@rcsb/rcsb-saguaro-app 6.3.2 → 6.3.4

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js

@@ -1,92 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.RcsbFvEntityBuilder = void 0;
-const tslib_1 = require("tslib");
-const RcsbFvEntity_1 = require("../RcsbFvModule/RcsbFvEntity");
-const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
-const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
-const RcsbFvUniprotBuilder_1 = require("./RcsbFvUniprotBuilder");
-const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
-class RcsbFvEntityBuilder {
-    static buildEntitySummaryFv(elementFvId, elementSelectId, entityId, additionalConfig) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            return new Promise((resolve, reject) => {
-                const pdbId = TagDelimiter_1.TagDelimiter.parseEntity(entityId).entryId;
-                const createSelectAndFvBuilder = (p) => tslib_1.__awaiter(this, void 0, void 0, function* () {
-                    const rcsbFvEntity = yield RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.createFv({
-                        elementId: elementFvId,
-                        fvModuleI: RcsbFvEntity_1.RcsbFvEntity,
-                        p: p,
-                        config: {
-                            entityId: entityId,
-                            elementSelectId: elementSelectId,
-                            additionalConfig: Object.assign(Object.assign({ rcsbContext: TagDelimiter_1.TagDelimiter.parseEntity(entityId) }, customAdditionalConfig()), additionalConfig),
-                            resolve: resolve
-                        }
-                    });
-                    const targets = yield rcsbFvEntity.getTargets();
-                    RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.buildSelectButton(elementFvId, elementSelectId, [entityId].concat(targets).map(t => {
-                        return {
-                            label: t,
-                            onChange: () => tslib_1.__awaiter(this, void 0, void 0, function* () {
-                                if (t === entityId) {
-                                    yield RcsbFvEntityBuilder.buildSingleEntitySummaryFv(elementFvId, entityId);
-                                }
-                                else {
-                                    yield RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotEntityFv(elementFvId, t, entityId, Object.assign({ alignmentFilter: [entityId] }, customAdditionalConfig({
-                                        field: GqlTypes_1.FieldName.TargetId,
-                                        operation: GqlTypes_1.OperationType.Contains,
-                                        source: GqlTypes_1.Source.PdbInstance,
-                                        values: [pdbId + TagDelimiter_1.TagDelimiter.instance]
-                                    })));
-                                }
-                            })
-                        };
-                    }));
-                    return rcsbFvEntity;
-                });
-                const entryId = TagDelimiter_1.TagDelimiter.parseEntity(entityId).entryId;
-                RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.getPolymerEntityInstanceMapAndCustomBuildFv(entryId, createSelectAndFvBuilder);
-            });
-        });
-    }
-    static buildSingleEntitySummaryFv(elementId, entityId) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            return new Promise((resolve, reject) => {
-                const entryId = TagDelimiter_1.TagDelimiter.parseEntity(entityId).entryId;
-                RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.getPolymerEntityInstanceMapAndBuildFv(elementId, entryId, RcsbFvEntity_1.RcsbFvEntity, {
-                    entityId: entityId,
-                    additionalConfig: Object.assign({ rcsbContext: TagDelimiter_1.TagDelimiter.parseEntity(entityId) }, customAdditionalConfig()),
-                    resolve: resolve
-                });
-            });
-        });
-    }
-    static buildEntityFv(elementId, entityId, additionalConfig) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            return new Promise((resolve, reject) => {
-                const entryId = TagDelimiter_1.TagDelimiter.parseEntity(entityId).entryId;
-                RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.getPolymerEntityInstanceMapAndBuildFv(elementId, entryId, RcsbFvEntity_1.RcsbFvEntity, {
-                    entityId: entityId,
-                    additionalConfig: Object.assign({ rcsbContext: TagDelimiter_1.TagDelimiter.parseEntity(entityId) }, additionalConfig),
-                    resolve: resolve
-                });
-            });
-        });
-    }
-}
-exports.RcsbFvEntityBuilder = RcsbFvEntityBuilder;
-function customAdditionalConfig(f) {
-    const filters = [{
-            field: GqlTypes_1.FieldName.Type,
-            operation: GqlTypes_1.OperationType.Equals,
-            source: GqlTypes_1.Source.PdbInstance,
-            values: [GqlTypes_1.Type.UnobservedResidueXyz, GqlTypes_1.Type.UnobservedAtomXyz, GqlTypes_1.Type.MaQaMetricLocalTypeOther, GqlTypes_1.Type.MaQaMetricLocalTypePlddt]
-        }];
-    if (f)
-        filters.push(f);
-    return {
-        sources: [GqlTypes_1.Source.PdbEntity, GqlTypes_1.Source.PdbInstance],
-        filters: filters
-    };
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.d.ts

@@ -1,8 +0,0 @@
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
-import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
-import { ActionMethods } from "../../RcsbFvUI/Helper/ActionMethods";
-export declare class RcsbFvGroupAlignmentBuilder {
-    static buildUniprotAlignmentFv(elementId: string, upAcc: string, query?: SearchQuery, additionalConfig?: RcsbFvAdditionalConfig & ActionMethods.FvChangeConfigInterface): Promise<RcsbFvModulePublicInterface>;
-    static buildGroupAlignmentFv(elementId: string, groupProvenance: GroupProvenanceId, groupId: string, query?: SearchQuery, additionalConfig?: RcsbFvAdditionalConfig & ActionMethods.FvChangeConfigInterface): Promise<RcsbFvModulePublicInterface>;
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js

@@ -1,88 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.RcsbFvGroupAlignmentBuilder = void 0;
-const tslib_1 = require("tslib");
-const DwEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums");
-const SearchRequestProperty_1 = require("../../RcsbSeacrh/SearchRequestProperty");
-const SearchQueryTools_1 = require("../../RcsbSeacrh/SearchQueryTools");
-const SearchEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums");
-const GroupPfvApp_1 = require("../RcsbFvGroup/GroupTabs/GroupPfvApp");
-const ActionMethods_1 = require("../../RcsbFvUI/Helper/ActionMethods");
-const RcsbFvUniprotBuilder_1 = require("./RcsbFvUniprotBuilder");
-const GroupExternalTrackBuilder_1 = require("../../RcsbUtils/TrackGenerators/GroupExternalTrackBuilder");
-const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
-const RcsbFvGroupBuilder_1 = require("./RcsbFvGroupBuilder");
-const GroupPfvUI_1 = require("../../RcsbFvUI/GroupPfvUI");
-const PaginationItemComponent_1 = require("../../RcsbFvUI/Components/PaginationItemComponent");
-const FeatureTools_1 = require("../../RcsbCollectTools/FeatureTools/FeatureTools");
-class RcsbFvGroupAlignmentBuilder {
-    static buildUniprotAlignmentFv(elementId, upAcc, query, additionalConfig) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            let filterEntities = undefined;
-            if (query && query.query) {
-                filterEntities = yield SearchRequestProperty_1.searchRequestProperty.requestMembers(Object.assign(Object.assign({}, query), { query: SearchQueryTools_1.SearchQueryTools.addGroupNodeToSearchQuery(DwEnums_1.GroupProvenanceId.ProvenanceMatchingUniprotAccession, upAcc, query.query), return_type: SearchEnums_1.ReturnType.PolymerEntity }));
-            }
-            return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotFv(elementId, upAcc, Object.assign(Object.assign({}, additionalConfig), { alignmentFilter: filterEntities }));
-        });
-    }
-    static buildGroupAlignmentFv(elementId, groupProvenance, groupId, query, additionalConfig) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
-            let entityCount = -1;
-            let filterEntities = undefined;
-            if (query && query.query) {
-                filterEntities = yield SearchRequestProperty_1.searchRequestProperty.requestMembers(Object.assign(Object.assign({}, query), { query: SearchQueryTools_1.SearchQueryTools.addGroupNodeToSearchQuery(groupProvenance, groupId, query.query), return_type: SearchEnums_1.ReturnType.PolymerEntity }));
-                entityCount = filterEntities.length;
-            }
-            else {
-                entityCount = yield SearchRequestProperty_1.searchRequestProperty.requestCount({ query: SearchQueryTools_1.SearchQueryTools.searchGroupQuery(groupProvenance, groupId), return_type: SearchEnums_1.ReturnType.PolymerEntity });
-            }
-            additionalConfig = Object.assign(Object.assign({}, additionalConfig), { page: Object.assign({ first: 50, after: "0" }, additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page), alignmentFilter: filterEntities, externalTrackBuilder: FeatureTools_1.FeatureTools.mergeTrackBuilders((0, GroupExternalTrackBuilder_1.groupExternalTrackBuilder)(), additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.externalTrackBuilder) });
-            // SequenceReference.PdbEntity && SequenceReference.Uniprot are needed to add row prefixes
-            const pfvArgs = [
-                (0, GroupPfvApp_1.getReferenceFromGroupProvenance)(groupProvenance),
-                groupId,
-                GqlTypes_1.SequenceReference.PdbEntity,
-                GqlTypes_1.SequenceReference.Uniprot
-            ];
-            let pfv = Object();
-            switch (groupProvenance) {
-                case DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity:
-                    pfv = yield RcsbFvGroupBuilder_1.RcsbFvGroupBuilder.buildGroupAlignmentFv(elementId, ...pfvArgs, additionalConfig);
-                    break;
-                case DwEnums_1.GroupProvenanceId.ProvenanceMatchingUniprotAccession:
-                    pfv = yield RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotAlignmentFv(elementId, groupId, additionalConfig);
-                    break;
-            }
-            const sequenceIdentityCallback = ActionMethods_1.ActionMethods.paginationCallback();
-            const uniprotCallback = ActionMethods_1.ActionMethods.paginationCallback();
-            const uiComp = {
-                component: PaginationItemComponent_1.PaginationItemComponent,
-                props: {
-                    count: entityCount,
-                    after: (_b = (_a = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page) === null || _a === void 0 ? void 0 : _a.after) !== null && _b !== void 0 ? _b : "0",
-                    first: (_d = (_c = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page) === null || _c === void 0 ? void 0 : _c.first) !== null && _d !== void 0 ? _d : 50,
-                    stateChange: (state, prevState) => {
-                        switch (groupProvenance) {
-                            case DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity:
-                                sequenceIdentityCallback(elementId, pfv, RcsbFvGroupBuilder_1.RcsbFvGroupBuilder.buildGroupAlignmentFv, pfvArgs, Object.assign(Object.assign({}, additionalConfig), { page: {
-                                        first: state.first,
-                                        after: state.after.toString()
-                                    }, excludeLogo: true }));
-                                break;
-                            case DwEnums_1.GroupProvenanceId.ProvenanceMatchingUniprotAccession:
-                                uniprotCallback(elementId, pfv, RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotAlignmentFv, [groupId], Object.assign(Object.assign({}, additionalConfig), { page: {
-                                        first: state.first,
-                                        after: state.after.toString()
-                                    } }));
-                                break;
-                        }
-                    }
-                }
-            };
-            GroupPfvUI_1.GroupPfvUI.fvUI(GroupPfvUI_1.GroupPfvUI.addBootstrapElement(elementId), (_f = (_e = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.externalUiComponents) === null || _e === void 0 ? void 0 : _e.replace) !== null && _f !== void 0 ? _f : (entityCount > ((_h = (_g = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page) === null || _g === void 0 ? void 0 : _g.first) !== null && _h !== void 0 ? _h : 50) ? [uiComp] : []).concat(((_j = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.externalUiComponents) === null || _j === void 0 ? void 0 : _j.add) ? additionalConfig.externalUiComponents.add : []));
-            return pfv;
-        });
-    }
-}
-exports.RcsbFvGroupAlignmentBuilder = RcsbFvGroupAlignmentBuilder;

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.d.ts

@@ -1,6 +0,0 @@
-import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
-import { GroupReference, SequenceReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-export declare class RcsbFvGroupBuilder {
-    static buildGroupAnnotationFv(elementId: string, group: GroupReference, groupId: string, to: SequenceReference, from?: SequenceReference, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-    static buildGroupAlignmentFv(elementId: string, group: GroupReference, groupId: string, to: SequenceReference, from?: SequenceReference, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.js

@@ -1,57 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.RcsbFvGroupBuilder = void 0;
-const tslib_1 = require("tslib");
-const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
-const RcsbFvGroupAnnotation_1 = require("../RcsbFvModule/RcsbFvGroupAnnotation");
-const RcsbFvGroupAlignment_1 = require("../RcsbFvModule/RcsbFvGroupAlignment");
-class RcsbFvGroupBuilder {
-    //TODO How to make this method more general. Variables from, to and group should be parameters. What happens when from cannot be defined ?
-    static buildGroupAnnotationFv(elementId, group, groupId, to, from, additionalConfig) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            return new Promise((resolve, reject) => {
-                try {
-                    RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.createFv({
-                        elementId: elementId,
-                        fvModuleI: RcsbFvGroupAnnotation_1.RcsbFvGroupAnnotation,
-                        config: {
-                            group: group,
-                            groupId: groupId,
-                            from: from,
-                            to: to,
-                            additionalConfig: additionalConfig,
-                            resolve: resolve
-                        }
-                    });
-                }
-                catch (e) {
-                    reject(e);
-                }
-            });
-        });
-    }
-    static buildGroupAlignmentFv(elementId, group, groupId, to, from, additionalConfig) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            return new Promise((resolve, reject) => {
-                try {
-                    RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.createFv({
-                        elementId: elementId,
-                        fvModuleI: RcsbFvGroupAlignment_1.RcsbFvGroupAlignment,
-                        config: {
-                            group: group,
-                            groupId: groupId,
-                            from: from,
-                            to: to,
-                            additionalConfig: Object.assign({}, additionalConfig),
-                            resolve: resolve
-                        }
-                    });
-                }
-                catch (e) {
-                    reject(e);
-                }
-            });
-        });
-    }
-}
-exports.RcsbFvGroupBuilder = RcsbFvGroupBuilder;

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.d.ts

@@ -1,24 +0,0 @@
-import { RcsbContextType, RcsbFvAdditionalConfig } from "../RcsbFvModule/RcsbFvModuleInterface";
-import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
-import { SelectOptionProps } from "../RcsbFvComponents/SelectButton";
-import { RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
-export interface InstanceSequenceOnchangeInterface extends PolymerEntityInstanceInterface {
-}
-type InstanceModuleType = "interface" | "instance";
-export interface InstanceSequenceConfig {
-    dropdownTitle?: string;
-    defaultValue?: string | undefined | null;
-    beforeChangeCallback?: (x: InstanceSequenceOnchangeInterface, module: RcsbFvModulePublicInterface | undefined) => undefined | RcsbContextType;
-    onChangeCallback?: (x: InstanceSequenceOnchangeInterface, module: RcsbFvModulePublicInterface) => void;
-    filterInstances?: Set<string>;
-    displayAuthId?: boolean;
-    selectButtonOptionProps?: (props: SelectOptionProps) => JSX.Element;
-    module?: InstanceModuleType;
-}
-export declare class RcsbFvInstanceBuilder {
-    static buildMultipleInstanceSequenceFv(elementFvId: string, elementEntrySelectId: string, elementInstanceSelectId: string, entryIdList: Array<string>, config?: InstanceSequenceConfig, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-    static buildInstanceSequenceFv(elementFvId: string, elementSelectId: string, entryId: string, config: InstanceSequenceConfig, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-    static buildSelectorInstanceFv(instanceList: Array<PolymerEntityInstanceInterface>, elementFvId: string, elementSelectId: string, entryId: string, config: InstanceSequenceConfig, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-    static buildInstanceFv(elementId: string, instanceId: string, additionalConfig?: RcsbFvAdditionalConfig, module?: InstanceModuleType): Promise<RcsbFvModulePublicInterface>;
-}
-export {};

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js

@@ -1,114 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.RcsbFvInstanceBuilder = void 0;
-const tslib_1 = require("tslib");
-const RcsbFvInstance_1 = require("../RcsbFvModule/RcsbFvInstance");
-const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
-const RcsbFvInterface_1 = require("../RcsbFvModule/RcsbFvInterface");
-const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
-const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter");
-//TODO Find a better structure for change callbacks
-class RcsbFvInstanceBuilder {
-    static buildMultipleInstanceSequenceFv(elementFvId_1, elementEntrySelectId_1, elementInstanceSelectId_1, entryIdList_1) {
-        return tslib_1.__awaiter(this, arguments, void 0, function* (elementFvId, elementEntrySelectId, elementInstanceSelectId, entryIdList, config = {}, additionalConfig) {
-            RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.buildSelectButton(elementFvId, elementEntrySelectId, entryIdList.map(entryId => {
-                return {
-                    label: entryId,
-                    shortLabel: entryId,
-                    onChange: () => {
-                        RcsbFvInstanceBuilder.buildInstanceSequenceFv(elementFvId, elementInstanceSelectId, entryId, Object.assign(Object.assign({}, config), { displayAuthId: true }), additionalConfig);
-                    }
-                };
-            }), { addTitle: true, dropdownTitle: "PDB" });
-            const entryId = entryIdList[0];
-            return yield RcsbFvInstanceBuilder.buildInstanceSequenceFv(elementFvId, elementInstanceSelectId, entryId, Object.assign(Object.assign({}, config), { displayAuthId: true }), additionalConfig);
-        });
-    }
-    static buildInstanceSequenceFv(elementFvId, elementSelectId, entryId, config, additionalConfig) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            const entityInstanceTranslator = yield RcsbRequestContextManager_1.rcsbRequestCtxManager.getEntityToInstance(entryId);
-            const result = entityInstanceTranslator.getData();
-            if (result.length == 0) {
-                RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.showMessage(elementFvId, "No sequence features are available");
-                throw new Error("No sequence features are available");
-            }
-            else {
-                return RcsbFvInstanceBuilder.buildSelectorInstanceFv(result, elementFvId, elementSelectId, entryId, config, additionalConfig);
-            }
-        });
-    }
-    static buildSelectorInstanceFv(instanceList, elementFvId, elementSelectId, entryId, config, additionalConfig) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
-            const filteredInstanceList = instanceList.filter(i => (config.filterInstances == null || config.filterInstances.has(i.asymId)));
-            const groupedInstances = new Map();
-            filteredInstanceList.forEach((instance) => {
-                var _a;
-                if (!groupedInstances.has(instance.entityId))
-                    groupedInstances.set(instance.entityId, new Array());
-                const label = instance.asymId === instance.authId ? instance.asymId : `${instance.asymId} [auth ${instance.authId}]`;
-                (_a = groupedInstances.get(instance.entityId)) === null || _a === void 0 ? void 0 : _a.push({
-                    name: instance.name + " - " + instance.taxNames.join(", "),
-                    label: label,
-                    groupLabel: `ENTITY ${instance.entityId} - ${instance.name}`,
-                    shortLabel: config.displayAuthId === true ? instance.authId : label,
-                    optId: instance.asymId,
-                    onChange: () => tslib_1.__awaiter(this, void 0, void 0, function* () {
-                        out.getFv().reset();
-                        let externalContext;
-                        if (typeof config.beforeChangeCallback === "function")
-                            externalContext = config.beforeChangeCallback(instance, out);
-                        const rcsbContext = Object.assign(Object.assign(Object.assign({}, additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.rcsbContext), externalContext), instance);
-                        yield RcsbFvInstanceBuilder.buildInstanceFv(elementFvId, instance.rcsbId, Object.assign(Object.assign({}, additionalConfig), { rcsbContext: rcsbContext }), config.module);
-                        if (typeof config.onChangeCallback === "function")
-                            config.onChangeCallback(instance, out);
-                    })
-                });
-            });
-            let index = 0;
-            if (config.defaultValue != null) {
-                const n = filteredInstanceList.findIndex(a => {
-                    return a.asymId === config.defaultValue;
-                });
-                if (n >= 0)
-                    index = n;
-                else
-                    config.defaultValue = undefined;
-            }
-            RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.buildSelectButton(elementFvId, elementSelectId, Array.from(groupedInstances.values()).map((group, n) => {
-                var _a;
-                return ({
-                    label: (_a = group[0].groupLabel) !== null && _a !== void 0 ? _a : `Group ${n}`,
-                    options: group
-                });
-            }), { addTitle: true, defaultValue: config.defaultValue, dropdownTitle: ((_a = config.dropdownTitle) !== null && _a !== void 0 ? _a : "INSTANCE"), width: config.displayAuthId === true ? 70 : undefined, optionProps: config.selectButtonOptionProps });
-            let externalContext;
-            if (typeof config.beforeChangeCallback === "function")
-                externalContext = config.beforeChangeCallback(filteredInstanceList[index], undefined);
-            const rcsbContext = Object.assign(Object.assign(Object.assign({}, additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.rcsbContext), externalContext), filteredInstanceList[index]);
-            const out = yield RcsbFvInstanceBuilder.buildInstanceFv(elementFvId, filteredInstanceList[index].rcsbId, Object.assign(Object.assign({}, additionalConfig), { rcsbContext: rcsbContext }), config.module);
-            if (typeof config.onChangeCallback === "function")
-                config.onChangeCallback(filteredInstanceList[index], out);
-            return out;
-        });
-    }
-    static buildInstanceFv(elementId, instanceId, additionalConfig, module) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            return new Promise((resolve, reject) => {
-                try {
-                    const entryId = instanceId.split(TagDelimiter_1.TagDelimiter.instance)[0];
-                    const asymId = instanceId.split(TagDelimiter_1.TagDelimiter.instance)[1];
-                    RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.getPolymerEntityInstanceMapAndBuildFv(elementId, entryId, module === "interface" ? RcsbFvInterface_1.RcsbFvInterface : RcsbFvInstance_1.RcsbFvInstance, {
-                        instanceId: instanceId,
-                        additionalConfig: Object.assign(Object.assign({}, additionalConfig), { rcsbContext: Object.assign(Object.assign({}, additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.rcsbContext), { entryId: entryId, asymId: asymId }) }),
-                        resolve: resolve
-                    });
-                }
-                catch (e) {
-                    reject(e);
-                }
-            });
-        });
-    }
-}
-exports.RcsbFvInstanceBuilder = RcsbFvInstanceBuilder;

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder.d.ts

@@ -1,5 +0,0 @@
-import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
-import { PairwiseAlignmentInterface } from "../../RcsbUtils/PairwiseAlignmentTools/PairwiseAlignmentBuilder";
-export declare class RcsbFvPairwiseAligmentBuilder {
-    static buildPairwiseAlignment(elementId: string, psa: PairwiseAlignmentInterface, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder.js

@@ -1,32 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.RcsbFvPairwiseAligmentBuilder = void 0;
-const tslib_1 = require("tslib");
-const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
-const RcsbFvPairwiseAlignment_1 = require("../RcsbFvModule/RcsbFvPairwiseAlignment");
-class RcsbFvPairwiseAligmentBuilder {
-    static buildPairwiseAlignment(elementId, psa, additionalConfig) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            return new Promise((resolve, reject) => {
-                try {
-                    RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.createFv({
-                        elementId: elementId,
-                        fvModuleI: RcsbFvPairwiseAlignment_1.RcsbFvPairwiseAlignment,
-                        config: {
-                            psa: psa,
-                            additionalConfig: Object.assign({ rcsbContext: {
-                                    queryId: psa.queryId,
-                                    targetId: psa.targetId
-                                } }, additionalConfig),
-                            resolve: resolve
-                        }
-                    });
-                }
-                catch (e) {
-                    reject(e);
-                }
-            });
-        });
-    }
-}
-exports.RcsbFvPairwiseAligmentBuilder = RcsbFvPairwiseAligmentBuilder;

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.d.ts

@@ -1,12 +0,0 @@
-import { SequenceReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
-export interface PfvBuilderInterface {
-    queryId: string;
-    reference: SequenceReference;
-    alignmentSource?: SequenceReference;
-    hideAlignments?: boolean;
-    bottomAlignments?: boolean;
-}
-export declare class RcsbFvProteinSequenceBuilder {
-    static buildPfv(elementId: string, config: PfvBuilderInterface): Promise<RcsbFvModulePublicInterface>;
-}

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js

@@ -1,46 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.RcsbFvProteinSequenceBuilder = void 0;
-const tslib_1 = require("tslib");
-const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
-const RcsbFvProteinSequence_1 = require("../RcsbFvModule/RcsbFvProteinSequence");
-const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
-class RcsbFvProteinSequenceBuilder {
-    static buildPfv(elementId, config) {
-        return tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _a;
-            const alignmentSource = (_a = config.alignmentSource) !== null && _a !== void 0 ? _a : config.reference;
-            const sources = [GqlTypes_1.Source.Uniprot];
-            if (config.reference == GqlTypes_1.SequenceReference.PdbEntity)
-                sources.unshift(GqlTypes_1.Source.PdbEntity);
-            if (config.reference == GqlTypes_1.SequenceReference.PdbInstance)
-                sources.unshift(GqlTypes_1.Source.PdbInstance);
-            return new Promise((resolve, reject) => {
-                try {
-                    RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.createFv({
-                        elementId: elementId,
-                        fvModuleI: RcsbFvProteinSequence_1.RcsbFvProteinSequence,
-                        config: {
-                            queryId: config.queryId,
-                            from: config.reference,
-                            to: alignmentSource,
-                            sources: sources,
-                            additionalConfig: {
-                                rcsbContext: {
-                                    queryId: config.queryId
-                                },
-                                hideAlignments: config.hideAlignments,
-                                bottomAlignments: config.bottomAlignments
-                            },
-                            resolve: resolve
-                        }
-                    });
-                }
-                catch (e) {
-                    reject(e);
-                }
-            });
-        });
-    }
-}
-exports.RcsbFvProteinSequenceBuilder = RcsbFvProteinSequenceBuilder;

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.d.ts

@@ -1,17 +0,0 @@
-import { RcsbContextType, RcsbFvAdditionalConfig } from "../RcsbFvModule/RcsbFvModuleInterface";
-import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
-import { RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
-export interface UniprotSequenceOnchangeInterface extends Partial<PolymerEntityInstanceInterface> {
-    upAcc: string;
-}
-export interface UniprotSequenceConfig {
-    beforeChangeCallback?: (x: UniprotSequenceOnchangeInterface, module: RcsbFvModulePublicInterface | undefined) => undefined | RcsbContextType;
-    onChangeCallback?: (x: UniprotSequenceOnchangeInterface, module: RcsbFvModulePublicInterface) => void;
-}
-export declare class RcsbFvUniprotBuilder {
-    static buildUniprotMultipleEntitySequenceFv(elementFvId: string, elementSelectId: string, upAcc: string, config?: UniprotSequenceConfig, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-    static buildUniprotFv(elementId: string, upAcc: string, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-    static buildUniprotEntityFv(elementId: string, upAcc: string, entityId: string, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-    static buildUniprotEntityInstanceFv(elementId: string, upAcc: string, entityId: string, instanceId: string, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-    static buildUniprotAlignmentFv(elementId: string, upAcc: string, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
-}