@rcsb/rcsb-saguaro-app 6.3.2 → 6.3.4

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/SelectButton.js

@@ -1,121 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.SelectButton = void 0;
-const tslib_1 = require("tslib");
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = tslib_1.__importDefault(require("react"));
-const react_select_1 = tslib_1.__importStar(require("react-select"));
-const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
-var assertDefined = Assertions_1.Assertions.assertDefined;
-class SelectButton extends react_1.default.Component {
-    constructor(props) {
-        super(props);
-        this.state = {
-            selectedOption: (this.props.options[0].options) == null ? Object.assign(Object.assign({}, (this.props.options[0])), { value: 0 }) : Object.assign(Object.assign({}, (this.props.options[0].options[0])), { value: 0 })
-        };
-        this.defaultValue = props.defaultValue;
-    }
-    change(option) {
-        this.setState({ selectedOption: option });
-    }
-    componentDidUpdate(prevProps, prevState) {
-        this.renderTitle();
-        this.state.selectedOption.onChange();
-    }
-    componentDidMount() {
-        this.renderTitle();
-        this.defaultValue = null;
-    }
-    render() {
-        return ((0, jsx_runtime_1.jsx)("div", { children: this.selectRender() }));
-    }
-    selectRender() {
-        this.currentOption = this.getSelectOpt();
-        return ((0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("div", { style: { display: "inline-block" }, children: this.selectButtonRender(this.currentOption.selectOpt, this.currentOption.index) }) }));
-    }
-    selectButtonRender(defaultValue, index) {
-        return ((0, jsx_runtime_1.jsx)("div", { id: this.props.elementId + SelectButton.BUTTON_CONTAINER_DIV_SUFFIX, children: this.innerSelectButtonRender(defaultValue, index) }));
-    }
-    innerSelectButtonRender(defaultValue, index) {
-        const SingleValue = (props) => {
-            const label = typeof props.data.shortLabel === "string" ? props.data.shortLabel : props.data.label;
-            return ((0, jsx_runtime_1.jsx)(react_select_1.components.SingleValue, Object.assign({}, props, { children: label })));
-        };
-        let options;
-        if (this.props.options[0].options == null) {
-            options = this.props.options.map((opt, index) => {
-                const props = Object.assign(Object.assign({}, opt), { value: index });
-                return props;
-            });
-        }
-        else {
-            let i = 0;
-            options = this.props.options.map((group, n) => ({
-                label: group.label,
-                options: group.options.map(opt => (Object.assign(Object.assign({}, opt), { value: i++ })))
-            }));
-        }
-        const title = typeof this.props.dropdownTitle === "string" ? (0, jsx_runtime_1.jsx)("div", { style: { color: "grey", fontWeight: "bold", fontSize: 12 }, children: this.props.dropdownTitle }) : (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, {});
-        return ((0, jsx_runtime_1.jsxs)("div", { style: { display: "inline-block" }, children: [title, (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(react_select_1.default, { options: options, isSearchable: false, onChange: this.change.bind(this), styles: this.configStyle(), components: { SingleValue, Option: this.props.optionProps ? (props) => {
-                                var _a, _b, _c;
-                                return (_c = (_b = (_a = this.props).optionProps) === null || _b === void 0 ? void 0 : _b.call(_a, Object.assign(Object.assign({}, props), { children: (0, jsx_runtime_1.jsx)(react_select_1.components.Option, Object.assign({}, props, { children: props.children })) }))) !== null && _c !== void 0 ? _c : (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, {});
-                            } : ((props) => ((0, jsx_runtime_1.jsx)(react_select_1.components.Option, Object.assign({}, props, { children: props.children })))) }, defaultValue: Object.assign(Object.assign({}, defaultValue), { value: index }) }) })] }));
-    }
-    configStyle() {
-        return {
-            control: (base) => {
-                var _a;
-                return (Object.assign(Object.assign({}, base), { width: (_a = this.props.width) !== null && _a !== void 0 ? _a : 120, border: '1px solid #ddd', boxShadow: 'none', '&:hover': {
-                        border: '1px solid #ddd',
-                    } }));
-            },
-            menu: (base) => (Object.assign(Object.assign({}, base), { width: 500 })),
-            option: (base) => (Object.assign({}, base))
-        };
-    }
-    getSelectOpt() {
-        let index = 0;
-        let selectOpt = undefined;
-        if (this.defaultValue != null) {
-            if (this.props.options[0].options == null) {
-                const n = this.props.options.findIndex(a => {
-                    return a.optId === this.defaultValue;
-                });
-                if (n >= 0) {
-                    index = n;
-                    selectOpt = this.props.options[n];
-                }
-            }
-            else if (this.props.options[0].options != null) {
-                let flag = false;
-                for (const group of this.props.options) {
-                    for (const opt of group.options) {
-                        if (opt.optId === this.defaultValue) {
-                            selectOpt = opt;
-                            flag = true;
-                            break;
-                        }
-                        index++;
-                    }
-                    if (flag) {
-                        break;
-                    }
-                }
-            }
-        }
-        else {
-            selectOpt = this.state.selectedOption;
-            index = this.props.options.findIndex(a => {
-                return a.optId === this.state.selectedOption.optId;
-            });
-        }
-        assertDefined(selectOpt);
-        return { selectOpt: selectOpt, index: index };
-    }
-    renderTitle() {
-        if (this.props.addTitle && this.currentOption.selectOpt.name)
-            this.props.renderTitle(this.currentOption.selectOpt.name);
-    }
-}
-exports.SelectButton = SelectButton;
-SelectButton.BUTTON_CONTAINER_DIV_SUFFIX = "_buttonContainerDiv";

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/SelectButtonManager.d.ts

@@ -1,17 +0,0 @@
-import { GroupedOptionsInterface, SelectOptionInterface } from "./SelectButton";
-import { SelectButtonConfigInterface } from "./ComponentsManager";
-export declare class SelectButtonManager {
-    private readonly elementId;
-    private static readonly MAIN_BUTTON_SUFFIX;
-    private static readonly ADDITIONAL_BUTTON_SUFFIX;
-    private static readonly SELECT_TITLE_DIV;
-    private readonly selectComponent;
-    constructor(elementId: string);
-    createButton(options: Array<SelectOptionInterface> | Array<GroupedOptionsInterface>, config?: SelectButtonConfigInterface): void;
-    addButton(options: Array<SelectOptionInterface> | Array<GroupedOptionsInterface>, config?: SelectButtonConfigInterface): void;
-    unmountButton(): void;
-    unmountAdditionalButton(): void;
-    private button;
-    private renderTitle;
-    private createDiv;
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/SelectButtonManager.js

@@ -1,58 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.SelectButtonManager = void 0;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const SelectButton_1 = require("./SelectButton");
-const SelectButtonTitle_1 = require("./SelectButtonTitle");
-const MountableComponent_1 = require("./MountableComponent");
-class SelectButtonManager {
-    constructor(elementId) {
-        var _a, _b, _c;
-        this.elementId = elementId;
-        const selectDiv = this.createDiv(SelectButtonManager.MAIN_BUTTON_SUFFIX);
-        const additionalDiv = this.createDiv(SelectButtonManager.ADDITIONAL_BUTTON_SUFFIX);
-        const titleDiv = this.createDiv(SelectButtonManager.SELECT_TITLE_DIV);
-        (_a = document.getElementById(this.elementId)) === null || _a === void 0 ? void 0 : _a.append(selectDiv);
-        (_b = document.getElementById(this.elementId)) === null || _b === void 0 ? void 0 : _b.append(additionalDiv);
-        (_c = document.getElementById(this.elementId)) === null || _c === void 0 ? void 0 : _c.append(titleDiv);
-        this.selectComponent = {
-            mainButton: new MountableComponent_1.MountableComponent(selectDiv),
-            additionalButton: new MountableComponent_1.MountableComponent(additionalDiv),
-            selectTitleButton: new MountableComponent_1.MountableComponent(titleDiv)
-        };
-    }
-    createButton(options, config) {
-        this.button(this.selectComponent.mainButton, options, config);
-    }
-    addButton(options, config) {
-        this.button(this.selectComponent.additionalButton, options, config);
-    }
-    unmountButton() {
-        this.selectComponent.mainButton.unmount();
-        this.selectComponent.additionalButton.unmount();
-        this.selectComponent.selectTitleButton.unmount();
-    }
-    unmountAdditionalButton() {
-        this.selectComponent.additionalButton.unmount();
-        this.selectComponent.selectTitleButton.unmount();
-    }
-    button(button, options, config) {
-        var _a;
-        button.render((0, jsx_runtime_1.jsx)(SelectButton_1.SelectButton, { elementId: this.elementId, options: options, optionProps: config === null || config === void 0 ? void 0 : config.optionProps, addTitle: (_a = config === null || config === void 0 ? void 0 : config.addTitle) !== null && _a !== void 0 ? _a : false, defaultValue: config === null || config === void 0 ? void 0 : config.defaultValue, width: config === null || config === void 0 ? void 0 : config.width, dropdownTitle: config === null || config === void 0 ? void 0 : config.dropdownTitle, isAdditionalButton: config === null || config === void 0 ? void 0 : config.isAdditionalButton, renderTitle: this.renderTitle.bind(this) }));
-    }
-    renderTitle(title) {
-        this.selectComponent.selectTitleButton.render((0, jsx_runtime_1.jsx)(SelectButtonTitle_1.SelectButtonTitle, { title: title }));
-    }
-    createDiv(suffix) {
-        var _a;
-        const div = (_a = document.getElementById(this.elementId + suffix)) !== null && _a !== void 0 ? _a : document.createElement("div");
-        const id = this.elementId + suffix;
-        div.setAttribute("id", id);
-        div.style.display = "inline-block";
-        return div;
-    }
-}
-exports.SelectButtonManager = SelectButtonManager;
-SelectButtonManager.MAIN_BUTTON_SUFFIX = "_buttonDiv";
-SelectButtonManager.ADDITIONAL_BUTTON_SUFFIX = "_additionalButtonDiv";
-SelectButtonManager.SELECT_TITLE_DIV = "_selectButtonTitleDiv";

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/SelectButtonTitle.d.ts

@@ -1,6 +0,0 @@
-import React from "react";
-export declare class SelectButtonTitle extends React.Component<{
-    title: string;
-}> {
-    render(): JSX.Element;
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/SelectButtonTitle.js

@@ -1,12 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.SelectButtonTitle = void 0;
-const tslib_1 = require("tslib");
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = tslib_1.__importDefault(require("react"));
-class SelectButtonTitle extends react_1.default.Component {
-    render() {
-        return ((0, jsx_runtime_1.jsx)("div", { style: { marginLeft: 20 }, children: this.props.title }));
-    }
-}
-exports.SelectButtonTitle = SelectButtonTitle;

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.d.ts

@@ -1,11 +0,0 @@
-import { AlignmentResponse, TargetAlignment } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
-import { AlignmentRequestContextType } from "../RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory";
-import { BlockFactoryInterface } from "./BlockFactoryInterface";
-import { TrackFactoryInterface } from "../RcsbFvTrackFactory/TrackFactoryInterface";
-export declare class AlignmentBlockFactory implements BlockFactoryInterface<[AlignmentRequestContextType, AlignmentResponse], [AlignmentRequestContextType, TargetAlignment, AlignmentResponse, number]> {
-    readonly trackFactory: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>;
-    readonly trackConfigModifier?: (alignmentContext: AlignmentRequestContextType, targetAlignment: TargetAlignment, alignmentResponse: AlignmentResponse, indexResponse: number) => Promise<Partial<RcsbFvRowConfigInterface>>;
-    constructor(alignmentTrackFactory: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>, trackModifier?: (alignmentContext: AlignmentRequestContextType, targetAlignment: TargetAlignment, alignmentResponse: AlignmentResponse, indexResponse: number) => Promise<Partial<RcsbFvRowConfigInterface>>);
-    getBlock(alignmentRequestContext: AlignmentRequestContextType, alignmentData: AlignmentResponse): Promise<RcsbFvRowConfigInterface[]>;
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.js

@@ -1,27 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.AlignmentBlockFactory = void 0;
-const tslib_1 = require("tslib");
-class AlignmentBlockFactory {
-    constructor(alignmentTrackFactory, trackModifier) {
-        this.trackFactory = alignmentTrackFactory;
-        this.trackConfigModifier = trackModifier;
-    }
-    getBlock(alignmentRequestContext, alignmentData) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
-            alignmentRequestContext = Object.assign(Object.assign({}, alignmentRequestContext), { querySequence: (_a = alignmentData.query_sequence) !== null && _a !== void 0 ? _a : undefined });
-            if (!alignmentData.target_alignment)
-                return [];
-            return (yield Promise.all(alignmentData.target_alignment.map((alignment, index) => tslib_1.__awaiter(this, void 0, void 0, function* () {
-                var _a, _b;
-                if (alignmentRequestContext.filterByTargetContains != null && !((_a = alignment === null || alignment === void 0 ? void 0 : alignment.target_id) === null || _a === void 0 ? void 0 : _a.includes(alignmentRequestContext.filterByTargetContains)))
-                    return;
-                if ((alignment === null || alignment === void 0 ? void 0 : alignment.target_sequence) == null)
-                    return;
-                return Object.assign(Object.assign({}, yield this.trackFactory.getTrack(alignmentRequestContext, alignment)), yield ((_b = this.trackConfigModifier) === null || _b === void 0 ? void 0 : _b.call(this, alignmentRequestContext, alignment, alignmentData, index)));
-            })))).filter((x) => x != undefined);
-        });
-    }
-}
-exports.AlignmentBlockFactory = AlignmentBlockFactory;

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.d.ts

@@ -1,15 +0,0 @@
-import { AnnotationFeatures } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
-import { AnnotationRequestContext } from "../../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
-import { BlockFactoryInterface } from "./BlockFactoryInterface";
-import { TrackFactoryInterface } from "../RcsbFvTrackFactory/TrackFactoryInterface";
-import { BlockManagerInterface } from "./BlockManager/BlockManagerInterface";
-import { TrackManagerInterface } from "./BlockManager/TrackManagerInterface";
-export declare class AnnotationsBlockFactory implements BlockFactoryInterface<[AnnotationRequestContext, AnnotationFeatures[]], [TrackManagerInterface]> {
-    private readonly annotationBlockManager;
-    private readonly annotationsBlockData;
-    readonly trackFactory: TrackFactoryInterface<[TrackManagerInterface]>;
-    readonly trackConfigModifier?: (trackManager: TrackManagerInterface) => Promise<Partial<RcsbFvRowConfigInterface>>;
-    constructor(annotationBlockManager: BlockManagerInterface<[AnnotationRequestContext, AnnotationFeatures[]]>, annotationTrackFactory: TrackFactoryInterface<[TrackManagerInterface]>, trackModifier?: (trackManager: TrackManagerInterface) => Promise<Partial<RcsbFvRowConfigInterface>>);
-    getBlock(annotationsRequestContext: AnnotationRequestContext, annotations: AnnotationFeatures[]): Promise<RcsbFvRowConfigInterface[]>;
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.js

@@ -1,23 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.AnnotationsBlockFactory = void 0;
-const tslib_1 = require("tslib");
-class AnnotationsBlockFactory {
-    constructor(annotationBlockManager, annotationTrackFactory, trackModifier) {
-        this.annotationsBlockData = new Array();
-        this.annotationBlockManager = annotationBlockManager;
-        this.trackFactory = annotationTrackFactory;
-        this.trackConfigModifier = trackModifier;
-    }
-    getBlock(annotationsRequestContext, annotations) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            yield this.annotationBlockManager.setData(annotationsRequestContext, annotations);
-            yield Promise.all(this.annotationBlockManager.getTracks().map((track) => tslib_1.__awaiter(this, void 0, void 0, function* () {
-                var _a;
-                this.annotationsBlockData.push(Object.assign(Object.assign({}, yield this.trackFactory.getTrack(track)), yield ((_a = this.trackConfigModifier) === null || _a === void 0 ? void 0 : _a.call(this, track))));
-            })));
-            return this.annotationsBlockData;
-        });
-    }
-}
-exports.AnnotationsBlockFactory = AnnotationsBlockFactory;

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockFactoryInterface.d.ts

@@ -1,7 +0,0 @@
-import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
-import { TrackFactoryInterface } from "../RcsbFvTrackFactory/TrackFactoryInterface";
-export interface BlockFactoryInterface<T extends any[], S extends any[]> {
-    readonly trackFactory: TrackFactoryInterface<S>;
-    readonly trackConfigModifier?: (...args: S) => Promise<Partial<RcsbFvRowConfigInterface>>;
-    getBlock(...args: T): Promise<RcsbFvRowConfigInterface[]>;
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockFactoryInterface.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.d.ts

@@ -1,21 +0,0 @@
-import { AnnotationFeatures } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { RcsbAnnotationConfig } from "../../../../RcsbAnnotationConfig/RcsbAnnotationConfig";
-import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
-import { AnnotationRequestContext } from "../../../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
-import { BlockManagerInterface } from "./BlockManagerInterface";
-import { TrackManagerFactoryInterface, TrackManagerInterface } from "./TrackManagerInterface";
-import { RcsbAnnotationConfigInterface } from "../../../../RcsbAnnotationConfig/AnnotationConfigInterface";
-export declare class AnnotationBlockManager implements BlockManagerInterface<[AnnotationRequestContext, AnnotationFeatures[]]> {
-    private readonly rcsbAnnotationConfig;
-    private readonly annotationTracks;
-    private readonly polymerEntityInstanceTranslator?;
-    private readonly trackManagerFactory;
-    constructor(trackManagerFactory: TrackManagerFactoryInterface<[string, RcsbAnnotationConfigInterface, PolymerEntityInstanceTranslate]>, rcsbAnnotationConfig: RcsbAnnotationConfig, polymerEntityInstanceTranslator?: PolymerEntityInstanceTranslate);
-    setData(requestConfig: AnnotationRequestContext, data: Array<AnnotationFeatures>): Promise<void>;
-    getTracks(): Array<TrackManagerInterface>;
-    private has;
-    private orderedTypes;
-    private processAnnotations;
-    private addFeature;
-    private mergeTracks;
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.js

@@ -1,102 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.AnnotationBlockManager = void 0;
-const tslib_1 = require("tslib");
-const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
-var assertDefined = Assertions_1.Assertions.assertDefined;
-class AnnotationBlockManager {
-    constructor(trackManagerFactory, rcsbAnnotationConfig, polymerEntityInstanceTranslator) {
-        this.annotationTracks = new Map();
-        this.trackManagerFactory = trackManagerFactory;
-        this.rcsbAnnotationConfig = rcsbAnnotationConfig;
-        this.polymerEntityInstanceTranslator = polymerEntityInstanceTranslator;
-    }
-    setData(requestConfig, data) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            yield this.processAnnotations(requestConfig, data);
-            this.mergeTracks();
-        });
-    }
-    getTracks() {
-        var _a;
-        return (_a = this.orderedTypes()
-            .filter(type => { var _a, _b; return this.has(type) && ((_b = (_a = this.annotationTracks.get(type)) === null || _a === void 0 ? void 0 : _a.size()) !== null && _b !== void 0 ? _b : 0) > 0; })
-            .map(type => this.annotationTracks.get(type))
-            .filter((track) => track != null)) !== null && _a !== void 0 ? _a : [];
-    }
-    has(type) {
-        return this.annotationTracks.has(type);
-    }
-    orderedTypes() {
-        return [
-            this.rcsbAnnotationConfig.instanceOrder(),
-            this.rcsbAnnotationConfig.entityOrder(),
-            this.rcsbAnnotationConfig.uniprotOrder(),
-            Array.from(this.annotationTracks.keys()).filter(type => !this.rcsbAnnotationConfig.allTypes().has(type))
-        ].flat();
-    }
-    processAnnotations(requestConfig, data) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b;
-            yield Promise.all(data.map(ann => {
-                var _a, _b;
-                return (_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.map((feature) => tslib_1.__awaiter(this, void 0, void 0, function* () {
-                    if (feature)
-                        return yield this.addFeature(requestConfig, ann, feature);
-                }))) !== null && _b !== void 0 ? _b : [];
-            }).flat());
-            (_b = (_a = requestConfig.annotationProcessing) === null || _a === void 0 ? void 0 : _a.computeAnnotationValue) === null || _b === void 0 ? void 0 : _b.call(_a, this.annotationTracks);
-        });
-    }
-    addFeature(requestConfig, ann, feature) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e;
-            if (feature.type && ((_a = this.rcsbAnnotationConfig.getConfig(feature.type)) === null || _a === void 0 ? void 0 : _a.ignore))
-                return;
-            const type = yield this.rcsbAnnotationConfig.getAnnotationType(requestConfig, ann, feature);
-            if (!this.annotationTracks.has(type)) {
-                const o = (_b = this.rcsbAnnotationConfig.getConfig(type)) !== null && _b !== void 0 ? _b : {
-                    type: type,
-                    display: "block" /* RcsbFvDisplayTypes.BLOCK */,
-                    title: type,
-                    provenanceList: new Set()
-                };
-                assertDefined(o, `Unknown type: ${type}`);
-                this.annotationTracks.set(type, this.trackManagerFactory.getTrackManager(type, o, this.polymerEntityInstanceTranslator));
-            }
-            const queryId = (_c = requestConfig.queryId) !== null && _c !== void 0 ? _c : requestConfig.groupId;
-            assertDefined(queryId, "undefined queryId or groupId");
-            assertDefined(ann.source, "undefined source");
-            assertDefined(ann.target_id, "undefined target_id");
-            (_d = this.annotationTracks.get(type)) === null || _d === void 0 ? void 0 : _d.addFeature({
-                reference: (_e = requestConfig.reference) !== null && _e !== void 0 ? _e : undefined,
-                queryId: queryId,
-                source: ann.source,
-                targetId: ann.target_id,
-                feature: feature
-            }, requestConfig.annotationProcessing);
-        });
-    }
-    mergeTracks() {
-        const typeList = Array.from(this.annotationTracks.keys());
-        typeList.forEach((type) => {
-            var _a, _b, _c, _d, _e;
-            if (this.rcsbAnnotationConfig.isMergedType(type)) {
-                const newType = (_a = this.rcsbAnnotationConfig.getMergeConfig(type)) === null || _a === void 0 ? void 0 : _a.type;
-                assertDefined(newType);
-                const color = (_b = this.rcsbAnnotationConfig.getConfig(type)) === null || _b === void 0 ? void 0 : _b.color;
-                if (!this.annotationTracks.has(newType)) {
-                    const o = this.rcsbAnnotationConfig.getConfig(newType);
-                    assertDefined(o);
-                    this.annotationTracks.set(newType, this.trackManagerFactory.getTrackManager(newType, o, this.polymerEntityInstanceTranslator));
-                }
-                const o = this.annotationTracks.get(type);
-                if (o && typeof color === "string")
-                    (_c = this.annotationTracks.get(newType)) === null || _c === void 0 ? void 0 : _c.addAll(o, color);
-                this.rcsbAnnotationConfig.addMultipleProvenance(newType, Array.from((_e = (_d = this.annotationTracks.get(newType)) === null || _d === void 0 ? void 0 : _d.getTrackProvenance()) !== null && _e !== void 0 ? _e : []));
-                this.annotationTracks.delete(type);
-            }
-        });
-    }
-}
-exports.AnnotationBlockManager = AnnotationBlockManager;

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.d.ts

@@ -1,11 +0,0 @@
-import { RcsbFvTrackDataElementGapInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
-import { FeaturePosition } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
-import { RcsbAnnotationConfigInterface } from "../../../../RcsbAnnotationConfig/AnnotationConfigInterface";
-import { TrackManagerFactoryInterface, TrackManagerInterface } from "./TrackManagerInterface";
-export interface FeaturePositionGaps extends FeaturePosition {
-    gaps?: Array<RcsbFvTrackDataElementGapInterface>;
-}
-export declare class AnnotationTrackManagerFactory implements TrackManagerFactoryInterface<[string, RcsbAnnotationConfigInterface, PolymerEntityInstanceTranslate]> {
-    getTrackManager(trackId: string, annotationConfig: RcsbAnnotationConfigInterface, entityInstanceTranslator?: PolymerEntityInstanceTranslate): TrackManagerInterface;
-}