = this.props.chartDisplayConfig) !== null && _a !== void 0 ? _a : {}); });
-            this.setState({
-                layout: charts.map(c => c.attribute),
-                chartMap: charts.reduce((prev, curr) => (prev.set(curr.attribute, [curr])), new Map())
-            });
-        });
-    }
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/DistributionChartFactoryImpl/DistributionChartFactory.d.ts

@@ -1,8 +0,0 @@
-import { DistributionChartFactoryInterface, ResidueDistributionInterface } from "../ResidueDistributionFactoryInterface";
-import { RcsbChartInterface } from "../../../../../RcsbSeacrh/FacetTools";
-import { RcsbDistributionConfig } from "../../../../../RcsbAnnotationConfig/RcsbDistributionConfig";
-export declare class DistributionChartFactory implements DistributionChartFactoryInterface {
-    private readonly distributionConfig;
-    constructor(distributionConfig?: RcsbDistributionConfig);
-    getChart(residueDistribution: ResidueDistributionInterface): RcsbChartInterface;
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/DistributionChartFactoryImpl/DistributionChartFactory.js

@@ -1,34 +0,0 @@
-import { RcsbDistributionConfig } from "../../../../../RcsbAnnotationConfig/RcsbDistributionConfig";
-import { Operator } from "../../../../../RcsbUtils/Helpers/Operator";
-import { ChartType } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
-export class DistributionChartFactory {
-    constructor(distributionConfig) {
-        this.distributionConfig = distributionConfig !== null && distributionConfig !== void 0 ? distributionConfig : new RcsbDistributionConfig();
-    }
-    getChart(residueDistribution) {
-        var _a, _b;
-        const sort = (_a = this.distributionConfig.getBlockConfig(residueDistribution.attribute)) === null || _a === void 0 ? void 0 : _a.sort;
-        const axisLabel = (_b = this.distributionConfig.getBlockConfig(residueDistribution.attribute)) === null || _b === void 0 ? void 0 : _b.axisLabel;
-        return {
-            chartType: ChartType.barplot,
-            attribute: residueDistribution.attribute,
-            attributeName: residueDistribution.attribute,
-            contentType: "number",
-            data: residueDistribution.buckets.map(b => ({
-                label: b.label,
-                population: b.residueSet.size,
-                objectConfig: {
-                    color: b.color,
-                    objectId: b.id
-                }
-            })),
-            title: residueDistribution.title,
-            chartConfig: {
-                sort: sort ? (a, b) => (sort.findIndex(x => x === a.x) - sort.findIndex(x => x === b.x)) : undefined,
-                tooltipText: (d) => (`${Operator.digitGrouping(d.y)} residues`),
-                axisLabel,
-                domainEmptyBins: true
-            }
-        };
-    }
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/ResidueDistributionFactoryImpl/MultipleTrackDistributionFactory.d.ts

@@ -1,8 +0,0 @@
-import { ResidueDistributionFactoryInterface, ResidueDistributionInterface } from "../ResidueDistributionFactoryInterface";
-import { TrackManagerInterface } from "../../../../../RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface";
-import { RcsbDistributionConfig } from "../../../../../RcsbAnnotationConfig/RcsbDistributionConfig";
-export declare class MultipleTrackDistributionFactory implements ResidueDistributionFactoryInterface<[string, number]> {
-    private readonly distributionConfig;
-    constructor(distributionConfig?: RcsbDistributionConfig);
-    getDistribution(tracks: TrackManagerInterface[], blockType: string, numberResidues: number): ResidueDistributionInterface;
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/ResidueDistributionFactoryImpl/MultipleTrackDistributionFactory.js

@@ -1,32 +0,0 @@
-import { RcsbDistributionConfig } from "../../../../../RcsbAnnotationConfig/RcsbDistributionConfig";
-import { range } from "lodash";
-import { Assertions } from "../../../../../RcsbUtils/Helpers/Assertions";
-var assertDefined = Assertions.assertDefined;
-export class MultipleTrackDistributionFactory {
-    constructor(distributionConfig) {
-        this.distributionConfig = distributionConfig !== null && distributionConfig !== void 0 ? distributionConfig : new RcsbDistributionConfig();
-    }
-    getDistribution(tracks, blockType, numberResidues) {
-        const undefResidues = new Set(range(1, numberResidues + 1));
-        const blockConfig = this.distributionConfig.getBlockConfig(blockType);
-        assertDefined(blockConfig);
-        const undefTrack = blockConfig.undefTrack;
-        return {
-            attribute: blockConfig.type,
-            title: blockConfig.title,
-            buckets: tracks.map(track => {
-                const trackConfig = this.distributionConfig.getTrackConfig(track.getId());
-                assertDefined(trackConfig), assertDefined(trackConfig.label), assertDefined(trackConfig === null || trackConfig === void 0 ? void 0 : trackConfig.color);
-                return {
-                    label: trackConfig.label,
-                    color: trackConfig.color,
-                    id: trackConfig.type,
-                    residueSet: new Set(track.values().reduce((prev, curr) => { var _a; return (prev.concat(range(curr.begin, ((_a = curr.end) !== null && _a !== void 0 ? _a : curr.begin) + 1))); }, []).map(n => {
-                        undefResidues.delete(n);
-                        return n;
-                    }))
-                };
-            }).concat(undefTrack && undefResidues.size > 0 ? [Object.assign(Object.assign({}, undefTrack), { residueSet: undefResidues })] : [])
-        };
-    }
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/ResidueDistributionFactoryImpl/NumericalTrackDistributionFactory.d.ts

@@ -1,8 +0,0 @@
-import { ResidueDistributionFactoryInterface, ResidueDistributionInterface } from "../ResidueDistributionFactoryInterface";
-import { TrackManagerInterface } from "../../../../../RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface";
-import { RcsbDistributionConfig } from "../../../../../RcsbAnnotationConfig/RcsbDistributionConfig";
-export declare class NumericalTrackDistributionFactory implements ResidueDistributionFactoryInterface<[string, number]> {
-    private readonly distributionConfig;
-    constructor(distributionConfig?: RcsbDistributionConfig);
-    getDistribution(tracks: [TrackManagerInterface], blockType: string, numberResidues: number): ResidueDistributionInterface;
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/ResidueDistributionFactoryImpl/NumericalTrackDistributionFactory.js

@@ -1,37 +0,0 @@
-import { RcsbDistributionConfig } from "../../../../../RcsbAnnotationConfig/RcsbDistributionConfig";
-import { range } from "lodash";
-import { Assertions } from "../../../../../RcsbUtils/Helpers/Assertions";
-var assertDefined = Assertions.assertDefined;
-export class NumericalTrackDistributionFactory {
-    constructor(distributionConfig) {
-        this.distributionConfig = distributionConfig !== null && distributionConfig !== void 0 ? distributionConfig : new RcsbDistributionConfig();
-    }
-    getDistribution(tracks, blockType, numberResidues) {
-        var _a;
-        const track = tracks[0];
-        const numericalCategories = (_a = this.distributionConfig.getTrackConfig(track.getId())) === null || _a === void 0 ? void 0 : _a.numericalCategories;
-        assertDefined(numericalCategories);
-        const bucketMap = new Map();
-        const undefResidues = new Set(range(1, numberResidues + 1));
-        numericalCategories.categories.forEach(category => {
-            const label = category.label;
-            bucketMap.set(label, Object.assign(Object.assign({}, category), { residueSet: new Set() }));
-        });
-        track.forEach(ann => {
-            var _a;
-            let index = numericalCategories.thresholds.findIndex((x) => { var _a; return x >= ((_a = ann.value) !== null && _a !== void 0 ? _a : Number.MAX_SAFE_INTEGER); });
-            if (index < 0)
-                index = numericalCategories.thresholds.length;
-            const label = numericalCategories.categories[index].label;
-            (_a = bucketMap.get(label)) === null || _a === void 0 ? void 0 : _a.residueSet.add(ann.begin);
-            undefResidues.delete(ann.begin);
-        });
-        const bc = this.distributionConfig.getBlockConfig(blockType);
-        assertDefined(bc);
-        return {
-            attribute: bc.type,
-            title: bc.title,
-            buckets: Array.from(bucketMap.values()).concat(bc.undefTrack && undefResidues.size > 0 ? [Object.assign(Object.assign({}, bc.undefTrack), { residueSet: undefResidues })] : [])
-        };
-    }
-}

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/ResidueDistributionFactoryImpl/TrackDistributionFactory.d.ts

@@ -1,10 +0,0 @@
-import { ResidueDistributionFactoryInterface, ResidueDistributionInterface } from "../ResidueDistributionFactoryInterface";
-import { RcsbDistributionConfig } from "../../../../../RcsbAnnotationConfig/RcsbDistributionConfig";
-import { TrackManagerInterface } from "../../../../../RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface";
-export declare class TrackDistributionFactory implements ResidueDistributionFactoryInterface<[string, number]> {
-    private readonly distributionConfig;
-    private readonly multipleTrackDistributionFactory;
-    private readonly numericalTrackDistributionFactory;
-    constructor(distributionConfig?: RcsbDistributionConfig);
-    getDistribution(tracks: TrackManagerInterface[], blockType: string, numberResidues: number): ResidueDistributionInterface | undefined;
-}